Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35006.t1 | RHN42290.1 | 96.6 | 146 | 5 | 0 | 28 | 173 | 206 | 351 | 1.00E-74 | 289.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35006.t1 | F4IP06 | 60.5 | 147 | 58 | 0 | 28 | 174 | 206 | 352 | 1.6e-44 | 180.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35006.t1 | A0A396GMM6 | 96.6 | 146 | 5 | 0 | 28 | 173 | 206 | 351 | 7.2e-75 | 289.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051388 | MS.gene35006 | 0.808108 | 3.64E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene35006 | 0.802313 | 5.95E-49 | -1.69E-46 |
| MS.gene052611 | MS.gene35006 | 0.821983 | 3.02E-53 | -1.69E-46 |
| MS.gene052773 | MS.gene35006 | 0.80807 | 3.71E-50 | -1.69E-46 |
| MS.gene052863 | MS.gene35006 | 0.809069 | 2.27E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene35006 | 0.802118 | 6.53E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene35006 | 0.806386 | 8.43E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene35006 | 0.805429 | 1.34E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTTATATGATTCAGTTTC+TGG | 0.127458 | 4.2:+15660129 | MS.gene35006:CDS |
| TCGCCTTTCTTCCTTATTAC+TGG | 0.196750 | 4.2:-15657224 | None:intergenic |
| TATGATTCAGTTTCTGGATA+TGG | 0.207235 | 4.2:+15660135 | MS.gene35006:CDS |
| GTGCATAAAACTGTCTTTAA+TGG | 0.216607 | 4.2:+15657473 | MS.gene35006:CDS |
| CAACCTGTTTGCGTTATTAC+TGG | 0.293930 | 4.2:+15658981 | MS.gene35006:CDS |
| CTCTAGAAAAGAAACGAATA+TGG | 0.304931 | 4.2:+15660104 | MS.gene35006:CDS |
| AAATTATGAACTTGAGGAAT+TGG | 0.346466 | 4.2:+15657406 | MS.gene35006:CDS |
| ATAACGCAAACAGGTTGTTC+TGG | 0.392827 | 4.2:-15658975 | None:intergenic |
| CGTATTTGGAGTTTACTAAA+GGG | 0.400482 | 4.2:+15657615 | MS.gene35006:CDS |
| GCGTATGGCAGCCCAGTCTT+TGG | 0.402777 | 4.2:-15659192 | None:intergenic |
| ATACACTACATATCACAAAA+TGG | 0.416807 | 4.2:+15657503 | MS.gene35006:CDS |
| TCGTATTTGGAGTTTACTAA+AGG | 0.472369 | 4.2:+15657614 | MS.gene35006:CDS |
| AAACCAGTAATAACGCAAAC+AGG | 0.498211 | 4.2:-15658984 | None:intergenic |
| AAGAAAGGCTCTTACTTGGC+AGG | 0.501328 | 4.2:-15659008 | None:intergenic |
| CACATGATCGGTCCTTGGCT+CGG | 0.509334 | 4.2:+15660208 | MS.gene35006:CDS |
| ACATCCACATGATCGGTCCT+TGG | 0.525200 | 4.2:+15660203 | MS.gene35006:CDS |
| AGGTACCGTGATCCAAAGAC+TGG | 0.525622 | 4.2:+15659180 | MS.gene35006:intron |
| GAATCTTCATCCTCAAAAGT+AGG | 0.528439 | 4.2:-15660242 | None:intergenic |
| CTGCAGAAATTATGAACTTG+AGG | 0.529753 | 4.2:+15657400 | MS.gene35006:intron |
| TCTAGAAAAGAAACGAATAT+GGG | 0.542033 | 4.2:+15660105 | MS.gene35006:CDS |
| AAAATATACATCCACATGAT+CGG | 0.556585 | 4.2:+15660196 | MS.gene35006:CDS |
| CAGCCAGTAATAAGGAAGAA+AGG | 0.573774 | 4.2:+15657221 | None:intergenic |
| GTATTTGGAGTTTACTAAAG+GGG | 0.598121 | 4.2:+15657616 | MS.gene35006:CDS |
| CGCACATTCTTGAGACGTTG+TGG | 0.601571 | 4.2:-15657660 | None:intergenic |
| CGAGCCAAGGACCGATCATG+TGG | 0.604117 | 4.2:-15660207 | None:intergenic |
| GGAGAAGAAAATGTCACAAG+AGG | 0.609231 | 4.2:+15657247 | MS.gene35006:CDS |
| TGTGATATGTAGTGTATCTG+TGG | 0.609479 | 4.2:-15657497 | None:intergenic |
| GCAGCCCAGTCTTTGGATCA+CGG | 0.611548 | 4.2:-15659185 | None:intergenic |
| AAGATTCTGACTAACTGCCT+TGG | 0.625749 | 4.2:+15660258 | MS.gene35006:CDS |
