AlfalfaGEDB | MS.gene051940

M. sativa cultivar XinJiangDaYe / MS.gene051940

KEGG: -
GO: -
PFAM: PF03168.16

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051940.t1	GAU22022.1	86.3	263	29	3	1	263	1	256	2.20E-99	372.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051940.t1	Q9ZVD2	27.4	237	161	6	1	227	1	236	2.2e-12	74.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051940.t1	A0A2Z6M998	86.3	263	29	3	1	263	1	256	1.6e-99	372.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051940	MS.gene057020	0.955701	1.65E-113	-1.69E-46
MS.gene051940	MS.gene06154	0.803921	2.77E-49	-1.69E-46
MS.gene051940	MS.gene065896	0.835672	1.46E-56	-1.69E-46
MS.gene051940	MS.gene25783	0.816876	4.41E-52	-1.69E-46
MS.gene051940	MS.gene35011	0.821077	4.89E-53	-1.69E-46
MS.gene051940	MS.gene56291	0.818524	1.87E-52	-1.69E-46
MS.gene051940	MS.gene62631	0.8085	3.00E-50	-1.69E-46
MS.gene051940	MS.gene63545	0.814745	1.32E-51	-1.69E-46
MS.gene051940	MS.gene76140	0.938795	3.72E-99	-1.69E-46
MS.gene051940	MS.gene85211	0.980206	1.09E-149	-1.69E-46
MS.gene051940	MS.gene87467	-0.807369	5.23E-50	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051940.t1	MTR_2g100060	94.318	264	10	2	1	263	1	260	6.23e-149	416
MS.gene051940.t1	MTR_8g016370	47.104	259	97	6	5	263	7	225	6.17e-71	218
MS.gene051940.t1	MTR_3g104460	42.481	266	133	8	7	262	4	259	3.62e-66	206
MS.gene051940.t1	MTR_5g087760	30.041	243	142	7	1	227	1	231	1.75e-29	112
MS.gene051940.t1	MTR_5g076170	34.343	198	121	4	31	226	47	237	6.78e-24	97.4
MS.gene051940.t1	MTR_2g012550	29.864	221	134	6	18	230	40	247	5.78e-23	95.1
MS.gene051940.t1	MTR_3g078800	28.750	240	147	6	1	227	1	229	3.84e-22	92.8
MS.gene051940.t1	MTR_7g106000	28.947	228	145	9	34	253	7	225	3.33e-20	86.7
MS.gene051940.t1	MTR_3g063310	32.867	143	92	3	86	226	86	226	6.26e-19	84.0
MS.gene051940.t1	MTR_1g077560	30.000	190	130	2	61	249	60	247	5.37e-18	81.3
MS.gene051940.t1	MTR_7g105970	29.245	212	126	10	53	254	29	226	1.95e-15	73.6
MS.gene051940.t1	MTR_4g119428	27.805	205	127	5	41	227	12	213	3.18e-14	70.9
MS.gene051940.t1	MTR_7g118270	27.895	190	127	4	69	254	46	229	7.06e-14	69.3
MS.gene051940.t1	MTR_3g078820	29.078	141	99	1	87	227	44	183	1.01e-13	68.6
MS.gene051940.t1	MTR_1g057270	25.824	182	123	6	84	259	72	247	1.51e-13	68.9
MS.gene051940.t1	MTR_1g057400	26.606	218	135	9	49	253	3	208	8.08e-13	66.2
