Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35011.t1 | XP_003608450.1 | 98.3 | 300 | 5 | 0 | 1 | 300 | 1 | 300 | 2.50E-168 | 601.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35011.t1 | Q9FE06 | 70.6 | 310 | 76 | 5 | 1 | 300 | 1 | 305 | 1.1e-119 | 431.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35011.t1 | G7JCS2 | 98.3 | 300 | 5 | 0 | 1 | 300 | 1 | 300 | 1.8e-168 | 601.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051940 | MS.gene35011 | 0.821077 | 4.89E-53 | -1.69E-46 |
| MS.gene053547 | MS.gene35011 | 0.982135 | 2.56E-154 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35011.t1 | MTR_4g094240 | 98.333 | 300 | 5 | 0 | 1 | 300 | 1 | 300 | 0.0 | 602 |
| MS.gene35011.t1 | MTR_2g009070 | 67.213 | 305 | 94 | 5 | 1 | 300 | 1 | 304 | 1.02e-152 | 429 |
| MS.gene35011.t1 | MTR_5g464340 | 59.048 | 315 | 114 | 5 | 1 | 300 | 1 | 315 | 8.88e-124 | 357 |
| MS.gene35011.t1 | MTR_5g064340 | 59.048 | 315 | 114 | 5 | 1 | 300 | 1 | 315 | 8.88e-124 | 357 |
| MS.gene35011.t1 | MTR_5g064345 | 58.544 | 316 | 114 | 6 | 1 | 300 | 1 | 315 | 4.19e-123 | 355 |
| MS.gene35011.t1 | MTR_3g074830 | 58.934 | 319 | 110 | 5 | 1 | 300 | 29 | 345 | 4.34e-123 | 356 |
| MS.gene35011.t1 | MTR_5g064360 | 58.900 | 309 | 110 | 6 | 7 | 300 | 10 | 316 | 5.35e-122 | 352 |
| MS.gene35011.t1 | MTR_3g074860 | 59.783 | 276 | 102 | 3 | 30 | 300 | 33 | 304 | 3.95e-119 | 344 |
| MS.gene35011.t1 | MTR_3g074890 | 59.420 | 276 | 103 | 4 | 30 | 300 | 33 | 304 | 5.74e-118 | 341 |
| MS.gene35011.t1 | MTR_4g033790 | 37.050 | 278 | 157 | 7 | 35 | 296 | 65 | 340 | 7.93e-46 | 158 |
| MS.gene35011.t1 | MTR_1g076470 | 37.500 | 280 | 154 | 7 | 35 | 296 | 64 | 340 | 4.04e-44 | 154 |
| MS.gene35011.t1 | MTR_8g071310 | 57.500 | 80 | 28 | 2 | 227 | 300 | 6 | 85 | 1.28e-23 | 92.4 |
| MS.gene35011.t1 | MTR_8g088900 | 52.222 | 90 | 43 | 0 | 211 | 300 | 283 | 372 | 3.16e-21 | 92.8 |
| MS.gene35011.t1 | MTR_4g013230 | 62.121 | 66 | 22 | 1 | 235 | 300 | 78 | 140 | 4.28e-21 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35011.t1 | AT5G64260 | 70.874 | 309 | 77 | 5 | 1 | 300 | 1 | 305 | 4.28e-154 | 433 |
| MS.gene35011.t1 | AT5G09440 | 62.829 | 304 | 83 | 8 | 1 | 300 | 1 | 278 | 1.87e-124 | 357 |
| MS.gene35011.t1 | AT4G08950 | 58.249 | 297 | 107 | 5 | 21 | 300 | 18 | 314 | 2.56e-120 | 348 |
| MS.gene35011.t1 | AT1G35140 | 57.401 | 277 | 106 | 4 | 35 | 299 | 32 | 308 | 3.73e-110 | 322 |
| MS.gene35011.t1 | AT5G51550 | 38.129 | 278 | 154 | 6 | 35 | 296 | 55 | 330 | 3.98e-49 | 166 |
| MS.gene35011.t1 | AT3G02970 | 33.110 | 299 | 158 | 7 | 41 | 298 | 33 | 330 | 1.25e-47 | 162 |
