Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35002.t1 | RHN42290.1 | 99.3 | 149 | 1 | 0 | 4 | 152 | 152 | 300 | 9.00E-74 | 286.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35002.t1 | F4IP06 | 75.2 | 153 | 37 | 1 | 1 | 152 | 148 | 300 | 4.5e-58 | 225.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35002.t1 | A0A396GMM6 | 99.3 | 149 | 1 | 0 | 4 | 152 | 152 | 300 | 6.5e-74 | 286.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052516 | MS.gene35002 | 0.809118 | 2.22E-50 | -1.69E-46 |
| MS.gene052611 | MS.gene35002 | 0.820195 | 7.80E-53 | -1.69E-46 |
| MS.gene052863 | MS.gene35002 | 0.804812 | 1.80E-49 | -1.69E-46 |
| MS.gene052896 | MS.gene35002 | 0.813947 | 1.98E-51 | -1.69E-46 |
| MS.gene053008 | MS.gene35002 | 0.803023 | 4.25E-49 | -1.69E-46 |
| MS.gene055512 | MS.gene35002 | 0.818394 | 2.01E-52 | -1.69E-46 |
| MS.gene056553 | MS.gene35002 | 0.819668 | 1.03E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35002.t1 | AT2G36740 | 75.163 | 153 | 37 | 1 | 1 | 152 | 148 | 300 | 4.16e-80 | 241 |
| MS.gene35002.t1 | AT2G36740 | 75.163 | 153 | 37 | 1 | 1 | 152 | 148 | 300 | 7.13e-80 | 239 |
Find 28 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTATGAACTTGAGGAATT+TGG | 0.176156 | 4.4:+18371993 | MS.gene35002:CDS |
| TCGCCTTTCTTCCTTATTAC+TGG | 0.196750 | 4.4:-18371810 | None:intergenic |
| GTGCATAAAACTGTCTTTAA+TGG | 0.216607 | 4.4:+18372060 | MS.gene35002:CDS |
| CAACCTGTTTGCGTTATTAC+TGG | 0.293930 | 4.4:+18373565 | MS.gene35002:CDS |
| GCGAACAATGACGGAAGTTC+TGG | 0.369171 | 4.4:-18371119 | None:intergenic |
| ATAACGCAAACAGGTTGTTC+TGG | 0.392827 | 4.4:-18373559 | None:intergenic |
| CGTATTTGGAGTTTACTAAA+GGG | 0.400482 | 4.4:+18372202 | MS.gene35002:CDS |
| GCGTATGGCAGCCCAGTCTT+TGG | 0.402777 | 4.4:-18373775 | None:intergenic |
| GATATTGGAGATAACCTTGT+AGG | 0.403997 | 4.4:-18371182 | None:intergenic |
| ATACACTACATATCACAAAA+TGG | 0.416807 | 4.4:+18372090 | MS.gene35002:CDS |
| TCGTATTTGGAGTTTACTAA+AGG | 0.472369 | 4.4:+18372201 | MS.gene35002:CDS |
| ATGCCAAGGAGGTAATGATT+AGG | 0.476554 | 4.4:+18371089 | None:intergenic |
| GAATGGCTTCTCTTTCAGCT+TGG | 0.491571 | 4.4:-18371141 | None:intergenic |
| AAACCAGTAATAACGCAAAC+AGG | 0.498211 | 4.4:-18373568 | None:intergenic |
| AAGAAAGGCTCTTACTTGGC+AGG | 0.501328 | 4.4:-18373592 | None:intergenic |
| TTCAGCTTGGCGAACAATGA+CGG | 0.524822 | 4.4:-18371128 | None:intergenic |
| AGGTACCGTGATCCAAAGAC+TGG | 0.525622 | 4.4:+18373763 | MS.gene35002:intron |
| CTGCAGAAATTATGAACTTG+AGG | 0.529753 | 4.4:+18371986 | MS.gene35002:intron |
| TGCTTTGAGAGCTTCGCGAA+TGG | 0.533499 | 4.4:-18371158 | None:intergenic |
| CAGCCAGTAATAAGGAAGAA+AGG | 0.573774 | 4.4:+18371807 | MS.gene35002:intron |
| AGCTCTCAAAGCAACCTACA+AGG | 0.574053 | 4.4:+18371168 | MS.gene35002:CDS |
| GTATTTGGAGTTTACTAAAG+GGG | 0.598121 | 4.4:+18372203 | MS.gene35002:CDS |
