Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35047.t1 | XP_013457224.1 | 99.4 | 482 | 3 | 0 | 1 | 482 | 1 | 482 | 3.50E-289 | 1003.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35047.t1 | Q6NS23 | 39.2 | 449 | 235 | 9 | 3 | 438 | 14 | 437 | 1.1e-86 | 322.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35047.t1 | A0A072UZG5 | 99.4 | 482 | 3 | 0 | 1 | 482 | 1 | 482 | 2.5e-289 | 1003.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051329 | MS.gene35047 | 0.944581 | 1.50E-103 | -1.69E-46 |
| MS.gene056257 | MS.gene35047 | 0.80324 | 3.83E-49 | -1.69E-46 |
| MS.gene058030 | MS.gene35047 | 0.811661 | 6.26E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35047.t1 | MTR_4g094315 | 99.378 | 482 | 3 | 0 | 1 | 482 | 1 | 482 | 0.0 | 993 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35047.t1 | AT3G26410 | 73.651 | 482 | 122 | 2 | 1 | 482 | 1 | 477 | 0.0 | 752 |
Find 136 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGCAACACCTTGAATTTA+AGG | 0.147556 | 4.4:+20557447 | MS.gene35047:CDS |
| TGGAATCTAACAGCACTTTC+AGG | 0.261458 | 4.4:+20554217 | MS.gene35047:CDS |
| ATCAAAAGCTCCAAACAATT+TGG | 0.282090 | 4.4:-20553697 | None:intergenic |
| GAATGGCGATTATAAGATTA+AGG | 0.285901 | 4.4:+20557546 | MS.gene35047:CDS |
| CTTGTTGCAGCAGCTCATTT+TGG | 0.299821 | 4.4:+20555619 | MS.gene35047:CDS |
| TCCAGTGGATGCTCAGTTAA+AGG | 0.304687 | 4.4:+20557522 | MS.gene35047:CDS |
| AGGATTACTGTTGATACCTT+TGG | 0.304749 | 4.4:+20554237 | MS.gene35047:CDS |
| CTCTTTCAGCCCCGGACGCC+AGG | 0.306574 | 4.4:-20556117 | None:intergenic |
| GGGGATGAACGTCGTCGTTT+TGG | 0.306689 | 4.4:-20553725 | None:intergenic |
| ACCAAATGGAAAGGAGAATC+TGG | 0.336337 | 4.4:-20553780 | None:intergenic |
| TTGGCTAAAGATTCGACTTC+GGG | 0.336501 | 4.4:-20553678 | None:intergenic |
| TTGAAAAGCCGTACTTATCT+TGG | 0.337225 | 4.4:+20555493 | MS.gene35047:CDS |
| ATAATATGTGACCCTCCTTA+TGG | 0.341218 | 4.4:+20557064 | MS.gene35047:CDS |
| AGCTTAAAACATGGATGCTC+CGG | 0.349016 | 4.4:-20557322 | None:intergenic |
| AACCTTCCTCCCTGGCGTCC+GGG | 0.349511 | 4.4:+20556107 | MS.gene35047:CDS |
| TTCTTAGTTCACGATATTGC+AGG | 0.351630 | 4.4:+20557365 | MS.gene35047:CDS |
| CAACCTTCCTCCCTGGCGTC+CGG | 0.354356 | 4.4:+20556106 | MS.gene35047:CDS |
| CCCAGATTCTCCTTTCCATT+TGG | 0.355570 | 4.4:+20553779 | MS.gene35047:CDS |
| GAAAACCAGAGCACAACTTC+TGG | 0.364397 | 4.4:+20555353 | MS.gene35047:CDS |
| CATCTTCTAGCCACTTTACA+TGG | 0.364435 | 4.4:-20557474 | None:intergenic |
| CATGGTTCTCCTTAAATTCA+AGG | 0.367959 | 4.4:-20557456 | None:intergenic |
| GAATCTTTAGCCAAATTGTT+TGG | 0.372629 | 4.4:+20553687 | MS.gene35047:CDS |
| AGGGTGCTGACATTGACATT+AGG | 0.374088 | 4.4:+20555817 | MS.gene35047:intron |
| TATGGCAACTTTCTCTCATC+TGG | 0.376539 | 4.4:-20554192 | None:intergenic |
| CGAGCCGGAGGACGCAAATC+TGG | 0.377832 | 4.4:+20557091 | MS.gene35047:CDS |
| GGGTGCTGACATTGACATTA+GGG | 0.379288 | 4.4:+20555818 | MS.gene35047:intron |
| TAAAATTACTCCAAACATTA+CGG | 0.379933 | 4.4:-20555866 | None:intergenic |
| GCTGCCAAGATGCTTGTATT+GGG | 0.380400 | 4.4:+20557238 | MS.gene35047:CDS |
| TGCTGCCAAGATGCTTGTAT+TGG | 0.383669 | 4.4:+20557237 | MS.gene35047:CDS |
| GTGCTGTTAGATTCCAAGTA+TGG | 0.387116 | 4.4:-20554210 | None:intergenic |
| GGATTACTGTTGATACCTTT+GGG | 0.387647 | 4.4:+20554238 | MS.gene35047:CDS |
| GATAATTGTGAAGGTAATAA+TGG | 0.389973 | 4.4:+20555388 | MS.gene35047:CDS |
| GAGGGAGCTTCCATTGCAAC+TGG | 0.392144 | 4.4:-20553746 | None:intergenic |
| TTACACAGAGGAAATAAGTT+TGG | 0.394825 | 4.4:+20557417 | MS.gene35047:CDS |
| TTGTCGTCCGGAACAATGTA+AGG | 0.408258 | 4.4:-20557145 | None:intergenic |
| TGTGGAGCCTTACATTGTTC+CGG | 0.409333 | 4.4:+20557138 | MS.gene35047:CDS |
| TGTATGAGCTATGGGGTGAA+GGG | 0.410913 | 4.4:+20554130 | MS.gene35047:CDS |
| AAACTTATTTCCTCTGTGTA+AGG | 0.415891 | 4.4:-20557415 | None:intergenic |
| GTCTCCACATAATCATTTCC+CGG | 0.424080 | 4.4:+20557303 | MS.gene35047:CDS |
| TGCTGCAACAAGAATACTTC+CGG | 0.424884 | 4.4:-20555608 | None:intergenic |
| CAACCAAGCACTGGCTACTC+CGG | 0.428014 | 4.4:+20555555 | MS.gene35047:CDS |
| ATACTTCCGGTTCCAACAAA+AGG | 0.429546 | 4.4:-20555595 | None:intergenic |
| GCGGTCCTGACCGTAATGTT+TGG | 0.431493 | 4.4:+20555856 | MS.gene35047:CDS |
| AGGAAATAAGTTTGGCAGCT+AGG | 0.434880 | 4.4:+20557425 | MS.gene35047:CDS |
| ATGTATGAGCTATGGGGTGA+AGG | 0.439043 | 4.4:+20554129 | MS.gene35047:CDS |
| GTTTACTTATATCCCTTTCA+AGG | 0.440303 | 4.4:+20554302 | MS.gene35047:CDS |
| GGTGGTAGGAAGCTACTAAA+GGG | 0.441482 | 4.4:+20557112 | MS.gene35047:CDS |
| AACCAAGCACTGGCTACTCC+GGG | 0.444181 | 4.4:+20555556 | MS.gene35047:CDS |
| TCCTTTAACTGAGCATCCAC+TGG | 0.446225 | 4.4:-20557523 | None:intergenic |
| TGAGAGAAAGTTGCCATACT+TGG | 0.448763 | 4.4:+20554197 | MS.gene35047:CDS |
| CTGAAGGGAGATTGACCAAA+TGG | 0.448856 | 4.4:-20553794 | None:intergenic |
| GAATGAGTTCCTTATGCTCC+TGG | 0.450036 | 4.4:-20554275 | None:intergenic |