| GAATTCTACGAACCGAGCCA+AGG | 0.630124 | 4.2:-15660220 | None:intergenic |
| AGAAAAGAAACGAATATGGG+AGG | 0.647868 | 4.2:+15660108 | MS.gene35006:CDS |
| AGTAATAAGGAAGAAAGGCG+AGG | 0.677909 | 4.2:+15657226 | MS.gene35006:CDS |
| GGTACCGTGATCCAAAGACT+GGG | 0.697285 | 4.2:+15659181 | MS.gene35006:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTGTTATAAAAGAATATT+AGG | - | chr4.2:15659304-15659323 | None:intergenic | 15.0% |
| !! | TTATAAGAACAATTATAACT+AGG | - | chr4.2:15659819-15659838 | None:intergenic | 15.0% |
| !! | TTCAATACAAAAAAAATTGA+CGG | + | chr4.2:15658621-15658640 | MS.gene35006:intron | 15.0% |
| !!! | ATCATAAAAAGTTATCTTTT+TGG | - | chr4.2:15659372-15659391 | None:intergenic | 15.0% |
| !!! | CTAACTAATTTTTGTAAATT+CGG | - | chr4.2:15658028-15658047 | None:intergenic | 15.0% |
| !!! | GTTTAATTAGTTTAAAGTTA+GGG | + | chr4.2:15658643-15658662 | MS.gene35006:intron | 15.0% |
| !! | AAAAAAAAAAGAAGTAGTTC+AGG | + | chr4.2:15659090-15659109 | MS.gene35006:intron | 20.0% |
| !! | AAATATAGTGCTAGAATAAA+AGG | - | chr4.2:15657688-15657707 | None:intergenic | 20.0% |
| !! | AATATAGTGCTAGAATAAAA+GGG | - | chr4.2:15657687-15657706 | None:intergenic | 20.0% |
| !! | CGAATTTACAAAAATTAGTT+AGG | + | chr4.2:15658026-15658045 | MS.gene35006:intron | 20.0% |
| !! | GAATTCGTTAGATAAAAAAT+TGG | + | chr4.2:15658592-15658611 | MS.gene35006:intron | 20.0% |
| !! | TACAAAAATTAGTTAGGTTT+AGG | + | chr4.2:15658032-15658051 | MS.gene35006:intron | 20.0% |
| !! | TTAAAGTAGAAAAATGTTTC+AGG | + | chr4.2:15658395-15658414 | MS.gene35006:intron | 20.0% |
| !! | TTAGTAATTCAATAACATCA+TGG | - | chr4.2:15659491-15659510 | None:intergenic | 20.0% |
| !!! | AAATATAAAAGCATTCATGT+GGG | + | chr4.2:15659937-15659956 | MS.gene35006:intron | 20.0% |
| !!! | ATTTTTGTAAATTCGGTATT+TGG | - | chr4.2:15658021-15658040 | None:intergenic | 20.0% |
| !!! | CTTGTAATTGATTTTAATTG+GGG | + | chr4.2:15660048-15660067 | MS.gene35006:intron | 20.0% |
| !!! | CTTTTAAAATAATTCGACAA+CGG | + | chr4.2:15659226-15659245 | MS.gene35006:CDS | 20.0% |
| !!! | GCTTGTAATTGATTTTAATT+GGG | + | chr4.2:15660047-15660066 | MS.gene35006:intron | 20.0% |
| !!! | GGTTTAATTAGTTTAAAGTT+AGG | + | chr4.2:15658642-15658661 | MS.gene35006:intron | 20.0% |
| !!! | GTAAAACTTTTTCTACTTAA+AGG | - | chr4.2:15658433-15658452 | None:intergenic | 20.0% |
| !!! | TAAATATAAAAGCATTCATG+TGG | + | chr4.2:15659936-15659955 | MS.gene35006:intron | 20.0% |
| !!! | TAAGTGTTTTACGATAATTA+GGG | + | chr4.2:15658314-15658333 | MS.gene35006:intron | 20.0% |
| !!! | TGCTTGTAATTGATTTTAAT+TGG | + | chr4.2:15660046-15660065 | MS.gene35006:intron | 20.0% |
| !!! | TTTATTCTAGCACTATATTT+TGG | + | chr4.2:15657688-15657707 | MS.gene35006:intron | 20.0% |
| !!! | TTTTTTTTTTCATTCTGCAA+TGG | + | chr4.2:15659415-15659434 | MS.gene35006:intron | 20.0% |
| ! | AAAATATACATCCACATGAT+CGG | + | chr4.2:15660196-15660215 | MS.gene35006:CDS | 25.0% |
| ! | AAATTAGTTAGGTTTAGGAA+AGG | + | chr4.2:15658037-15658056 | MS.gene35006:intron | 25.0% |
| ! | AAATTATGAACTTGAGGAAT+TGG | + | chr4.2:15657406-15657425 | MS.gene35006:CDS | 25.0% |
| ! | AAGCATAATTGAAACATCAA+AGG | - | chr4.2:15657374-15657393 | None:intergenic | 25.0% |
