Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34982.t1 | RHN42304.1 | 80.2 | 1174 | 151 | 7 | 2 | 1119 | 9 | 1156 | 0.00E+00 | 1766.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34982.t1 | Q9LKW9 | 57.8 | 1103 | 414 | 15 | 31 | 1117 | 76 | 1143 | 0.0e+00 | 1181.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34982.t1 | A0A396GS19 | 80.2 | 1174 | 151 | 7 | 2 | 1119 | 9 | 1156 | 0.0e+00 | 1766.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051588 | MS.gene34982 | 0.840508 | 8.34E-58 | -1.69E-46 |
| MS.gene054920 | MS.gene34982 | 0.823059 | 1.70E-53 | -1.69E-46 |
| MS.gene059683 | MS.gene34982 | 0.820525 | 6.55E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34982.t1 | MTR_2g038400 | 80.208 | 96 | 9 | 1 | 72 | 157 | 11 | 106 | 8.80e-35 | 129 |
| MS.gene34982.t1 | MTR_2g028230 | 24.800 | 375 | 246 | 10 | 45 | 408 | 79 | 428 | 8.99e-15 | 79.0 |
| MS.gene34982.t1 | MTR_1g082440 | 24.848 | 330 | 218 | 11 | 52 | 360 | 81 | 401 | 3.42e-12 | 70.9 |
| MS.gene34982.t1 | MTR_3g055600 | 24.468 | 376 | 254 | 13 | 52 | 407 | 86 | 451 | 3.73e-12 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34982.t1 | AT2G01980 | 58.281 | 1105 | 410 | 16 | 30 | 1118 | 75 | 1144 | 0.0 | 1241 |
| MS.gene34982.t1 | AT1G14660 | 60.238 | 757 | 229 | 7 | 6 | 715 | 9 | 740 | 0.0 | 869 |
| MS.gene34982.t1 | AT1G14660 | 56.671 | 757 | 233 | 9 | 6 | 715 | 9 | 717 | 0.0 | 796 |
| MS.gene34982.t1 | AT1G79610 | 24.728 | 368 | 250 | 9 | 45 | 399 | 79 | 432 | 3.16e-21 | 99.8 |
| MS.gene34982.t1 | AT1G54370 | 25.602 | 332 | 222 | 10 | 45 | 361 | 78 | 399 | 2.36e-16 | 84.0 |
| MS.gene34982.t1 | AT5G55470 | 23.733 | 375 | 259 | 12 | 52 | 407 | 78 | 444 | 6.98e-12 | 70.1 |
Find 218 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGATGCATATTACTTATTT+TGG | 0.067979 | 4.4:+18089719 | None:intergenic |
| TTTCCCTTTCTAAATTATTT+TGG | 0.122514 | 4.4:-18095434 | MS.gene34982:CDS |
| TACCTGACATTGACAAATTT+TGG | 0.128783 | 4.4:+18088783 | None:intergenic |
| TGGAGGAACTTGTAGTAATT+TGG | 0.160820 | 4.4:+18091237 | None:intergenic |
| CAAGAGATTGCGGAAGTTTC+TGG | 0.169036 | 4.4:-18097758 | MS.gene34982:CDS |
| CAGTTAATTTCTCAAATATC+TGG | 0.190114 | 4.4:+18088999 | None:intergenic |
| TAGGAATTGGTATTGCTTTC+GGG | 0.213714 | 4.4:-18098124 | MS.gene34982:CDS |
| GCAATGCAGCTGAGCATATA+TGG | 0.243154 | 4.4:-18087887 | MS.gene34982:CDS |
| CAGATATTTGAGAAATTAAC+TGG | 0.250897 | 4.4:-18088998 | MS.gene34982:CDS |
| TTGTGCTAGAAATTTGATTA+TGG | 0.252772 | 4.4:+18098240 | None:intergenic |
| AATGGAAGTTCACCAAATTA+AGG | 0.271591 | 4.4:-18099743 | MS.gene34982:intron |
| GGTATTTGGTTAATTGCTAA+TGG | 0.290985 | 4.4:-18089588 | MS.gene34982:CDS |
| GTGCCAAGTCAAATGGTATT+TGG | 0.294072 | 4.4:-18089602 | MS.gene34982:CDS |
| AACAAAGCTTACATTACTTT+TGG | 0.299230 | 4.4:-18097594 | MS.gene34982:intron |
| TTAGATGCAGTCATCTTCTT+TGG | 0.302567 | 4.4:-18100324 | MS.gene34982:intron |