| GTGAAGTTGGTGCTGCTGAT+AGG | 0.451208 | 4.4:+20555449 | MS.gene35047:CDS |
| GGGTAGCTATGAGGAGTTGA+AGG | 0.451262 | 4.4:+20554152 | MS.gene35047:CDS |
| ATCAGCCAGAAGTTGTGCTC+TGG | 0.451410 | 4.4:-20555358 | None:intergenic |
| TGGGAAGGTTATTAGTCTCC+AGG | 0.454971 | 4.4:+20554257 | MS.gene35047:CDS |
| TCCCCGGAGTAGCCAGTGCT+TGG | 0.456610 | 4.4:-20555558 | None:intergenic |
| GACTCTTCTTCTCTCAATAC+AGG | 0.466540 | 4.4:-20557283 | None:intergenic |
| TGAAAAGCCGTACTTATCTT+GGG | 0.468843 | 4.4:+20555494 | MS.gene35047:CDS |
| ACCTTCCTCCCTGGCGTCCG+GGG | 0.473468 | 4.4:+20556108 | MS.gene35047:CDS |
| CCTCCGGCTCGCACTCCATA+AGG | 0.474138 | 4.4:-20557079 | None:intergenic |
| TATTAGTCTCCAGGAGCATA+AGG | 0.475181 | 4.4:+20554266 | MS.gene35047:CDS |
| AAGGAGAATCTGGGTGATGA+TGG | 0.479452 | 4.4:-20553770 | None:intergenic |
| TCAGCCCTTAAAAGACCAAC+TGG | 0.494342 | 4.4:-20556080 | None:intergenic |
| TTACTGACAATGGTTAAGAT+AGG | 0.494959 | 4.4:+20557391 | MS.gene35047:CDS |
| AAAGGACACACAACCTTGAA+AGG | 0.497686 | 4.4:-20554315 | None:intergenic |
| TGGTGGTAGGAAGCTACTAA+AGG | 0.498563 | 4.4:+20557111 | MS.gene35047:CDS |
| CTGGCGTCCGGGGCTGAAAG+AGG | 0.505882 | 4.4:+20556118 | MS.gene35047:CDS |
| GATTCAAACAAGAAATATAG+AGG | 0.507958 | 4.4:+20557568 | MS.gene35047:CDS |
| CGGAGTAGCCAGTGCTTGGT+TGG | 0.508374 | 4.4:-20555554 | None:intergenic |
| TTACGAGCAATTTCTTCTGA+AGG | 0.511567 | 4.4:-20553810 | None:intergenic |
| ACCACCAGATTTGCGTCCTC+CGG | 0.513118 | 4.4:-20557095 | None:intergenic |
| GCCCCGGACGCCAGGGAGGA+AGG | 0.514958 | 4.4:-20556109 | None:intergenic |
| TCTAATGGCCAACCAAGCAC+TGG | 0.516528 | 4.4:+20555546 | MS.gene35047:CDS |
| TCCGCCCAATACAAGCATCT+TGG | 0.517479 | 4.4:-20557242 | None:intergenic |
| GAGCATAAGGAACTCATTCA+AGG | 0.518919 | 4.4:+20554279 | MS.gene35047:CDS |
| CATGTAAAGTGGCTAGAAGA+TGG | 0.524567 | 4.4:+20557475 | MS.gene35047:CDS |
| TACTGTTGATACCTTTGGGA+AGG | 0.526326 | 4.4:+20554242 | MS.gene35047:CDS |
| TACGAGCAATTTCTTCTGAA+GGG | 0.530624 | 4.4:-20553809 | None:intergenic |
| CCGGCTCGCACTCCATAAGG+AGG | 0.532511 | 4.4:-20557076 | None:intergenic |
| CCTCCTTATGGAGTGCGAGC+CGG | 0.533732 | 4.4:+20557076 | MS.gene35047:CDS |
| TCTTTCAGCCCCGGACGCCA+GGG | 0.533800 | 4.4:-20556116 | None:intergenic |
| GAAGGGAATGTATGAGCTAT+GGG | 0.534827 | 4.4:+20554122 | MS.gene35047:CDS |
| TTATCTTGGGCCAACAGCCA+TGG | 0.536034 | 4.4:+20555507 | MS.gene35047:CDS |
| ATCTCCGCATCCATGGCTGT+TGG | 0.537799 | 4.4:-20555517 | None:intergenic |
| GGGTCATAAACTAGTTTCCC+CGG | 0.538697 | 4.4:-20555574 | None:intergenic |
| TACTTCCGGTTCCAACAAAA+GGG | 0.538775 | 4.4:-20555594 | None:intergenic |
| GTATATGTTGCAGTATGGAT+TGG | 0.538931 | 4.4:+20556052 | MS.gene35047:intron |
| ACACACTCAACTAAACTGTA+AGG | 0.540832 | 4.4:-20557196 | None:intergenic |
| GAATCTGGGTGATGATGGAG+AGG | 0.548209 | 4.4:-20553765 | None:intergenic |
| GATGCTCAGTTAAAGGAGAA+TGG | 0.551488 | 4.4:+20557529 | MS.gene35047:CDS |
| AAATTTACCTCTTTCAGCCC+CGG | 0.552977 | 4.4:-20556125 | None:intergenic |
| AAGGACACACAACCTTGAAA+GGG | 0.553121 | 4.4:-20554314 | None:intergenic |
| TGAAGGGAATGTATGAGCTA+TGG | 0.553852 | 4.4:+20554121 | MS.gene35047:CDS |
| TTTGGCTAAAGATTCGACTT+CGG | 0.554968 | 4.4:-20553679 | None:intergenic |
| TTATGTAGGTATACTTGTGA+AGG | 0.555230 | 4.4:+20554104 | MS.gene35047:intron |
| ACGTTCATCCCCAGTTGCAA+TGG | 0.557926 | 4.4:+20553736 | MS.gene35047:CDS |
| GTATGAGCTATGGGGTGAAG+GGG | 0.562156 | 4.4:+20554131 | MS.gene35047:CDS |
| GCTTAAAACATGGATGCTCC+GGG | 0.564471 | 4.4:-20557321 | None:intergenic |
| CTGACAACAACCTTCCTCCC+TGG | 0.564474 | 4.4:+20556099 | MS.gene35047:CDS |
| TTACTCCAAACATTACGGTC+AGG | 0.565054 | 4.4:-20555861 | None:intergenic |
| TCTTAGTTCACGATATTGCA+GGG | 0.569214 | 4.4:+20557366 | MS.gene35047:CDS |
| AAAAGCTATCTCCGCATCCA+TGG | 0.574264 | 4.4:-20555524 | None:intergenic |
| TTAAGGAGAACCATGTAAAG+TGG | 0.575742 | 4.4:+20557464 | MS.gene35047:CDS |
| TGGGCCAACAGCCATGGATG+CGG | 0.579242 | 4.4:+20555513 | MS.gene35047:CDS |
| TATGAGCTATGGGGTGAAGG+GGG | 0.582219 | 4.4:+20554132 | MS.gene35047:CDS |
| CCAAATGGAAAGGAGAATCT+GGG | 0.583278 | 4.4:-20553779 | None:intergenic |
| AGGGAGCTTCCATTGCAACT+GGG | 0.585486 | 4.4:-20553745 | None:intergenic |
| ATAGAAATTGATAATTGTGA+AGG | 0.588940 | 4.4:+20555379 | MS.gene35047:CDS |
| GGGAGCTTCCATTGCAACTG+GGG | 0.597227 | 4.4:-20553744 | None:intergenic |
| CCTTATGGAGTGCGAGCCGG+AGG | 0.597901 | 4.4:+20557079 | MS.gene35047:CDS |
| AGCATAAGGAACTCATTCAA+GGG | 0.598978 | 4.4:+20554280 | MS.gene35047:CDS |
| TTGCAGGGTATTACTGACAA+TGG | 0.611706 | 4.4:+20557381 | MS.gene35047:CDS |
| GCCGGAGGACGCAAATCTGG+TGG | 0.617590 | 4.4:+20557094 | MS.gene35047:CDS |
| GAGGACGCAAATCTGGTGGT+AGG | 0.619730 | 4.4:+20557098 | MS.gene35047:CDS |
| TTCAGCCCCGGACGCCAGGG+AGG | 0.619819 | 4.4:-20556113 | None:intergenic |
| TGCTCCGGGAAATGATTATG+TGG | 0.620117 | 4.4:-20557307 | None:intergenic |