| ! | AATGACGAAACAATTTCTTT+GGG | - | chr4.2:15657787-15657806 | None:intergenic | 25.0% |
| ! | ACAAGTTGCTATATGTAAAA+TGG | - | chr4.2:15657577-15657596 | None:intergenic | 25.0% |
| ! | AGGATTAAACACAATTTCAT+GGG | - | chr4.2:15659799-15659818 | None:intergenic | 25.0% |
| ! | ATACACTACATATCACAAAA+TGG | + | chr4.2:15657503-15657522 | MS.gene35006:CDS | 25.0% |
| ! | ATGTAATATATTCCGTTTCT+TGG | + | chr4.2:15657730-15657749 | MS.gene35006:intron | 25.0% |
| ! | ATGTATAGTAAACAATGAGT+AGG | + | chr4.2:15658075-15658094 | MS.gene35006:intron | 25.0% |
| ! | TAAGATTTGCAACTATGTAT+GGG | + | chr4.2:15658463-15658482 | MS.gene35006:intron | 25.0% |
| ! | TAATTCAATAACATCATGGT+GGG | - | chr4.2:15659487-15659506 | None:intergenic | 25.0% |
| ! | TAGGATTAAACACAATTTCA+TGG | - | chr4.2:15659800-15659819 | None:intergenic | 25.0% |
| ! | TCTAGAAAAGAAACGAATAT+GGG | + | chr4.2:15660105-15660124 | MS.gene35006:CDS | 25.0% |
| !! | CTAAGTGTTTTACGATAATT+AGG | + | chr4.2:15658313-15658332 | MS.gene35006:intron | 25.0% |
| !! | TGATGTTTCAATTATGCTTT+TGG | + | chr4.2:15657375-15657394 | MS.gene35006:intron | 25.0% |
| !!! | AGCAACTTGTTTATTTTTTC+AGG | + | chr4.2:15657587-15657606 | MS.gene35006:intron | 25.0% |
| AAGTTTACTTGCAATCTAGA+AGG | - | chr4.2:15659257-15659276 | None:intergenic | 30.0% | |
| AATTCAATAACATCATGGTG+GGG | - | chr4.2:15659486-15659505 | None:intergenic | 30.0% | |
| ACATAGTTGCAAATCTTACT+AGG | - | chr4.2:15658461-15658480 | None:intergenic | 30.0% | |
| ACTACATATCACAAAATGGT+TGG | + | chr4.2:15657507-15657526 | MS.gene35006:intron | 30.0% | |
| ATAGACAAAGGGAAATATTC+CGG | - | chr4.2:15659116-15659135 | None:intergenic | 30.0% | |
| ATAGTAAACAATGAGTAGGA+AGG | + | chr4.2:15658079-15658098 | MS.gene35006:intron | 30.0% | |
| ATCGTAAAACACTTAGTTGT+GGG | - | chr4.2:15658309-15658328 | None:intergenic | 30.0% | |
| ATTGTTGGATAGCTAATGAT+GGG | + | chr4.2:15659682-15659701 | MS.gene35006:intron | 30.0% | |
| CAAAGAAATTGTTTCGTCAT+TGG | + | chr4.2:15657786-15657805 | MS.gene35006:intron | 30.0% | |
| CAATGACGAAACAATTTCTT+TGG | - | chr4.2:15657788-15657807 | None:intergenic | 30.0% | |
| CTGTACCTCAAATATTGTTA+AGG | + | chr4.2:15659141-15659160 | MS.gene35006:intron | 30.0% | |
| GAAAACTAAAACAAACAAGC+AGG | - | chr4.2:15657344-15657363 | None:intergenic | 30.0% | |
| GAACTCCTTAACAATATTTG+AGG | - | chr4.2:15659149-15659168 | None:intergenic | 30.0% | |
| GAACTTTATGAACCAAGAAA+CGG | - | chr4.2:15657745-15657764 | None:intergenic | 30.0% | |
| GGTCAATATTAGAATACACT+TGG | + | chr4.2:15657296-15657315 | MS.gene35006:intron | 30.0% | |
| GTAAGATTTGCAACTATGTA+TGG | + | chr4.2:15658462-15658481 | MS.gene35006:intron | 30.0% | |
| GTAATTCAATAACATCATGG+TGG | - | chr4.2:15659488-15659507 | None:intergenic | 30.0% | |
| GTGCATAAAACTGTCTTTAA+TGG | + | chr4.2:15657473-15657492 | MS.gene35006:CDS | 30.0% | |
| GTTAATGTGATTCACTTCAT+AGG | + | chr4.2:15659325-15659344 | MS.gene35006:intron | 30.0% | |
| TAATAATCCAACTGAACTAC+TGG | - | chr4.2:15659066-15659085 | None:intergenic | 30.0% | |
| TAGACAATAACTCGAATAAC+TGG | + | chr4.2:15657852-15657871 | MS.gene35006:intron | 30.0% | |
| TATCGTAAAACACTTAGTTG+TGG | - | chr4.2:15658310-15658329 | None:intergenic | 30.0% | |
| TATTGTTGGATAGCTAATGA+TGG | + | chr4.2:15659681-15659700 | MS.gene35006:intron | 30.0% | |