MS.gene051940.t1	MTR_6g071410	25.786	159	113	4	61	215	2	159	1.19e-12	65.9
MS.gene051940.t1	MTR_6g070890	25.786	159	113	4	61	215	2	159	1.19e-12	65.9
MS.gene051940.t1	MTR_2g011350	23.429	175	127	2	80	254	35	202	1.22e-12	65.5
MS.gene051940.t1	MTR_3g062470	22.905	179	132	4	62	238	66	240	5.53e-12	64.3
MS.gene051940.t1	MTR_7g116930	26.829	205	129	5	30	229	33	221	5.60e-12	64.3
MS.gene051940.t1	MTR_6g471090	27.160	162	99	5	60	215	9	157	9.32e-12	63.2
MS.gene051940.t1	MTR_7g106010	26.407	231	152	8	34	253	3	226	1.97e-11	62.4
MS.gene051940.t1	MTR_3g074150	21.827	197	138	4	37	227	36	222	2.19e-11	62.8
MS.gene051940.t1	MTR_7g106050	26.286	175	116	5	54	226	14	177	2.77e-11	62.0
MS.gene051940.t1	MTR_6g070900	26.882	186	116	8	62	235	2	179	2.81e-11	62.0
MS.gene051940.t1	MTR_6g071400	26.882	186	116	8	62	235	2	179	2.81e-11	62.0
MS.gene051940.t1	MTR_7g106030	26.887	212	133	9	54	252	27	229	4.30e-11	61.6
MS.gene051940.t1	MTR_3g092790	26.619	139	99	3	92	229	49	185	7.62e-11	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051940.t1	AT1G17620	47.015	268	126	4	3	262	4	263	4.79e-64	201
MS.gene051940.t1	AT5G11890	35.254	295	149	9	1	262	1	286	8.31e-45	152
MS.gene051940.t1	AT2G27080	31.557	244	142	7	1	227	1	236	1.50e-30	115
MS.gene051940.t1	AT2G27080	31.557	244	142	7	1	227	1	236	1.50e-30	115
MS.gene051940.t1	AT1G65690	31.056	161	107	3	68	226	68	226	5.22e-21	89.4
MS.gene051940.t1	AT5G36970	27.586	261	173	8	1	258	1	248	3.07e-19	84.7
MS.gene051940.t1	AT2G35980	27.982	218	151	5	40	253	11	226	1.16e-17	79.7
MS.gene051940.t1	AT5G21130	26.437	174	126	2	54	226	84	256	3.18e-17	79.7
MS.gene051940.t1	AT3G11650	26.131	199	139	6	60	254	45	239	3.08e-16	76.3
MS.gene051940.t1	AT1G54540	28.037	214	149	3	37	249	27	236	5.50e-16	75.5
MS.gene051940.t1	AT5G06320	27.660	188	126	5	70	253	49	230	2.60e-14	70.9
MS.gene051940.t1	AT4G01410	23.737	198	138	5	59	254	41	227	8.40e-13	66.6
MS.gene051940.t1	AT4G01110	25.888	197	122	5	75	261	74	256	2.75e-12	65.5
MS.gene051940.t1	AT5G22870	23.158	190	133	3	68	254	28	207	4.43e-12	63.9
MS.gene051940.t1	AT2G46300	28.662	157	103	4	84	232	77	232	1.67e-11	63.2
MS.gene051940.t1	AT2G27260	25.926	216	149	4	31	244	31	237	7.65e-11	61.2
MS.gene051940.t1	AT5G53730	25.269	186	126	5	72	254	38	213	8.36e-11	60.5

Find 86 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCGAAGTTGACGCCGTTAC+TGG	0.277675	2.2:-3040681	None:intergenic