| CGCACATTCTTGAGACGTTG+TGG | 0.601571 | 4.4:-18372247 | None:intergenic |
| GGAGAAGAAAATGTCACAAG+AGG | 0.609231 | 4.4:+18371833 | MS.gene35002:CDS |
| TGTGATATGTAGTGTATCTG+TGG | 0.609479 | 4.4:-18372084 | None:intergenic |
| GCAGCCCAGTCTTTGGATCA+CGG | 0.611548 | 4.4:-18373768 | None:intergenic |
| AGTAATAAGGAAGAAAGGCG+AGG | 0.677909 | 4.4:+18371812 | MS.gene35002:CDS |
| GGTACCGTGATCCAAAGACT+GGG | 0.697285 | 4.4:+18373764 | MS.gene35002:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTTTTCTTTTTTTTTT+TGG | + | chr4.4:18371782-18371801 | MS.gene35002:intron | 10.0% |
| !! | TTCAATACAAAAAAAATTGA+CGG | + | chr4.4:18373206-18373225 | MS.gene35002:intron | 15.0% |
| !!! | CTAACTAATTTTTGTAAATT+CGG | - | chr4.4:18372615-18372634 | None:intergenic | 15.0% |
| !!! | GTTTAATTAGTTTAAAGTTA+GGG | + | chr4.4:18373228-18373247 | MS.gene35002:intron | 15.0% |
| !! | AAATATAGTGCTAGAATAAA+AGG | - | chr4.4:18372275-18372294 | None:intergenic | 20.0% |
| !! | AACTTAAATGCTTATCATAT+AGG | - | chr4.4:18371700-18371719 | None:intergenic | 20.0% |
| !! | AATATAGTGCTAGAATAAAA+GGG | - | chr4.4:18372274-18372293 | None:intergenic | 20.0% |
| !! | CGAATTTACAAAAATTAGTT+AGG | + | chr4.4:18372613-18372632 | MS.gene35002:intron | 20.0% |
| !! | CTTATTTCAATAATCTTTCT+GGG | - | chr4.4:18371495-18371514 | None:intergenic | 20.0% |
| !! | GAATTCGTTAGATAAAAAAT+TGG | + | chr4.4:18373177-18373196 | MS.gene35002:intron | 20.0% |
| !! | TACAAAAATTAGTTAGGTTT+AGG | + | chr4.4:18372619-18372638 | MS.gene35002:intron | 20.0% |
| !! | TTAAAGTAGAAAAATGTTTC+AGG | + | chr4.4:18372981-18373000 | MS.gene35002:intron | 20.0% |
| !! | TTATTTCAATAATCTTTCTG+GGG | - | chr4.4:18371494-18371513 | None:intergenic | 20.0% |
| !!! | ACTAAGTGTTTTAGATAATT+AGG | + | chr4.4:18372899-18372918 | MS.gene35002:intron | 20.0% |
| !!! | ATTTTTGTAAATTCGGTATT+TGG | - | chr4.4:18372608-18372627 | None:intergenic | 20.0% |
| !!! | CTAAGTGTTTTAGATAATTA+GGG | + | chr4.4:18372900-18372919 | MS.gene35002:intron | 20.0% |
| !!! | GGTTTAATTAGTTTAAAGTT+AGG | + | chr4.4:18373227-18373246 | MS.gene35002:intron | 20.0% |
| !!! | GTAAAACTTTTTCTACTTAA+AGG | - | chr4.4:18373019-18373038 | None:intergenic | 20.0% |
| !!! | TTTATTCTAGCACTATATTT+TGG | + | chr4.4:18372275-18372294 | MS.gene35002:intron | 20.0% |
| !!! | TTTTATCTATTGTTGTGATA+AGG | - | chr4.4:18371423-18371442 | None:intergenic | 20.0% |
| ! | AAATTAGTTAGGTTTAGGAA+AGG | + | chr4.4:18372624-18372643 | MS.gene35002:intron | 25.0% |
| ! | AAGCATAATTGAAACATCAA+AGG | - | chr4.4:18371960-18371979 | None:intergenic | 25.0% |
| ! | AATAAGCTTATAACAGCTTA+TGG | + | chr4.4:18371509-18371528 | MS.gene35002:intron | 25.0% |
| ! | AATGACGAAACAATTTCTTT+GGG | - | chr4.4:18372374-18372393 | None:intergenic | 25.0% |
| ! | AATTATGAACTTGAGGAATT+TGG | + | chr4.4:18371993-18372012 | MS.gene35002:CDS | 25.0% |
| ! | ACAGATTGCTATATGTAAAA+TGG | - | chr4.4:18372164-18372183 | None:intergenic | 25.0% |