| TCACATCAATACATCAAGAA+AGG | - | chr4.2:15659026-15659045 | None:intergenic | 30.0% | |
| TCTGAAAAGCTAGAGAAATT+GGG | - | chr4.2:15659740-15659759 | None:intergenic | 30.0% | |
| TGACATTATAACAAGTGCTA+AGG | + | chr4.2:15657945-15657964 | MS.gene35006:intron | 30.0% | |
| TGATCTAATGTTCCAATAGA+AGG | + | chr4.2:15659440-15659459 | MS.gene35006:intron | 30.0% | |
| TGGTTAATGATAGTAGGATT+AGG | + | chr4.2:15659963-15659982 | MS.gene35006:intron | 30.0% | |
| ! | CGTATTTGGAGTTTACTAAA+GGG | + | chr4.2:15657615-15657634 | MS.gene35006:CDS | 30.0% |
| ! | CTCTAGAAAAGAAACGAATA+TGG | + | chr4.2:15660104-15660123 | MS.gene35006:CDS | 30.0% |
| ! | GCAGTTGAACATAAATGTTT+TGG | + | chr4.2:15657969-15657988 | MS.gene35006:intron | 30.0% |
| ! | GTATTTGGAGTTTACTAAAG+GGG | + | chr4.2:15657616-15657635 | MS.gene35006:CDS | 30.0% |
| ! | TAACAATATTTGAGGTACAG+TGG | - | chr4.2:15659141-15659160 | None:intergenic | 30.0% |
| ! | TATGATTCAGTTTCTGGATA+TGG | + | chr4.2:15660135-15660154 | MS.gene35006:CDS | 30.0% |
| ! | TCGTATTTGGAGTTTACTAA+AGG | + | chr4.2:15657614-15657633 | MS.gene35006:CDS | 30.0% |
| !! | ATGTTGGTAACTCTTACAAA+TGG | + | chr4.2:15658749-15658768 | MS.gene35006:intron | 30.0% |
| !! | GAGAAGAATTTAAAAGTACC+CGG | + | chr4.2:15658817-15658836 | MS.gene35006:intron | 30.0% |
| !! | TGCATTTAGTTTGGTTGTAT+TGG | + | chr4.2:15657545-15657564 | MS.gene35006:intron | 30.0% |
| !! | TGTTGGTAACTCTTACAAAT+GGG | + | chr4.2:15658750-15658769 | MS.gene35006:intron | 30.0% |
| !!! | ATAAATGTTTTGGAGACCAA+GGG | + | chr4.2:15657979-15657998 | MS.gene35006:intron | 30.0% |
| !!! | TTTTTCAGGTTGTTCGTATT+TGG | + | chr4.2:15657601-15657620 | MS.gene35006:intron | 30.0% |
| AAAAAAGAAGTAGTTCAGGC+CGG | + | chr4.2:15659094-15659113 | MS.gene35006:intron | 35.0% | |
| AAACCAGTAATAACGCAAAC+AGG | - | chr4.2:15658987-15659006 | None:intergenic | 35.0% | |
| AAGTTAGGGTAGCTACTATA+TGG | + | chr4.2:15658657-15658676 | MS.gene35006:intron | 35.0% | |
| AATAACTGGACACATTCCAA+AGG | + | chr4.2:15657866-15657885 | MS.gene35006:intron | 35.0% | |
| ACAACCAAACTAAATGCACA+TGG | - | chr4.2:15657543-15657562 | None:intergenic | 35.0% | |
| AGAAAAGAAACGAATATGGG+AGG | + | chr4.2:15660108-15660127 | MS.gene35006:CDS | 35.0% | |
| ATAATATGCGAGGTTGAAGA+TGG | + | chr4.2:15658725-15658744 | MS.gene35006:intron | 35.0% | |
| ATGTATGGGTCAGAAATGTT+GGG | + | chr4.2:15658477-15658496 | MS.gene35006:intron | 35.0% | |
| ATTCAATAACATCATGGTGG+GGG | - | chr4.2:15659485-15659504 | None:intergenic | 35.0% | |
| CATTCCATGTGCATTTAGTT+TGG | + | chr4.2:15657536-15657555 | MS.gene35006:intron | 35.0% | |
| CTGCAGAAATTATGAACTTG+AGG | + | chr4.2:15657400-15657419 | MS.gene35006:intron | 35.0% | |
| CTTAAGATGACATGGTTCAT+TGG | - | chr4.2:15659564-15659583 | None:intergenic | 35.0% | |
| CTTTCCTTCTTAAGATGACA+TGG | - | chr4.2:15659572-15659591 | None:intergenic | 35.0% | |
| GAATCTTCATCCTCAAAAGT+AGG | - | chr4.2:15660245-15660264 | None:intergenic | 35.0% | |
| GAGCATAAATGATGGTTGTA+GGG | + | chr4.2:15658517-15658536 | MS.gene35006:intron | 35.0% | |
| GCAATCATGAGCATAAATGA+TGG | + | chr4.2:15658509-15658528 | MS.gene35006:intron | 35.0% | |
| GGCTTATATGATTCAGTTTC+TGG | + | chr4.2:15660129-15660148 | MS.gene35006:CDS | 35.0% | |