GCTGCTGCACCTTCTTCTTC+TGG	0.279365	2.2:+3040145	MS.gene051940:CDS
CTTCTCCTCCTCGGCGTAAC+GGG	0.331250	2.2:+3040192	MS.gene051940:CDS
ACGAAGGTGATATGTTTGTT+AGG	0.332211	2.2:-3040348	None:intergenic
TGCTTGACCAGTACTCAAAA+TGG	0.356336	2.2:-3040478	None:intergenic
TTGGTCATGGGTTTGGCGGC+GGG	0.359331	2.2:-3039982	None:intergenic
CGAAGGTGATATGTTTGTTA+GGG	0.379442	2.2:-3040347	None:intergenic
AGCAGCAACGGCGGCGGGTA+CGG	0.382447	2.2:-3040128	None:intergenic
CTTCATCAATTAAATTTAAA+CGG	0.385881	2.2:-3040748	None:intergenic
GACACCGTTGCCGTTGGTCA+TGG	0.391670	2.2:-3039995	None:intergenic
GTTGCCGTTGGTCATGGGTT+TGG	0.392896	2.2:-3039989	None:intergenic
TGGAGGAGGAGGTGAGGTTG+AGG	0.394091	2.2:-3040284	None:intergenic
TGAGTTGAGGGTGGAGGAGG+AGG	0.397719	2.2:-3040295	None:intergenic
GGTGCAGCAGCAACGGCGGC+GGG	0.411032	2.2:-3040133	None:intergenic
GTTGGTCATGGGTTTGGCGG+CGG	0.419990	2.2:-3039983	None:intergenic
TACAAAAGTGAAGGCTAAAG+TGG	0.436063	2.2:+3040578	MS.gene051940:CDS
TTGATGTTAGGTTTAAGATC+TGG	0.438319	2.2:+3040718	MS.gene051940:CDS
CCTTCTCCTCCTCGGCGTAA+CGG	0.438746	2.2:+3040191	MS.gene051940:CDS
TGAGGGTGGAGGAGGAGGTG+AGG	0.440148	2.2:-3040290	None:intergenic
TTAAGTGTGATGTTGATGTT+AGG	0.446188	2.2:+3040706	MS.gene051940:CDS
GGAAAGTTTGAGAGATGTTA+CGG	0.447386	2.2:-3040259	None:intergenic
ACACCGTTGCCGTTGGTCAT+GGG	0.448685	2.2:-3039994	None:intergenic
GGAGGAGGTGAGGTTGAGGT+AGG	0.450411	2.2:-3040280	None:intergenic
GAAGGAGGATGAGAAGTATG+AGG	0.450998	2.2:-3040173	None:intergenic
TTTAGCGTTGAAAGTGAAGT+TGG	0.454211	2.2:+3040554	MS.gene051940:CDS
TGAGGTTGTGGACGGTAGGT+AGG	0.457022	2.2:-3040099	None:intergenic
AACGGCGGCGGGTACGGCGG+TGG	0.458183	2.2:-3040122	None:intergenic
GTACGGCGGTGGTGAGGTTG+TGG	0.465045	2.2:-3040111	None:intergenic
GTAACTCTTATTCCAACGTT+AGG	0.471241	2.2:-3040615	None:intergenic
GGCTGGAAATGATGGGTTTG+CGG	0.475941	2.2:-3040046	None:intergenic
AGGTGCAGCAGCAACGGCGG+CGG	0.477876	2.2:-3040134	None:intergenic
AGAAGAAGGTGCAGCAGCAA+CGG	0.479402	2.2:-3040140	None:intergenic
TTAGGTTTAAGATCTGGAAA+TGG	0.481195	2.2:+3040724	MS.gene051940:CDS
TTCTTGCCATGTGTGAAAGT+TGG	0.485690	2.2:-3040432	None:intergenic
GAGAGAATTGTGATGGTGGT+TGG	0.496275	2.2:-3040378	None:intergenic
CTCATCCTCCTTCTCCTCCT+CGG	0.497763	2.2:+3040183	MS.gene051940:CDS
GCCGTTGGTCATGGGTTTGG+CGG	0.502360	2.2:-3039986	None:intergenic
GAGGTTGTGGACGGTAGGTA+GGG	0.503122	2.2:-3040098	None:intergenic