| MS.gene35011.t1 | AT2G35150 | 37.943 | 282 | 154 | 9 | 35 | 296 | 36 | 316 | 8.62e-42 | 147 |
| MS.gene35011.t1 | AT2G17230 | 36.071 | 280 | 159 | 8 | 35 | 296 | 79 | 356 | 1.29e-41 | 147 |
Find 103 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCGAGAACTCCTTATATT+TGG | 0.165217 | 4.4:+20937815 | MS.gene35011:CDS |
| GATAAACTTGGCTACACTTT+TGG | 0.278278 | 4.4:+20937960 | MS.gene35011:CDS |
| GTTTACGAAATCAACGATTA+TGG | 0.306298 | 4.4:-20937509 | None:intergenic |
| CATAACGGCCAGCTTCTTAA+AGG | 0.308448 | 4.4:+20937433 | MS.gene35011:CDS |
| ACACTTGGAAAGAATCTAAA+AGG | 0.309873 | 4.4:+20937652 | MS.gene35011:CDS |
| CTTTAAGAAGCTGGCCGTTA+TGG | 0.326946 | 4.4:-20937432 | None:intergenic |
| TTCTATAACTGTTGTGCTTA+CGG | 0.335569 | 4.4:+20937717 | MS.gene35011:CDS |
| TATAATGCCCACGGTGCTAA+TGG | 0.341608 | 4.4:+20938138 | MS.gene35011:CDS |
| GTTTGGAAGTGGAGCTTATC+CGG | 0.353040 | 4.4:+20938071 | MS.gene35011:CDS |
| CGATTATGGAGCGTTGGATT+GGG | 0.353404 | 4.4:-20937495 | None:intergenic |
| GGTGTCTGTGGTCCGTAAAT+AGG | 0.356716 | 4.4:-20937892 | None:intergenic |
| GCCTCAAGCGGCGCCGCCGC+TGG | 0.361969 | 4.4:-20938027 | None:intergenic |
| AGCGAGAACTCCTTATATTT+GGG | 0.363800 | 4.4:+20937816 | MS.gene35011:CDS |
| GCGTTTCCAACCCAAATATA+AGG | 0.364348 | 4.4:-20937826 | None:intergenic |
| GCGGCGCCGCCGCTGGTCCC+TGG | 0.377626 | 4.4:-20938020 | None:intergenic |
| TGGAAATACCCGTTGTTAAA+CGG | 0.380902 | 4.4:-20938000 | None:intergenic |
| GCGGGTCGGGTTCTTGTCGA+TGG | 0.383282 | 4.4:+20938099 | MS.gene35011:CDS |
| AAAAGGCCACGCGCATTGTC+CGG | 0.384613 | 4.4:-20937863 | None:intergenic |
| GTTCTACCTACACTCTCCTT+TGG | 0.384919 | 4.4:+20937373 | MS.gene35011:CDS |
| AGCTCACCGTTAATCTAATC+TGG | 0.389734 | 4.4:+20937458 | MS.gene35011:CDS |
| TCCGTACCAGATTAGATTAA+CGG | 0.397594 | 4.4:-20937464 | None:intergenic |
| GTTTAACAACGGGTATTTCC+AGG | 0.398783 | 4.4:+20938002 | MS.gene35011:CDS |
| ACGATTATGGAGCGTTGGAT+TGG | 0.409756 | 4.4:-20937496 | None:intergenic |
| GCATGCAAGACTCTCGTCTA+AGG | 0.415325 | 4.4:+20938204 | MS.gene35011:CDS |
| CTACACCCTGCTTATACACT+TGG | 0.419437 | 4.4:+20937637 | MS.gene35011:CDS |
| AACGGTGACGTTGGTGTTGA+CGG | 0.420282 | 4.4:+20937931 | MS.gene35011:CDS |
| CTTATCCGGGTTACGCGGGT+CGG | 0.429586 | 4.4:+20938085 | MS.gene35011:CDS |
| TTACGAATCCGTTTAACAAC+GGG | 0.434370 | 4.4:+20937992 | MS.gene35011:CDS |
| TGAGCTTTCCTTTAAGAAGC+TGG | 0.450946 | 4.4:-20937441 | None:intergenic |
| TTCTTTCCAAGTGTATAAGC+AGG | 0.455827 | 4.4:-20937643 | None:intergenic |
| GCGAAAGATGTTAACGTTGA+AGG | 0.459961 | 4.4:+20937739 | MS.gene35011:CDS |
| ACGGCGTGTACTGGTGTGTT+TGG | 0.462929 | 4.4:+20938054 | MS.gene35011:CDS |