| GTAGGAATTGGTATTGCTTT+CGG | 0.306007 | 4.4:-18098125 | MS.gene34982:CDS |
| TGCGGAAGTTTCTGGTGTTT+TGG | 0.306437 | 4.4:-18097750 | MS.gene34982:CDS |
| AGACATACGAGTACGCCTTC+TGG | 0.310138 | 4.4:-18091989 | MS.gene34982:CDS |
| TCTTATTTGCTTCAACAAAA+AGG | 0.310303 | 4.4:+18089340 | None:intergenic |
| TCATCAAGGATCTTGTTATC+TGG | 0.313938 | 4.4:-18088131 | MS.gene34982:CDS |
| ATTCTTCTGCTGATAGCATT+AGG | 0.319627 | 4.4:+18091325 | None:intergenic |
| TAGGTGTCCAAGCTGCTTAT+TGG | 0.323143 | 4.4:-18091392 | MS.gene34982:CDS |
| AGGTGTCCAAGCTGCTTATT+GGG | 0.324755 | 4.4:-18091391 | MS.gene34982:CDS |
| CAATACTTTGGAAAGGAAAA+TGG | 0.327486 | 4.4:+18089027 | None:intergenic |
| CATACCATTGTTCCCATCTC+TGG | 0.330102 | 4.4:+18094249 | None:intergenic |
| AGCAGAAGAATCAATAGATT+TGG | 0.330834 | 4.4:-18091313 | MS.gene34982:CDS |
| AGGAGCTGCAACTGACAAAA+TGG | 0.337703 | 4.4:-18087117 | MS.gene34982:CDS |
| ATGTTAAATGAATATCTTCT+AGG | 0.340644 | 4.4:+18090210 | None:intergenic |
| TTCACTGTGGGCCAGTCAGC+AGG | 0.341866 | 4.4:+18092096 | None:intergenic |
| GCTATTATTCTCGTCTGGTC+AGG | 0.343297 | 4.4:-18095389 | MS.gene34982:CDS |
| CGCCTGGGATGGTTTGGAAA+TGG | 0.352549 | 4.4:-18099993 | MS.gene34982:CDS |
| AAGAAGGCAACCGAGTGATT+AGG | 0.356255 | 4.4:+18088893 | None:intergenic |
| GGAGGAACTTGTAGTAATTT+GGG | 0.360310 | 4.4:+18091238 | None:intergenic |
| GCCTGGGATGGTTTGGAAAT+GGG | 0.366855 | 4.4:-18099992 | MS.gene34982:CDS |
| CAAAATGAAAATTATTGTAT+TGG | 0.368873 | 4.4:+18096720 | None:intergenic |
| CGACAATTACATGATTTCAT+AGG | 0.370840 | 4.4:-18091108 | MS.gene34982:intron |
| TTGAGAATGCGCTCTCAAAA+AGG | 0.375667 | 4.4:+18099764 | None:intergenic |
| AGGAACTCGGGCCTGCTGAC+TGG | 0.382866 | 4.4:-18092107 | MS.gene34982:CDS |
| GTGACCACATTACAAATATA+TGG | 0.384008 | 4.4:+18089381 | None:intergenic |
| CGCATATCTTTCAAATTCAT+AGG | 0.384926 | 4.4:+18091934 | None:intergenic |
| CATCATCGCCTGGGATGGTT+TGG | 0.385198 | 4.4:-18099999 | MS.gene34982:CDS |
| TTCCAAAATTTGTCAATGTC+AGG | 0.387342 | 4.4:-18088785 | MS.gene34982:intron |
| GTCACTTTCACTATCGGTTA+AGG | 0.388684 | 4.4:-18095345 | MS.gene34982:intron |
| CACAGGAAGCTTTCCATTGA+AGG | 0.403856 | 4.4:+18089294 | None:intergenic |
| TGTCTCCCCTCTTATGTATA+CGG | 0.404891 | 4.4:+18088934 | None:intergenic |
| AAGAAGATGACTGCATCTAA+TGG | 0.407503 | 4.4:+18100327 | None:intergenic |
| TTTCATACTTTGTAAAATCA+AGG | 0.408654 | 4.4:+18092175 | None:intergenic |
| TTTACGCATGGGAGCACGTT+GGG | 0.411313 | 4.4:-18089429 | MS.gene34982:CDS |
| AGAAGGCAACCGAGTGATTA+GGG | 0.411359 | 4.4:+18088894 | None:intergenic |
| GATCGGTTCAGTGTAGGAAT+TGG | 0.414119 | 4.4:-18098137 | MS.gene34982:intron |
| TTCTGCCGGTAGAAATGTTC+AGG | 0.414745 | 4.4:+18087959 | None:intergenic |
| CGTATGTCTTTCGAATTCAT+AGG | 0.415486 | 4.4:+18092003 | None:intergenic |
| ACATTTCTACCGGCAGAATC+AGG | 0.420544 | 4.4:-18087954 | MS.gene34982:CDS |
