AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056257


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056257.t1 MTR_1g114000 99.365 315 0 1 1 315 1 313 0.0 616
MS.gene056257.t1 MTR_6g047580 97.510 241 6 0 75 315 69 309 2.40e-175 488
MS.gene056257.t1 MTR_6g047580 93.985 266 16 0 50 315 12 277 6.08e-173 480
MS.gene056257.t1 MTR_6g047580 97.826 184 4 0 75 258 69 252 1.23e-129 370
MS.gene056257.t1 MTR_6g047580 84.293 191 28 1 75 265 69 257 1.06e-112 327
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056257.t1 AT4G25630 90.984 244 22 0 71 314 74 317 9.87e-168 469
MS.gene056257.t1 AT5G52470 90.083 242 24 0 71 312 63 304 2.68e-165 462
MS.gene056257.t1 AT5G52490 71.074 242 70 0 69 310 51 292 2.40e-128 368
MS.gene056257.t1 AT5G52470 93.902 164 10 0 71 234 63 226 3.16e-111 324

Find 111 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAAATACCCTCATGTCTA+TGG 0.205671 1.3:+76921192 None:intergenic
GGAGGTGGGAGAGGTGGTTT+TGG 0.245696 1.3:-76921356 MS.gene056257:CDS
TGTCTAGCATCTTCAATAAT+TGG 0.265009 1.3:+76920374 None:intergenic
CTTTACCTAGGAGCTGCTTC+TGG 0.296675 1.3:-76920618 MS.gene056257:CDS
TATAACATTAGTACGCTTCT+TGG 0.324454 1.3:+76920397 None:intergenic
CTAAGACAGAGTATAGAATT+TGG 0.324854 1.3:-76920800 MS.gene056257:CDS
GGAGGAAGGGGTGGTGATAG+AGG 0.351363 1.3:-76921386 MS.gene056257:CDS
TGGGCGTGACTTGGTCAATA+TGG 0.352165 1.3:-76920420 MS.gene056257:CDS
TCAAGAGTCACTTGCTCCAT+TGG 0.352395 1.3:+76918836 None:intergenic
GGCCGTGGTGGTTCTGGTGG+AGG 0.363670 1.3:-76921416 MS.gene056257:CDS
TGTACAGGCCGTGGTGGTTC+TGG 0.364877 1.3:-76921422 MS.gene056257:intron
GGAGGCCGTGGTGGCGGAAG+AGG 0.374341 1.3:-76921254 MS.gene056257:CDS
GGAGGTAGAGGAGGTGGGAG+AGG 0.378171 1.3:-76921365 MS.gene056257:CDS
GATAGAGGAGGTAGAGGAGG+TGG 0.391157 1.3:-76921371 MS.gene056257:CDS
CGGAAGAGGTGGTGGAATGA+AGG 0.392714 1.3:-76921240 MS.gene056257:CDS
AGGGACCATGCTTGTGTTGT+TGG 0.394797 1.3:-76918803 MS.gene056257:CDS
GTCACTAAGAATCTTGTTCC+TGG 0.395090 1.3:-76921143 MS.gene056257:CDS
GGCAGAGGAGGACGTGGAGG+AGG 0.399351 1.3:-76921272 MS.gene056257:CDS
TGATGTTGCTCAGCCTGATC+AGG 0.400610 1.3:-76920303 MS.gene056257:intron
AGAGGTGGCGGTAGAGGCGG+AGG 0.402146 1.3:-76921296 MS.gene056257:CDS
GGAGGGTTCAGAGGAGGAAG+GGG 0.404742 1.3:-76921398 MS.gene056257:CDS