| CGGGTCGGGTTCTTGTCGAT+GGG | 0.475289 | 4.4:+20938100 | MS.gene35011:CDS |
| GGTCCCACATCGCCGGCAAA+AGG | 0.475314 | 4.4:-20938170 | None:intergenic |
| GAGGCTGTAACGGCGTGTAC+TGG | 0.482633 | 4.4:+20938045 | MS.gene35011:CDS |
| AGAACTCCTTATATTTGGGT+TGG | 0.485130 | 4.4:+20937820 | MS.gene35011:CDS |
| ACCAGCGGCGGCGCCGCTTG+AGG | 0.487470 | 4.4:+20938026 | MS.gene35011:CDS |
| GGCGCCGCTTGAGGCTGTAA+CGG | 0.487572 | 4.4:+20938035 | MS.gene35011:CDS |
| GATGTGGGACCCTCAAACTT+CGG | 0.490246 | 4.4:+20938182 | MS.gene35011:CDS |
| ATAATGCCCACGGTGCTAAT+GGG | 0.490999 | 4.4:+20938139 | MS.gene35011:CDS |
| AACGCTGAGACGCTCTGTCC+CGG | 0.491547 | 4.4:+20937844 | MS.gene35011:CDS |
| GATGGCAAAGTTGTAATTAG+AGG | 0.491892 | 4.4:-20937326 | None:intergenic |
| CACGCGGAGGCTGATGGAAG+AGG | 0.494301 | 4.4:-20937553 | None:intergenic |
| TTCCATCAGCCTCCGCGTGG+TGG | 0.494962 | 4.4:+20937557 | MS.gene35011:CDS |
| TCTTGCATGCCGAAGTTTGA+GGG | 0.503332 | 4.4:-20938191 | None:intergenic |
| TTATCCGGGTTACGCGGGTC+GGG | 0.503941 | 4.4:+20938086 | MS.gene35011:CDS |
| GTCTTGCATGCCGAAGTTTG+AGG | 0.507065 | 4.4:-20938192 | None:intergenic |
| AAAGGCCACGCGCATTGTCC+GGG | 0.507372 | 4.4:-20937862 | None:intergenic |
| CCGTAAATAGGTTGATGAAA+AGG | 0.512799 | 4.4:-20937880 | None:intergenic |
| GGTTCTGTCCGACGTGGCAA+CGG | 0.513391 | 4.4:+20937790 | MS.gene35011:CDS |
| TGTACTGGTGTGTTTGGAAG+TGG | 0.514432 | 4.4:+20938060 | MS.gene35011:CDS |
| TTTGGAAGTGGAGCTTATCC+GGG | 0.516439 | 4.4:+20938072 | MS.gene35011:CDS |
| ACGGTGACGTTGGTGTTGAC+GGG | 0.523374 | 4.4:+20937932 | MS.gene35011:CDS |
| TCAACACCAACGTCACCGTT+AGG | 0.525171 | 4.4:-20937928 | None:intergenic |
| GGCTGATGGAAGAGGCGCAC+CGG | 0.531178 | 4.4:-20937545 | None:intergenic |
| TTCCACCACGCGGAGGCTGA+TGG | 0.535382 | 4.4:-20937559 | None:intergenic |
| GGATCCTCTGCTCTTATCGT+AGG | 0.545765 | 4.4:+20937604 | MS.gene35011:CDS |
| GTTTGAGGGTCCCACATCGC+CGG | 0.553736 | 4.4:-20938177 | None:intergenic |
| CTTCCTCCCATTAGCACCGT+GGG | 0.556886 | 4.4:-20938145 | None:intergenic |
| AGAACCCGACCCGCGTAACC+CGG | 0.558075 | 4.4:-20938090 | None:intergenic |
| TGGAGCTTATCCGGGTTACG+CGG | 0.558690 | 4.4:+20938080 | MS.gene35011:CDS |
| TTTAACAACGGGTATTTCCA+GGG | 0.558721 | 4.4:+20938003 | MS.gene35011:CDS |
| TTCTTGTACAAGCTCTCCAA+AGG | 0.559281 | 4.4:-20937389 | None:intergenic |
| ACCGTTAATCTAATCTGGTA+CGG | 0.560213 | 4.4:+20937463 | MS.gene35011:CDS |
| GTTCTTGTCGATGGGGCAAG+TGG | 0.562367 | 4.4:+20938108 | MS.gene35011:CDS |
| AATCAACGATTATGGAGCGT+TGG | 0.567660 | 4.4:-20937501 | None:intergenic |
| GATTCTGTATGAGTCGTTGT+GGG | 0.570975 | 4.4:+20937761 | MS.gene35011:CDS |