| GATATTACCTTCTAGTAAGA+AGG | 0.422710 | 4.4:+18088877 | None:intergenic |
| AAAACAGCTAAGAGGAGGTC+TGG | 0.426144 | 4.4:+18099799 | None:intergenic |
| ATTACTTAGAAACCCTCCTT+TGG | 0.427736 | 4.4:-18089751 | MS.gene34982:CDS |
| AGCTTACTTTCCCGTATGGC+TGG | 0.427819 | 4.4:-18098669 | MS.gene34982:CDS |
| AACAAGGCTACAACAGCAAC+AGG | 0.437866 | 4.4:+18098598 | None:intergenic |
| GATTCCCATGTGAAGGAAGC+AGG | 0.439090 | 4.4:+18088813 | None:intergenic |
| CTTCTATCTGTGCTTTGTGA+AGG | 0.447598 | 4.4:+18087053 | None:intergenic |
| AGTTAATTTCTCAAATATCT+GGG | 0.447928 | 4.4:+18089000 | None:intergenic |
| GCTTCTTCCGTTGAGAATGA+TGG | 0.450720 | 4.4:-18100382 | MS.gene34982:CDS |
| CCTTGAGAAGGCTGGGATGT+TGG | 0.453967 | 4.4:-18089928 | MS.gene34982:CDS |
| GTTCAAAACCTTGAGAAGGC+TGG | 0.454877 | 4.4:-18089936 | MS.gene34982:CDS |
| TCACCACTTCCCCTCATGAC+TGG | 0.456814 | 4.4:+18086943 | None:intergenic |
| CAAGAACCATCCGATAGAAA+AGG | 0.458177 | 4.4:+18098284 | None:intergenic |
| AGTAATATGCATCCTATGTT+GGG | 0.461154 | 4.4:-18089711 | MS.gene34982:CDS |
| TAATTTGGGAAGTGCACGTT+AGG | 0.464021 | 4.4:+18091252 | None:intergenic |
| GAAATGACCGTATACATAAG+AGG | 0.465588 | 4.4:-18088941 | MS.gene34982:CDS |
| CAATTGAGTGCAGAGGTGTA+TGG | 0.465948 | 4.4:-18098834 | MS.gene34982:intron |
| TATCAAAACTCAAGGTCGTC+AGG | 0.466825 | 4.4:-18088858 | MS.gene34982:CDS |
| TCTAAGATCTGACCCTTCAA+TGG | 0.467624 | 4.4:-18089307 | MS.gene34982:CDS |
| TGCGTTGTCACTTTCACTAT+CGG | 0.472669 | 4.4:-18095351 | MS.gene34982:CDS |
| GTTGGATCTGACAAACTTTG+AGG | 0.472974 | 4.4:+18087185 | None:intergenic |
| TCGGTTGCCTTCTTACTAGA+AGG | 0.474188 | 4.4:-18088884 | MS.gene34982:CDS |
| GATTATGGCAAGCCAATTGA+AGG | 0.477945 | 4.4:+18098255 | None:intergenic |
| AAGTAATATGCATCCTATGT+TGG | 0.483562 | 4.4:-18089712 | MS.gene34982:CDS |
| GACAAACTTCTACTCTGGCC+AGG | 0.483877 | 4.4:+18087230 | None:intergenic |
| AATGACTTTGTTCATCCTCA+TGG | 0.485538 | 4.4:-18092054 | MS.gene34982:CDS |
| AAGAAGCTATTATTCTCGTC+TGG | 0.489581 | 4.4:-18095394 | MS.gene34982:CDS |
| TATCTGGGGAAGCAATACTT+TGG | 0.490033 | 4.4:+18089015 | None:intergenic |
| AAGGAAGGTGCCAAGTCAAA+TGG | 0.490831 | 4.4:-18089609 | MS.gene34982:CDS |
| CTTTCCCGTATGGCTGGAGT+TGG | 0.493163 | 4.4:-18098663 | MS.gene34982:CDS |
| TTCTTGGAGAGACCTTCAAT+TGG | 0.497489 | 4.4:-18098267 | MS.gene34982:CDS |
| CAGTTCATATTAGACTTCCT+TGG | 0.498001 | 4.4:-18093891 | MS.gene34982:CDS |
| ATATGGTACTCATCATCGCC+TGG | 0.498045 | 4.4:-18100009 | MS.gene34982:CDS |
| TCCCATTTCCAAACCATCCC+AGG | 0.498532 | 4.4:+18099991 | None:intergenic |
| TGGTTGACAAACTTCTACTC+TGG | 0.500880 | 4.4:+18087225 | None:intergenic |
| TTCTATCTGTGCTTTGTGAA+GGG | 0.506405 | 4.4:+18087054 | None:intergenic |
| ATATCCAAAATAATTTAGAA+AGG | 0.507755 | 4.4:+18095430 | None:intergenic |
| CTTTGATGTGGCACAATGGT+TGG | 0.508606 | 4.4:+18087167 | None:intergenic |