CGTGGAGGAGGCCGTGGTGG+CGG 0.406160 1.3:-76921260 MS.gene056257:CDS
GGTAGAGGCGGAGGAGGCAG+AGG 0.408492 1.3:-76921287 MS.gene056257:CDS
GGTGGCGGTAGAGGCGGAGG+AGG 0.421527 1.3:-76921293 MS.gene056257:CDS
GGGTTCAGAGGAGGAAGGGG+TGG 0.421936 1.3:-76921395 MS.gene056257:CDS
ACACTTTGTTATTTCTATCA+AGG 0.422492 1.3:-76919253 MS.gene056257:intron
TTGGTGGTGTCGACAATATA+TGG 0.424660 1.3:-76920743 MS.gene056257:CDS
GGAGGACGTGGAGGAGGCCG+TGG 0.430468 1.3:-76921266 MS.gene056257:CDS
AAATTAAACCACACCTGATC+AGG 0.438185 1.3:+76920290 None:intergenic
GGAGGACGAGGAGGAGATAG+AGG 0.440185 1.3:-76921335 MS.gene056257:CDS
GGAGGAGGCAGAGGAGGACG+TGG 0.443901 1.3:-76921278 MS.gene056257:CDS
AACTGTGGAATCAATACAAT+TGG 0.448320 1.3:+76918916 None:intergenic
CGTGTTCTGTTACCTCGAAC+AGG 0.448367 1.3:+76921601 None:intergenic
GCCAACCAACATTCTGTACT+TGG 0.454773 1.3:+76920346 None:intergenic
CCATCGAAGTGGGCGTGACT+TGG 0.458744 1.3:-76920429 MS.gene056257:CDS
ATAGAGGAGGTAGAGGAGGT+GGG 0.464408 1.3:-76921370 MS.gene056257:CDS
CGTGGTGGCGGAAGAGGTGG+TGG 0.465952 1.3:-76921248 MS.gene056257:CDS
GCTAGAGGTGGCGGTAGAGG+CGG 0.468529 1.3:-76921299 MS.gene056257:CDS
AAGGCTAGAGGTGGCGGTAG+AGG 0.468910 1.3:-76921302 MS.gene056257:CDS
TCTCATGTGTCTGATATTGT+TGG 0.470006 1.3:-76920585 MS.gene056257:CDS
AGATAGAGGTACCCCTTTCA+AGG 0.470760 1.3:-76921321 MS.gene056257:CDS
AAGTTGGCAGCTGCTGTCCT+TGG 0.472296 1.3:-76920762 MS.gene056257:CDS
GCCGTGGTGGTTCTGGTGGA+GGG 0.473475 1.3:-76921415 MS.gene056257:CDS
GGTAGAGGAGGTGGGAGAGG+TGG 0.474660 1.3:-76921362 MS.gene056257:CDS
CGCCACCTCTAGCCTTGAAA+GGG 0.477576 1.3:+76921309 None:intergenic
GAAAATACCCTCATGTCTAT+GGG 0.477789 1.3:+76921193 None:intergenic
CCAAGTCACGCCCACTTCGA+TGG 0.482871 1.3:+76920429 None:intergenic
AGAGGCGGAGGAGGCAGAGG+AGG 0.484426 1.3:-76921284 MS.gene056257:CDS
GGTGGTGATAGAGGAGGTAG+AGG 0.485873 1.3:-76921377 MS.gene056257:CDS
GGCCGTGGTGGCGGAAGAGG+TGG 0.485933 1.3:-76921251 MS.gene056257:CDS
GGAAGAGGTGGTGGAATGAA+GGG 0.492329 1.3:-76921239 MS.gene056257:CDS
CAAGCATGGTCCCTCTCAAA+TGG 0.492656 1.3:+76918812 None:intergenic
GACCATGCTTGTGTTGTTGG+TGG 0.497588 1.3:-76918800 MS.gene056257:CDS
TGAGAAGAGGGTTACCGTGC+AGG 0.499140 1.3:-76921105 MS.gene056257:intron