TTTGAGAGATGTTACGGTGA+AGG	0.503461	2.2:-3040253	None:intergenic
CCGTTACGCCGAGGAGGAGA+AGG	0.513542	2.2:-3040191	None:intergenic
ACTGGTTTCTTATTACCGAC+AGG	0.516093	2.2:-3040663	None:intergenic
GTTTGAGAGAATTGTGATGG+TGG	0.523617	2.2:-3040382	None:intergenic
TTGTGGACGGTAGGTAGGGC+GGG	0.525214	2.2:-3040094	None:intergenic
AGCAACGGCGGCGGGTACGG+CGG	0.526300	2.2:-3040125	None:intergenic
CGGCGGGTACGGCGGTGGTG+AGG	0.527713	2.2:-3040117	None:intergenic
GCCATGTGTGAAAGTTGGTA+TGG	0.529809	2.2:-3040427	None:intergenic
GTTGTGGACGGTAGGTAGGG+CGG	0.531506	2.2:-3040095	None:intergenic
GCCACAAAAGCTCAACTCTA+CGG	0.539658	2.2:+3040066	MS.gene051940:CDS
GTGGTGAGGTTGTGGACGGT+AGG	0.539763	2.2:-3040103	None:intergenic
GTTGTTTGAGAGAATTGTGA+TGG	0.543870	2.2:-3040385	None:intergenic
TACGGTGAAGGAAGGACGGT+GGG	0.551852	2.2:-3040241	None:intergenic
TGAAGGAAGGACGGTGGGGA+CGG	0.553633	2.2:-3040236	None:intergenic
AACGGTGTCACCAACGGTAA+CGG	0.557429	2.2:+3040009	MS.gene051940:CDS
AGAGATGTTACGGTGAAGGA+AGG	0.565773	2.2:-3040249	None:intergenic
GTCACCAACGGTAACGGTAA+CGG	0.571662	2.2:+3040015	MS.gene051940:CDS
GTTGGTGACACCGTTGCCGT+TGG	0.575232	2.2:-3040001	None:intergenic
GACGGTGGGGACGGTAGATG+AGG	0.578731	2.2:-3040227	None:intergenic
AACGGCAACGGTGTCACCAA+CGG	0.582278	2.2:+3040003	MS.gene051940:CDS
AGAAGGTGCAGCAGCAACGG+CGG	0.583077	2.2:-3040137	None:intergenic
GAAGTTGGATACAAAAGTGA+AGG	0.584664	2.2:+3040569	MS.gene051940:CDS
ATTAGAATCAGACGCTTCCA+CGG	0.587238	2.2:+3040500	MS.gene051940:CDS
GAATTGTGATGGTGGTTGGT+TGG	0.587560	2.2:-3040374	None:intergenic
CATGTTCTTCTTCAGCTCCG+TGG	0.589253	2.2:-3040517	None:intergenic
GTTAGAGTTCATGTTCCTGT+CGG	0.590463	2.2:+3040648	MS.gene051940:CDS
AAACCCATGACCAACGGCAA+CGG	0.592031	2.2:+3039991	MS.gene051940:CDS
GAGGAAGAACCAGAAGAAGA+AGG	0.593450	2.2:-3040154	None:intergenic
AACAACATCAACATCGGTGA+AGG	0.594037	2.2:+3040402	MS.gene051940:CDS
GCCGCCAAACCCATGACCAA+CGG	0.597855	2.2:+3039985	MS.gene051940:CDS
AAAATGAAAACACCTAACGT+TGG	0.600696	2.2:+3040603	MS.gene051940:CDS
TGGACGGTAGGTAGGGCGGG+TGG	0.609236	2.2:-3040091	None:intergenic
ACAAAAGTGAAGGCTAAAGT+GGG	0.615350	2.2:+3040579	MS.gene051940:CDS
CTCTCAAACAACATCAACAT+CGG	0.615638	2.2:+3040396	MS.gene051940:CDS
GACACCGTTACCGTTACCGT+TGG	0.628131	2.2:-3040019	None:intergenic
GGAATAAGAGTTACATGTGA+CGG	0.629815	2.2:+3040624	MS.gene051940:CDS
TTACGCCGAGGAGGAGAAGG+AGG	0.630487	2.2:-3040188	None:intergenic