| ! | ATACACTACATATCACAAAA+TGG | + | chr4.4:18372090-18372109 | MS.gene35002:CDS | 25.0% |
| ! | ATGTAATATATTCCGTTTCT+TGG | + | chr4.4:18372317-18372336 | MS.gene35002:intron | 25.0% |
| ! | ATGTATAGTAAACAATGAGT+AGG | + | chr4.4:18372662-18372681 | MS.gene35002:intron | 25.0% |
| ! | CTTAACAGAATCTATGTAAA+TGG | + | chr4.4:18371601-18371620 | MS.gene35002:intron | 25.0% |
| ! | GCTTATTTCAATAATCTTTC+TGG | - | chr4.4:18371496-18371515 | None:intergenic | 25.0% |
| ! | TAAGATTTGCAACTATGTAT+GGG | + | chr4.4:18373049-18373068 | MS.gene35002:intron | 25.0% |
| ! | TACATAGATTCTGTTAAGAT+TGG | - | chr4.4:18371599-18371618 | None:intergenic | 25.0% |
| ! | TGAATCACAGAAAAAGATAT+TGG | - | chr4.4:18371200-18371219 | None:intergenic | 25.0% |
| !! | ATCTTTTTCTGTGATTCATT+AGG | + | chr4.4:18371202-18371221 | MS.gene35002:intron | 25.0% |
| !! | TATCTAAAACACTTAGTTGT+GGG | - | chr4.4:18372896-18372915 | None:intergenic | 25.0% |
| !! | TCTTTTTCTGTGATTCATTA+GGG | + | chr4.4:18371203-18371222 | MS.gene35002:intron | 25.0% |
| !! | TGATGTTTCAATTATGCTTT+TGG | + | chr4.4:18371961-18371980 | MS.gene35002:intron | 25.0% |
| !! | TTATCTAAAACACTTAGTTG+TGG | - | chr4.4:18372897-18372916 | None:intergenic | 25.0% |
| !!! | AGCAATCTGTTTATTTTTTC+AGG | + | chr4.4:18372174-18372193 | MS.gene35002:intron | 25.0% |
| AAAAAAAGAAGTAGTTCAGC+CGG | + | chr4.4:18373677-18373696 | MS.gene35002:intron | 30.0% | |
| ACATAGTTGCAAATCTTACT+AGG | - | chr4.4:18373047-18373066 | None:intergenic | 30.0% | |
| ACTACATATCACAAAATGGT+TGG | + | chr4.4:18372094-18372113 | MS.gene35002:intron | 30.0% | |
| ATAGACAAAGGGAAATATTC+CGG | - | chr4.4:18373699-18373718 | None:intergenic | 30.0% | |
| ATAGTAAACAATGAGTAGGA+AGG | + | chr4.4:18372666-18372685 | MS.gene35002:intron | 30.0% | |
| CAAAGAAATTGTTTCGTCAT+TGG | + | chr4.4:18372373-18372392 | MS.gene35002:intron | 30.0% | |
| CAATGACGAAACAATTTCTT+TGG | - | chr4.4:18372375-18372394 | None:intergenic | 30.0% | |
| CTATCTTGAAAAACAGCTTA+TGG | - | chr4.4:18371364-18371383 | None:intergenic | 30.0% | |
| CTGTACCTCAAATATTGTTA+AGG | + | chr4.4:18373724-18373743 | MS.gene35002:intron | 30.0% | |
| GAAAACTAAAACAAACAAGC+AGG | - | chr4.4:18371930-18371949 | None:intergenic | 30.0% | |
| GAACTCCTTAACAATATTTG+AGG | - | chr4.4:18373732-18373751 | None:intergenic | 30.0% | |
| GAACTTTATGAACCAAGAAA+CGG | - | chr4.4:18372332-18372351 | None:intergenic | 30.0% | |
| GGTCAATATTAGAATACACT+TGG | + | chr4.4:18371882-18371901 | MS.gene35002:intron | 30.0% | |
| GTAAGATTTGCAACTATGTA+TGG | + | chr4.4:18373048-18373067 | MS.gene35002:intron | 30.0% | |
| GTGCATAAAACTGTCTTTAA+TGG | + | chr4.4:18372060-18372079 | MS.gene35002:CDS | 30.0% | |
| TAATAATCCAACTGAACTAC+TGG | - | chr4.4:18373650-18373669 | None:intergenic | 30.0% | |
| TAGACAATAACTCGAATAAC+TGG | + | chr4.4:18372439-18372458 | MS.gene35002:intron | 30.0% | |