| TCTGTCCGACGTGGCAACGG+TGG | 0.574227 | 4.4:+20937793 | MS.gene35011:CDS |
| GATTATGGAGCGTTGGATTG+GGG | 0.576658 | 4.4:-20937494 | None:intergenic |
| CAAGTGTATAAGCAGGGTGT+AGG | 0.581110 | 4.4:-20937636 | None:intergenic |
| GCCACGTCGGACAGAACCAT+GGG | 0.589685 | 4.4:-20937785 | None:intergenic |
| TGATGGAAGAGGCGCACCGG+TGG | 0.590504 | 4.4:-20937542 | None:intergenic |
| GCAACTAACGGCGGTGTCTG+TGG | 0.596309 | 4.4:-20937904 | None:intergenic |
| CACGCCGTTACAGCCTCAAG+CGG | 0.597309 | 4.4:-20938039 | None:intergenic |
| GATCCTCTGCTCTTATCGTA+GGG | 0.608173 | 4.4:+20937605 | MS.gene35011:CDS |
| TGACGGGATGGTGATAAACT+TGG | 0.608872 | 4.4:+20937948 | MS.gene35011:CDS |
| TGCCACGTCGGACAGAACCA+TGG | 0.609787 | 4.4:-20937786 | None:intergenic |
| TGACGTTGGTGTTGACGGGA+TGG | 0.610885 | 4.4:+20937936 | MS.gene35011:CDS |
| TCTTTCCAAGTGTATAAGCA+GGG | 0.611108 | 4.4:-20937642 | None:intergenic |
| GTTACGAATCCGTTTAACAA+CGG | 0.616094 | 4.4:+20937991 | MS.gene35011:CDS |
| CTTGTACTCAAGTACCATAA+CGG | 0.616114 | 4.4:+20937418 | MS.gene35011:CDS |
| TTATGGTACTTGAGTACAAG+TGG | 0.616668 | 4.4:-20937415 | None:intergenic |
| GGAGCTTATCCGGGTTACGC+GGG | 0.618271 | 4.4:+20938081 | MS.gene35011:CDS |
| GGATTCTGTATGAGTCGTTG+TGG | 0.618437 | 4.4:+20937760 | MS.gene35011:CDS |
| GTAAACTCTCTCAGCACCAC+CGG | 0.619787 | 4.4:+20937526 | MS.gene35011:CDS |
| ATGAGTCGTTGTGGGACCCA+TGG | 0.620367 | 4.4:+20937769 | MS.gene35011:CDS |
| CGGGTATTTCCAGGGACCAG+CGG | 0.622533 | 4.4:+20938011 | MS.gene35011:CDS |
| TCTGTCCCGGACAATGCGCG+TGG | 0.629534 | 4.4:+20937857 | MS.gene35011:CDS |
| ATGCCCACGGTGCTAATGGG+AGG | 0.630632 | 4.4:+20938142 | MS.gene35011:CDS |
| GTTGCTCCTAACGGTGACGT+TGG | 0.634818 | 4.4:+20937922 | MS.gene35011:CDS |
| CCGCCGTTAGTTGCTCCTAA+CGG | 0.640396 | 4.4:+20937913 | MS.gene35011:CDS |
| GGATCTAGCTATAATGCCCA+CGG | 0.645458 | 4.4:+20938129 | MS.gene35011:CDS |
| ACCCATGGTTCTGTCCGACG+TGG | 0.645695 | 4.4:+20937784 | MS.gene35011:CDS |
| GTATTTCCAGGGACCAGCGG+CGG | 0.646875 | 4.4:+20938014 | MS.gene35011:CDS |
| TCGCTCCACCGTTGCCACGT+CGG | 0.658907 | 4.4:-20937798 | None:intergenic |
| CTCTTCCATCAGCCTCCGCG+TGG | 0.664341 | 4.4:+20937554 | MS.gene35011:CDS |
| TCACCGTTAGGAGCAACTAA+CGG | 0.675396 | 4.4:-20937916 | None:intergenic |
| AGCTCTCCAAAGGAGAGTGT+AGG | 0.679417 | 4.4:-20937379 | None:intergenic |
| GGGTCGGGTTCTTGTCGATG+GGG | 0.683451 | 4.4:+20938101 | MS.gene35011:CDS |
| TTTCCCTACGATAAGAGCAG+AGG | 0.696161 | 4.4:-20937608 | None:intergenic |
| ACTTCCTCCCATTAGCACCG+TGG | 0.699326 | 4.4:-20938146 | None:intergenic |
| CAACACTGCAGAGAGAACGA+TGG | 0.723685 | 4.4:-20937344 | None:intergenic |