| GGGTGTATCTTACAAAAGAA+AGG | + | chr4.2:15658334-15658353 | MS.gene35006:intron | 35.0% | |
| GTAACTCTTACAAATGGGTA+GGG | + | chr4.2:15658755-15658774 | MS.gene35006:intron | 35.0% | |
| TAAACACAATTTCATGGGTG+TGG | - | chr4.2:15659794-15659813 | None:intergenic | 35.0% | |
| TAACTCTTACAAATGGGTAG+GGG | + | chr4.2:15658756-15658775 | MS.gene35006:intron | 35.0% | |
| TACATAGAATTTCCTGATGC+CGG | - | chr4.2:15658839-15658858 | None:intergenic | 35.0% | |
| TATGTATGGGTCAGAAATGT+TGG | + | chr4.2:15658476-15658495 | MS.gene35006:intron | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | - | chr4.2:15658204-15658223 | None:intergenic | 35.0% | |
| TGAACCATGTCATCTTAAGA+AGG | + | chr4.2:15659565-15659584 | MS.gene35006:intron | 35.0% | |
| TGAGCATAAATGATGGTTGT+AGG | + | chr4.2:15658516-15658535 | MS.gene35006:intron | 35.0% | |
| TGTGATATGTAGTGTATCTG+TGG | - | chr4.2:15657500-15657519 | None:intergenic | 35.0% | |
| TTAGTTAGGTTTAGGAAAGG+AGG | + | chr4.2:15658040-15658059 | MS.gene35006:intron | 35.0% | |
| TTCAACCTCGCATATTATGA+AGG | - | chr4.2:15658723-15658742 | None:intergenic | 35.0% | |
| TTGATTACCAGTAGTTCAGT+TGG | + | chr4.2:15659056-15659075 | MS.gene35006:intron | 35.0% | |
| ! | AAAGCTTCTTTTGTAGCGTA+TGG | - | chr4.2:15659210-15659229 | None:intergenic | 35.0% |
| ! | CATTGTCGATCTCTTTTTCT+TGG | - | chr4.2:15660169-15660188 | None:intergenic | 35.0% |
| ! | CTCTGAAAAGCTAGAGAAAT+TGG | - | chr4.2:15659741-15659760 | None:intergenic | 35.0% |
| ! | TTCAGATGGTATCATTTTGC+TGG | + | chr4.2:15657912-15657931 | MS.gene35006:intron | 35.0% |
| !! | TCGTAGAATTCCTACTTTTG+AGG | + | chr4.2:15660232-15660251 | MS.gene35006:CDS | 35.0% |
| !! | TTTCTTAGTCTTGAAGTCCA+AGG | + | chr4.2:15659651-15659670 | MS.gene35006:intron | 35.0% |
| !!! | CATAAATGTTTTGGAGACCA+AGG | + | chr4.2:15657978-15657997 | MS.gene35006:intron | 35.0% |
| !!! | TTACCCTGTTTTTACACAAG+AGG | + | chr4.2:15658203-15658222 | MS.gene35006:intron | 35.0% |
| AACTCTTACAAATGGGTAGG+GGG | + | chr4.2:15658757-15658776 | MS.gene35006:intron | 40.0% | |
| AAGCTAGAGAAATTGGGTGA+AGG | - | chr4.2:15659734-15659753 | None:intergenic | 40.0% | |
| AAGGAGTTCTCTCTTGATAC+AGG | + | chr4.2:15659160-15659179 | MS.gene35006:intron | 40.0% | |
| ACAACTAAGTAAGGGCAATC+CGG | + | chr4.2:15658112-15658131 | MS.gene35006:intron | 40.0% | |
| ACAACTCAAGAGAAATCCCT+TGG | - | chr4.2:15657998-15658017 | None:intergenic | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | - | chr4.2:15658210-15658229 | None:intergenic | 40.0% | |
| ACATAGAATTTCCTGATGCC+GGG | - | chr4.2:15658838-15658857 | None:intergenic | 40.0% | |
| ACATGCCTTCATAATATGCG+AGG | + | chr4.2:15658715-15658734 | MS.gene35006:intron | 40.0% | |
| AGTAATAAGGAAGAAAGGCG+AGG | + | chr4.2:15657226-15657245 | MS.gene35006:CDS | 40.0% | |
| ATAACGCAAACAGGTTGTTC+TGG | - | chr4.2:15658978-15658997 | None:intergenic | 40.0% | |
| ATGTCCCACAATATCCAAAC+AGG | + | chr4.2:15658367-15658386 | MS.gene35006:intron | 40.0% | |
| CAACCTGTTTGCGTTATTAC+TGG | + | chr4.2:15658981-15659000 | MS.gene35006:CDS | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | - | chr4.2:15658209-15658228 | None:intergenic | 40.0% | |