| TATGTAGGTATACTTGTGAA+GGG | 0.620517 | 4.4:+20554105 | MS.gene35047:intron |
| GACATTAGGGTAGTACGTGA+TGG | 0.622739 | 4.4:+20555831 | MS.gene35047:CDS |
| GGGAGATTGACCAAATGGAA+AGG | 0.626339 | 4.4:-20553789 | None:intergenic |
| AAACTGTAAGGTGCAGTCGA+TGG | 0.631902 | 4.4:-20557184 | None:intergenic |
| AGGGTAGTACGTGATGGACG+CGG | 0.642357 | 4.4:+20555837 | MS.gene35047:CDS |
| CGGCTCGCACTCCATAAGGA+GGG | 0.646260 | 4.4:-20557075 | None:intergenic |
| GAAGAAATCAGCTTAAAACA+TGG | 0.646843 | 4.4:-20557331 | None:intergenic |
| CTGTTGGCCCAAGATAAGTA+CGG | 0.648222 | 4.4:-20555501 | None:intergenic |
| TATGGATTGGAAATGCCAGT+TGG | 0.653758 | 4.4:+20556065 | MS.gene35047:CDS |
| AAGGTGCAGTCGATGGTATG+TGG | 0.664482 | 4.4:-20557177 | None:intergenic |
| GCCAAGATGCTTGTATTGGG+CGG | 0.667054 | 4.4:+20557241 | MS.gene35047:CDS |
| GTGGTAGGAAGCTACTAAAG+GGG | 0.679191 | 4.4:+20557113 | MS.gene35047:CDS |
| ACCAAGCACTGGCTACTCCG+GGG | 0.680846 | 4.4:+20555557 | MS.gene35047:CDS |
| GAGACTAATAACCTTCCCAA+AGG | 0.682399 | 4.4:-20554253 | None:intergenic |
| TGGTAGGAAGCTACTAAAGG+GGG | 0.688576 | 4.4:+20557114 | MS.gene35047:CDS |
| AATCTGGGTGATGATGGAGA+GGG | 0.697131 | 4.4:-20553764 | None:intergenic |
| GAAAACACATAGATACCACA+TGG | 0.722516 | 4.4:-20553628 | None:intergenic |
| AAGGGAATGTATGAGCTATG+GGG | 0.749415 | 4.4:+20554123 | MS.gene35047:CDS |
| TAAGATAGGTCCTTACACAG+AGG | 0.768257 | 4.4:+20557405 | MS.gene35047:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATGACAAATAATTAAA+GGG | - | chr4.4:20553911-20553930 | None:intergenic | 10.0% |
| !! | AATAGAAAATTATAAACAAT+AGG | - | chr4.4:20556688-20556707 | None:intergenic | 10.0% |
| !! | CAATAAATAAATCAAATTAA+AGG | - | chr4.4:20554336-20554355 | None:intergenic | 10.0% |
| !! | TAAAAATGACAAATAATTAA+AGG | - | chr4.4:20553912-20553931 | None:intergenic | 10.0% |
| !!! | AATTTTATTTTTTTTATGTG+GGG | + | chr4.4:20554075-20554094 | MS.gene35047:intron | 10.0% |
| !! | AAATTATAAACAATAGGATT+TGG | - | chr4.4:20556682-20556701 | None:intergenic | 15.0% |
| !!! | AAAGTTTCAATTTTTCATAA+TGG | + | chr4.4:20553979-20553998 | MS.gene35047:intron | 15.0% |
| !!! | AAATTTTTGATTTTTTTACG+TGG | + | chr4.4:20553948-20553967 | MS.gene35047:intron | 15.0% |
| !!! | AAGTTTATCATTTTTTATAG+TGG | + | chr4.4:20554010-20554029 | MS.gene35047:intron | 15.0% |
| !!! | AAGTTTCAATTTTTCATAAT+GGG | + | chr4.4:20553980-20553999 | MS.gene35047:intron | 15.0% |
| !!! | AATTTTTGATTTTTTTACGT+GGG | + | chr4.4:20553949-20553968 | MS.gene35047:intron | 15.0% |
| !!! | AGTTTATCATTTTTTATAGT+GGG | + | chr4.4:20554011-20554030 | MS.gene35047:intron | 15.0% |
| !!! | ATTTGATTTATTTATTGCAT+TGG | + | chr4.4:20554339-20554358 | MS.gene35047:intron | 15.0% |
| !!! | ATTTTTTCAATTAAGATAAC+AGG | + | chr4.4:20554813-20554832 | MS.gene35047:intron | 15.0% |
| !!! | GGTTGTTATTATATATATAA+TGG | + | chr4.4:20556834-20556853 | MS.gene35047:intron | 15.0% |
| !!! | TTTTTTCAATTAAGATAACA+GGG | + | chr4.4:20554814-20554833 | MS.gene35047:intron | 15.0% |
| !! | AAATGCAAAAATAACTTGAA+TGG | + | chr4.4:20556961-20556980 | MS.gene35047:intron | 20.0% |
| !! | AATTTACAAAGAAATGTACA+AGG | - | chr4.4:20556169-20556188 | None:intergenic | 20.0% |
| !! | AGAGAAAAAAGAAAAAGAAA+AGG | - | chr4.4:20555684-20555703 | None:intergenic | 20.0% |
| !! | ATACTTAATCTAAATTGTTC+AGG | + | chr4.4:20555797-20555816 | MS.gene35047:intron | 20.0% |
| !! | ATCTTTCTGATAAACTTATT+TGG | + | chr4.4:20556027-20556046 | MS.gene35047:intron | 20.0% |
| !! | TAAAATTACTCCAAACATTA+CGG | - | chr4.4:20555869-20555888 | None:intergenic | 20.0% |
| !! | TACTTAATCTAAATTGTTCA+GGG | + | chr4.4:20555798-20555817 | MS.gene35047:intron | 20.0% |
| !!! | AAAAAAGTACAATCAAACAA+AGG | - | chr4.4:20555075-20555094 | None:intergenic | 20.0% |
| !!! | AAAAAGTACAATCAAACAAA+GGG | - | chr4.4:20555074-20555093 | None:intergenic | 20.0% |
| !!! | AATATAATCAACATGTTTTG+TGG | + | chr4.4:20556302-20556321 | MS.gene35047:intron | 20.0% |
| !!! | ATAGAAATTGATAATTGTGA+AGG | + | chr4.4:20555379-20555398 | MS.gene35047:CDS | 20.0% |
| !!! | ATTTGTCATTTTTATTTCGT+GGG | + | chr4.4:20553918-20553937 | MS.gene35047:intron | 20.0% |
| !!! | CAAAACATGTTGATTATATT+CGG | - | chr4.4:20556302-20556321 | None:intergenic | 20.0% |
| !!! | TATTTGTCATTTTTATTTCG+TGG | + | chr4.4:20553917-20553936 | MS.gene35047:intron | 20.0% |
| !!! | TGATAACTTTGTTTTTTACA+AGG | + | chr4.4:20557030-20557049 | MS.gene35047:intron | 20.0% |
| !!! | TTTTTCAATTAAGATAACAG+GGG | + | chr4.4:20554815-20554834 | MS.gene35047:intron | 20.0% |
| ! | GATAATTGTGAAGGTAATAA+TGG | + | chr4.4:20555388-20555407 | MS.gene35047:CDS | 25.0% |
| ! | GATTCAAACAAGAAATATAG+AGG | + | chr4.4:20557568-20557587 | MS.gene35047:CDS | 25.0% |
| ! | GCATGATTAAAACTACATTA+TGG | + | chr4.4:20554615-20554634 | MS.gene35047:intron | 25.0% |
| ! | TACCTAACTGTAAAATTACT+AGG | - | chr4.4:20556437-20556456 | None:intergenic | 25.0% |
| ! | TATAAAGTGCACAAGATAAA+AGG | - | chr4.4:20556504-20556523 | None:intergenic | 25.0% |