| CCGTTAGGAGCAACTAACGG+CGG | 0.783376 | 4.4:-20937913 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GAAAACTACTGAAAAATACA+AGG | + | chr4.4:20937579-20937598 | MS.gene35011:CDS | 25.0% |
| ACACTTGGAAAGAATCTAAA+AGG | + | chr4.4:20937652-20937671 | MS.gene35011:CDS | 30.0% | |
| ACTACTGAAAAATACAAGGT+AGG | + | chr4.4:20937583-20937602 | MS.gene35011:CDS | 30.0% | |
| GTTTACGAAATCAACGATTA+TGG | - | chr4.4:20937512-20937531 | None:intergenic | 30.0% | |
| TTCTATAACTGTTGTGCTTA+CGG | + | chr4.4:20937717-20937736 | MS.gene35011:CDS | 30.0% | |
| ! | CCTTTTCATCAACCTATTTA+CGG | + | chr4.4:20937880-20937899 | MS.gene35011:CDS | 30.0% |
| ACCGTTAATCTAATCTGGTA+CGG | + | chr4.4:20937463-20937482 | MS.gene35011:CDS | 35.0% | |
| AGAACTCCTTATATTTGGGT+TGG | + | chr4.4:20937820-20937839 | MS.gene35011:CDS | 35.0% | |
| AGCGAGAACTCCTTATATTT+GGG | + | chr4.4:20937816-20937835 | MS.gene35011:CDS | 35.0% | |
| CTTGTACTCAAGTACCATAA+CGG | + | chr4.4:20937418-20937437 | MS.gene35011:CDS | 35.0% | |
| GATGGCAAAGTTGTAATTAG+AGG | - | chr4.4:20937329-20937348 | None:intergenic | 35.0% | |
| GTTACGAATCCGTTTAACAA+CGG | + | chr4.4:20937991-20938010 | MS.gene35011:CDS | 35.0% | |
| TCCGTACCAGATTAGATTAA+CGG | - | chr4.4:20937467-20937486 | None:intergenic | 35.0% | |
| TCTTTCCAAGTGTATAAGCA+GGG | - | chr4.4:20937645-20937664 | None:intergenic | 35.0% | |
| TGGAAATACCCGTTGTTAAA+CGG | - | chr4.4:20938003-20938022 | None:intergenic | 35.0% | |
| TTACGAATCCGTTTAACAAC+GGG | + | chr4.4:20937992-20938011 | MS.gene35011:CDS | 35.0% | |
| TTATGGTACTTGAGTACAAG+TGG | - | chr4.4:20937418-20937437 | None:intergenic | 35.0% | |
| TTCTTTCCAAGTGTATAAGC+AGG | - | chr4.4:20937646-20937665 | None:intergenic | 35.0% | |
| TTTAACAACGGGTATTTCCA+GGG | + | chr4.4:20938003-20938022 | MS.gene35011:CDS | 35.0% | |
| ! | GATAAACTTGGCTACACTTT+TGG | + | chr4.4:20937960-20937979 | MS.gene35011:CDS | 35.0% |
| !! | CCGTAAATAGGTTGATGAAA+AGG | - | chr4.4:20937883-20937902 | None:intergenic | 35.0% |
| AATCAACGATTATGGAGCGT+TGG | - | chr4.4:20937504-20937523 | None:intergenic | 40.0% | |
| AGCTCACCGTTAATCTAATC+TGG | + | chr4.4:20937458-20937477 | MS.gene35011:CDS | 40.0% | |
| GAGCGAGAACTCCTTATATT+TGG | + | chr4.4:20937815-20937834 | MS.gene35011:CDS | 40.0% | |
| GATTCTGTATGAGTCGTTGT+GGG | + | chr4.4:20937761-20937780 | MS.gene35011:CDS | 40.0% | |
| GCGAAAGATGTTAACGTTGA+AGG | + | chr4.4:20937739-20937758 | MS.gene35011:CDS | 40.0% | |
| GCGTTTCCAACCCAAATATA+AGG | - | chr4.4:20937829-20937848 | None:intergenic | 40.0% | |
| GTTTAACAACGGGTATTTCC+AGG | + | chr4.4:20938002-20938021 | MS.gene35011:CDS | 40.0% | |