| CATCAAGAAAGGCTCTTACT+TGG | - | chr4.2:15659015-15659034 | None:intergenic | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr4.2:15658178-15658197 | None:intergenic | 40.0% | |
| CTACTTTAACCTGTCCTGTT+TGG | - | chr4.2:15658384-15658403 | None:intergenic | 40.0% | |
| CTGTAAGAGCTATTGCATGA+GGG | + | chr4.2:15659906-15659925 | MS.gene35006:intron | 40.0% | |
| CTGTCCTGTTTGGATATTGT+GGG | - | chr4.2:15658374-15658393 | None:intergenic | 40.0% | |
| GAGTACCCACAACTAAGTAA+GGG | + | chr4.2:15658104-15658123 | MS.gene35006:intron | 40.0% | |
| GATTGCCCTTACTTAGTTGT+GGG | - | chr4.2:15658112-15658131 | None:intergenic | 40.0% | |
| GGAGAAGAAAATGTCACAAG+AGG | + | chr4.2:15657247-15657266 | MS.gene35006:CDS | 40.0% | |
| GGTAACTCTTACAAATGGGT+AGG | + | chr4.2:15658754-15658773 | MS.gene35006:intron | 40.0% | |
| GTACAGTGGCTATAGACAAA+GGG | - | chr4.2:15659127-15659146 | None:intergenic | 40.0% | |
| GTTGTTGTCATGTGACTGTA+AGG | - | chr4.2:15658254-15658273 | None:intergenic | 40.0% | |
| TCCAACAATAGTATGTGCCT+TGG | - | chr4.2:15659671-15659690 | None:intergenic | 40.0% | |
| TCCAAGGCACATACTATTGT+TGG | + | chr4.2:15659667-15659686 | MS.gene35006:intron | 40.0% | |
| TCGCCTTTCTTCCTTATTAC+TGG | - | chr4.2:15657227-15657246 | None:intergenic | 40.0% | |
| TGTAAGAGCTATTGCATGAG+GGG | + | chr4.2:15659907-15659926 | MS.gene35006:intron | 40.0% | |
| TTAGGTTTAGGAAAGGAGGA+TGG | + | chr4.2:15658044-15658063 | MS.gene35006:intron | 40.0% | |
| ! | AGAGTACCCACAACTAAGTA+AGG | + | chr4.2:15658103-15658122 | MS.gene35006:intron | 40.0% |
| ! | CATATTATGAAGGCATGTGG+TGG | - | chr4.2:15658713-15658732 | None:intergenic | 40.0% |
| ! | GGGAGTTGGTTAATGATAGT+AGG | + | chr4.2:15659957-15659976 | MS.gene35006:intron | 40.0% |
| ! | GTCGATCTCTTTTTCTTGGT+TGG | - | chr4.2:15660165-15660184 | None:intergenic | 40.0% |
| ! | TCGCATATTATGAAGGCATG+TGG | - | chr4.2:15658716-15658735 | None:intergenic | 40.0% |
| !! | AAAAGCATTCATGTGGGAGT+TGG | + | chr4.2:15659943-15659962 | MS.gene35006:intron | 40.0% |
| !! | ATTTAAAAGTACCCGGCATC+AGG | + | chr4.2:15658824-15658843 | MS.gene35006:intron | 40.0% |
| !! | CTTTTAGAAGCTGCTCAAAC+AGG | + | chr4.2:15657275-15657294 | MS.gene35006:CDS | 40.0% |
| !! | GGGATTATTTTGCAGCATTC+TGG | + | chr4.2:15660068-15660087 | MS.gene35006:intron | 40.0% |
| !!! | TCTAGCTTTTCAGAGAGAGA+TGG | + | chr4.2:15659746-15659765 | MS.gene35006:intron | 40.0% |
| AAGAAAGGCTCTTACTTGGC+AGG | - | chr4.2:15659011-15659030 | None:intergenic | 45.0% | |
| ACATTCCAAAGGAAGGACCT+TGG | + | chr4.2:15657877-15657896 | MS.gene35006:intron | 45.0% | |
| ACTGGACACATTCCAAAGGA+AGG | + | chr4.2:15657870-15657889 | MS.gene35006:intron | 45.0% | |
| CCACAATATCCAAACAGGAC+AGG | + | chr4.2:15658372-15658391 | MS.gene35006:intron | 45.0% | |
| CCTGTCCTGTTTGGATATTG+TGG | - | chr4.2:15658375-15658394 | None:intergenic | 45.0% | |
| CTGAAACAAAGCCTCTACCA+AGG | - | chr4.2:15657897-15657916 | None:intergenic | 45.0% | |
| GATGCTCAACTTGCGTCATT+TGG | + | chr4.2:15659608-15659627 | MS.gene35006:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr4.2:15658179-15658198 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr4.2:15658182-15658201 | None:intergenic | 45.0% | |
| GCTGTAAGAGCTATTGCATG+AGG | + | chr4.2:15659905-15659924 | MS.gene35006:intron | 45.0% | |