| ! | TTAGGTAATAGACTTTATCA+TGG | + | chr4.4:20556450-20556469 | MS.gene35047:intron | 25.0% |
| ! | TTTCGCTTATAAACAAGATT+AGG | - | chr4.4:20556923-20556942 | None:intergenic | 25.0% |
| !! | AAAATTCTCTTTTGTTCAAC+TGG | - | chr4.4:20555421-20555440 | None:intergenic | 25.0% |
| !! | ATCTGAAATGAAAACATATG+GGG | - | chr4.4:20555205-20555224 | None:intergenic | 25.0% |
| !! | CAAGTTGAATTTGTAATGTT+GGG | + | chr4.4:20554721-20554740 | MS.gene35047:intron | 25.0% |
| !! | CATCTGAAATGAAAACATAT+GGG | - | chr4.4:20555206-20555225 | None:intergenic | 25.0% |
| !! | GAACAAAAGAGAATTTTCTT+TGG | + | chr4.4:20555424-20555443 | MS.gene35047:CDS | 25.0% |
| !! | GGCTTTACTGATTATAATAT+TGG | + | chr4.4:20556406-20556425 | MS.gene35047:intron | 25.0% |
| !!! | AATTTTGATATGTCTGGATT+TGG | + | chr4.4:20556878-20556897 | MS.gene35047:intron | 25.0% |
| !!! | ATGTTCTTACACTTGTTTTA+TGG | + | chr4.4:20555907-20555926 | MS.gene35047:intron | 25.0% |
| !!! | ATTTTGATATGTCTGGATTT+GGG | + | chr4.4:20556879-20556898 | MS.gene35047:intron | 25.0% |
| !!! | CTATCAATTGCTATTTACAT+AGG | - | chr4.4:20554413-20554432 | None:intergenic | 25.0% |
| !!! | GTCATTTTACAAGTTAATTG+CGG | + | chr4.4:20556371-20556390 | MS.gene35047:intron | 25.0% |
| !!! | TCACTTTTCAGTTAGATAAA+AGG | - | chr4.4:20556279-20556298 | None:intergenic | 25.0% |
| !!! | TGCTTACTTTTGATATTATG+TGG | + | chr4.4:20554493-20554512 | MS.gene35047:intron | 25.0% |
| !!! | TTTATTTTTTTTATGTGGGG+TGG | + | chr4.4:20554078-20554097 | MS.gene35047:intron | 25.0% |
| AAAATTAACCTGCAAAATCC+TGG | - | chr4.4:20555106-20555125 | None:intergenic | 30.0% | |
| AAACTTATTTCCTCTGTGTA+AGG | - | chr4.4:20557418-20557437 | None:intergenic | 30.0% | |
| AAGTCCTCTTAAAGATTTGA+GGG | + | chr4.4:20556751-20556770 | MS.gene35047:intron | 30.0% | |
| AATTTCCAACTAGTGAGATA+TGG | - | chr4.4:20556613-20556632 | None:intergenic | 30.0% | |
| AGTCTACTACATCATATAAG+TGG | - | chr4.4:20555970-20555989 | None:intergenic | 30.0% | |
| ATATTAGGAAAAGACACAAC+TGG | + | chr4.4:20556813-20556832 | MS.gene35047:intron | 30.0% | |
| ATCAAAAGCTCCAAACAATT+TGG | - | chr4.4:20553700-20553719 | None:intergenic | 30.0% | |
| ATTTCCAACTAGTGAGATAT+GGG | - | chr4.4:20556612-20556631 | None:intergenic | 30.0% | |
| GAAACTGTATCATCTGATTT+GGG | + | chr4.4:20554588-20554607 | MS.gene35047:intron | 30.0% | |
| GAAGAAATCAGCTTAAAACA+TGG | - | chr4.4:20557334-20557353 | None:intergenic | 30.0% | |
| GAATCTTTAGCCAAATTGTT+TGG | + | chr4.4:20553687-20553706 | MS.gene35047:CDS | 30.0% | |
| GAATGGCGATTATAAGATTA+AGG | + | chr4.4:20557546-20557565 | MS.gene35047:CDS | 30.0% | |
| GACAAAAGAAAGATACTTGT+TGG | - | chr4.4:20555289-20555308 | None:intergenic | 30.0% | |
| GTTTACTTATATCCCTTTCA+AGG | + | chr4.4:20554302-20554321 | MS.gene35047:CDS | 30.0% | |
| TAATAGACTTTATCATGGAC+TGG | + | chr4.4:20556455-20556474 | MS.gene35047:intron | 30.0% | |
| TATGTAGGTATACTTGTGAA+GGG | + | chr4.4:20554105-20554124 | MS.gene35047:intron | 30.0% | |
| TCATACAAGCAAAATAGATC+TGG | - | chr4.4:20554950-20554969 | None:intergenic | 30.0% | |
| TGGAAATTAGAACAGACATA+AGG | + | chr4.4:20556625-20556644 | MS.gene35047:intron | 30.0% | |
| TTACACAGAGGAAATAAGTT+TGG | + | chr4.4:20557417-20557436 | MS.gene35047:CDS | 30.0% | |
| TTACTGACAATGGTTAAGAT+AGG | + | chr4.4:20557391-20557410 | MS.gene35047:CDS | 30.0% | |
| TTATGTAGGTATACTTGTGA+AGG | + | chr4.4:20554104-20554123 | MS.gene35047:intron | 30.0% | |
| TTGATATTATGTGGTGCAAA+GGG | + | chr4.4:20554502-20554521 | MS.gene35047:intron | 30.0% | |
| TTTACAAGTTAATTGCGGAA+GGG | + | chr4.4:20556376-20556395 | MS.gene35047:intron | 30.0% | |
| TTTGATATTATGTGGTGCAA+AGG | + | chr4.4:20554501-20554520 | MS.gene35047:intron | 30.0% | |
| ! | AACTACATTATGGTTCTGTT+CGG | + | chr4.4:20554625-20554644 | MS.gene35047:intron | 30.0% |
| ! | AATTTTGTCTTGCTAAACAG+AGG | + | chr4.4:20555005-20555024 | MS.gene35047:intron | 30.0% |
| ! | AATTTTTCTTCTGATCCGAA+AGG | + | chr4.4:20556185-20556204 | MS.gene35047:intron | 30.0% |
| ! | ATCTATGTGTTTTCTTTCAC+AGG | + | chr4.4:20553637-20553656 | MS.gene35047:CDS | 30.0% |
| ! | ATTTTTCCAATCTCAGCAAT+TGG | + | chr4.4:20556248-20556267 | MS.gene35047:intron | 30.0% |
| ! | CACCTAGTAATTTTACAGTT+AGG | + | chr4.4:20556432-20556451 | MS.gene35047:intron | 30.0% |
| ! | GCAAGTTGAATTTGTAATGT+TGG | + | chr4.4:20554720-20554739 | MS.gene35047:intron | 30.0% |
| ! | GCATCTGAAATGAAAACATA+TGG | - | chr4.4:20555207-20555226 | None:intergenic | 30.0% |
| ! | TATTGCAATGGATTCTGTTT+AGG | + | chr4.4:20555733-20555752 | MS.gene35047:intron | 30.0% |
| ! | TCTATTCACTGTCATTTCAT+TGG | + | chr4.4:20554566-20554585 | MS.gene35047:intron | 30.0% |
| ! | TGTTTTCTTTCACAGGTTAT+TGG | + | chr4.4:20553644-20553663 | MS.gene35047:CDS | 30.0% |
| ! | TTCTTTTGTCCATCATTGTT+TGG | + | chr4.4:20555299-20555318 | MS.gene35047:intron | 30.0% |