| TCACATCAATACATCAAGAA+AGG | - | chr4.4:18373610-18373629 | None:intergenic | 30.0% | |
| TGACATTATAACAAGTGCTA+AGG | + | chr4.4:18372532-18372551 | MS.gene35002:intron | 30.0% | |
| ! | AACATTTTCAGACCATAATC+AGG | - | chr4.4:18371765-18371784 | None:intergenic | 30.0% |
| ! | CGTATTTGGAGTTTACTAAA+GGG | + | chr4.4:18372202-18372221 | MS.gene35002:CDS | 30.0% |
| ! | GCAGTTGAACATAAATGTTT+TGG | + | chr4.4:18372556-18372575 | MS.gene35002:intron | 30.0% |
| ! | GTATTTGGAGTTTACTAAAG+GGG | + | chr4.4:18372203-18372222 | MS.gene35002:CDS | 30.0% |
| ! | TAACAATATTTGAGGTACAG+TGG | - | chr4.4:18373724-18373743 | None:intergenic | 30.0% |
| ! | TCGTATTTGGAGTTTACTAA+AGG | + | chr4.4:18372201-18372220 | MS.gene35002:CDS | 30.0% |
| ! | TGAGAAGAATTTAAAGTACC+CGG | + | chr4.4:18373401-18373420 | MS.gene35002:intron | 30.0% |
| !! | ATGTTGGTAACTCTTACAAA+TGG | + | chr4.4:18373334-18373353 | MS.gene35002:intron | 30.0% |
| !! | TGCATTTAGTTTGGTTGTAT+TGG | + | chr4.4:18372132-18372151 | MS.gene35002:intron | 30.0% |
| !! | TGTTGGTAACTCTTACAAAT+GGG | + | chr4.4:18373335-18373354 | MS.gene35002:intron | 30.0% |
| !!! | ATAAATGTTTTGGAGACCAA+GGG | + | chr4.4:18372566-18372585 | MS.gene35002:intron | 30.0% |
| !!! | TTTTTCAGGTTGTTCGTATT+TGG | + | chr4.4:18372188-18372207 | MS.gene35002:intron | 30.0% |
| AAACCAGTAATAACGCAAAC+AGG | - | chr4.4:18373571-18373590 | None:intergenic | 35.0% | |
| AAGTTAGGGTAGCTACTATA+TGG | + | chr4.4:18373242-18373261 | MS.gene35002:intron | 35.0% | |
| AATAACTGGACACATTCCAA+AGG | + | chr4.4:18372453-18372472 | MS.gene35002:intron | 35.0% | |
| ACAACCAAACTAAATGCACA+TGG | - | chr4.4:18372130-18372149 | None:intergenic | 35.0% | |
| AGATAGCTTATGCTTCTGTT+TGG | + | chr4.4:18371378-18371397 | MS.gene35002:intron | 35.0% | |
| ATAATATGCGAGGTTGAAGA+TGG | + | chr4.4:18373310-18373329 | MS.gene35002:intron | 35.0% | |
| ATGTATGGGTCAGAAATGTT+GGG | + | chr4.4:18373063-18373082 | MS.gene35002:intron | 35.0% | |
| CATTCCATGTGCATTTAGTT+TGG | + | chr4.4:18372123-18372142 | MS.gene35002:intron | 35.0% | |
| CTGCAGAAATTATGAACTTG+AGG | + | chr4.4:18371986-18372005 | MS.gene35002:intron | 35.0% | |
| CTTATAACAGCTTATGGACA+TGG | + | chr4.4:18371515-18371534 | MS.gene35002:intron | 35.0% | |
| GATATTGGAGATAACCTTGT+AGG | - | chr4.4:18371185-18371204 | None:intergenic | 35.0% | |
| GCAATCATGAGCATAAATGA+TGG | + | chr4.4:18373095-18373114 | MS.gene35002:intron | 35.0% | |
| GGGTGTATCTTACAAAAGAA+AGG | + | chr4.4:18372920-18372939 | MS.gene35002:intron | 35.0% | |
| GTAACTCTTACAAATGGGTA+GGG | + | chr4.4:18373340-18373359 | MS.gene35002:intron | 35.0% | |
| GTTCTTCTAAACAATATCCC+AGG | + | chr4.4:18371543-18371562 | MS.gene35002:intron | 35.0% | |
| TAACTCTTACAAATGGGTAG+GGG | + | chr4.4:18373341-18373360 | MS.gene35002:intron | 35.0% | |
| TACATAGAATTTCCTGATGC+CGG | - | chr4.4:18373423-18373442 | None:intergenic | 35.0% | |