| GGATTGCCCTTACTTAGTTG+TGG | - | chr4.2:15658113-15658132 | None:intergenic | 45.0% | |
| GGTACAGTGGCTATAGACAA+AGG | - | chr4.2:15659128-15659147 | None:intergenic | 45.0% | |
| GTAGGGAATGAGTGGAGTAT+GGG | + | chr4.2:15658534-15658553 | MS.gene35006:intron | 45.0% | |
| GTCATGTGACTGTAAGGTCA+CGG | - | chr4.2:15658248-15658267 | None:intergenic | 45.0% | |
| GTCTGCAGTCATCCTTCTAT+TGG | - | chr4.2:15659455-15659474 | None:intergenic | 45.0% | |
| TACAGCTTGACGTGTAGAGT+TGG | - | chr4.2:15659891-15659910 | None:intergenic | 45.0% | |
| TCATGTGACTGTAAGGTCAC+GGG | - | chr4.2:15658247-15658266 | None:intergenic | 45.0% | |
| TGATGGTTGTAGGGAATGAG+TGG | + | chr4.2:15658526-15658545 | MS.gene35006:intron | 45.0% | |
| TGTAGGGAATGAGTGGAGTA+TGG | + | chr4.2:15658533-15658552 | MS.gene35006:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr4.2:15658898-15658917 | None:intergenic | 45.0% |
| ! | ACACTTAGTTGTGGGTACTG+AGG | - | chr4.2:15658301-15658320 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr4.2:15658899-15658918 | None:intergenic | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr4.2:15658214-15658233 | MS.gene35006:intron | 45.0% |
| !! | ACTTAGTTGTGGGTACTGAG+GGG | - | chr4.2:15658299-15658318 | None:intergenic | 45.0% |
| !! | CACTTAGTTGTGGGTACTGA+GGG | - | chr4.2:15658300-15658319 | None:intergenic | 45.0% |
| !! | GGTAGAGGCTTTGTTTCAGA+TGG | + | chr4.2:15657898-15657917 | MS.gene35006:intron | 45.0% |
| ACATCCACATGATCGGTCCT+TGG | + | chr4.2:15660203-15660222 | MS.gene35006:CDS | 50.0% | |
| ACTGAAGCTTCCGCATATGC+AGG | + | chr4.2:15658138-15658157 | MS.gene35006:intron | 50.0% | |
| CAAAGGAAGGACCTTGGTAG+AGG | + | chr4.2:15657883-15657902 | MS.gene35006:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr4.2:15658270-15658289 | MS.gene35006:intron | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr4.2:15658897-15658916 | MS.gene35006:intron | 50.0% | |
| CGAGGTTGAAGATGGCATGT+TGG | + | chr4.2:15658733-15658752 | MS.gene35006:intron | 50.0% | |
| CGCACATTCTTGAGACGTTG+TGG | - | chr4.2:15657663-15657682 | None:intergenic | 50.0% | |
| CTCTACCAAGGTCCTTCCTT+TGG | - | chr4.2:15657885-15657904 | None:intergenic | 50.0% | |
| CTGAAGCTTCCGCATATGCA+GGG | + | chr4.2:15658139-15658158 | MS.gene35006:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr4.2:15658894-15658913 | None:intergenic | 50.0% | |
| GAATTCTACGAACCGAGCCA+AGG | - | chr4.2:15660223-15660242 | None:intergenic | 50.0% | |
| GGTACCGTGATCCAAAGACT+GGG | + | chr4.2:15659181-15659200 | MS.gene35006:intron | 50.0% | |
| GTGGGCATACTGAGATGGAT+AGG | + | chr4.2:15658561-15658580 | MS.gene35006:intron | 50.0% | |
| TATAGCCGACCCCACTTAGT+GGG | + | chr4.2:15658886-15658905 | MS.gene35006:intron | 50.0% | |
| TTATAGCCGACCCCACTTAG+TGG | + | chr4.2:15658885-15658904 | MS.gene35006:intron | 50.0% | |
| ! | ACATCATGGTGGGGGAAAAC+TGG | - | chr4.2:15659477-15659496 | None:intergenic | 50.0% |
| ! | AGGTACCGTGATCCAAAGAC+TGG | + | chr4.2:15659180-15659199 | MS.gene35006:intron | 50.0% |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr4.2:15658900-15658919 | None:intergenic | 50.0% |
| !!! | GGAGCGAGTTTTAGCTAGAG+AGG | + | chr4.2:15657427-15657446 | MS.gene35006:CDS | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr4.2:15658235-15658254 | None:intergenic | 55.0% | |