| ! | TTTTACAAGTTAATTGCGGA+AGG | + | chr4.4:20556375-20556394 | MS.gene35047:intron | 30.0% |
| !! | GGAGTATGAGTTTTTCAAAA+AGG | - | chr4.4:20555268-20555287 | None:intergenic | 30.0% |
| !! | TGTTTGGAGTAATTTTAAGC+AGG | + | chr4.4:20555872-20555891 | MS.gene35047:CDS | 30.0% |
| !!! | GTACTTTTTTGTTAGTATCC+AGG | + | chr4.4:20555085-20555104 | MS.gene35047:intron | 30.0% |
| AAGTCAATAGCTGGTTGTAT+AGG | + | chr4.4:20556712-20556731 | MS.gene35047:intron | 35.0% | |
| AAGTGCACAAGATAAAAGGT+AGG | - | chr4.4:20556500-20556519 | None:intergenic | 35.0% | |
| ACAAAGTGACCAAACAATGA+TGG | - | chr4.4:20555311-20555330 | None:intergenic | 35.0% | |
| ACACACTCAACTAAACTGTA+AGG | - | chr4.4:20557199-20557218 | None:intergenic | 35.0% | |
| ACTAGTGAGATATGGGAATA+AGG | - | chr4.4:20556605-20556624 | None:intergenic | 35.0% | |
| AGCATAAGGAACTCATTCAA+GGG | + | chr4.4:20554280-20554299 | MS.gene35047:CDS | 35.0% | |
| AGGATTACTGTTGATACCTT+TGG | + | chr4.4:20554237-20554256 | MS.gene35047:CDS | 35.0% | |
| AGGTGAGTAGGACTAATATT+AGG | + | chr4.4:20556798-20556817 | MS.gene35047:intron | 35.0% | |
| AGTCCTCTTAAAGATTTGAG+GGG | + | chr4.4:20556752-20556771 | MS.gene35047:intron | 35.0% | |
| AGTGCACAAGATAAAAGGTA+GGG | - | chr4.4:20556499-20556518 | None:intergenic | 35.0% | |
| ATAACAGGGGTAAAATTGAG+AGG | + | chr4.4:20554828-20554847 | MS.gene35047:intron | 35.0% | |
| ATAATATGTGACCCTCCTTA+TGG | + | chr4.4:20557064-20557083 | MS.gene35047:CDS | 35.0% | |
| ATGGTAGAAATCTTAGTTGC+CGG | + | chr4.4:20556853-20556872 | MS.gene35047:intron | 35.0% | |
| CAAGTCCTCTTAAAGATTTG+AGG | + | chr4.4:20556750-20556769 | MS.gene35047:intron | 35.0% | |
| CATGGTTCTCCTTAAATTCA+AGG | - | chr4.4:20557459-20557478 | None:intergenic | 35.0% | |
| CCAGACATATCAAAATTTGC+CGG | - | chr4.4:20556875-20556894 | None:intergenic | 35.0% | |
| CTATTACTCAAGTCAATAGC+TGG | + | chr4.4:20556703-20556722 | MS.gene35047:intron | 35.0% | |
| CTTACTCACTATCATCTACA+AGG | - | chr4.4:20554697-20554716 | None:intergenic | 35.0% | |
| GAAAAGGTGAAGAATGAAGA+AGG | - | chr4.4:20555668-20555687 | None:intergenic | 35.0% | |
| GATGCAACACCTTGAATTTA+AGG | + | chr4.4:20557447-20557466 | MS.gene35047:CDS | 35.0% | |
| GCATTATGTTCTATGTCCAT+TGG | - | chr4.4:20556652-20556671 | None:intergenic | 35.0% | |
| GGAAACTGTATCATCTGATT+TGG | + | chr4.4:20554587-20554606 | MS.gene35047:intron | 35.0% | |
| GGATAGGAAACACATAATTC+CGG | - | chr4.4:20555053-20555072 | None:intergenic | 35.0% | |
| GGATTACTGTTGATACCTTT+GGG | + | chr4.4:20554238-20554257 | MS.gene35047:CDS | 35.0% | |
| GTACAATCAAACAAAGGGAT+AGG | - | chr4.4:20555069-20555088 | None:intergenic | 35.0% | |
| GTATATGTTGCAGTATGGAT+TGG | + | chr4.4:20556052-20556071 | MS.gene35047:intron | 35.0% | |
| TAACAGGGGTAAAATTGAGA+GGG | + | chr4.4:20554829-20554848 | MS.gene35047:intron | 35.0% | |
| TACGAGCAATTTCTTCTGAA+GGG | - | chr4.4:20553812-20553831 | None:intergenic | 35.0% | |
| TAGATCGTGAAAGGATAAGT+TGG | - | chr4.4:20555715-20555734 | None:intergenic | 35.0% | |
| TATTCCCATATCTCACTAGT+TGG | + | chr4.4:20556605-20556624 | MS.gene35047:intron | 35.0% | |
| TCTTAGTTCACGATATTGCA+GGG | + | chr4.4:20557366-20557385 | MS.gene35047:CDS | 35.0% | |
| TGAAAAGCCGTACTTATCTT+GGG | + | chr4.4:20555494-20555513 | MS.gene35047:CDS | 35.0% | |
| TTAAGGAGAACCATGTAAAG+TGG | + | chr4.4:20557464-20557483 | MS.gene35047:CDS | 35.0% | |
| TTACGAGCAATTTCTTCTGA+AGG | - | chr4.4:20553813-20553832 | None:intergenic | 35.0% | |
| TTCTTAGTTCACGATATTGC+AGG | + | chr4.4:20557365-20557384 | MS.gene35047:CDS | 35.0% | |
| TTGAAAAGCCGTACTTATCT+TGG | + | chr4.4:20555493-20555512 | MS.gene35047:CDS | 35.0% | |
| TTTGGCTAAAGATTCGACTT+CGG | - | chr4.4:20553682-20553701 | None:intergenic | 35.0% | |
| ! | ATTCTCTTTTGTTCAACTGG+AGG | - | chr4.4:20555418-20555437 | None:intergenic | 35.0% |
| ! | ATTTTCTTTGGTCGTGAAGT+TGG | + | chr4.4:20555436-20555455 | MS.gene35047:CDS | 35.0% |
| ! | CTAGTTTATGACCCTTTTGT+TGG | + | chr4.4:20555583-20555602 | MS.gene35047:CDS | 35.0% |
| ! | GTTGATGAACTAGCTTATAG+CGG | + | chr4.4:20554667-20554686 | MS.gene35047:intron | 35.0% |
| !! | TATAAGCATCCGCTTTTGTT+CGG | + | chr4.4:20556520-20556539 | MS.gene35047:intron | 35.0% |
| !! | TGTATCATCTGATTTGGGTT+TGG | + | chr4.4:20554593-20554612 | MS.gene35047:intron | 35.0% |
| !!! | AAATGCCAGTTGGTCTTTTA+AGG | + | chr4.4:20556075-20556094 | MS.gene35047:CDS | 35.0% |
| !!! | AATGCCAGTTGGTCTTTTAA+GGG | + | chr4.4:20556076-20556095 | MS.gene35047:CDS | 35.0% |
| AAAGGACACACAACCTTGAA+AGG | - | chr4.4:20554318-20554337 | None:intergenic | 40.0% | |
| AAATTTACCTCTTTCAGCCC+CGG | - | chr4.4:20556128-20556147 | None:intergenic | 40.0% | |
| AAGGACACACAACCTTGAAA+GGG | - | chr4.4:20554317-20554336 | None:intergenic | 40.0% | |
| AAGGGAATGTATGAGCTATG+GGG | + | chr4.4:20554123-20554142 | MS.gene35047:CDS | 40.0% | |
| ACCAAATGGAAAGGAGAATC+TGG | - | chr4.4:20553783-20553802 | None:intergenic | 40.0% | |