| AAGAACCATCCGATAGAAAA+GGG | 0.509455 | 4.4:+18098285 | None:intergenic |
| CAATGCAGCTGAGCATATAT+GGG | 0.509952 | 4.4:-18087886 | MS.gene34982:CDS |
| AATGGAAAGCTTCCTGTGGC+AGG | 0.510124 | 4.4:-18089289 | MS.gene34982:intron |
| TTCAAAACCTTGAGAAGGCT+GGG | 0.510199 | 4.4:-18089935 | MS.gene34982:CDS |
| CTTGGAGATGATGAGGAACT+CGG | 0.514506 | 4.4:-18092120 | MS.gene34982:CDS |
| ATGAACAAAGTCATTTAAGC+AGG | 0.515276 | 4.4:+18092062 | None:intergenic |
| GCAGCCCTGCTTCCTTCACA+TGG | 0.515748 | 4.4:-18088818 | MS.gene34982:CDS |
| CTATTATTCTCGTCTGGTCA+GGG | 0.517184 | 4.4:-18095388 | MS.gene34982:CDS |
| TTGGGAAGCTTAACCAAAGG+AGG | 0.518032 | 4.4:+18089738 | None:intergenic |
| TTACATACTTCACTGTGGAC+AGG | 0.518923 | 4.4:-18091188 | MS.gene34982:CDS |
| CTAATGAAGAAATTATTGTC+AGG | 0.519047 | 4.4:-18086995 | MS.gene34982:CDS |
| AATGGCTAATAAAGCATTGG+AGG | 0.519369 | 4.4:-18092154 | MS.gene34982:CDS |
| AACATAGTGCTATTATGAGT+TGG | 0.519544 | 4.4:-18087982 | MS.gene34982:CDS |
| ACATCTTCATGATGTTGTCC+AGG | 0.521338 | 4.4:-18089889 | MS.gene34982:intron |
| AGGTAGCGGTCTAGCACGAT+TGG | 0.523450 | 4.4:+18087205 | None:intergenic |
| TCTGTTTATCCTGATTCTGC+CGG | 0.523932 | 4.4:+18087945 | None:intergenic |
| TGTGAAGGAAGCAGGGCTGC+TGG | 0.525238 | 4.4:+18088821 | None:intergenic |
| TTTCTAGCACAAGTTTCACT+TGG | 0.526090 | 4.4:-18098229 | MS.gene34982:CDS |
| GTGTCTCGATGCATTGTAGT+TGG | 0.526694 | 4.4:-18095464 | MS.gene34982:CDS |
| GAAATATATCTCTTCACTGT+GGG | 0.526784 | 4.4:+18092084 | None:intergenic |
| GATGGTAGAGCACCCAACAT+AGG | 0.526933 | 4.4:+18089699 | None:intergenic |
| TATCCAAAATAATTTAGAAA+GGG | 0.528118 | 4.4:+18095431 | None:intergenic |
| TAACCAAATACCATTTGACT+TGG | 0.528639 | 4.4:+18089599 | None:intergenic |
| TGAAATGGCTAATAAAGCAT+TGG | 0.529135 | 4.4:-18092157 | MS.gene34982:CDS |
| CCAACATCCCAGCCTTCTCA+AGG | 0.529319 | 4.4:+18089928 | None:intergenic |
| AAATTAAGCACAATAATTGA+AGG | 0.531293 | 4.4:-18098553 | MS.gene34982:CDS |
| AAATGTTTCCAGTCACATAG+TGG | 0.531641 | 4.4:+18091279 | None:intergenic |
| GGGGAATCCGTGATGAATGA+TGG | 0.533122 | 4.4:-18098532 | MS.gene34982:CDS |
| GTAGCCTTGTTGAAAGAACT+TGG | 0.533598 | 4.4:-18098586 | MS.gene34982:CDS |
| GGCTTGACACTTTACAAGGA+AGG | 0.534192 | 4.4:-18089624 | MS.gene34982:CDS |
| AAATGACCGTATACATAAGA+GGG | 0.537678 | 4.4:-18088940 | MS.gene34982:CDS |
| AATTGAATTGACTCCAGAGA+TGG | 0.538356 | 4.4:-18094262 | MS.gene34982:CDS |
| TATTCATTTAACATACCCTC+AGG | 0.541649 | 4.4:-18090201 | MS.gene34982:intron |
| CTTGTCCAGGGTGGCTATTG+TGG | 0.543196 | 4.4:-18098314 | MS.gene34982:intron |
| ATACAGCTTACTTTCCCGTA+TGG | 0.543231 | 4.4:-18098673 | MS.gene34982:intron |
| AAAATGGACATTGGAGTGAA+GGG | 0.543464 | 4.4:-18087101 | MS.gene34982:CDS |
| CAAAATGGACATTGGAGTGA+AGG | 0.546225 | 4.4:-18087102 | MS.gene34982:CDS |
| ATGGTCGAAAGCACAACACC+TGG | 0.546683 | 4.4:+18098788 | None:intergenic |