GGCGGTGGTGAGGTTGTGGA+CGG	0.633011	2.2:-3040107	None:intergenic
TGGAAATGATGGGTTTGCGG+CGG	0.637844	2.2:-3040043	None:intergenic
ACCATACCAACTTTCACACA+TGG	0.645797	2.2:+3040426	MS.gene051940:CDS
CGGTGCCCGTTACGCCGAGG+AGG	0.646188	2.2:-3040197	None:intergenic
ATGTTACGGTGAAGGAAGGA+CGG	0.655102	2.2:-3040245	None:intergenic
TTACGGTGAAGGAAGGACGG+TGG	0.673058	2.2:-3040242	None:intergenic
CGGTAATAAGAAACCAGTAA+CGG	0.676522	2.2:+3040668	MS.gene051940:CDS
AAGCGGTGCCCGTTACGCCG+AGG	0.677693	2.2:-3040200	None:intergenic
ACGGTAGATGAGGTAGAAAG+CGG	0.681553	2.2:-3040217	None:intergenic
GGTGGTTGGTTGGTAAACGA+AGG	0.694931	2.2:-3040364	None:intergenic
ACGGTGAAGGAAGGACGGTG+GGG	0.703670	2.2:-3040240	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	AAAATGAAAACACCTAACGT+TGG	+	chr2.2:3040603-3040622	MS.gene051940:CDS	30.0%
	AAGAACATGAAGAGCAAAAA+CGG	+	chr2.2:3040531-3040550	MS.gene051940:CDS	30.0%
	TTAAGTGTGATGTTGATGTT+AGG	+	chr2.2:3040706-3040725	MS.gene051940:CDS	30.0%
!	TTAGGTTTAAGATCTGGAAA+TGG	+	chr2.2:3040724-3040743	MS.gene051940:CDS	30.0%
!	TTGATGTTAGGTTTAAGATC+TGG	+	chr2.2:3040718-3040737	MS.gene051940:CDS	30.0%
!!	AAATCTTCCATTTTGAGTAC+TGG	+	chr2.2:3040471-3040490	MS.gene051940:CDS	30.0%
	ACAAAAGTGAAGGCTAAAGT+GGG	+	chr2.2:3040579-3040598	MS.gene051940:CDS	35.0%
	ACGAAGGTGATATGTTTGTT+AGG	-	chr2.2:3040351-3040370	None:intergenic	35.0%
	CGGTAATAAGAAACCAGTAA+CGG	+	chr2.2:3040668-3040687	MS.gene051940:CDS	35.0%
	CTCTCAAACAACATCAACAT+CGG	+	chr2.2:3040396-3040415	MS.gene051940:CDS	35.0%
	GAAGTTGGATACAAAAGTGA+AGG	+	chr2.2:3040569-3040588	MS.gene051940:CDS	35.0%
	GGAAAGTTTGAGAGATGTTA+CGG	-	chr2.2:3040262-3040281	None:intergenic	35.0%
	GGAATAAGAGTTACATGTGA+CGG	+	chr2.2:3040624-3040643	MS.gene051940:CDS	35.0%
	GTAACTCTTATTCCAACGTT+AGG	-	chr2.2:3040618-3040637	None:intergenic	35.0%
	GTTGTTTGAGAGAATTGTGA+TGG	-	chr2.2:3040388-3040407	None:intergenic	35.0%
	TACAAAAGTGAAGGCTAAAG+TGG	+	chr2.2:3040578-3040597	MS.gene051940:CDS	35.0%
!	CGAAGGTGATATGTTTGTTA+GGG	-	chr2.2:3040350-3040369	None:intergenic	35.0%
!	TTTAGCGTTGAAAGTGAAGT+TGG	+	chr2.2:3040554-3040573	MS.gene051940:CDS	35.0%
!!!	GACGTTGAATTTTGAGTTGA+GGG	-	chr2.2:3040310-3040329	None:intergenic	35.0%
!!!	TGACGTTGAATTTTGAGTTG+AGG	-	chr2.2:3040311-3040330	None:intergenic	35.0%
	AACAACATCAACATCGGTGA+AGG	+	chr2.2:3040402-3040421	MS.gene051940:CDS	40.0%