| AGAACAGACATAAGGTCCAA+TGG | + | chr4.4:20556633-20556652 | MS.gene35047:intron | 40.0% | |
| AGCTTAAAACATGGATGCTC+CGG | - | chr4.4:20557325-20557344 | None:intergenic | 40.0% | |
| AGGAAATAAGTTTGGCAGCT+AGG | + | chr4.4:20557425-20557444 | MS.gene35047:CDS | 40.0% | |
| ATAAAAGGTAGGGTTGGACT+TGG | - | chr4.4:20556489-20556508 | None:intergenic | 40.0% | |
| ATACTTCCGGTTCCAACAAA+AGG | - | chr4.4:20555598-20555617 | None:intergenic | 40.0% | |
| CACAAGATAAAAGGTAGGGT+TGG | - | chr4.4:20556495-20556514 | None:intergenic | 40.0% | |
| CAGCAACACAATTACCGAAA+GGG | - | chr4.4:20556338-20556357 | None:intergenic | 40.0% | |
| CATGGTAAATTATGACCACG+AGG | + | chr4.4:20554371-20554390 | MS.gene35047:intron | 40.0% | |
| CATGTAAAGTGGCTAGAAGA+TGG | + | chr4.4:20557475-20557494 | MS.gene35047:CDS | 40.0% | |
| CCAAATGGAAAGGAGAATCT+GGG | - | chr4.4:20553782-20553801 | None:intergenic | 40.0% | |
| CCATTGCAATAGATCGTGAA+AGG | - | chr4.4:20555724-20555743 | None:intergenic | 40.0% | |
| CCTTTCACGATCTATTGCAA+TGG | + | chr4.4:20555721-20555740 | MS.gene35047:intron | 40.0% | |
| GAAGGGAATGTATGAGCTAT+GGG | + | chr4.4:20554122-20554141 | MS.gene35047:CDS | 40.0% | |
| GACTCTTCTTCTCTCAATAC+AGG | - | chr4.4:20557286-20557305 | None:intergenic | 40.0% | |
| GAGACTAATAACCTTCCCAA+AGG | - | chr4.4:20554256-20554275 | None:intergenic | 40.0% | |
| GAGCATAAGGAACTCATTCA+AGG | + | chr4.4:20554279-20554298 | MS.gene35047:CDS | 40.0% | |
| GATGCTCAGTTAAAGGAGAA+TGG | + | chr4.4:20557529-20557548 | MS.gene35047:CDS | 40.0% | |
| GCAAAACCAATTGCTGAGAT+TGG | - | chr4.4:20556257-20556276 | None:intergenic | 40.0% | |
| GTCTCCACATAATCATTTCC+CGG | + | chr4.4:20557303-20557322 | MS.gene35047:CDS | 40.0% | |
| GTGGTTTATTACCTCCCTTT+CGG | + | chr4.4:20556321-20556340 | MS.gene35047:intron | 40.0% | |
| GTTAAGCAATCTCCTTAGAC+AGG | - | chr4.4:20556569-20556588 | None:intergenic | 40.0% | |
| TAAGATAGGTCCTTACACAG+AGG | + | chr4.4:20557405-20557424 | MS.gene35047:CDS | 40.0% | |
| TAATTGCGGAAGGGATAGAT+TGG | + | chr4.4:20556385-20556404 | MS.gene35047:intron | 40.0% | |
| TACTATGCACCGAACAAAAG+CGG | - | chr4.4:20556532-20556551 | None:intergenic | 40.0% | |
| TACTTCCGGTTCCAACAAAA+GGG | - | chr4.4:20555597-20555616 | None:intergenic | 40.0% | |
| TAGCTTCTATTGAGAGTTGC+CGG | + | chr4.4:20555031-20555050 | MS.gene35047:intron | 40.0% | |
| TATGGCAACTTTCTCTCATC+TGG | - | chr4.4:20554195-20554214 | None:intergenic | 40.0% | |
| TCAGCAACACAATTACCGAA+AGG | - | chr4.4:20556339-20556358 | None:intergenic | 40.0% | |
| TCTCCCCTCAAATCTTTAAG+AGG | - | chr4.4:20556758-20556777 | None:intergenic | 40.0% | |
| TCTTAAAGATTTGAGGGGAG+AGG | + | chr4.4:20556757-20556776 | MS.gene35047:intron | 40.0% | |
| TGAAGGGAATGTATGAGCTA+TGG | + | chr4.4:20554121-20554140 | MS.gene35047:CDS | 40.0% | |
| TGAGAGAAAGTTGCCATACT+TGG | + | chr4.4:20554197-20554216 | MS.gene35047:CDS | 40.0% | |
| TGAGATATGGGAATAAGGCT+TGG | - | chr4.4:20556600-20556619 | None:intergenic | 40.0% | |
| TGCTGCAACAAGAATACTTC+CGG | - | chr4.4:20555611-20555630 | None:intergenic | 40.0% | |
| TGGAATCTAACAGCACTTTC+AGG | + | chr4.4:20554217-20554236 | MS.gene35047:CDS | 40.0% | |
| TGGCTGTATATGTTGCAGTA+TGG | + | chr4.4:20556047-20556066 | MS.gene35047:intron | 40.0% | |
| TTACTCCAAACATTACGGTC+AGG | - | chr4.4:20555864-20555883 | None:intergenic | 40.0% | |
| TTGGCTAAAGATTCGACTTC+GGG | - | chr4.4:20553681-20553700 | None:intergenic | 40.0% | |
| ! | CATCTTCTAGCCACTTTACA+TGG | - | chr4.4:20557477-20557496 | None:intergenic | 40.0% |
| ! | GTGCTGTTAGATTCCAAGTA+TGG | - | chr4.4:20554213-20554232 | None:intergenic | 40.0% |
| ! | GTTAGTATCCAGGATTTTGC+AGG | + | chr4.4:20555095-20555114 | MS.gene35047:intron | 40.0% |
| ! | GTTTGGTCACTTTGTTTGCA+GGG | + | chr4.4:20555316-20555335 | MS.gene35047:intron | 40.0% |
| ! | TACTGTTGATACCTTTGGGA+AGG | + | chr4.4:20554242-20554261 | MS.gene35047:CDS | 40.0% |
| ! | TATGACCCTTTTGTTGGAAC+CGG | + | chr4.4:20555589-20555608 | MS.gene35047:CDS | 40.0% |
| ! | TATTAGTCTCCAGGAGCATA+AGG | + | chr4.4:20554266-20554285 | MS.gene35047:CDS | 40.0% |
| ! | TGCGGAGATAGCTTTTCTAA+TGG | + | chr4.4:20555531-20555550 | MS.gene35047:CDS | 40.0% |
| ! | TGTTTGGTCACTTTGTTTGC+AGG | + | chr4.4:20555315-20555334 | MS.gene35047:intron | 40.0% |
| ! | TTGCAGGGTATTACTGACAA+TGG | + | chr4.4:20557381-20557400 | MS.gene35047:CDS | 40.0% |
| !! | CCGGCAAATTTTGATATGTC+TGG | + | chr4.4:20556872-20556891 | MS.gene35047:intron | 40.0% |
| !! | TATGGATTGGAAATGCCAGT+TGG | + | chr4.4:20556065-20556084 | MS.gene35047:CDS | 40.0% |
| !! | TCAATAGTTTGCTGCACTCA+AGG | - | chr4.4:20554468-20554487 | None:intergenic | 40.0% |
| !!! | TCATTTTGGAGCAATGACCA+TGG | + | chr4.4:20555633-20555652 | MS.gene35047:CDS | 40.0% |
| AAAAGCTATCTCCGCATCCA+TGG | - | chr4.4:20555527-20555546 | None:intergenic | 45.0% | |
| AAACTGTAAGGTGCAGTCGA+TGG | - | chr4.4:20557187-20557206 | None:intergenic | 45.0% | |