| TAGTGAACTTGGAGATGATG+AGG | 0.547896 | 4.4:-18092127 | MS.gene34982:CDS |
| AAACAATAGTTTGTCTGCAA+AGG | 0.549172 | 4.4:-18087909 | MS.gene34982:CDS |
| GCATCTCCCAATAAGCAGCT+TGG | 0.549177 | 4.4:+18091385 | None:intergenic |
| AATTAAGCACAATAATTGAA+GGG | 0.550093 | 4.4:-18098552 | MS.gene34982:CDS |
| GCACAAATGATCTTACTAGC+TGG | 0.553176 | 4.4:-18098812 | MS.gene34982:CDS |
| GTACTCATCATCGCCTGGGA+TGG | 0.554419 | 4.4:-18100004 | MS.gene34982:CDS |
| AGGAAGCAGGGCTGCTGGTG+CGG | 0.555163 | 4.4:+18088826 | None:intergenic |
| TAATAGCACTATGTTGTCTA+CGG | 0.556493 | 4.4:+18087990 | None:intergenic |
| GAATAAGTTATCATCAGATA+AGG | 0.557229 | 4.4:-18093865 | MS.gene34982:intron |
| TCGATGGCAACATATTTGAC+TGG | 0.561700 | 4.4:+18091217 | None:intergenic |
| CATCTGAGCCACTATGTGAC+TGG | 0.562752 | 4.4:-18091287 | MS.gene34982:CDS |
| ATTGGGAGATGCTTGATGAA+AGG | 0.562803 | 4.4:-18091374 | MS.gene34982:CDS |
| GCGTGGCTTGACACTTTACA+AGG | 0.562824 | 4.4:-18089628 | MS.gene34982:CDS |
| ATTGAATTGACTCCAGAGAT+GGG | 0.562911 | 4.4:-18094261 | MS.gene34982:CDS |
| AATTGCTAATGGAGTGGTGA+AGG | 0.564103 | 4.4:-18089577 | MS.gene34982:intron |
| ACAGGAAGCTTTCCATTGAA+GGG | 0.564362 | 4.4:+18089295 | None:intergenic |
| ATGCGAGTACGCCTTCTGAA+TGG | 0.564762 | 4.4:-18091916 | MS.gene34982:intron |
| AGTGGTTCACGAACTGAAGA+TGG | 0.564992 | 4.4:+18089681 | None:intergenic |
| TTCTGCTGTAGGAAAGTCAT+GGG | 0.565333 | 4.4:-18095519 | MS.gene34982:intron |
| CTTGTTTCAGTCAAATCAGA+AGG | 0.567347 | 4.4:-18087137 | MS.gene34982:CDS |
| GTTCTGCTGTAGGAAAGTCA+TGG | 0.567976 | 4.4:-18095520 | MS.gene34982:intron |
| ATGATCTTACTAGCTGGTCC+AGG | 0.568671 | 4.4:-18098806 | MS.gene34982:CDS |
| GGTTCTATTCTGCATTTGCA+AGG | 0.569057 | 4.4:-18097639 | MS.gene34982:CDS |
| ATGATAACTTATTCATGCCA+AGG | 0.569926 | 4.4:+18093874 | None:intergenic |
| TCCTTTGTATCACTTACAAG+TGG | 0.573287 | 4.4:+18089663 | None:intergenic |
| TTCAGGGTTATTACATGCTG+CGG | 0.574831 | 4.4:-18088032 | MS.gene34982:CDS |
| TCTGACAAACTTTGAGGTAG+CGG | 0.575869 | 4.4:+18087191 | None:intergenic |
| GAATCAGGATAAACAGAGCT+CGG | 0.576296 | 4.4:-18087939 | MS.gene34982:CDS |
| GGGAATCCGTGATGAATGAT+GGG | 0.576373 | 4.4:-18098531 | MS.gene34982:intron |
| TTGGAGATGATGAGGAACTC+GGG | 0.577198 | 4.4:-18092119 | MS.gene34982:CDS |
| ATACTTCACTGTGGACAGGT+TGG | 0.578021 | 4.4:-18091184 | MS.gene34982:CDS |
| GAAGGTAATATCAAAACTCA+AGG | 0.582183 | 4.4:-18088866 | MS.gene34982:CDS |
| AGTGGAGTTATTATAGCTGA+AGG | 0.583086 | 4.4:-18096513 | MS.gene34982:CDS |
| ATGTTTGCATACCATTCAGA+AGG | 0.585121 | 4.4:+18091905 | None:intergenic |
| TCTGATTTGACTGAAACAAG+TGG | 0.588549 | 4.4:+18087140 | None:intergenic |
| CTCGTCTGGTCAGGGTTGCG+AGG | 0.592279 | 4.4:-18095380 | MS.gene34982:CDS |
| TTTATAGGCTCAAGAGATTG+CGG | 0.593853 | 4.4:-18097768 | MS.gene34982:intron |
| ATATGTTCAAAACCTTGAGA+AGG | 0.595089 | 4.4:-18089940 | MS.gene34982:CDS |
| AAGCTTCGATTCCCATGTGA+AGG | 0.595325 | 4.4:+18088806 | None:intergenic |