| TATGTATGGGTCAGAAATGT+TGG | + | chr4.4:18373062-18373081 | MS.gene35002:intron | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | - | chr4.4:18372791-18372810 | None:intergenic | 35.0% | |
| TGAGCATAAATGATGGTTGT+AGG | + | chr4.4:18373102-18373121 | MS.gene35002:intron | 35.0% | |
| TGTATTTGTGCTCATCTAGT+GGG | + | chr4.4:18371284-18371303 | MS.gene35002:intron | 35.0% | |
| TGTGATATGTAGTGTATCTG+TGG | - | chr4.4:18372087-18372106 | None:intergenic | 35.0% | |
| TTAGTTAGGTTTAGGAAAGG+AGG | + | chr4.4:18372627-18372646 | MS.gene35002:intron | 35.0% | |
| TTCAACCTCGCATATTATGA+AGG | - | chr4.4:18373308-18373327 | None:intergenic | 35.0% | |
| TTCCAAACAACACCTGATTA+TGG | + | chr4.4:18371750-18371769 | MS.gene35002:intron | 35.0% | |
| TTGATTACCAGTAGTTCAGT+TGG | + | chr4.4:18373640-18373659 | MS.gene35002:intron | 35.0% | |
| ! | AAAGCTTCTTTTGTAGCGTA+TGG | - | chr4.4:18373793-18373812 | None:intergenic | 35.0% |
| ! | AGCATTTAAGTTAGAAGCAC+TGG | + | chr4.4:18371708-18371727 | MS.gene35002:intron | 35.0% |
| ! | TTCAGATGGTATCATTTTGC+TGG | + | chr4.4:18372499-18372518 | MS.gene35002:intron | 35.0% |
| !!! | CATAAATGTTTTGGAGACCA+AGG | + | chr4.4:18372565-18372584 | MS.gene35002:intron | 35.0% |
| !!! | TTACCCTGTTTTTACACAAG+AGG | + | chr4.4:18372790-18372809 | MS.gene35002:intron | 35.0% |
| AACTCTTACAAATGGGTAGG+GGG | + | chr4.4:18373342-18373361 | MS.gene35002:intron | 40.0% | |
| AAGGAGTTCTCTCTTGATAC+AGG | + | chr4.4:18373743-18373762 | MS.gene35002:intron | 40.0% | |
| ACAACTAAGTAAGGGCAATC+CGG | + | chr4.4:18372699-18372718 | MS.gene35002:intron | 40.0% | |
| ACAACTCAAGAGAAATCCCT+TGG | - | chr4.4:18372585-18372604 | None:intergenic | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | - | chr4.4:18372797-18372816 | None:intergenic | 40.0% | |
| ACATAGAATTTCCTGATGCC+GGG | - | chr4.4:18373422-18373441 | None:intergenic | 40.0% | |
| ACATGCCTTCATAATATGCG+AGG | + | chr4.4:18373300-18373319 | MS.gene35002:intron | 40.0% | |
| AGTAATAAGGAAGAAAGGCG+AGG | + | chr4.4:18371812-18371831 | MS.gene35002:CDS | 40.0% | |
| ATAACGCAAACAGGTTGTTC+TGG | - | chr4.4:18373562-18373581 | None:intergenic | 40.0% | |
| ATCTACTAGCATAAGCACCT+GGG | - | chr4.4:18371563-18371582 | None:intergenic | 40.0% | |
| ATGATGGTTGTAGGAATGAG+TGG | + | chr4.4:18373111-18373130 | MS.gene35002:intron | 40.0% | |
| ATGTCCCACAATATCCAAAC+AGG | + | chr4.4:18372953-18372972 | MS.gene35002:intron | 40.0% | |
| CAACCTGTTTGCGTTATTAC+TGG | + | chr4.4:18373565-18373584 | MS.gene35002:CDS | 40.0% | |
| CAGCCAGTAATAAGGAAGAA+AGG | + | chr4.4:18371807-18371826 | MS.gene35002:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | - | chr4.4:18372796-18372815 | None:intergenic | 40.0% | |
| CATCAAGAAAGGCTCTTACT+TGG | - | chr4.4:18373599-18373618 | None:intergenic | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr4.4:18372765-18372784 | None:intergenic | 40.0% | |