| TTCTTGTACAAGCTCTCCAA+AGG | - | chr4.4:20937392-20937411 | None:intergenic | 40.0% | |
| ! | TGAGCTTTCCTTTAAGAAGC+TGG | - | chr4.4:20937444-20937463 | None:intergenic | 40.0% |
| CAAGTGTATAAGCAGGGTGT+AGG | - | chr4.4:20937639-20937658 | None:intergenic | 45.0% | |
| CATAACGGCCAGCTTCTTAA+AGG | + | chr4.4:20937433-20937452 | MS.gene35011:CDS | 45.0% | |
| CTACACCCTGCTTATACACT+TGG | + | chr4.4:20937637-20937656 | MS.gene35011:CDS | 45.0% | |
| GATCCTCTGCTCTTATCGTA+GGG | + | chr4.4:20937605-20937624 | MS.gene35011:CDS | 45.0% | |
| GGATCTAGCTATAATGCCCA+CGG | + | chr4.4:20938129-20938148 | MS.gene35011:CDS | 45.0% | |
| GGATTCTGTATGAGTCGTTG+TGG | + | chr4.4:20937760-20937779 | MS.gene35011:CDS | 45.0% | |
| GTTCTACCTACACTCTCCTT+TGG | + | chr4.4:20937373-20937392 | MS.gene35011:CDS | 45.0% | |
| GTTTGGAAGTGGAGCTTATC+CGG | + | chr4.4:20938071-20938090 | MS.gene35011:CDS | 45.0% | |
| TCACCGTTAGGAGCAACTAA+CGG | - | chr4.4:20937919-20937938 | None:intergenic | 45.0% | |
| TCTTGCATGCCGAAGTTTGA+GGG | - | chr4.4:20938194-20938213 | None:intergenic | 45.0% | |
| TGACGGGATGGTGATAAACT+TGG | + | chr4.4:20937948-20937967 | MS.gene35011:CDS | 45.0% | |
| TTTCCCTACGATAAGAGCAG+AGG | - | chr4.4:20937611-20937630 | None:intergenic | 45.0% | |
| TTTGGAAGTGGAGCTTATCC+GGG | + | chr4.4:20938072-20938091 | MS.gene35011:CDS | 45.0% | |
| ! | AACTTGGCTACACTTTTGGC+TGG | + | chr4.4:20937964-20937983 | MS.gene35011:CDS | 45.0% |
| ! | ATAATGCCCACGGTGCTAAT+GGG | + | chr4.4:20938139-20938158 | MS.gene35011:CDS | 45.0% |
| ! | CTTTAAGAAGCTGGCCGTTA+TGG | - | chr4.4:20937435-20937454 | None:intergenic | 45.0% |
| ! | TATAATGCCCACGGTGCTAA+TGG | + | chr4.4:20938138-20938157 | MS.gene35011:CDS | 45.0% |
| ! | TGTACTGGTGTGTTTGGAAG+TGG | + | chr4.4:20938060-20938079 | MS.gene35011:CDS | 45.0% |
| ! | TTCAGTAGTTTTCCACCACG+CGG | - | chr4.4:20937572-20937591 | None:intergenic | 45.0% |
| !! | ACGATTATGGAGCGTTGGAT+TGG | - | chr4.4:20937499-20937518 | None:intergenic | 45.0% |
| !! | CGATTATGGAGCGTTGGATT+GGG | - | chr4.4:20937498-20937517 | None:intergenic | 45.0% |
| !! | GATTATGGAGCGTTGGATTG+GGG | - | chr4.4:20937497-20937516 | None:intergenic | 45.0% |
| CAACACTGCAGAGAGAACGA+TGG | - | chr4.4:20937347-20937366 | None:intergenic | 50.0% | |
| GATGTGGGACCCTCAAACTT+CGG | + | chr4.4:20938182-20938201 | MS.gene35011:CDS | 50.0% | |
| GGATCCTCTGCTCTTATCGT+AGG | + | chr4.4:20937604-20937623 | MS.gene35011:CDS | 50.0% | |
| GGTGTCTGTGGTCCGTAAAT+AGG | - | chr4.4:20937895-20937914 | None:intergenic | 50.0% | |
| GTAAACTCTCTCAGCACCAC+CGG | + | chr4.4:20937526-20937545 | MS.gene35011:CDS | 50.0% | |
