Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34965.t1 | RHN42333.1 | 97.4 | 342 | 6 | 2 | 1 | 339 | 7 | 348 | 1.20E-198 | 702.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34965.t1 | Q9SIS4 | 63.8 | 354 | 112 | 8 | 1 | 339 | 1 | 353 | 7.3e-128 | 458.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34965.t1 | A0A396GP95 | 97.4 | 342 | 6 | 2 | 1 | 339 | 7 | 348 | 8.7e-199 | 702.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene018546 | MS.gene34965 | PPI |
MS.gene061907 | MS.gene34965 | PPI |
MS.gene09836 | MS.gene34965 | PPI |
MS.gene64505 | MS.gene34965 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34965.t1 | MTR_1g038810 | 67.828 | 373 | 85 | 7 | 1 | 339 | 9 | 380 | 5.65e-174 | 491 |
MS.gene34965.t1 | MTR_1g038810 | 66.756 | 373 | 85 | 8 | 1 | 339 | 9 | 376 | 2.31e-168 | 477 |
MS.gene34965.t1 | MTR_6g072010 | 53.247 | 308 | 120 | 3 | 55 | 339 | 47 | 353 | 2.83e-114 | 337 |
MS.gene34965.t1 | MTR_6g072010 | 53.247 | 308 | 120 | 3 | 55 | 339 | 58 | 364 | 8.94e-114 | 336 |
MS.gene34965.t1 | MTR_7g100070 | 41.304 | 368 | 174 | 9 | 2 | 339 | 11 | 366 | 1.00e-81 | 256 |
MS.gene34965.t1 | MTR_7g100070 | 41.417 | 367 | 174 | 9 | 2 | 339 | 11 | 365 | 1.83e-81 | 255 |
MS.gene34965.t1 | MTR_7g100070 | 41.304 | 368 | 174 | 9 | 2 | 339 | 51 | 406 | 4.68e-81 | 255 |
MS.gene34965.t1 | MTR_6g009260 | 42.453 | 318 | 152 | 7 | 52 | 339 | 54 | 370 | 3.61e-75 | 239 |
MS.gene34965.t1 | MTR_8g091360 | 53.110 | 209 | 90 | 4 | 137 | 339 | 312 | 518 | 1.04e-65 | 218 |
MS.gene34965.t1 | MTR_8g091360 | 51.852 | 81 | 37 | 2 | 45 | 124 | 131 | 210 | 1.31e-17 | 84.3 |
MS.gene34965.t1 | MTR_5g006820 | 50.971 | 206 | 93 | 3 | 140 | 339 | 354 | 557 | 1.42e-62 | 210 |
MS.gene34965.t1 | MTR_5g006820 | 51.852 | 81 | 36 | 2 | 46 | 124 | 84 | 163 | 3.14e-18 | 86.3 |
MS.gene34965.t1 | MTR_8g043480 | 49.519 | 208 | 94 | 5 | 140 | 339 | 45 | 249 | 1.94e-62 | 201 |
MS.gene34965.t1 | MTR_1g071680 | 48.472 | 229 | 105 | 5 | 118 | 339 | 269 | 491 | 5.84e-62 | 207 |
MS.gene34965.t1 | MTR_1g071680 | 48.864 | 88 | 40 | 2 | 37 | 124 | 79 | 161 | 1.60e-17 | 84.0 |
MS.gene34965.t1 | MTR_1g103330 | 48.198 | 222 | 104 | 4 | 132 | 347 | 307 | 523 | 1.41e-61 | 207 |
MS.gene34965.t1 | MTR_1g103330 | 53.086 | 81 | 35 | 2 | 46 | 124 | 82 | 161 | 6.80e-19 | 88.2 |
MS.gene34965.t1 | MTR_8g043480 | 49.519 | 208 | 94 | 5 | 140 | 339 | 175 | 379 | 1.02e-60 | 201 |
MS.gene34965.t1 | MTR_8g043480 | 47.945 | 73 | 37 | 1 | 52 | 124 | 8 | 79 | 2.17e-15 | 77.4 |
MS.gene34965.t1 | MTR_8g043480 | 49.519 | 208 | 94 | 5 | 140 | 339 | 240 | 444 | 3.07e-60 | 201 |
MS.gene34965.t1 | MTR_8g043480 | 47.945 | 73 | 37 | 1 | 52 | 124 | 73 | 144 | 2.60e-15 | 77.0 |
MS.gene34965.t1 | MTR_6g042240 | 53.403 | 191 | 84 | 2 | 143 | 333 | 372 | 557 | 1.77e-58 | 199 |
MS.gene34965.t1 | MTR_6g042240 | 52.113 | 71 | 33 | 1 | 55 | 125 | 99 | 168 | 1.21e-15 | 78.6 |
MS.gene34965.t1 | MTR_6g042240 | 53.403 | 191 | 84 | 2 | 143 | 333 | 332 | 517 | 2.04e-58 | 198 |
MS.gene34965.t1 | MTR_6g042240 | 52.113 | 71 | 33 | 1 | 55 | 125 | 59 | 128 | 1.01e-15 | 78.6 |
MS.gene34965.t1 | MTR_6g042240 | 55.682 | 176 | 77 | 1 | 143 | 318 | 385 | 559 | 3.91e-58 | 199 |
MS.gene34965.t1 | MTR_6g042240 | 44.828 | 87 | 47 | 1 | 39 | 125 | 96 | 181 | 1.28e-15 | 78.6 |
MS.gene34965.t1 | MTR_1g097690 | 51.010 | 198 | 92 | 3 | 136 | 333 | 347 | 539 | 6.31e-58 | 197 |
MS.gene34965.t1 | MTR_1g097690 | 42.529 | 87 | 49 | 1 | 39 | 125 | 87 | 172 | 9.90e-14 | 72.4 |
MS.gene34965.t1 | MTR_7g095260 | 49.754 | 203 | 94 | 3 | 143 | 339 | 239 | 439 | 3.17e-57 | 193 |
MS.gene34965.t1 | MTR_7g095260 | 54.930 | 71 | 31 | 1 | 54 | 124 | 40 | 109 | 1.54e-16 | 80.9 |
MS.gene34965.t1 | MTR_7g095260 | 49.754 | 203 | 94 | 3 | 143 | 339 | 291 | 491 | 3.40e-57 | 194 |
MS.gene34965.t1 | MTR_7g095260 | 54.930 | 71 | 31 | 1 | 54 | 124 | 92 | 161 | 1.86e-16 | 80.9 |
MS.gene34965.t1 | MTR_4g098850 | 42.578 | 256 | 129 | 4 | 93 | 339 | 544 | 790 | 1.26e-54 | 192 |
MS.gene34965.t1 | MTR_4g098850 | 46.541 | 159 | 80 | 2 | 184 | 339 | 2 | 158 | 8.08e-35 | 135 |