| CTACTTTAACCTGTCCTGTT+TGG | - | chr4.4:18372970-18372989 | None:intergenic | 40.0% | |
| CTGTCCTGTTTGGATATTGT+GGG | - | chr4.4:18372960-18372979 | None:intergenic | 40.0% | |
| GAGTACCCACAACTAAGTAA+GGG | + | chr4.4:18372691-18372710 | MS.gene35002:intron | 40.0% | |
| GATTGCCCTTACTTAGTTGT+GGG | - | chr4.4:18372699-18372718 | None:intergenic | 40.0% | |
| GCTCTCACAAATAATCTCAC+AGG | - | chr4.4:18371317-18371336 | None:intergenic | 40.0% | |
| GGAGAAGAAAATGTCACAAG+AGG | + | chr4.4:18371833-18371852 | MS.gene35002:CDS | 40.0% | |
| GGTAACTCTTACAAATGGGT+AGG | + | chr4.4:18373339-18373358 | MS.gene35002:intron | 40.0% | |
| GTACAGTGGCTATAGACAAA+GGG | - | chr4.4:18373710-18373729 | None:intergenic | 40.0% | |
| GTGTATTTGTGCTCATCTAG+TGG | + | chr4.4:18371283-18371302 | MS.gene35002:intron | 40.0% | |
| GTTGTTGTCATGTGACTGTA+AGG | - | chr4.4:18372841-18372860 | None:intergenic | 40.0% | |
| TATCTACTAGCATAAGCACC+TGG | - | chr4.4:18371564-18371583 | None:intergenic | 40.0% | |
| TCGCCTTTCTTCCTTATTAC+TGG | - | chr4.4:18371813-18371832 | None:intergenic | 40.0% | |
| TGTAGGAATGAGTGGAGTAT+GGG | + | chr4.4:18373119-18373138 | MS.gene35002:intron | 40.0% | |
| TTAGGTTTAGGAAAGGAGGA+TGG | + | chr4.4:18372631-18372650 | MS.gene35002:intron | 40.0% | |
| TTGTAGGAATGAGTGGAGTA+TGG | + | chr4.4:18373118-18373137 | MS.gene35002:intron | 40.0% | |
| ! | AATTTAAAGTACCCGGCATC+AGG | + | chr4.4:18373408-18373427 | MS.gene35002:intron | 40.0% |
| ! | AGAGTACCCACAACTAAGTA+AGG | + | chr4.4:18372690-18372709 | MS.gene35002:intron | 40.0% |
| ! | CATATTATGAAGGCATGTGG+TGG | - | chr4.4:18373298-18373317 | None:intergenic | 40.0% |
| ! | TCGCATATTATGAAGGCATG+TGG | - | chr4.4:18373301-18373320 | None:intergenic | 40.0% |
| !! | CTTTTAGAAGCTGCTCAAAC+AGG | + | chr4.4:18371861-18371880 | MS.gene35002:CDS | 40.0% |
| !! | GACCATAATCAGGTGTTGTT+TGG | - | chr4.4:18371755-18371774 | None:intergenic | 40.0% |
| !!! | TTTTGGCTCAGCCAGTAATA+AGG | + | chr4.4:18371799-18371818 | MS.gene35002:intron | 40.0% |
| AAGAAAGGCTCTTACTTGGC+AGG | - | chr4.4:18373595-18373614 | None:intergenic | 45.0% | |
| ACATTCCAAAGGAAGGACCT+TGG | + | chr4.4:18372464-18372483 | MS.gene35002:intron | 45.0% | |
| ACTGGACACATTCCAAAGGA+AGG | + | chr4.4:18372457-18372476 | MS.gene35002:intron | 45.0% | |
| AGCTCTCAAAGCAACCTACA+AGG | + | chr4.4:18371168-18371187 | MS.gene35002:CDS | 45.0% | |
| CCACAATATCCAAACAGGAC+AGG | + | chr4.4:18372958-18372977 | MS.gene35002:intron | 45.0% | |
| CCTGTCCTGTTTGGATATTG+TGG | - | chr4.4:18372961-18372980 | None:intergenic | 45.0% | |
| CTGAAACAAAGCCTCTACCA+AGG | - | chr4.4:18372484-18372503 | None:intergenic | 45.0% | |
| GAATGGCTTCTCTTTCAGCT+TGG | - | chr4.4:18371144-18371163 | None:intergenic | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr4.4:18372766-18372785 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr4.4:18372769-18372788 | None:intergenic | 45.0% | |