| GTCTTGCATGCCGAAGTTTG+AGG | - | chr4.4:20938195-20938214 | None:intergenic | 50.0% | |
| TCAACACCAACGTCACCGTT+AGG | - | chr4.4:20937931-20937950 | None:intergenic | 50.0% | |
| ! | AGCTCTCCAAAGGAGAGTGT+AGG | - | chr4.4:20937382-20937401 | None:intergenic | 50.0% |
| !! | AACGGTGACGTTGGTGTTGA+CGG | + | chr4.4:20937931-20937950 | MS.gene35011:CDS | 50.0% |
| !!! | TGGGAGGAAGTACCTTTTGC+CGG | + | chr4.4:20938158-20938177 | MS.gene35011:CDS | 50.0% |
| AAAAGGCCACGCGCATTGTC+CGG | - | chr4.4:20937866-20937885 | None:intergenic | 55.0% | |
| ACTTCCTCCCATTAGCACCG+TGG | - | chr4.4:20938149-20938168 | None:intergenic | 55.0% | |
| ATGAGTCGTTGTGGGACCCA+TGG | + | chr4.4:20937769-20937788 | MS.gene35011:CDS | 55.0% | |
| CCGCCGTTAGTTGCTCCTAA+CGG | + | chr4.4:20937913-20937932 | MS.gene35011:CDS | 55.0% | |
| CCGTTAGGAGCAACTAACGG+CGG | - | chr4.4:20937916-20937935 | None:intergenic | 55.0% | |
| CTTCCTCCCATTAGCACCGT+GGG | - | chr4.4:20938148-20938167 | None:intergenic | 55.0% | |
| GTTCTTGTCGATGGGGCAAG+TGG | + | chr4.4:20938108-20938127 | MS.gene35011:CDS | 55.0% | |
| GTTGCTCCTAACGGTGACGT+TGG | + | chr4.4:20937922-20937941 | MS.gene35011:CDS | 55.0% | |
| TGGAGCTTATCCGGGTTACG+CGG | + | chr4.4:20938080-20938099 | MS.gene35011:CDS | 55.0% | |
| ! | ACGGCGTGTACTGGTGTGTT+TGG | + | chr4.4:20938054-20938073 | MS.gene35011:CDS | 55.0% |
| ! | AGTACCTTTTGCCGGCGATG+TGG | + | chr4.4:20938166-20938185 | MS.gene35011:CDS | 55.0% |
| ! | AGTAGTTTTCCACCACGCGG+AGG | - | chr4.4:20937569-20937588 | None:intergenic | 55.0% |
| ! | GTACCTTTTGCCGGCGATGT+GGG | + | chr4.4:20938167-20938186 | MS.gene35011:CDS | 55.0% |
| !! | ACGGTGACGTTGGTGTTGAC+GGG | + | chr4.4:20937932-20937951 | MS.gene35011:CDS | 55.0% |
| !! | TGACGTTGGTGTTGACGGGA+TGG | + | chr4.4:20937936-20937955 | MS.gene35011:CDS | 55.0% |
| AAAGGCCACGCGCATTGTCC+GGG | - | chr4.4:20937865-20937884 | None:intergenic | 60.0% | |
| AACGCTGAGACGCTCTGTCC+CGG | + | chr4.4:20937844-20937863 | MS.gene35011:CDS | 60.0% | |
| CACGCCGTTACAGCCTCAAG+CGG | - | chr4.4:20938042-20938061 | None:intergenic | 60.0% | |
| CGGGTATTTCCAGGGACCAG+CGG | + | chr4.4:20938011-20938030 | MS.gene35011:CDS | 60.0% | |
| CGGGTCGGGTTCTTGTCGAT+GGG | + | chr4.4:20938100-20938119 | MS.gene35011:CDS | 60.0% | |
| CTTATCCGGGTTACGCGGGT+CGG | + | chr4.4:20938085-20938104 | MS.gene35011:CDS | 60.0% | |
| GAGGCTGTAACGGCGTGTAC+TGG | + | chr4.4:20938045-20938064 | MS.gene35011:CDS | 60.0% | |
| GCAACTAACGGCGGTGTCTG+TGG | - | chr4.4:20937907-20937926 | None:intergenic | 60.0% | |
| GCCACGTCGGACAGAACCAT+GGG | - | chr4.4:20937788-20937807 | None:intergenic | 60.0% | |