MS.gene34965.t1 | MTR_4g098850 | 38.824 | 85 | 52 | 0 | 41 | 125 | 340 | 424 | 7.01e-14 | 73.2 |
MS.gene34965.t1 | MTR_5g014090 | 41.732 | 254 | 142 | 3 | 89 | 339 | 317 | 567 | 6.08e-53 | 184 |
MS.gene34965.t1 | MTR_5g014090 | 44.330 | 97 | 49 | 2 | 41 | 133 | 93 | 188 | 1.77e-17 | 84.0 |
MS.gene34965.t1 | MTR_8g091360 | 55.782 | 147 | 62 | 1 | 140 | 283 | 315 | 461 | 2.65e-50 | 174 |
MS.gene34965.t1 | MTR_8g091360 | 51.852 | 81 | 37 | 2 | 45 | 124 | 131 | 210 | 1.27e-17 | 84.0 |
MS.gene34965.t1 | MTR_1g097690 | 52.349 | 149 | 71 | 0 | 136 | 284 | 347 | 495 | 2.09e-47 | 167 |
MS.gene34965.t1 | MTR_1g097690 | 42.529 | 87 | 49 | 1 | 39 | 125 | 87 | 172 | 8.99e-14 | 72.4 |
MS.gene34965.t1 | MTR_5g014090 | 39.175 | 194 | 117 | 1 | 89 | 282 | 317 | 509 | 7.71e-37 | 139 |
MS.gene34965.t1 | MTR_5g014090 | 44.330 | 97 | 49 | 2 | 41 | 133 | 93 | 188 | 1.48e-17 | 84.0 |
MS.gene34965.t1 | MTR_1g078100 | 26.923 | 312 | 173 | 9 | 55 | 333 | 528 | 817 | 3.89e-26 | 110 |
MS.gene34965.t1 | MTR_1g078100 | 26.923 | 312 | 173 | 9 | 55 | 333 | 248 | 537 | 4.72e-26 | 109 |
MS.gene34965.t1 | MTR_1g078100 | 26.923 | 312 | 173 | 9 | 55 | 333 | 259 | 548 | 5.31e-26 | 109 |
MS.gene34965.t1 | MTR_6g092670 | 26.370 | 292 | 169 | 6 | 51 | 309 | 559 | 837 | 8.15e-25 | 106 |
MS.gene34965.t1 | MTR_1g021730 | 27.675 | 271 | 141 | 13 | 56 | 316 | 34 | 259 | 1.17e-13 | 71.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34965.t1 | AT2G01900 | 63.559 | 354 | 113 | 7 | 1 | 339 | 1 | 353 | 1.47e-159 | 453 |
MS.gene34965.t1 | AT2G01900 | 63.559 | 354 | 113 | 7 | 1 | 339 | 9 | 361 | 1.68e-159 | 453 |
MS.gene34965.t1 | AT2G01900 | 61.864 | 354 | 110 | 8 | 1 | 339 | 1 | 344 | 5.06e-152 | 434 |
MS.gene34965.t1 | AT2G37440 | 44.961 | 387 | 160 | 11 | 2 | 339 | 11 | 393 | 9.17e-89 | 275 |
MS.gene34965.t1 | AT2G37440 | 44.961 | 387 | 160 | 11 | 2 | 339 | 11 | 393 | 9.17e-89 | 275 |
MS.gene34965.t1 | AT2G37440 | 47.468 | 316 | 130 | 6 | 56 | 339 | 1 | 312 | 1.71e-81 | 253 |
MS.gene34965.t1 | AT5G65090 | 53.883 | 206 | 87 | 3 | 140 | 339 | 199 | 402 | 2.69e-66 | 216 |
MS.gene34965.t1 | AT5G65090 | 44.186 | 86 | 47 | 1 | 52 | 137 | 8 | 92 | 5.17e-18 | 85.1 |
MS.gene34965.t1 | AT5G65090 | 53.883 | 206 | 87 | 3 | 140 | 339 | 262 | 465 | 7.07e-66 | 217 |
MS.gene34965.t1 | AT5G65090 | 44.186 | 86 | 47 | 1 | 52 | 137 | 71 | 155 | 8.11e-18 | 84.7 |
MS.gene34965.t1 | AT5G65090 | 53.883 | 206 | 87 | 3 | 140 | 339 | 262 | 465 | 7.07e-66 | 217 |
MS.gene34965.t1 | AT5G65090 | 44.186 | 86 | 47 | 1 | 52 | 137 | 71 | 155 | 8.11e-18 | 84.7 |
MS.gene34965.t1 | AT1G05470 | 51.185 | 211 | 92 | 4 | 143 | 347 | 352 | 557 | 6.02e-63 | 211 |
MS.gene34965.t1 | AT1G05470 | 57.333 | 75 | 31 | 1 | 50 | 124 | 88 | 161 | 1.73e-19 | 90.1 |
MS.gene34965.t1 | AT1G05470 | 51.185 | 211 | 92 | 4 | 143 | 347 | 352 | 557 | 6.02e-63 | 211 |
MS.gene34965.t1 | AT1G05470 | 57.333 | 75 | 31 | 1 | 50 | 124 | 88 | 161 | 1.73e-19 | 90.1 |
MS.gene34965.t1 | AT2G32010 | 51.185 | 211 | 92 | 4 | 143 | 347 | 329 | 534 | 6.27e-63 | 211 |
MS.gene34965.t1 | AT2G32010 | 57.333 | 75 | 31 | 1 | 50 | 124 | 87 | 160 | 1.27e-19 | 90.5 |
MS.gene34965.t1 | AT2G32010 | 51.185 | 211 | 92 | 4 | 143 | 347 | 329 | 534 | 6.27e-63 | 211 |
MS.gene34965.t1 | AT2G32010 | 57.333 | 75 | 31 | 1 | 50 | 124 | 87 | 160 | 1.27e-19 | 90.5 |
MS.gene34965.t1 | AT2G32010 | 51.185 | 211 | 92 | 4 | 143 | 347 | 329 | 534 | 6.27e-63 | 211 |
MS.gene34965.t1 | AT2G32010 | 57.333 | 75 | 31 | 1 | 50 | 124 | 87 | 160 | 1.27e-19 | 90.5 |
MS.gene34965.t1 | AT2G32010 | 51.185 | 211 | 92 | 4 | 143 | 347 | 329 | 534 | 6.27e-63 | 211 |
MS.gene34965.t1 | AT2G32010 | 57.333 | 75 | 31 | 1 | 50 | 124 | 87 | 160 | 1.27e-19 | 90.5 |
MS.gene34965.t1 | AT5G04980 | 50.971 | 206 | 94 | 4 | 140 | 339 | 157 | 361 | 1.59e-61 | 202 |
MS.gene34965.t1 | AT5G04980 | 50.971 | 206 | 94 | 4 | 140 | 339 | 192 | 396 | 3.13e-61 | 202 |
MS.gene34965.t1 | AT5G04980 | 52.308 | 65 | 30 | 1 | 55 | 119 | 10 | 73 | 2.18e-13 | 71.2 |
MS.gene34965.t1 | AT5G04980 | 50.971 | 206 | 94 | 4 | 140 | 339 | 192 | 396 | 3.13e-61 | 202 |
MS.gene34965.t1 | AT5G04980 | 52.308 | 65 | 30 | 1 | 55 | 119 | 10 | 73 | 2.18e-13 | 71.2 |