| AAGGAGAATCTGGGTGATGA+TGG | - | chr4.4:20553773-20553792 | None:intergenic | 45.0% | |
| AGCATCTATGTGCTGTGTCT+TGG | + | chr4.4:20556210-20556229 | MS.gene35047:intron | 45.0% | |
| ATGTATGAGCTATGGGGTGA+AGG | + | chr4.4:20554129-20554148 | MS.gene35047:CDS | 45.0% | |
| ATGTGGGGTGGCAATTATGT+AGG | + | chr4.4:20554090-20554109 | MS.gene35047:intron | 45.0% | |
| CAACACAATTACCGAAAGGG+AGG | - | chr4.4:20556335-20556354 | None:intergenic | 45.0% | |
| CCCAGATTCTCCTTTCCATT+TGG | + | chr4.4:20553779-20553798 | MS.gene35047:CDS | 45.0% | |
| CTGAAGGGAGATTGACCAAA+TGG | - | chr4.4:20553797-20553816 | None:intergenic | 45.0% | |
| CTGAAGTGACAATAACCTCG+TGG | - | chr4.4:20554389-20554408 | None:intergenic | 45.0% | |
| CTGTTGGCCCAAGATAAGTA+CGG | - | chr4.4:20555504-20555523 | None:intergenic | 45.0% | |
| GAAAACCAGAGCACAACTTC+TGG | + | chr4.4:20555353-20555372 | MS.gene35047:CDS | 45.0% | |
| GAATGAGTTCCTTATGCTCC+TGG | - | chr4.4:20554278-20554297 | None:intergenic | 45.0% | |
| GACATTAGGGTAGTACGTGA+TGG | + | chr4.4:20555831-20555850 | MS.gene35047:CDS | 45.0% | |
| GCACATAGATGCTCTCCTTT+CGG | - | chr4.4:20556203-20556222 | None:intergenic | 45.0% | |
| GCTGCCAAGATGCTTGTATT+GGG | + | chr4.4:20557238-20557257 | MS.gene35047:CDS | 45.0% | |
| GCTTAAAACATGGATGCTCC+GGG | - | chr4.4:20557324-20557343 | None:intergenic | 45.0% | |
| GGACATTAGTATGAGCTCTG+AGG | + | chr4.4:20556778-20556797 | MS.gene35047:intron | 45.0% | |
| GGGAGATTGACCAAATGGAA+AGG | - | chr4.4:20553792-20553811 | None:intergenic | 45.0% | |
| GGTGGTAGGAAGCTACTAAA+GGG | + | chr4.4:20557112-20557131 | MS.gene35047:CDS | 45.0% | |
| GTGGTAGGAAGCTACTAAAG+GGG | + | chr4.4:20557113-20557132 | MS.gene35047:CDS | 45.0% | |
| TCAGCCCTTAAAAGACCAAC+TGG | - | chr4.4:20556083-20556102 | None:intergenic | 45.0% | |
| TCCAGTGGATGCTCAGTTAA+AGG | + | chr4.4:20557522-20557541 | MS.gene35047:CDS | 45.0% | |
| TCCTTTAACTGAGCATCCAC+TGG | - | chr4.4:20557526-20557545 | None:intergenic | 45.0% | |
| TGCTCCGGGAAATGATTATG+TGG | - | chr4.4:20557310-20557329 | None:intergenic | 45.0% | |
| TGCTGCCAAGATGCTTGTAT+TGG | + | chr4.4:20557237-20557256 | MS.gene35047:CDS | 45.0% | |
| TGGTAGGAAGCTACTAAAGG+GGG | + | chr4.4:20557114-20557133 | MS.gene35047:CDS | 45.0% | |
| TGGTGGTAGGAAGCTACTAA+AGG | + | chr4.4:20557111-20557130 | MS.gene35047:CDS | 45.0% | |
| TGTATGAGCTATGGGGTGAA+GGG | + | chr4.4:20554130-20554149 | MS.gene35047:CDS | 45.0% | |
| TGTGGAGCCTTACATTGTTC+CGG | + | chr4.4:20557138-20557157 | MS.gene35047:CDS | 45.0% | |
| TTGTCGTCCGGAACAATGTA+AGG | - | chr4.4:20557148-20557167 | None:intergenic | 45.0% | |
| ! | CGGCTTTTCAACTCGTATGT+CGG | - | chr4.4:20555484-20555503 | None:intergenic | 45.0% |
| ! | CTTGTTGCAGCAGCTCATTT+TGG | + | chr4.4:20555619-20555638 | MS.gene35047:CDS | 45.0% |
| ! | GGGTCATAAACTAGTTTCCC+CGG | - | chr4.4:20555577-20555596 | None:intergenic | 45.0% |
| ! | TGGGAAGGTTATTAGTCTCC+AGG | + | chr4.4:20554257-20554276 | MS.gene35047:CDS | 45.0% |
| ! | TGGTCTGTTCTTTTGTCGTC+CGG | - | chr4.4:20557160-20557179 | None:intergenic | 45.0% |
| ! | TTCTGCAGTTTTCAGTCCAG+TGG | + | chr4.4:20557507-20557526 | MS.gene35047:CDS | 45.0% |
| !! | AATCTGGGTGATGATGGAGA+GGG | - | chr4.4:20553767-20553786 | None:intergenic | 45.0% |
| !! | AGGGTGCTGACATTGACATT+AGG | + | chr4.4:20555817-20555836 | MS.gene35047:intron | 45.0% |
| !! | GGGTGCTGACATTGACATTA+GGG | + | chr4.4:20555818-20555837 | MS.gene35047:intron | 45.0% |
| !! | GGTAATTGTGTTGCTGACTC+TGG | + | chr4.4:20556342-20556361 | MS.gene35047:intron | 45.0% |
| !! | TGAGTGCTGAATCCTGTCTA+AGG | + | chr4.4:20556554-20556573 | MS.gene35047:intron | 45.0% |
| !!! | AAAATTTTATTTTTTTTATG+TGG | + | chr4.4:20554073-20554092 | MS.gene35047:intron | 5.0% |
| !!! | AAATTTTATTTTTTTTATGT+GGG | + | chr4.4:20554074-20554093 | MS.gene35047:intron | 5.0% |
| !!! | AATTTTTTAATTTTTTATAG+TGG | + | chr4.4:20554041-20554060 | MS.gene35047:intron | 5.0% |
| !!! | ATTTTTTAATTTTTTATAGT+GGG | + | chr4.4:20554042-20554061 | MS.gene35047:intron | 5.0% |
| AAGGTGCAGTCGATGGTATG+TGG | - | chr4.4:20557180-20557199 | None:intergenic | 50.0% | |
| ACGTTCATCCCCAGTTGCAA+TGG | + | chr4.4:20553736-20553755 | MS.gene35047:CDS | 50.0% | |
| AGGGAGCTTCCATTGCAACT+GGG | - | chr4.4:20553748-20553767 | None:intergenic | 50.0% | |
| ATCAGCCAGAAGTTGTGCTC+TGG | - | chr4.4:20555361-20555380 | None:intergenic | 50.0% | |
| GAAGAAGGAGAAGCAGACCA+TGG | - | chr4.4:20555653-20555672 | None:intergenic | 50.0% | |
| GCCAAGATGCTTGTATTGGG+CGG | + | chr4.4:20557241-20557260 | MS.gene35047:CDS | 50.0% | |
| GGGGAATAAGAGATGCACAC+AGG | - | chr4.4:20555186-20555205 | None:intergenic | 50.0% | |
| GGGTAGCTATGAGGAGTTGA+AGG | + | chr4.4:20554152-20554171 | MS.gene35047:CDS | 50.0% | |
| GTATGAGCTATGGGGTGAAG+GGG | + | chr4.4:20554131-20554150 | MS.gene35047:CDS | 50.0% | |
| TATGAGCTATGGGGTGAAGG+GGG | + | chr4.4:20554132-20554151 | MS.gene35047:CDS | 50.0% | |