| ATGCGGAAGCTTCAGTGCAC+CGG | - | chr4.2:15658134-15658153 | None:intergenic | 55.0% | |
| CACATGATCGGTCCTTGGCT+CGG | + | chr4.2:15660208-15660227 | MS.gene35006:CDS | 55.0% | |
| CATATGCAGGGTCCAGGAAG+GGG | + | chr4.2:15658151-15658170 | MS.gene35006:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr4.2:15658892-15658911 | MS.gene35006:intron | 55.0% | |
| CTTCCTGGACCCTGCATATG+CGG | - | chr4.2:15658151-15658170 | None:intergenic | 55.0% | |
| GACGAGTGGGCATACTGAGA+TGG | + | chr4.2:15658556-15658575 | MS.gene35006:intron | 55.0% | |
| GAGTGGAGTATGGGACGAGT+GGG | + | chr4.2:15658543-15658562 | MS.gene35006:intron | 55.0% | |
| GCAGCCCAGTCTTTGGATCA+CGG | - | chr4.2:15659188-15659207 | None:intergenic | 55.0% | |
| GCATATGCAGGGTCCAGGAA+GGG | + | chr4.2:15658150-15658169 | MS.gene35006:intron | 55.0% | |
| TGAGTGGAGTATGGGACGAG+TGG | + | chr4.2:15658542-15658561 | MS.gene35006:intron | 55.0% | |
| ! | ATTGGGTGAAGGCACGTGCA+TGG | - | chr4.2:15659723-15659742 | None:intergenic | 55.0% |
| !! | TGGGTACTGAGGGGTAACCT+TGG | - | chr4.2:15658290-15658309 | None:intergenic | 55.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | - | chr4.2:15658281-15658300 | None:intergenic | 60.0% | |
| CAGGAAGGGGTCCCACCATT+TGG | + | chr4.2:15658164-15658183 | MS.gene35006:intron | 60.0% | |
| CGAGCCAAGGACCGATCATG+TGG | - | chr4.2:15660210-15660229 | None:intergenic | 60.0% | |
| CGCATATGCAGGGTCCAGGA+AGG | + | chr4.2:15658149-15658168 | MS.gene35006:intron | 60.0% | |
| CTTCCGCATATGCAGGGTCC+AGG | + | chr4.2:15658145-15658164 | MS.gene35006:intron | 60.0% | |
| GCGTATGGCAGCCCAGTCTT+TGG | - | chr4.2:15659195-15659214 | None:intergenic | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+TGG | - | chr4.2:15658166-15658185 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 15657224 | 15660279 | 15657224 | ID=MS.gene35006 |
| chr4.2 | mRNA | 15657224 | 15660279 | 15657224 | ID=MS.gene35006.t1;Parent=MS.gene35006 |
| chr4.2 | exon | 15657224 | 15657296 | 15657224 | ID=MS.gene35006.t1.exon1;Parent=MS.gene35006.t1 |
| chr4.2 | CDS | 15657224 | 15657296 | 15657224 | ID=cds.MS.gene35006.t1;Parent=MS.gene35006.t1 |
| chr4.2 | exon | 15657406 | 15657524 | 15657406 | ID=MS.gene35006.t1.exon2;Parent=MS.gene35006.t1 |
| chr4.2 | CDS | 15657406 | 15657524 | 15657406 | ID=cds.MS.gene35006.t1;Parent=MS.gene35006.t1 |
| chr4.2 | exon | 15657609 | 15657677 | 15657609 | ID=MS.gene35006.t1.exon3;Parent=MS.gene35006.t1 |
| chr4.2 | CDS | 15657609 | 15657677 | 15657609 | ID=cds.MS.gene35006.t1;Parent=MS.gene35006.t1 |
| chr4.2 | exon | 15658973 | 15659015 | 15658973 | ID=MS.gene35006.t1.exon4;Parent=MS.gene35006.t1 |
| chr4.2 | CDS | 15658973 | 15659015 | 15658973 | ID=cds.MS.gene35006.t1;Parent=MS.gene35006.t1 |
| chr4.2 | exon | 15659182 | 15659247 | 15659182 | ID=MS.gene35006.t1.exon5;Parent=MS.gene35006.t1 |
| chr4.2 | CDS | 15659182 | 15659247 | 15659182 | ID=cds.MS.gene35006.t1;Parent=MS.gene35006.t1 |
| chr4.2 | exon | 15660083 | 15660279 | 15660083 | ID=MS.gene35006.t1.exon6;Parent=MS.gene35006.t1 |
| chr4.2 | CDS | 15660083 | 15660279 | 15660083 | ID=cds.MS.gene35006.t1;Parent=MS.gene35006.t1 |
| Gene Sequence |
| Protein sequence |