MS.gene34965.t1 | AT5G04980 | 50.971 | 206 | 94 | 4 | 140 | 339 | 221 | 425 | 3.34e-61 | 203 |
MS.gene34965.t1 | AT5G04980 | 42.857 | 91 | 46 | 2 | 29 | 119 | 18 | 102 | 2.47e-13 | 71.2 |
MS.gene34965.t1 | AT3G63240 | 50.226 | 221 | 97 | 5 | 126 | 339 | 267 | 481 | 8.92e-60 | 201 |
MS.gene34965.t1 | AT3G63240 | 55.714 | 70 | 30 | 1 | 55 | 124 | 89 | 157 | 1.23e-16 | 81.3 |
MS.gene34965.t1 | AT3G63240 | 50.226 | 221 | 97 | 5 | 126 | 339 | 267 | 481 | 8.92e-60 | 201 |
MS.gene34965.t1 | AT3G63240 | 55.714 | 70 | 30 | 1 | 55 | 124 | 89 | 157 | 1.23e-16 | 81.3 |
MS.gene34965.t1 | AT1G34120 | 47.264 | 201 | 99 | 3 | 143 | 339 | 185 | 382 | 3.54e-55 | 186 |
MS.gene34965.t1 | AT4G18010 | 49.738 | 191 | 94 | 1 | 143 | 333 | 392 | 580 | 1.13e-54 | 188 |
MS.gene34965.t1 | AT4G18010 | 43.158 | 95 | 53 | 1 | 41 | 135 | 98 | 191 | 9.83e-18 | 84.7 |
MS.gene34965.t1 | AT4G18010 | 47.368 | 209 | 102 | 3 | 143 | 348 | 392 | 595 | 3.25e-54 | 188 |
MS.gene34965.t1 | AT4G18010 | 43.158 | 95 | 53 | 1 | 41 | 135 | 98 | 191 | 1.09e-17 | 84.7 |
MS.gene34965.t1 | AT1G34120 | 47.264 | 201 | 99 | 3 | 143 | 339 | 336 | 533 | 1.08e-53 | 186 |
MS.gene34965.t1 | AT1G34120 | 40.000 | 100 | 59 | 1 | 39 | 138 | 86 | 184 | 1.69e-14 | 75.1 |
MS.gene34965.t1 | AT1G34120 | 47.264 | 201 | 99 | 3 | 143 | 339 | 340 | 537 | 1.29e-53 | 186 |
MS.gene34965.t1 | AT1G34120 | 40.000 | 100 | 59 | 1 | 39 | 138 | 90 | 188 | 1.71e-14 | 75.1 |
MS.gene34965.t1 | AT1G34120 | 47.264 | 201 | 98 | 4 | 143 | 339 | 340 | 536 | 6.90e-52 | 181 |
MS.gene34965.t1 | AT1G34120 | 40.000 | 100 | 59 | 1 | 39 | 138 | 90 | 188 | 1.72e-14 | 75.1 |
MS.gene34965.t1 | AT1G71710 | 45.550 | 191 | 100 | 2 | 143 | 333 | 402 | 588 | 2.09e-49 | 175 |
MS.gene34965.t1 | AT1G71710 | 47.126 | 87 | 45 | 1 | 39 | 125 | 104 | 189 | 2.01e-18 | 87.0 |
MS.gene34965.t1 | AT1G71710 | 45.550 | 191 | 100 | 2 | 143 | 333 | 411 | 597 | 2.63e-49 | 175 |
MS.gene34965.t1 | AT1G71710 | 47.126 | 87 | 45 | 1 | 39 | 125 | 113 | 198 | 1.99e-18 | 87.0 |
MS.gene34965.t1 | AT1G34120 | 49.640 | 139 | 68 | 1 | 143 | 279 | 336 | 474 | 2.77e-38 | 142 |
MS.gene34965.t1 | AT1G34120 | 40.000 | 100 | 59 | 1 | 39 | 138 | 86 | 184 | 1.74e-14 | 74.7 |
MS.gene34965.t1 | AT1G65580 | 27.476 | 313 | 175 | 9 | 55 | 333 | 273 | 567 | 7.20e-29 | 118 |
MS.gene34965.t1 | AT1G65580 | 27.796 | 313 | 174 | 9 | 55 | 333 | 539 | 833 | 9.57e-29 | 117 |
MS.gene34965.t1 | AT1G05630 | 27.157 | 313 | 176 | 7 | 55 | 333 | 572 | 866 | 3.38e-28 | 116 |
MS.gene34965.t1 | AT1G05630 | 27.157 | 313 | 176 | 7 | 55 | 333 | 572 | 866 | 4.77e-28 | 115 |
MS.gene34965.t1 | AT2G43900 | 25.862 | 290 | 166 | 6 | 55 | 309 | 577 | 852 | 7.73e-26 | 109 |
MS.gene34965.t1 | AT2G43900 | 25.862 | 290 | 166 | 6 | 55 | 309 | 577 | 852 | 7.97e-26 | 109 |
MS.gene34965.t1 | AT2G31830 | 26.518 | 313 | 178 | 7 | 55 | 333 | 581 | 875 | 4.33e-25 | 107 |
MS.gene34965.t1 | AT2G31830 | 26.518 | 313 | 178 | 7 | 55 | 333 | 581 | 875 | 4.39e-25 | 107 |
MS.gene34965.t1 | AT2G31830 | 26.518 | 313 | 178 | 7 | 55 | 333 | 581 | 875 | 5.41e-25 | 106 |
MS.gene34965.t1 | AT1G05630 | 28.495 | 186 | 112 | 4 | 55 | 233 | 572 | 743 | 1.83e-17 | 84.3 |
MS.gene34965.t1 | AT1G47510 | 25.940 | 266 | 148 | 10 | 56 | 316 | 56 | 277 | 7.10e-14 | 72.0 |
MS.gene34965.t1 | AT1G47510 | 32.432 | 148 | 85 | 5 | 171 | 316 | 81 | 215 | 8.20e-14 | 71.2 |
Find 70 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATTATGGAATTCCATTTAT+TGG | 0.159218 | 4.4:-17892518 | None:intergenic |
CCAAATTCGGATATATATTA+TGG | 0.203896 | 4.4:+17894260 | MS.gene34965:CDS |
ACAATGAAATTTCCAATAAA+TGG | 0.214880 | 4.4:+17892506 | MS.gene34965:CDS |
CCATAATATATATCCGAATT+TGG | 0.241692 | 4.4:-17894260 | None:intergenic |
CTTGTATTTGTGTTTGTCCT+TGG | 0.283816 | 4.4:-17892107 | None:intergenic |
GTGTGTAGCCATCTAGCTTC+AGG | 0.308501 | 4.4:+17893289 | MS.gene34965:CDS |
TGCTTGGAGATTTAAATTAT+AGG | 0.331581 | 4.4:+17893988 | MS.gene34965:CDS |
TCTAAAAGCTTCAAATGTAT+TGG | 0.332943 | 4.4:+17892474 | MS.gene34965:CDS |
TCATGGTCTAGAATATTTCT+TGG | 0.341551 | 4.4:-17893403 | None:intergenic |