	ACCATACCAACTTTCACACA+TGG	+	chr2.2:3040426-3040445	MS.gene051940:CDS	40.0%
	ATTAGAATCAGACGCTTCCA+CGG	+	chr2.2:3040500-3040519	MS.gene051940:CDS	40.0%
	GTTAGAGTTCATGTTCCTGT+CGG	+	chr2.2:3040648-3040667	MS.gene051940:CDS	40.0%
	GTTTGAGAGAATTGTGATGG+TGG	-	chr2.2:3040385-3040404	None:intergenic	40.0%
	TGCTTGACCAGTACTCAAAA+TGG	-	chr2.2:3040481-3040500	None:intergenic	40.0%
	TTCTTGCCATGTGTGAAAGT+TGG	-	chr2.2:3040435-3040454	None:intergenic	40.0%
	TTTGAGAGATGTTACGGTGA+AGG	-	chr2.2:3040256-3040275	None:intergenic	40.0%
!	ACTGGTTTCTTATTACCGAC+AGG	-	chr2.2:3040666-3040685	None:intergenic	40.0%
!	CTTTTGTGGCTGGAAATGAT+GGG	-	chr2.2:3040056-3040075	None:intergenic	40.0%
!!!	GTTGAATTTTGAGTTGAGGG+TGG	-	chr2.2:3040307-3040326	None:intergenic	40.0%
	ACGGTAGATGAGGTAGAAAG+CGG	-	chr2.2:3040220-3040239	None:intergenic	45.0%
	AGAGATGTTACGGTGAAGGA+AGG	-	chr2.2:3040252-3040271	None:intergenic	45.0%
	ATGTTACGGTGAAGGAAGGA+CGG	-	chr2.2:3040248-3040267	None:intergenic	45.0%
	GAGGAAGAACCAGAAGAAGA+AGG	-	chr2.2:3040157-3040176	None:intergenic	45.0%
	GCCACAAAAGCTCAACTCTA+CGG	+	chr2.2:3040066-3040085	MS.gene051940:CDS	45.0%
!	ACCGTAGAGTTGAGCTTTTG+TGG	-	chr2.2:3040070-3040089	None:intergenic	45.0%
!	GAAGGAGGATGAGAAGTATG+AGG	-	chr2.2:3040176-3040195	None:intergenic	45.0%
!	GCTTTTGTGGCTGGAAATGA+TGG	-	chr2.2:3040057-3040076	None:intergenic	45.0%
!	TAGAGTTGAGCTTTTGTGGC+TGG	-	chr2.2:3040066-3040085	None:intergenic	45.0%
!!	GAATTGTGATGGTGGTTGGT+TGG	-	chr2.2:3040377-3040396	None:intergenic	45.0%
!!	GAGAGAATTGTGATGGTGGT+TGG	-	chr2.2:3040381-3040400	None:intergenic	45.0%
!!	GCCATGTGTGAAAGTTGGTA+TGG	-	chr2.2:3040430-3040449	None:intergenic	45.0%
!!!	GAATTTTGAGTTGAGGGTGG+AGG	-	chr2.2:3040304-3040323	None:intergenic	45.0%
	AAACCCATGACCAACGGCAA+CGG	+	chr2.2:3039991-3040010	MS.gene051940:CDS	50.0%
	CATGTTCTTCTTCAGCTCCG+TGG	-	chr2.2:3040520-3040539	None:intergenic	50.0%
	TTCGAAGTTGACGCCGTTAC+TGG	-	chr2.2:3040684-3040703	None:intergenic	50.0%
!	AGAAGAAGGTGCAGCAGCAA+CGG	-	chr2.2:3040143-3040162	None:intergenic	50.0%
!	GTCACCAACGGTAACGGTAA+CGG	+	chr2.2:3040015-3040034	MS.gene051940:CDS	50.0%
!!	AACGGTGTCACCAACGGTAA+CGG	+	chr2.2:3040009-3040028	MS.gene051940:CDS	50.0%
!!	GGCTGGAAATGATGGGTTTG+CGG	-	chr2.2:3040049-3040068	None:intergenic	50.0%
!!	GGTGGTTGGTTGGTAAACGA+AGG	-	chr2.2:3040367-3040386	None:intergenic	50.0%