| ATTAAGCACAATAATTGAAG+GGG | 0.595881 | 4.4:-18098551 | MS.gene34982:CDS |
| ATCTGGTTGAAACTAGAGCA+AGG | 0.597676 | 4.4:-18088114 | MS.gene34982:CDS |
| ATTGTCGTCGAGCAATTCTG+TGG | 0.599392 | 4.4:+18091124 | None:intergenic |
| TATGGTACTCATCATCGCCT+GGG | 0.600996 | 4.4:-18100008 | MS.gene34982:CDS |
| TGGTTTGTTTAGCGTTCGAG+TGG | 0.601861 | 4.4:-18094291 | MS.gene34982:intron |
| AAAGTAGCCATACCTGCCAC+AGG | 0.603956 | 4.4:+18089277 | None:intergenic |
| GCAACTGACAAAATGGACAT+TGG | 0.604194 | 4.4:-18087110 | MS.gene34982:CDS |
| GTTGGCCTGAACATTTCTAC+CGG | 0.605391 | 4.4:-18087964 | MS.gene34982:CDS |
| TGGGAAGCTTAACCAAAGGA+GGG | 0.606880 | 4.4:+18089739 | None:intergenic |
| GACTCCAGAGATGGGAACAA+TGG | 0.609199 | 4.4:-18094253 | MS.gene34982:intron |
| GTTAATTTCTCAAATATCTG+GGG | 0.609819 | 4.4:+18089001 | None:intergenic |
| GGCACCAAGTTCTTTCAACA+AGG | 0.610772 | 4.4:+18098582 | None:intergenic |
| ACAAACTTCTACTCTGGCCA+GGG | 0.614534 | 4.4:+18087231 | None:intergenic |
| TGGCGAAAAGATAGTGTACT+CGG | 0.616707 | 4.4:+18086963 | None:intergenic |
| ACCACTTGTAAGTGATACAA+AGG | 0.617639 | 4.4:-18089664 | MS.gene34982:CDS |
| GGGGAAGCAATACTTTGGAA+AGG | 0.618372 | 4.4:+18089020 | None:intergenic |
| TTGTTTGCATACCATCCAGA+AGG | 0.620032 | 4.4:+18091974 | None:intergenic |
| TGTTGCTCCATCATTCTCAA+CGG | 0.620837 | 4.4:+18100375 | None:intergenic |
| GCTGAGCATATATGGGAGCA+TGG | 0.622094 | 4.4:-18087879 | MS.gene34982:intron |
| TTGGTTAATTGCTAATGGAG+TGG | 0.624617 | 4.4:-18089583 | MS.gene34982:CDS |
| ATTCCCATGTGAAGGAAGCA+GGG | 0.629890 | 4.4:+18088814 | None:intergenic |
| ATACGAGTACGCCTTCTGGA+TGG | 0.629962 | 4.4:-18091985 | MS.gene34982:CDS |
| AATTGAAATCCCTAATCACT+CGG | 0.631225 | 4.4:-18088903 | MS.gene34982:CDS |
| AAGTATGTAACTAACTTCGA+TGG | 0.631635 | 4.4:+18091201 | None:intergenic |
| AAGACCATATATTTGTAATG+TGG | 0.635480 | 4.4:-18089385 | MS.gene34982:CDS |
| TCTGGTTGAAACTAGAGCAA+GGG | 0.643646 | 4.4:-18088113 | MS.gene34982:CDS |
| ATGGCAACATATTTGACTGG+AGG | 0.644664 | 4.4:+18091220 | None:intergenic |
| AAATGGACATTGGAGTGAAG+GGG | 0.653817 | 4.4:-18087100 | MS.gene34982:CDS |
| TTGTCGTCGAGCAATTCTGT+GGG | 0.654214 | 4.4:+18091125 | None:intergenic |
| GGAAATATATCTCTTCACTG+TGG | 0.655927 | 4.4:+18092083 | None:intergenic |
| AAAGTACCCATCATTCATCA+CGG | 0.656493 | 4.4:+18098525 | None:intergenic |
| AAGGAAATGATGAAATTGCG+TGG | 0.657545 | 4.4:-18089645 | MS.gene34982:CDS |
| CAGCCCTGCTTCCTTCACAT+GGG | 0.658162 | 4.4:-18088817 | MS.gene34982:CDS |
| GATAGAAGAGTACATCGTGA+AGG | 0.664289 | 4.4:-18087038 | MS.gene34982:CDS |
| CTTCAATGGAAAGCTTCCTG+TGG | 0.665620 | 4.4:-18089293 | MS.gene34982:CDS |
| TGTCATTAATGAAAGTGTTG+TGG | 0.669302 | 4.4:-18090255 | MS.gene34982:CDS |
| ACGACTTTGATGTGGCACAA+TGG | 0.669564 | 4.4:+18087163 | None:intergenic |
| GATGGTATGCAAACAAGTGG+TGG | 0.673561 | 4.4:-18091967 | MS.gene34982:CDS |