AATCAGAAAAGCTTTGAATA+AGG | 0.342999 | 4.4:+17892537 | MS.gene34965:CDS |
TGTTTGTCCTTGGGATGATT+AGG | 0.356217 | 4.4:-17892097 | None:intergenic |
CTAAAAGCTTCAAATGTATT+GGG | 0.357957 | 4.4:+17892475 | MS.gene34965:CDS |
TGTGGCATAATGAGATGTTT+AGG | 0.368843 | 4.4:+17892706 | MS.gene34965:CDS |
TTGTATTTGTGTTTGTCCTT+GGG | 0.382205 | 4.4:-17892106 | None:intergenic |
CTACAAATATTGTCCAAATT+CGG | 0.392628 | 4.4:+17894247 | MS.gene34965:CDS |
TCCTGTGACATCTATGTACT+TGG | 0.396131 | 4.4:+17892322 | MS.gene34965:CDS |
CGAATTTGGACAATATTTGT+AGG | 0.419036 | 4.4:-17894246 | None:intergenic |
TTTAAACGTAGATGATTTGT+TGG | 0.420397 | 4.4:+17892285 | MS.gene34965:CDS |
TGTGTAGCCATCTAGCTTCA+GGG | 0.426156 | 4.4:+17893290 | MS.gene34965:CDS |
TAGGTAGGAGCAAATTTGAT+TGG | 0.432972 | 4.4:-17894227 | None:intergenic |
TGGAAAGGGTTTGAAGCAAC+TGG | 0.436830 | 4.4:+17894701 | MS.gene34965:CDS |
TTCCTTATTAGAAAATGATC+AGG | 0.438935 | 4.4:+17894064 | MS.gene34965:CDS |
TCTACGTTTAAATCTTCATC+TGG | 0.441644 | 4.4:-17892274 | None:intergenic |
AGTAAGCGTGTCGTTTCCTC+TGG | 0.445903 | 4.4:-17894020 | None:intergenic |
ATGAATGGCAACAATTTAAG+AGG | 0.447227 | 4.4:+17894191 | MS.gene34965:CDS |
TAACATGTGGCCTACATTAG+TGG | 0.470394 | 4.4:+17891961 | None:intergenic |
TGCAGTCATGTAATATTGCT+TGG | 0.474593 | 4.4:+17893972 | MS.gene34965:intron |
AGGATAATCTGCTATGAAGT+TGG | 0.477080 | 4.4:-17892017 | None:intergenic |
ATGTATAATTAGCAAACAAA+TGG | 0.477259 | 4.4:+17892606 | MS.gene34965:CDS |
CAACCTATGCATGACACACT+TGG | 0.485601 | 4.4:-17892685 | None:intergenic |
TTTGTTAGTACATGGAACAT+AGG | 0.487262 | 4.4:+17892241 | MS.gene34965:CDS |
TTATTAATTTCTTACCAAGC+TGG | 0.488567 | 4.4:-17894323 | None:intergenic |
TTGGAATATTCATATCTGTA+TGG | 0.499275 | 4.4:+17892629 | MS.gene34965:CDS |
TTTGGACAATATTTGTAGGT+AGG | 0.503958 | 4.4:-17894242 | None:intergenic |
TTTGTTTGCTAATTATACAT+TGG | 0.521389 | 4.4:-17892603 | None:intergenic |
CGAATAGTATGGTATGGAAA+GGG | 0.522693 | 4.4:+17894687 | MS.gene34965:intron |
ACACTTGGATGTTGAATGAA+TGG | 0.524578 | 4.4:-17892670 | None:intergenic |
TGTGATCGAATAGTATGGTA+TGG | 0.524935 | 4.4:+17894681 | MS.gene34965:intron |
AAACGTAGATGATTTGTTGG+AGG | 0.529826 | 4.4:+17892288 | MS.gene34965:CDS |
TATTATGGTTGCTGTTGTCA+TGG | 0.533129 | 4.4:+17894275 | MS.gene34965:CDS |
TTTCTTGGCAATTCAAACAA+AGG | 0.536236 | 4.4:-17893388 | None:intergenic |
CTAATGATGGAGTTAATGAA+TGG | 0.537149 | 4.4:+17894176 | MS.gene34965:CDS |
AAGAAGGGGATGAGAAGTGT+AGG | 0.538109 | 4.4:+17893317 | MS.gene34965:CDS |
ATAATTAGCAAACAAATGGT+TGG | 0.541121 | 4.4:+17892610 | MS.gene34965:CDS |
TTAGTACATGGAACATAGGT+GGG | 0.544468 | 4.4:+17892245 | MS.gene34965:CDS |
AATTCAAACAAAGGACCTCT+AGG | 0.548525 | 4.4:-17893379 | None:intergenic |
AATGGGAATGAAGCTAATGA+TGG | 0.553046 | 4.4:+17894163 | MS.gene34965:intron |
GTTAGTACATGGAACATAGG+TGG | 0.556986 | 4.4:+17892244 | MS.gene34965:CDS |
ATCTTATTAGCCACTAATGT+AGG | 0.560756 | 4.4:-17891971 | None:intergenic |
AAGATACTCAAGAAGCGACT+AGG | 0.561529 | 4.4:+17891989 | MS.gene34965:CDS |
TCGAATAGTATGGTATGGAA+AGG | 0.568491 | 4.4:+17894686 | MS.gene34965:intron |
AAAAGAGGCGAGCACCAGCT+TGG | 0.572374 | 4.4:+17894309 | MS.gene34965:CDS |
CATCCAAGTGTGTCATGCAT+AGG | 0.576317 | 4.4:+17892682 | MS.gene34965:CDS |
ATGGCAACAATTTAAGAGGA+TGG | 0.577966 | 4.4:+17894195 | MS.gene34965:CDS |
AATTTAAGAGGATGGCATGA+AGG | 0.581584 | 4.4:+17894203 | MS.gene34965:CDS |
ATTATGGTTGCTGTTGTCAT+GGG | 0.595205 | 4.4:+17894276 | MS.gene34965:CDS |
GTGTAGCCATCTAGCTTCAG+GGG | 0.595621 | 4.4:+17893291 | MS.gene34965:CDS |
CCCAAGTACATAGATGTCAC+AGG | 0.603987 | 4.4:-17892323 | None:intergenic |
ACATTGGAAATCATCATGTG+TGG | 0.610903 | 4.4:-17892587 | None:intergenic |
AACAAAGGTTCATCATAACT+AGG | 0.611095 | 4.4:-17892037 | None:intergenic |
CCTGTGACATCTATGTACTT+GGG | 0.620340 | 4.4:+17892323 | MS.gene34965:CDS |
AATGAGATGTTTAGGAAACA+AGG | 0.621139 | 4.4:+17892714 | MS.gene34965:CDS |
AACAGTTCCTAATCATCCCA+AGG | 0.629549 | 4.4:+17892090 | MS.gene34965:CDS |
ATGTCTGCAAAATTCAACAA+AGG | 0.633351 | 4.4:-17892052 | None:intergenic |
TCTAGGACTAGCTTTCCTAG+AGG | 0.647556 | 4.4:+17893364 | MS.gene34965:CDS |