| GGATTGCCCTTACTTAGTTG+TGG | - | chr4.4:18372700-18372719 | None:intergenic | 45.0% | |
| GGTACAGTGGCTATAGACAA+AGG | - | chr4.4:18373711-18373730 | None:intergenic | 45.0% | |
| GTCATGTGACTGTAAGGTCA+CGG | - | chr4.4:18372835-18372854 | None:intergenic | 45.0% | |
| TCATGTGACTGTAAGGTCAC+GGG | - | chr4.4:18372834-18372853 | None:intergenic | 45.0% | |
| TTCAGCTTGGCGAACAATGA+CGG | - | chr4.4:18371131-18371150 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr4.4:18373482-18373501 | None:intergenic | 45.0% |
| ! | ACACTTAGTTGTGGGTACTG+AGG | - | chr4.4:18372888-18372907 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr4.4:18373483-18373502 | None:intergenic | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr4.4:18372801-18372820 | MS.gene35002:intron | 45.0% |
| !! | ACTTAGTTGTGGGTACTGAG+GGG | - | chr4.4:18372886-18372905 | None:intergenic | 45.0% |
| !! | CACTTAGTTGTGGGTACTGA+GGG | - | chr4.4:18372887-18372906 | None:intergenic | 45.0% |
| !! | GGTAGAGGCTTTGTTTCAGA+TGG | + | chr4.4:18372485-18372504 | MS.gene35002:intron | 45.0% |
| ACTGAAGCTTCCGCATATGC+AGG | + | chr4.4:18372725-18372744 | MS.gene35002:intron | 50.0% | |
| CAAAGGAAGGACCTTGGTAG+AGG | + | chr4.4:18372470-18372489 | MS.gene35002:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr4.4:18372857-18372876 | MS.gene35002:intron | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr4.4:18373481-18373500 | MS.gene35002:intron | 50.0% | |
| CGAGGTTGAAGATGGCATGT+TGG | + | chr4.4:18373318-18373337 | MS.gene35002:intron | 50.0% | |
| CGCACATTCTTGAGACGTTG+TGG | - | chr4.4:18372250-18372269 | None:intergenic | 50.0% | |
| CTCTACCAAGGTCCTTCCTT+TGG | - | chr4.4:18372472-18372491 | None:intergenic | 50.0% | |
| CTGAAGCTTCCGCATATGCA+GGG | + | chr4.4:18372726-18372745 | MS.gene35002:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr4.4:18373478-18373497 | None:intergenic | 50.0% | |
| GGTACCGTGATCCAAAGACT+GGG | + | chr4.4:18373764-18373783 | MS.gene35002:intron | 50.0% | |
| GTGGGCATACTGAGATGGAT+AGG | + | chr4.4:18373146-18373165 | MS.gene35002:intron | 50.0% | |
| TATAGCCGACCCCACTTAGT+GGG | + | chr4.4:18373470-18373489 | MS.gene35002:intron | 50.0% | |
| TTATAGCCGACCCCACTTAG+TGG | + | chr4.4:18373469-18373488 | MS.gene35002:intron | 50.0% | |
| ! | AGGTACCGTGATCCAAAGAC+TGG | + | chr4.4:18373763-18373782 | MS.gene35002:intron | 50.0% |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr4.4:18373484-18373503 | None:intergenic | 50.0% |
| ! | GCGAACAATGACGGAAGTTC+TGG | - | chr4.4:18371122-18371141 | None:intergenic | 50.0% |
| !! | TGCTTTGAGAGCTTCGCGAA+TGG | - | chr4.4:18371161-18371180 | None:intergenic | 50.0% |
| !!! | GGAGCGAGTTTTAGCTAGAG+AGG | + | chr4.4:18372014-18372033 | MS.gene35002:CDS | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr4.4:18372822-18372841 | None:intergenic | 55.0% | |