| CATTAATGAAAGTGTTGTGG+AGG | 0.675311 | 4.4:-18090252 | MS.gene34982:CDS |
| CATGGTGCATCTGAAAGTGA+TGG | 0.675704 | 4.4:-18092036 | MS.gene34982:CDS |
| GGTCTTTATGAAGTGCTGAG+TGG | 0.681700 | 4.4:-18089408 | MS.gene34982:CDS |
| AGATATTTGAGAAATTAACT+GGG | 0.685392 | 4.4:-18088997 | MS.gene34982:CDS |
| CATATGCATAGAGAAGCAAG+AGG | 0.695865 | 4.4:+18095492 | None:intergenic |
| CTGGATGGTATGCAAACAAG+TGG | 0.696055 | 4.4:-18091970 | MS.gene34982:CDS |
| GTTAGTTACATACTTCACTG+TGG | 0.714802 | 4.4:-18091193 | MS.gene34982:CDS |
| AATGACCGTATACATAAGAG+GGG | 0.717659 | 4.4:-18088939 | MS.gene34982:CDS |
| ACAAGTGGACGACTTTGATG+TGG | 0.719152 | 4.4:+18087155 | None:intergenic |
| TCACTTTCAGATGCACCATG+AGG | 0.725058 | 4.4:+18092039 | None:intergenic |
| GAAGTCTAATATGAACTGTG+TGG | 0.756559 | 4.4:+18093896 | None:intergenic |
| TGTCTACGGAAAGATTTACG+AGG | 0.757206 | 4.4:+18088004 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 18086956 | 18100415 | 18086956 | ID=MS.gene34982 |
| chr4.4 | mRNA | 18086956 | 18100415 | 18086956 | ID=MS.gene34982.t1;Parent=MS.gene34982 |
| chr4.4 | exon | 18100325 | 18100415 | 18100325 | ID=MS.gene34982.t1.exon1;Parent=MS.gene34982.t1 |
| chr4.4 | CDS | 18100325 | 18100415 | 18100325 | ID=cds.MS.gene34982.t1;Parent=MS.gene34982.t1 |
| chr4.4 | exon | 18099982 | 18100032 | 18099982 | ID=MS.gene34982.t1.exon2;Parent=MS.gene34982.t1 |
| chr4.4 | CDS | 18099982 | 18100032 | 18099982 | ID=cds.MS.gene34982.t1;Parent=MS.gene34982.t1 |
| chr4.4 | exon | 18099744 | 18099835 | 18099744 | ID=MS.gene34982.t1.exon3;Parent=MS.gene34982.t1 |
| chr4.4 | CDS | 18099744 | 18099835 | 18099744 | ID=cds.MS.gene34982.t1;Parent=MS.gene34982.t1 |
| chr4.4 | exon | 18098766 | 18098843 | 18098766 | ID=MS.gene34982.t1.exon4;Parent=MS.gene34982.t1 |
| chr4.4 | CDS | 18098766 | 18098843 | 18098766 | ID=cds.MS.gene34982.t1;Parent=MS.gene34982.t1 |
| chr4.4 | exon | 18098532 | 18098689 | 18098532 | ID=MS.gene34982.t1.exon5;Parent=MS.gene34982.t1 |
| chr4.4 | CDS | 18098532 | 18098689 | 18098532 | ID=cds.MS.gene34982.t1;Parent=MS.gene34982.t1 |
| chr4.4 | exon | 18098226 | 18098327 | 18098226 | ID=MS.gene34982.t1.exon6;Parent=MS.gene34982.t1 |
| chr4.4 | CDS | 18098226 | 18098327 | 18098226 | ID=cds.MS.gene34982.t1;Parent=MS.gene34982.t1 |
| chr4.4 | exon | 18098031 | 18098148 | 18098031 | ID=MS.gene34982.t1.exon7;Parent=MS.gene34982.t1 |
| chr4.4 | CDS | 18098031 | 18098148 | 18098031 | ID=cds.MS.gene34982.t1;Parent=MS.gene34982.t1 |
| chr4.4 | exon | 18097731 | 18097783 | 18097731 | ID=MS.gene34982.t1.exon8;Parent=MS.gene34982.t1 |
| chr4.4 | CDS | 18097731 | 18097783 | 18097731 | ID=cds.MS.gene34982.t1;Parent=MS.gene34982.t1 |
| chr4.4 | exon | 18097595 | 18097660 | 18097595 | ID=MS.gene34982.t1.exon9;Parent=MS.gene34982.t1 |
| chr4.4 | CDS | 18097595 | 18097660 | 18097595 | ID=cds.MS.gene34982.t1;Parent=MS.gene34982.t1 |