TGAAGCAACTGGAGTACACA+AGG | 0.653687 | 4.4:+17894712 | MS.gene34965:CDS |
TTATAGGATATCTCTTCCAG+AGG | 0.665637 | 4.4:+17894004 | MS.gene34965:CDS |
TATTCATATCTGTATGGACA+AGG | 0.666150 | 4.4:+17892635 | MS.gene34965:CDS |
AGTGTGTCATGCATAGGTTG+TGG | 0.684284 | 4.4:+17892688 | MS.gene34965:CDS |
TGTAGCCATCTAGCTTCAGG+GGG | 0.696209 | 4.4:+17893292 | MS.gene34965:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AGATTAACATATTAATATTT+TGG | - | chr4.4:17893648-17893667 | None:intergenic | 10.0% |
!!! | TTTAAAGAGAATTTTTTTAA+TGG | - | chr4.4:17894115-17894134 | None:intergenic | 10.0% |
!! | AAGTAAAAAAAAATTATCCA+TGG | - | chr4.4:17894591-17894610 | None:intergenic | 15.0% |
!!! | TGTTTGTTATTCTTAATTTT+AGG | + | chr4.4:17894658-17894677 | MS.gene34965:intron | 15.0% |
!!! | TTAACATATTAATATTTTGG+AGG | - | chr4.4:17893645-17893664 | None:intergenic | 15.0% |
!!! | TTTGTTTATTTTTCTTGTAA+AGG | + | chr4.4:17892215-17892234 | MS.gene34965:intron | 15.0% |
!!! | TTTTCATGATTTATTATGAA+AGG | - | chr4.4:17893518-17893537 | None:intergenic | 15.0% |
!! | AAAATATCAAGCTTGAAATT+TGG | + | chr4.4:17892968-17892987 | MS.gene34965:intron | 20.0% |
!! | ACAATATTAGAAATGTTAAG+AGG | - | chr4.4:17892195-17892214 | None:intergenic | 20.0% |
!! | ACAATGAAATTTCCAATAAA+TGG | + | chr4.4:17892506-17892525 | MS.gene34965:CDS | 20.0% |
!! | AGTAGTATTAGAAATCAAAT+TGG | - | chr4.4:17893451-17893470 | None:intergenic | 20.0% |
!! | ATATTAATTTCATATGGAGT+TGG | - | chr4.4:17892774-17892793 | None:intergenic | 20.0% |
!! | ATGTATAATTAGCAAACAAA+TGG | + | chr4.4:17892606-17892625 | MS.gene34965:CDS | 20.0% |
!! | ATTATTAAATTAAACGCAAG+AGG | - | chr4.4:17893489-17893508 | None:intergenic | 20.0% |
!! | CATAATAAATCATGAAAACA+AGG | + | chr4.4:17893520-17893539 | MS.gene34965:intron | 20.0% |
!! | TTATTAAATTAAACGCAAGA+GGG | - | chr4.4:17893488-17893507 | None:intergenic | 20.0% |
!!! | ATATTTACAACGTTTTTCTT+TGG | - | chr4.4:17893778-17893797 | None:intergenic | 20.0% |
!!! | ATTCTAAACATGTTTTTCTA+TGG | - | chr4.4:17892382-17892401 | None:intergenic | 20.0% |
!!! | TTTGTTTGCTAATTATACAT+TGG | - | chr4.4:17892606-17892625 | None:intergenic | 20.0% |
!!! | TTTTAGTCTTTTTAGACTAT+TGG | - | chr4.4:17893165-17893184 | None:intergenic | 20.0% |
! | ACAGTATGTGATTAATTATG+TGG | - | chr4.4:17893943-17893962 | None:intergenic | 25.0% |
! | AGAATATTGATCATTAGTGA+CGG | - | chr4.4:17893595-17893614 | None:intergenic | 25.0% |
! | ATAATTAGCAAACAAATGGT+TGG | + | chr4.4:17892610-17892629 | MS.gene34965:CDS | 25.0% |
! | ATAGCACATAAAATTCAGTT+AGG | + | chr4.4:17894538-17894557 | MS.gene34965:intron | 25.0% |
! | ATTTCAGCCAACAAAATATT+TGG | - | chr4.4:17893547-17893566 | None:intergenic | 25.0% |
! | CCAAATTCGGATATATATTA+TGG | + | chr4.4:17894260-17894279 | MS.gene34965:CDS | 25.0% |
! | CCATAATATATATCCGAATT+TGG | - | chr4.4:17894263-17894282 | None:intergenic | 25.0% |
! | CTAAAAGCTTCAAATGTATT+GGG | + | chr4.4:17892475-17892494 | MS.gene34965:CDS | 25.0% |
! | CTAATTTAATTGCATCCAAT+GGG | + | chr4.4:17894146-17894165 | MS.gene34965:intron | 25.0% |
! | CTACAAATATTGTCCAAATT+CGG | + | chr4.4:17894247-17894266 | MS.gene34965:CDS | 25.0% |
! | CTCATTAATCAATTAGTATG+TGG | - | chr4.4:17893856-17893875 | None:intergenic | 25.0% |
! | CTGGTAGTATATAATATAGT+GGG | + | chr4.4:17893730-17893749 | MS.gene34965:intron | 25.0% |
! | GATTATGGAATTCCATTTAT+TGG | - | chr4.4:17892521-17892540 | None:intergenic | 25.0% |
! | GTATTAGAAATCAAATTGGA+CGG | - | chr4.4:17893447-17893466 | None:intergenic | 25.0% |
! | TCTAAAAGCTTCAAATGTAT+TGG | + | chr4.4:17892474-17892493 | MS.gene34965:CDS | 25.0% |
! | TCTAATTTAATTGCATCCAA+TGG | + | chr4.4:17894145-17894164 | MS.gene34965:intron | 25.0% |
! | TCTGGTAGTATATAATATAG+TGG | + | chr4.4:17893729-17893748 | MS.gene34965:intron | 25.0% |
! | TGCTTGGAGATTTAAATTAT+AGG | + | chr4.4:17893988-17894007 | MS.gene34965:CDS | 25.0% |
! | TTATTAATTTCTTACCAAGC+TGG | - | chr4.4:17894326-17894345 | None:intergenic | 25.0% |
! | TTCCTTATTAGAAAATGATC+AGG | + | chr4.4:17894064-17894083 | MS.gene34965:CDS | 25.0% |
! | TTGGAATATTCATATCTGTA+TGG | + | chr4.4:17892629-17892648 | MS.gene34965:CDS | 25.0% |