!!	TGGAAATGATGGGTTTGCGG+CGG	-	chr2.2:3040046-3040065	None:intergenic	50.0%
!!!	TTTTGAGTTGAGGGTGGAGG+AGG	-	chr2.2:3040301-3040320	None:intergenic	50.0%
	ACACCGTTGCCGTTGGTCAT+GGG	-	chr2.2:3039997-3040016	None:intergenic	55.0%
	CTCATCCTCCTTCTCCTCCT+CGG	+	chr2.2:3040183-3040202	MS.gene051940:CDS	55.0%
	GACACCGTTACCGTTACCGT+TGG	-	chr2.2:3040022-3040041	None:intergenic	55.0%
	GAGGTTGTGGACGGTAGGTA+GGG	-	chr2.2:3040101-3040120	None:intergenic	55.0%
	GCTGCTGCACCTTCTTCTTC+TGG	+	chr2.2:3040145-3040164	MS.gene051940:CDS	55.0%
	GTTGCCGTTGGTCATGGGTT+TGG	-	chr2.2:3039992-3040011	None:intergenic	55.0%
	TACGGTGAAGGAAGGACGGT+GGG	-	chr2.2:3040244-3040263	None:intergenic	55.0%
	TGAGGTTGTGGACGGTAGGT+AGG	-	chr2.2:3040102-3040121	None:intergenic	55.0%
	TTACGGTGAAGGAAGGACGG+TGG	-	chr2.2:3040245-3040264	None:intergenic	55.0%
!!	AACGGCAACGGTGTCACCAA+CGG	+	chr2.2:3040003-3040022	MS.gene051940:CDS	55.0%
	ACGGTGAAGGAAGGACGGTG+GGG	-	chr2.2:3040243-3040262	None:intergenic	60.0%
	CCTTCTCCTCCTCGGCGTAA+CGG	+	chr2.2:3040191-3040210	MS.gene051940:CDS	60.0%
	CTTCTCCTCCTCGGCGTAAC+GGG	+	chr2.2:3040192-3040211	MS.gene051940:CDS	60.0%
	GACACCGTTGCCGTTGGTCA+TGG	-	chr2.2:3039998-3040017	None:intergenic	60.0%
	GCCGCCAAACCCATGACCAA+CGG	+	chr2.2:3039985-3040004	MS.gene051940:CDS	60.0%
	GCCGTTGGTCATGGGTTTGG+CGG	-	chr2.2:3039989-3040008	None:intergenic	60.0%
	GGAGGAGGTGAGGTTGAGGT+AGG	-	chr2.2:3040283-3040302	None:intergenic	60.0%
	GTGGTGAGGTTGTGGACGGT+AGG	-	chr2.2:3040106-3040125	None:intergenic	60.0%
	GTTGGTCATGGGTTTGGCGG+CGG	-	chr2.2:3039986-3040005	None:intergenic	60.0%
	GTTGTGGACGGTAGGTAGGG+CGG	-	chr2.2:3040098-3040117	None:intergenic	60.0%
	TGAAGGAAGGACGGTGGGGA+CGG	-	chr2.2:3040239-3040258	None:intergenic	60.0%
	TGGAGGAGGAGGTGAGGTTG+AGG	-	chr2.2:3040287-3040306	None:intergenic	60.0%
	TTACGCCGAGGAGGAGAAGG+AGG	-	chr2.2:3040191-3040210	None:intergenic	60.0%
	TTGGTCATGGGTTTGGCGGC+GGG	-	chr2.2:3039985-3040004	None:intergenic	60.0%
	TTGTGGACGGTAGGTAGGGC+GGG	-	chr2.2:3040097-3040116	None:intergenic	60.0%
!	AGAAGGTGCAGCAGCAACGG+CGG	-	chr2.2:3040140-3040159	None:intergenic	60.0%
!	TGAGTTGAGGGTGGAGGAGG+AGG	-	chr2.2:3040298-3040317	None:intergenic	60.0%
!!	GTTGGTGACACCGTTGCCGT+TGG	-	chr2.2:3040004-3040023	None:intergenic	60.0%
	CCGTTACGCCGAGGAGGAGA+AGG	-	chr2.2:3040194-3040213	None:intergenic	65.0%
	GACGGTGGGGACGGTAGATG+AGG	-	chr2.2:3040230-3040249	None:intergenic	65.0%