| TCCGCCCAATACAAGCATCT+TGG | - | chr4.4:20557245-20557264 | None:intergenic | 50.0% | |
| TCTAATGGCCAACCAAGCAC+TGG | + | chr4.4:20555546-20555565 | MS.gene35047:CDS | 50.0% | |
| TTATCTTGGGCCAACAGCCA+TGG | + | chr4.4:20555507-20555526 | MS.gene35047:CDS | 50.0% | |
| ! | TTGCATTGGTGCTCTCTGCA+TGG | + | chr4.4:20554353-20554372 | MS.gene35047:intron | 50.0% |
| !! | GAATCTGGGTGATGATGGAG+AGG | - | chr4.4:20553768-20553787 | None:intergenic | 50.0% |
| !! | GTATGAGCTCTGAGGTGAGT+AGG | + | chr4.4:20556786-20556805 | MS.gene35047:intron | 50.0% |
| !! | GTGAAGTTGGTGCTGCTGAT+AGG | + | chr4.4:20555449-20555468 | MS.gene35047:CDS | 50.0% |
| ACCACCAGATTTGCGTCCTC+CGG | - | chr4.4:20557098-20557117 | None:intergenic | 55.0% | |
| ATCTCCGCATCCATGGCTGT+TGG | - | chr4.4:20555520-20555539 | None:intergenic | 55.0% | |
| CTGACAACAACCTTCCTCCC+TGG | + | chr4.4:20556099-20556118 | MS.gene35047:CDS | 55.0% | |
| GAAGCTACTAAAGGGGGCTG+TGG | + | chr4.4:20557120-20557139 | MS.gene35047:CDS | 55.0% | |
| GAGGACGCAAATCTGGTGGT+AGG | + | chr4.4:20557098-20557117 | MS.gene35047:CDS | 55.0% | |
| GAGGGAGCTTCCATTGCAAC+TGG | - | chr4.4:20553749-20553768 | None:intergenic | 55.0% | |
| GCGGTCCTGACCGTAATGTT+TGG | + | chr4.4:20555856-20555875 | MS.gene35047:CDS | 55.0% | |
| GGGAGCTTCCATTGCAACTG+GGG | - | chr4.4:20553747-20553766 | None:intergenic | 55.0% | |
| ! | GGGGATGAACGTCGTCGTTT+TGG | - | chr4.4:20553728-20553747 | None:intergenic | 55.0% |
| !! | AACCAAGCACTGGCTACTCC+GGG | + | chr4.4:20555556-20555575 | MS.gene35047:CDS | 55.0% |
| !! | AGGGTAGTACGTGATGGACG+CGG | + | chr4.4:20555837-20555856 | MS.gene35047:CDS | 55.0% |
| !! | CAACCAAGCACTGGCTACTC+CGG | + | chr4.4:20555555-20555574 | MS.gene35047:CDS | 55.0% |
| CCTCCTTATGGAGTGCGAGC+CGG | + | chr4.4:20557076-20557095 | MS.gene35047:CDS | 60.0% | |
| CGGAGTAGCCAGTGCTTGGT+TGG | - | chr4.4:20555557-20555576 | None:intergenic | 60.0% | |
| CGGCTCGCACTCCATAAGGA+GGG | - | chr4.4:20557078-20557097 | None:intergenic | 60.0% | |
| GGGTGAAGGGGGTAGCTATG+AGG | + | chr4.4:20554143-20554162 | MS.gene35047:CDS | 60.0% | |
| TGGGCCAACAGCCATGGATG+CGG | + | chr4.4:20555513-20555532 | MS.gene35047:CDS | 60.0% | |
| !! | ACCAAGCACTGGCTACTCCG+GGG | + | chr4.4:20555557-20555576 | MS.gene35047:CDS | 60.0% |
| AACCTTCCTCCCTGGCGTCC+GGG | + | chr4.4:20556107-20556126 | MS.gene35047:CDS | 65.0% | |
| CAACCTTCCTCCCTGGCGTC+CGG | + | chr4.4:20556106-20556125 | MS.gene35047:CDS | 65.0% | |
| CCTTATGGAGTGCGAGCCGG+AGG | + | chr4.4:20557079-20557098 | MS.gene35047:CDS | 65.0% | |
| CGAGCCGGAGGACGCAAATC+TGG | + | chr4.4:20557091-20557110 | MS.gene35047:CDS | 65.0% | |
| GCCGGAGGACGCAAATCTGG+TGG | + | chr4.4:20557094-20557113 | MS.gene35047:CDS | 65.0% | |
| TCCCCGGAGTAGCCAGTGCT+TGG | - | chr4.4:20555561-20555580 | None:intergenic | 65.0% | |
| TCTTTCAGCCCCGGACGCCA+GGG | - | chr4.4:20556119-20556138 | None:intergenic | 65.0% | |
| ! | CCGGCTCGCACTCCATAAGG+AGG | - | chr4.4:20557079-20557098 | None:intergenic | 65.0% |
| ! | CCTCCGGCTCGCACTCCATA+AGG | - | chr4.4:20557082-20557101 | None:intergenic | 65.0% |
| ACCTTCCTCCCTGGCGTCCG+GGG | + | chr4.4:20556108-20556127 | MS.gene35047:CDS | 70.0% | |
| CTCTTTCAGCCCCGGACGCC+AGG | - | chr4.4:20556120-20556139 | None:intergenic | 70.0% | |
| CTGGCGTCCGGGGCTGAAAG+AGG | + | chr4.4:20556118-20556137 | MS.gene35047:CDS | 70.0% | |
| TTCAGCCCCGGACGCCAGGG+AGG | - | chr4.4:20556116-20556135 | None:intergenic | 75.0% | |
| ! | GCCCCGGACGCCAGGGAGGA+AGG | - | chr4.4:20556112-20556131 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 20553630 | 20557603 | 20553630 | ID=MS.gene35047 |
| chr4.4 | mRNA | 20553630 | 20557603 | 20553630 | ID=MS.gene35047.t1;Parent=MS.gene35047 |
| chr4.4 | exon | 20553630 | 20553846 | 20553630 | ID=MS.gene35047.t1.exon1;Parent=MS.gene35047.t1 |
| chr4.4 | CDS | 20553630 | 20553846 | 20553630 | ID=cds.MS.gene35047.t1;Parent=MS.gene35047.t1 |
| chr4.4 | exon | 20554112 | 20554323 | 20554112 | ID=MS.gene35047.t1.exon2;Parent=MS.gene35047.t1 |
| chr4.4 | CDS | 20554112 | 20554323 | 20554112 | ID=cds.MS.gene35047.t1;Parent=MS.gene35047.t1 |
| chr4.4 | exon | 20555337 | 20555654 | 20555337 | ID=MS.gene35047.t1.exon3;Parent=MS.gene35047.t1 |
| chr4.4 | CDS | 20555337 | 20555654 | 20555337 | ID=cds.MS.gene35047.t1;Parent=MS.gene35047.t1 |
| chr4.4 | exon | 20555819 | 20555893 | 20555819 | ID=MS.gene35047.t1.exon4;Parent=MS.gene35047.t1 |
| chr4.4 | CDS | 20555819 | 20555893 | 20555819 | ID=cds.MS.gene35047.t1;Parent=MS.gene35047.t1 |
| chr4.4 | exon | 20556065 | 20556139 | 20556065 | ID=MS.gene35047.t1.exon5;Parent=MS.gene35047.t1 |
| chr4.4 | CDS | 20556065 | 20556139 | 20556065 | ID=cds.MS.gene35047.t1;Parent=MS.gene35047.t1 |
| chr4.4 | exon | 20557052 | 20557603 | 20557052 | ID=MS.gene35047.t1.exon6;Parent=MS.gene35047.t1 |
| chr4.4 | CDS | 20557052 | 20557603 | 20557052 | ID=cds.MS.gene35047.t1;Parent=MS.gene35047.t1 |
| Gene Sequence |
| Protein sequence |