!! | AAAGGATTTTTGTTAGTACA+TGG | + | chr4.4:17892233-17892252 | MS.gene34965:intron | 25.0% |
!! | AACCTGATCATTTTCTAATA+AGG | - | chr4.4:17894069-17894088 | None:intergenic | 25.0% |
!! | AAGATTTTCAGTTAACCAAT+GGG | - | chr4.4:17893108-17893127 | None:intergenic | 25.0% |
!! | ATTCAAAGCTTTTCTGATTA+TGG | - | chr4.4:17892536-17892555 | None:intergenic | 25.0% |
!! | TAAAAGTGTGTAGTATAAAG+TGG | - | chr4.4:17894568-17894587 | None:intergenic | 25.0% |
!! | TAAGATTTTCAGTTAACCAA+TGG | - | chr4.4:17893109-17893128 | None:intergenic | 25.0% |
!! | TTCAAATTGTTACTTACTCA+TGG | - | chr4.4:17893423-17893442 | None:intergenic | 25.0% |
!! | TTTAAACGTAGATGATTTGT+TGG | + | chr4.4:17892285-17892304 | MS.gene34965:CDS | 25.0% |
!!! | AATACATTTGAAGCTTTTAG+AGG | - | chr4.4:17892475-17892494 | None:intergenic | 25.0% |
!!! | AATCAGAAAAGCTTTGAATA+AGG | + | chr4.4:17892537-17892556 | MS.gene34965:CDS | 25.0% |
!!! | ATGTTGCTGAAATTTTTTCT+AGG | + | chr4.4:17893347-17893366 | MS.gene34965:CDS | 25.0% |
!!! | GTTCTGTTTTATTACAATTC+AGG | + | chr4.4:17892434-17892453 | MS.gene34965:intron | 25.0% |
AACAAAGGTTCATCATAACT+AGG | - | chr4.4:17892040-17892059 | None:intergenic | 30.0% | |
AATGAGATGTTTAGGAAACA+AGG | + | chr4.4:17892714-17892733 | MS.gene34965:CDS | 30.0% | |
ACTAAAATCATGCATCTCAT+TGG | + | chr4.4:17893178-17893197 | MS.gene34965:intron | 30.0% | |
ACTTGTAGAGAAAAAAGACT+GGG | + | chr4.4:17894040-17894059 | MS.gene34965:CDS | 30.0% | |
AGTGATATATGACATATGTG+AGG | - | chr4.4:17892820-17892839 | None:intergenic | 30.0% | |
ATATGACATATGTGAGGTTA+TGG | - | chr4.4:17892814-17892833 | None:intergenic | 30.0% | |
ATCTTATTAGCCACTAATGT+AGG | - | chr4.4:17891974-17891993 | None:intergenic | 30.0% | |
ATGAATGGCAACAATTTAAG+AGG | + | chr4.4:17894191-17894210 | MS.gene34965:CDS | 30.0% | |
ATGGGAAAAAGATAGAAAAG+AGG | + | chr4.4:17894294-17894313 | MS.gene34965:CDS | 30.0% | |
ATGTCTGCAAAATTCAACAA+AGG | - | chr4.4:17892055-17892074 | None:intergenic | 30.0% | |
CACATAAAATTCAGTTAGGT+TGG | + | chr4.4:17894542-17894561 | MS.gene34965:intron | 30.0% | |
CGAATTTGGACAATATTTGT+AGG | - | chr4.4:17894249-17894268 | None:intergenic | 30.0% | |
TACTTGTAGAGAAAAAAGAC+TGG | + | chr4.4:17894039-17894058 | MS.gene34965:CDS | 30.0% | |
TATACTACCAGAAAACAGAT+AGG | - | chr4.4:17893721-17893740 | None:intergenic | 30.0% | |
TATGGTAGCTATACAAAACA+TGG | - | chr4.4:17892364-17892383 | None:intergenic | 30.0% | |
TATGTGGTTAACTGTAACAT+TGG | - | chr4.4:17893840-17893859 | None:intergenic | 30.0% | |
TATTCATATCTGTATGGACA+AGG | + | chr4.4:17892635-17892654 | MS.gene34965:CDS | 30.0% | |
TCTACGTTTAAATCTTCATC+TGG | - | chr4.4:17892277-17892296 | None:intergenic | 30.0% | |
TGATCAATATTCTCCAACTT+TGG | + | chr4.4:17893602-17893621 | MS.gene34965:intron | 30.0% | |
TTGTATTTGTGTTTGTCCTT+GGG | - | chr4.4:17892109-17892128 | None:intergenic | 30.0% | |
TTTCTTGGCAATTCAAACAA+AGG | - | chr4.4:17893391-17893410 | None:intergenic | 30.0% | |
TTTGGACAATATTTGTAGGT+AGG | - | chr4.4:17894245-17894264 | None:intergenic | 30.0% | |
TTTGTTAGTACATGGAACAT+AGG | + | chr4.4:17892241-17892260 | MS.gene34965:CDS | 30.0% | |
! | ACAAGGTCCAAATATTTTGT+TGG | + | chr4.4:17893537-17893556 | MS.gene34965:intron | 30.0% |
! | ATGGAGTTGGTTATAGTTAT+AGG | - | chr4.4:17892761-17892780 | None:intergenic | 30.0% |
! | CTAATGATGGAGTTAATGAA+TGG | + | chr4.4:17894176-17894195 | MS.gene34965:CDS | 30.0% |
! | TATACTACACACTTTTACCA+TGG | + | chr4.4:17894571-17894590 | MS.gene34965:intron | 30.0% |
! | TCATGGTCTAGAATATTTCT+TGG | - | chr4.4:17893406-17893425 | None:intergenic | 30.0% |
!! | TAGTATATAATATAGTGGGC+CGG | + | chr4.4:17893734-17893753 | MS.gene34965:intron | 30.0% |
!! | TCTACACCAATTAATTTGCA+GGG | + | chr4.4:17893220-17893239 | MS.gene34965:intron | 30.0% |
!! | TTATAGGCTTATAGCCTTAT+AGG | - | chr4.4:17892745-17892764 | None:intergenic | 30.0% |
!! | TTCTACACCAATTAATTTGC+AGG | + | chr4.4:17893219-17893238 | MS.gene34965:intron | 30.0% |
!! | TTGTACACCAATTAATTTGC+AGG | + | chr4.4:17893130-17893149 | MS.gene34965:intron | 30.0% |