	GGCGGTGGTGAGGTTGTGGA+CGG	-	chr2.2:3040110-3040129	None:intergenic	65.0%
	GTACGGCGGTGGTGAGGTTG+TGG	-	chr2.2:3040114-3040133	None:intergenic	65.0%
	TGAGGGTGGAGGAGGAGGTG+AGG	-	chr2.2:3040293-3040312	None:intergenic	65.0%
	AAGCGGTGCCCGTTACGCCG+AGG	-	chr2.2:3040203-3040222	None:intergenic	70.0%
	AGCAGCAACGGCGGCGGGTA+CGG	-	chr2.2:3040131-3040150	None:intergenic	70.0%
	AGGTGCAGCAGCAACGGCGG+CGG	-	chr2.2:3040137-3040156	None:intergenic	70.0%
	TGGACGGTAGGTAGGGCGGG+TGG	-	chr2.2:3040094-3040113	None:intergenic	70.0%
	AGCAACGGCGGCGGGTACGG+CGG	-	chr2.2:3040128-3040147	None:intergenic	75.0%
	CGGTGCCCGTTACGCCGAGG+AGG	-	chr2.2:3040200-3040219	None:intergenic	75.0%
	GGTGCAGCAGCAACGGCGGC+GGG	-	chr2.2:3040136-3040155	None:intergenic	75.0%
!	AACGGCGGCGGGTACGGCGG+TGG	-	chr2.2:3040125-3040144	None:intergenic	80.0%
!	CGGCGGGTACGGCGGTGGTG+AGG	-	chr2.2:3040120-3040139	None:intergenic	80.0%

Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	3039964	3040755	3039964	ID=MS.gene051940
chr2.2	mRNA	3039964	3040755	3039964	ID=MS.gene051940.t1;Parent=MS.gene051940
chr2.2	exon	3039964	3040755	3039964	ID=MS.gene051940.t1.exon1;Parent=MS.gene051940.t1
chr2.2	CDS	3039964	3040755	3039964	ID=cds.MS.gene051940.t1;Parent=MS.gene051940.t1

Gene Sequence

>MS.gene051940

ATGGCAGATCGTGTATATCCCGCCGCCAAACCCATGACCAACGGCAACGGTGTCACCAACGGTAACGGTAACGGTGTCTCCGCCGCAAACCCATCATTTCCAGCCACAAAAGCTCAACTCTACGGTGCCACCCGCCCTACCTACCGTCCACAACCTCACCACCGCCGTACCCGCCGCCGTTGCTGCTGCACCTTCTTCTTCTGGTTCTTCCTCATACTTCTCATCCTCCTTCTCCTCCTCGGCGTAACGGGCACCGCTTTCTACCTCATCTACCGTCCCCACCGTCCTTCCTTCACCGTAACATCTCTCAAACTTTCCTACCTCAACCTCACCTCCTCCTCCACCCTCAACTCAAAATTCAACGTCAACATCACTGCAAAAAACCCTAACAAACATATCACCTTCGTTTACCAACCAACCACCATCACAATTCTCTCAAACAACATCAACATCGGTGAAGGAACCATACCAACTTTCACACATGGCAAGAAGAACACTACTCTTCTAAAATCTTCCATTTTGAGTACTGGTCAAGCATTAGAATCAGACGCTTCCACGGAGCTGAAGAAGAACATGAAGAGCAAAAACGGTTTAGCGTTGAAAGTGAAGTTGGATACAAAAGTGAAGGCTAAAGTGGGAAAAATGAAAACACCTAACGTTGGAATAAGAGTTACATGTGACGGTGTTAGAGTTCATGTTCCTGTCGGTAATAAGAAACCAGTAACGGCGTCAACTTCGAACGTTAAGTGTGATGTTGATGTTAGGTTTAAGATCTGGAAATGGACCGTTTAA

Protein sequence

>MS.gene051940.t1

MADRVYPAAKPMTNGNGVTNGNGNGVSAANPSFPATKAQLYGATRPTYRPQPHHRRTRRRCCCTFFFWFFLILLILLLLLGVTGTAFYLIYRPHRPSFTVTSLKLSYLNLTSSSTLNSKFNVNITAKNPNKHITFVYQPTTITILSNNINIGEGTIPTFTHGKKNTTLLKSSILSTGQALESDASTELKKNMKSKNGLALKVKLDTKVKAKVGKMKTPNVGIRVTCDGVRVHVPVGNKKPVTASTSNVKCDVDVRFKIWKWTV