| chr4.4 | exon | 18096718 | 18096762 | 18096718 | ID=MS.gene34982.t1.exon10;Parent=MS.gene34982.t1 |
| chr4.4 | CDS | 18096718 | 18096762 | 18096718 | ID=cds.MS.gene34982.t1;Parent=MS.gene34982.t1 |
| chr4.4 | exon | 18096481 | 18096533 | 18096481 | ID=MS.gene34982.t1.exon11;Parent=MS.gene34982.t1 |
| chr4.4 | CDS | 18096481 | 18096533 | 18096481 | ID=cds.MS.gene34982.t1;Parent=MS.gene34982.t1 |
| chr4.4 | exon | 18095346 | 18095530 | 18095346 | ID=MS.gene34982.t1.exon12;Parent=MS.gene34982.t1 |
| chr4.4 | CDS | 18095346 | 18095530 | 18095346 | ID=cds.MS.gene34982.t1;Parent=MS.gene34982.t1 |
| chr4.4 | exon | 18094254 | 18094301 | 18094254 | ID=MS.gene34982.t1.exon13;Parent=MS.gene34982.t1 |
| chr4.4 | CDS | 18094254 | 18094301 | 18094254 | ID=cds.MS.gene34982.t1;Parent=MS.gene34982.t1 |
| chr4.4 | exon | 18093866 | 18093973 | 18093866 | ID=MS.gene34982.t1.exon14;Parent=MS.gene34982.t1 |
| chr4.4 | CDS | 18093866 | 18093973 | 18093866 | ID=cds.MS.gene34982.t1;Parent=MS.gene34982.t1 |
| chr4.4 | exon | 18091917 | 18092205 | 18091917 | ID=MS.gene34982.t1.exon15;Parent=MS.gene34982.t1 |
| chr4.4 | CDS | 18091917 | 18092205 | 18091917 | ID=cds.MS.gene34982.t1;Parent=MS.gene34982.t1 |
| chr4.4 | exon | 18091109 | 18091411 | 18091109 | ID=MS.gene34982.t1.exon16;Parent=MS.gene34982.t1 |
| chr4.4 | CDS | 18091109 | 18091411 | 18091109 | ID=cds.MS.gene34982.t1;Parent=MS.gene34982.t1 |
| chr4.4 | exon | 18090202 | 18090299 | 18090202 | ID=MS.gene34982.t1.exon17;Parent=MS.gene34982.t1 |
| chr4.4 | CDS | 18090202 | 18090299 | 18090202 | ID=cds.MS.gene34982.t1;Parent=MS.gene34982.t1 |
| chr4.4 | exon | 18089890 | 18090021 | 18089890 | ID=MS.gene34982.t1.exon18;Parent=MS.gene34982.t1 |
| chr4.4 | CDS | 18089890 | 18090021 | 18089890 | ID=cds.MS.gene34982.t1;Parent=MS.gene34982.t1 |
| chr4.4 | exon | 18089578 | 18089787 | 18089578 | ID=MS.gene34982.t1.exon19;Parent=MS.gene34982.t1 |
| chr4.4 | CDS | 18089578 | 18089787 | 18089578 | ID=cds.MS.gene34982.t1;Parent=MS.gene34982.t1 |
| chr4.4 | exon | 18089290 | 18089496 | 18089290 | ID=MS.gene34982.t1.exon20;Parent=MS.gene34982.t1 |
| chr4.4 | CDS | 18089290 | 18089496 | 18089290 | ID=cds.MS.gene34982.t1;Parent=MS.gene34982.t1 |
| chr4.4 | exon | 18088786 | 18089056 | 18088786 | ID=MS.gene34982.t1.exon21;Parent=MS.gene34982.t1 |
| chr4.4 | CDS | 18088786 | 18089056 | 18088786 | ID=cds.MS.gene34982.t1;Parent=MS.gene34982.t1 |
| chr4.4 | exon | 18087880 | 18088175 | 18087880 | ID=MS.gene34982.t1.exon22;Parent=MS.gene34982.t1 |
| chr4.4 | CDS | 18087880 | 18088175 | 18087880 | ID=cds.MS.gene34982.t1;Parent=MS.gene34982.t1 |
| chr4.4 | exon | 18086956 | 18087261 | 18086956 | ID=MS.gene34982.t1.exon23;Parent=MS.gene34982.t1 |
| chr4.4 | CDS | 18086956 | 18087261 | 18086956 | ID=cds.MS.gene34982.t1;Parent=MS.gene34982.t1 |
| Gene Sequence |
| Protein sequence |