!!! | TTTGGAGGCATTTTTTCTAT+GGG | - | chr4.4:17893630-17893649 | None:intergenic | 30.0% |
!!! | TTTTGGAGGCATTTTTTCTA+TGG | - | chr4.4:17893631-17893650 | None:intergenic | 30.0% |
AATGGGAATGAAGCTAATGA+TGG | + | chr4.4:17894163-17894182 | MS.gene34965:intron | 35.0% | |
AATGTCGTCTATGTTTGTGT+TGG | - | chr4.4:17894392-17894411 | None:intergenic | 35.0% | |
AATTCAAACAAAGGACCTCT+AGG | - | chr4.4:17893382-17893401 | None:intergenic | 35.0% | |
AATTTAAGAGGATGGCATGA+AGG | + | chr4.4:17894203-17894222 | MS.gene34965:CDS | 35.0% | |
ACACTTGGATGTTGAATGAA+TGG | - | chr4.4:17892673-17892692 | None:intergenic | 35.0% | |
ACAGAACCCTGCAAATTAAT+TGG | - | chr4.4:17893229-17893248 | None:intergenic | 35.0% | |
ACATTGGAAATCATCATGTG+TGG | - | chr4.4:17892590-17892609 | None:intergenic | 35.0% | |
AGGATAATCTGCTATGAAGT+TGG | - | chr4.4:17892020-17892039 | None:intergenic | 35.0% | |
ATCTTCTGATCACTAGTACT+TGG | + | chr4.4:17892147-17892166 | MS.gene34965:intron | 35.0% | |
ATGGCAACAATTTAAGAGGA+TGG | + | chr4.4:17894195-17894214 | MS.gene34965:CDS | 35.0% | |
ATGTGTGTGATTGTTCTTAC+CGG | - | chr4.4:17892865-17892884 | None:intergenic | 35.0% | |
CAATAGTGTTCTACATGTGT+CGG | - | chr4.4:17894501-17894520 | None:intergenic | 35.0% | |
CGAATAGTATGGTATGGAAA+GGG | + | chr4.4:17894687-17894706 | MS.gene34965:intron | 35.0% | |
CTATACAAAACATGGATCAG+TGG | - | chr4.4:17892356-17892375 | None:intergenic | 35.0% | |
CTTGTATTTGTGTTTGTCCT+TGG | - | chr4.4:17892110-17892129 | None:intergenic | 35.0% | |
GCAGAAACCTGCAAATTAAT+TGG | - | chr4.4:17893140-17893159 | None:intergenic | 35.0% | |
GTAACTTTCTATTTACGCAC+CGG | - | chr4.4:17893756-17893775 | None:intergenic | 35.0% | |
TAGGTAGGAGCAAATTTGAT+TGG | - | chr4.4:17894230-17894249 | None:intergenic | 35.0% | |
TCACTTGTCAACATTCGATT+TGG | + | chr4.4:17892835-17892854 | MS.gene34965:intron | 35.0% | |
TCGAATAGTATGGTATGGAA+AGG | + | chr4.4:17894686-17894705 | MS.gene34965:intron | 35.0% | |
TGCAGTCATGTAATATTGCT+TGG | + | chr4.4:17893972-17893991 | MS.gene34965:intron | 35.0% | |
TGTGATCGAATAGTATGGTA+TGG | + | chr4.4:17894681-17894700 | MS.gene34965:intron | 35.0% | |
TGTGGCATAATGAGATGTTT+AGG | + | chr4.4:17892706-17892725 | MS.gene34965:CDS | 35.0% | |
TTAGGTGTGATCGAATAGTA+TGG | + | chr4.4:17894676-17894695 | MS.gene34965:intron | 35.0% | |
TTAGTACATGGAACATAGGT+GGG | + | chr4.4:17892245-17892264 | MS.gene34965:CDS | 35.0% | |
TTATAGGATATCTCTTCCAG+AGG | + | chr4.4:17894004-17894023 | MS.gene34965:CDS | 35.0% | |
! | ATCATTAGCTTCATTCCCAT+TGG | - | chr4.4:17894164-17894183 | None:intergenic | 35.0% |
! | ATTATGGTTGCTGTTGTCAT+GGG | + | chr4.4:17894276-17894295 | MS.gene34965:CDS | 35.0% |
! | TATTATGGTTGCTGTTGTCA+TGG | + | chr4.4:17894275-17894294 | MS.gene34965:CDS | 35.0% |
!! | AAACGTAGATGATTTGTTGG+AGG | + | chr4.4:17892288-17892307 | MS.gene34965:CDS | 35.0% |
!! | AAAGTGTCCTATCTGTTTTC+TGG | + | chr4.4:17893711-17893730 | MS.gene34965:intron | 35.0% |
!! | TTTTAAAAGGTCGACGTTGA+CGG | - | chr4.4:17893059-17893078 | None:intergenic | 35.0% |
!!! | GACTATTGGCTGCTTTTAAA+AGG | - | chr4.4:17893072-17893091 | None:intergenic | 35.0% |
!!! | GATGCAAGGTTTTAGACTAT+TGG | - | chr4.4:17893086-17893105 | None:intergenic | 35.0% |
!!! | TTGGAGGCATTTTTTCTATG+GGG | - | chr4.4:17893629-17893648 | None:intergenic | 35.0% |
AACAGTTCCTAATCATCCCA+AGG | + | chr4.4:17892090-17892109 | MS.gene34965:CDS | 40.0% | |
AAGATACTCAAGAAGCGACT+AGG | + | chr4.4:17891989-17892008 | MS.gene34965:CDS | 40.0% | |
CAATGTAACAACCACTGATG+TGG | - | chr4.4:17892899-17892918 | None:intergenic | 40.0% | |
CCTGTGACATCTATGTACTT+GGG | + | chr4.4:17892323-17892342 | MS.gene34965:CDS | 40.0% | |
GAAACAAGGTGAGACCTATA+AGG | + | chr4.4:17892728-17892747 | MS.gene34965:intron | 40.0% | |
GTTAGTACATGGAACATAGG+TGG | + | chr4.4:17892244-17892263 | MS.gene34965:CDS | 40.0% | |
TCATGCAGTAAGCACATTAG+TGG | - | chr4.4:17893004-17893023 | None:intergenic | 40.0% | |
TCCTGTGACATCTATGTACT+TGG | + | chr4.4:17892322-17892341 | MS.gene34965:CDS | 40.0% | |
TGTTTGTCCTTGGGATGATT+AGG | - | chr4.4:17892100-17892119 | None:intergenic | 40.0% | |
! | TCTAAAACCTTGCATCCCAT+TGG | + | chr4.4:17893090-17893109 | MS.gene34965:intron | 40.0% |