| ATGCGGAAGCTTCAGTGCAC+CGG | - | chr4.4:18372721-18372740 | None:intergenic | 55.0% | |
| CATATGCAGGGTCCAGGAAG+GGG | + | chr4.4:18372738-18372757 | MS.gene35002:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr4.4:18373476-18373495 | MS.gene35002:intron | 55.0% | |
| CTTCCTGGACCCTGCATATG+CGG | - | chr4.4:18372738-18372757 | None:intergenic | 55.0% | |
| GACGAGTGGGCATACTGAGA+TGG | + | chr4.4:18373141-18373160 | MS.gene35002:intron | 55.0% | |
| GAGTGGAGTATGGGACGAGT+GGG | + | chr4.4:18373128-18373147 | MS.gene35002:intron | 55.0% | |
| GCAGCCCAGTCTTTGGATCA+CGG | - | chr4.4:18373771-18373790 | None:intergenic | 55.0% | |
| GCATATGCAGGGTCCAGGAA+GGG | + | chr4.4:18372737-18372756 | MS.gene35002:intron | 55.0% | |
| TGAGTGGAGTATGGGACGAG+TGG | + | chr4.4:18373127-18373146 | MS.gene35002:intron | 55.0% | |
| !! | TGGGTACTGAGGGGTAACCT+TGG | - | chr4.4:18372877-18372896 | None:intergenic | 55.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | - | chr4.4:18372868-18372887 | None:intergenic | 60.0% | |
| CAGGAAGGGGTCCCACCATT+TGG | + | chr4.4:18372751-18372770 | MS.gene35002:intron | 60.0% | |
| CGCATATGCAGGGTCCAGGA+AGG | + | chr4.4:18372736-18372755 | MS.gene35002:intron | 60.0% | |
| CTTCCGCATATGCAGGGTCC+AGG | + | chr4.4:18372732-18372751 | MS.gene35002:intron | 60.0% | |
| GCGTATGGCAGCCCAGTCTT+TGG | - | chr4.4:18373778-18373797 | None:intergenic | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+TGG | - | chr4.4:18372753-18372772 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 18371103 | 18373830 | 18371103 | ID=MS.gene35002 |
| chr4.4 | mRNA | 18371103 | 18373830 | 18371103 | ID=MS.gene35002.t1;Parent=MS.gene35002 |
| chr4.4 | exon | 18371103 | 18371189 | 18371103 | ID=MS.gene35002.t1.exon1;Parent=MS.gene35002.t1 |
| chr4.4 | CDS | 18371103 | 18371189 | 18371103 | ID=cds.MS.gene35002.t1;Parent=MS.gene35002.t1 |
| chr4.4 | exon | 18371810 | 18371882 | 18371810 | ID=MS.gene35002.t1.exon2;Parent=MS.gene35002.t1 |
| chr4.4 | CDS | 18371810 | 18371882 | 18371810 | ID=cds.MS.gene35002.t1;Parent=MS.gene35002.t1 |
| chr4.4 | exon | 18371992 | 18372111 | 18371992 | ID=MS.gene35002.t1.exon3;Parent=MS.gene35002.t1 |
| chr4.4 | CDS | 18371992 | 18372111 | 18371992 | ID=cds.MS.gene35002.t1;Parent=MS.gene35002.t1 |
| chr4.4 | exon | 18372196 | 18372264 | 18372196 | ID=MS.gene35002.t1.exon4;Parent=MS.gene35002.t1 |
| chr4.4 | CDS | 18372196 | 18372264 | 18372196 | ID=cds.MS.gene35002.t1;Parent=MS.gene35002.t1 |
| chr4.4 | exon | 18373557 | 18373599 | 18373557 | ID=MS.gene35002.t1.exon5;Parent=MS.gene35002.t1 |
| chr4.4 | CDS | 18373557 | 18373599 | 18373557 | ID=cds.MS.gene35002.t1;Parent=MS.gene35002.t1 |
| chr4.4 | exon | 18373765 | 18373830 | 18373765 | ID=MS.gene35002.t1.exon6;Parent=MS.gene35002.t1 |
| chr4.4 | CDS | 18373765 | 18373830 | 18373765 | ID=cds.MS.gene35002.t1;Parent=MS.gene35002.t1 |
| Gene Sequence |
| Protein sequence |