| GGAGCTTATCCGGGTTACGC+GGG | + | chr4.4:20938081-20938100 | MS.gene35011:CDS | 60.0% | |
| GGGTCGGGTTCTTGTCGATG+GGG | + | chr4.4:20938101-20938120 | MS.gene35011:CDS | 60.0% | |
| GGTTCTGTCCGACGTGGCAA+CGG | + | chr4.4:20937790-20937809 | MS.gene35011:CDS | 60.0% | |
| GTATTTCCAGGGACCAGCGG+CGG | + | chr4.4:20938014-20938033 | MS.gene35011:CDS | 60.0% | |
| GTTTGAGGGTCCCACATCGC+CGG | - | chr4.4:20938180-20938199 | None:intergenic | 60.0% | |
| TGCCACGTCGGACAGAACCA+TGG | - | chr4.4:20937789-20937808 | None:intergenic | 60.0% | |
| TTATCCGGGTTACGCGGGTC+GGG | + | chr4.4:20938086-20938105 | MS.gene35011:CDS | 60.0% | |
| ! | ACCCATGGTTCTGTCCGACG+TGG | + | chr4.4:20937784-20937803 | MS.gene35011:CDS | 60.0% |
| ! | ATGCCCACGGTGCTAATGGG+AGG | + | chr4.4:20938142-20938161 | MS.gene35011:CDS | 60.0% |
| AGAACCCGACCCGCGTAACC+CGG | - | chr4.4:20938093-20938112 | None:intergenic | 65.0% | |
| CACGCGGAGGCTGATGGAAG+AGG | - | chr4.4:20937556-20937575 | None:intergenic | 65.0% | |
| CTCTTCCATCAGCCTCCGCG+TGG | + | chr4.4:20937554-20937573 | MS.gene35011:CDS | 65.0% | |
| GCGGGTCGGGTTCTTGTCGA+TGG | + | chr4.4:20938099-20938118 | MS.gene35011:CDS | 65.0% | |
| GGCGCCGCTTGAGGCTGTAA+CGG | + | chr4.4:20938035-20938054 | MS.gene35011:CDS | 65.0% | |
| GGTCCCACATCGCCGGCAAA+AGG | - | chr4.4:20938173-20938192 | None:intergenic | 65.0% | |
| TCGCTCCACCGTTGCCACGT+CGG | - | chr4.4:20937801-20937820 | None:intergenic | 65.0% | |
| TCTGTCCCGGACAATGCGCG+TGG | + | chr4.4:20937857-20937876 | MS.gene35011:CDS | 65.0% | |
| TCTGTCCGACGTGGCAACGG+TGG | + | chr4.4:20937793-20937812 | MS.gene35011:CDS | 65.0% | |
| TTCCACCACGCGGAGGCTGA+TGG | - | chr4.4:20937562-20937581 | None:intergenic | 65.0% | |
| TTCCATCAGCCTCCGCGTGG+TGG | + | chr4.4:20937557-20937576 | MS.gene35011:CDS | 65.0% | |
| ! | GGCTGATGGAAGAGGCGCAC+CGG | - | chr4.4:20937548-20937567 | None:intergenic | 65.0% |
| ! | TGATGGAAGAGGCGCACCGG+TGG | - | chr4.4:20937545-20937564 | None:intergenic | 65.0% |
| ! | ACCAGCGGCGGCGCCGCTTG+AGG | + | chr4.4:20938026-20938045 | MS.gene35011:CDS | 80.0% |
| ! | GCCTCAAGCGGCGCCGCCGC+TGG | - | chr4.4:20938030-20938049 | None:intergenic | 85.0% |
| ! | GCGGCGCCGCCGCTGGTCCC+TGG | - | chr4.4:20938023-20938042 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 20937322 | 20938224 | 20937322 | ID=MS.gene35011 |
| chr4.4 | mRNA | 20937322 | 20938224 | 20937322 | ID=MS.gene35011.t1;Parent=MS.gene35011 |
| chr4.4 | exon | 20937322 | 20938224 | 20937322 | ID=MS.gene35011.t1.exon1;Parent=MS.gene35011.t1 |
| chr4.4 | CDS | 20937322 | 20938224 | 20937322 | ID=cds.MS.gene35011.t1;Parent=MS.gene35011.t1 |
| Gene Sequence |
| Protein sequence |