! | TTTTCTATGGGGACCAAAGT+TGG | - | chr4.4:17893618-17893637 | None:intergenic | 40.0% |
!! | CAACATTCGATTTGGATTGC+CGG | + | chr4.4:17892843-17892862 | MS.gene34965:intron | 40.0% |
AGTGTGTCATGCATAGGTTG+TGG | + | chr4.4:17892688-17892707 | MS.gene34965:CDS | 45.0% | |
CAACCTATGCATGACACACT+TGG | - | chr4.4:17892688-17892707 | None:intergenic | 45.0% | |
CAGTTAACCAATGGGATGCA+AGG | - | chr4.4:17893100-17893119 | None:intergenic | 45.0% | |
CATCCAAGTGTGTCATGCAT+AGG | + | chr4.4:17892682-17892701 | MS.gene34965:CDS | 45.0% | |
CCCAAGTACATAGATGTCAC+AGG | - | chr4.4:17892326-17892345 | None:intergenic | 45.0% | |
GGTGTATTCCAACATGACAC+AGG | - | chr4.4:17894480-17894499 | None:intergenic | 45.0% | |
TATGTGAGCCTGTGTCATGT+TGG | + | chr4.4:17894469-17894488 | MS.gene34965:intron | 45.0% | |
TGAAGCAACTGGAGTACACA+AGG | + | chr4.4:17894712-17894731 | MS.gene34965:CDS | 45.0% | |
! | AAGAAGGGGATGAGAAGTGT+AGG | + | chr4.4:17893317-17893336 | MS.gene34965:CDS | 45.0% |
! | ACAAGTTGAGAGAGCTAGAG+AGG | - | chr4.4:17893885-17893904 | None:intergenic | 45.0% |
! | CAAGTTGAGAGAGCTAGAGA+GGG | - | chr4.4:17893884-17893903 | None:intergenic | 45.0% |
! | TGGAAAGGGTTTGAAGCAAC+TGG | + | chr4.4:17894701-17894720 | MS.gene34965:CDS | 45.0% |
! | TGTGTAGCCATCTAGCTTCA+GGG | + | chr4.4:17893290-17893309 | MS.gene34965:CDS | 45.0% |
!! | TCTAGGACTAGCTTTCCTAG+AGG | + | chr4.4:17893364-17893383 | MS.gene34965:CDS | 45.0% |
!! | TTAATAATATTAATTTCATA+TGG | - | chr4.4:17892780-17892799 | None:intergenic | 5.0% |
TAGCTTCAGGGGGCAAAGAA+GGG | + | chr4.4:17893302-17893321 | MS.gene34965:CDS | 50.0% | |
TCACGTAGCTACCACATCAG+TGG | + | chr4.4:17892885-17892904 | MS.gene34965:intron | 50.0% | |
! | GTGTAGCCATCTAGCTTCAG+GGG | + | chr4.4:17893291-17893310 | MS.gene34965:CDS | 50.0% |
! | GTGTGTAGCCATCTAGCTTC+AGG | + | chr4.4:17893289-17893308 | MS.gene34965:CDS | 50.0% |
! | TGTAGCCATCTAGCTTCAGG+GGG | + | chr4.4:17893292-17893311 | MS.gene34965:CDS | 50.0% |
!! | AAGGTCGACGTTGACGGATT+TGG | - | chr4.4:17893053-17893072 | None:intergenic | 50.0% |
!! | AGTAAGCGTGTCGTTTCCTC+TGG | - | chr4.4:17894023-17894042 | None:intergenic | 50.0% |
AAAAGAGGCGAGCACCAGCT+TGG | + | chr4.4:17894309-17894328 | MS.gene34965:CDS | 55.0% | |
AGCTTCAGGGGGCAAAGAAG+GGG | + | chr4.4:17893303-17893322 | MS.gene34965:CDS | 55.0% | |
CTAGCTTCAGGGGGCAAAGA+AGG | + | chr4.4:17893301-17893320 | MS.gene34965:CDS | 55.0% | |
CTTTGCCCCCTGAAGCTAGA+TGG | - | chr4.4:17893300-17893319 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 17891965 | 17894739 | 17891965 | ID=MS.gene34965 |
chr4.4 | mRNA | 17891965 | 17894739 | 17891965 | ID=MS.gene34965.t1;Parent=MS.gene34965 |
chr4.4 | exon | 17891965 | 17892128 | 17891965 | ID=MS.gene34965.t1.exon1;Parent=MS.gene34965.t1 |
chr4.4 | CDS | 17891965 | 17892128 | 17891965 | ID=cds.MS.gene34965.t1;Parent=MS.gene34965.t1 |
chr4.4 | exon | 17892237 | 17892344 | 17892237 | ID=MS.gene34965.t1.exon2;Parent=MS.gene34965.t1 |
chr4.4 | CDS | 17892237 | 17892344 | 17892237 | ID=cds.MS.gene34965.t1;Parent=MS.gene34965.t1 |
chr4.4 | exon | 17892456 | 17892735 | 17892456 | ID=MS.gene34965.t1.exon3;Parent=MS.gene34965.t1 |
chr4.4 | CDS | 17892456 | 17892735 | 17892456 | ID=cds.MS.gene34965.t1;Parent=MS.gene34965.t1 |
chr4.4 | exon | 17893241 | 17893425 | 17893241 | ID=MS.gene34965.t1.exon4;Parent=MS.gene34965.t1 |
chr4.4 | CDS | 17893241 | 17893425 | 17893241 | ID=cds.MS.gene34965.t1;Parent=MS.gene34965.t1 |
chr4.4 | exon | 17893977 | 17894085 | 17893977 | ID=MS.gene34965.t1.exon5;Parent=MS.gene34965.t1 |
chr4.4 | CDS | 17893977 | 17894085 | 17893977 | ID=cds.MS.gene34965.t1;Parent=MS.gene34965.t1 |
chr4.4 | exon | 17894176 | 17894330 | 17894176 | ID=MS.gene34965.t1.exon6;Parent=MS.gene34965.t1 |
chr4.4 | CDS | 17894176 | 17894330 | 17894176 | ID=cds.MS.gene34965.t1;Parent=MS.gene34965.t1 |
chr4.4 | exon | 17894694 | 17894739 | 17894694 | ID=MS.gene34965.t1.exon7;Parent=MS.gene34965.t1 |
chr4.4 | CDS | 17894694 | 17894739 | 17894694 | ID=cds.MS.gene34965.t1;Parent=MS.gene34965.t1 |
Gene Sequence |
Protein sequence |