ACCAACATTCTGTACTTGGC+GGG 0.501411 1.3:+76920350 None:intergenic
GCGCTGAATACTGCCTCAGC+TGG 0.502016 1.3:+76918893 None:intergenic
GCTTCATATTATCTCAAAGC+TGG 0.503141 1.3:-76919279 MS.gene056257:CDS
GGTGATAGAGGAGGTAGAGG+AGG 0.504276 1.3:-76921374 MS.gene056257:CDS
CAGAAGCAGCTCCTAGGTAA+AGG 0.506248 1.3:+76920619 None:intergenic
CTCAAAATATAGAGGCTACT+CGG 0.506705 1.3:+76918748 None:intergenic
CCGCCACCTCTAGCCTTGAA+AGG 0.514108 1.3:+76921308 None:intergenic
TTGGCAGCTGCTGTCCTTGG+TGG 0.517332 1.3:-76920759 MS.gene056257:CDS
AGCTGATCAATTTAAGCCAA+TGG 0.520445 1.3:-76918852 MS.gene056257:CDS
TTGTTCCAGAAGCAGCTCCT+AGG 0.523899 1.3:+76920613 None:intergenic
TCATTGTAAACAGCTTCTCC+AGG 0.524882 1.3:+76921125 None:intergenic
AACCAACATTCTGTACTTGG+CGG 0.526725 1.3:+76920349 None:intergenic
GGAGGCAGAGGAGGACGTGG+AGG 0.526880 1.3:-76921275 MS.gene056257:CDS
TGGAATGAAGGGAGGAAGCA+AGG 0.532988 1.3:-76921228 MS.gene056257:CDS
ACAATGGCTCCTCCTGTTCG+AGG 0.533054 1.3:-76921613 MS.gene056257:intron
TGGAGGGTTCAGAGGAGGAA+GGG 0.537472 1.3:-76921399 MS.gene056257:CDS
GAACCCTTTCCGTTCTAAGT+TGG 0.539930 1.3:-76920778 MS.gene056257:CDS
GTACAGAATGTTGGTTGGCA+TGG 0.545696 1.3:-76920342 MS.gene056257:CDS
CCTTTCAAGGCTAGAGGTGG+CGG 0.550070 1.3:-76921308 MS.gene056257:CDS
TACTGCCTCAGCTGGAACTG+TGG 0.556438 1.3:+76918901 None:intergenic
CTGCCAACTTAGAACGGAAA+GGG 0.557631 1.3:+76920775 None:intergenic
AGGTAAAGGACTTTAGCGCC+AGG 0.557851 1.3:+76920633 None:intergenic
CAAGTCACGCCCACTTCGAT+GGG 0.558873 1.3:+76920430 None:intergenic
ACAGGCCGTGGTGGTTCTGG+TGG 0.566444 1.3:-76921419 MS.gene056257:intron
GACTCTTGAACCATTTGAGA+GGG 0.572197 1.3:-76918822 MS.gene056257:CDS
GTGGAGGGTTCAGAGGAGGA+AGG 0.574068 1.3:-76921400 MS.gene056257:CDS
GGTTCTGGTGGAGGGTTCAG+AGG 0.575244 1.3:-76921407 MS.gene056257:CDS
AGAGGTGGTGGAATGAAGGG+AGG 0.576093 1.3:-76921236 MS.gene056257:CDS
GGACGTGGAGGAGGCCGTGG+TGG 0.585474 1.3:-76921263 MS.gene056257:CDS
CAGCAGCTGCCAACTTAGAA+CGG 0.593341 1.3:+76920769 None:intergenic
TCTGGTGGAGGGTTCAGAGG+AGG 0.598909 1.3:-76921404 MS.gene056257:CDS
GGAAGGGGTGGTGATAGAGG+AGG 0.599693 1.3:-76921383 MS.gene056257:CDS
AAGCTGTTTACAATGAGAAG+AGG 0.601232 1.3:-76921118 MS.gene056257:CDS
AGCTGTTTACAATGAGAAGA+GGG 0.603845 1.3:-76921117 MS.gene056257:CDS
GTTGAACCCCATAGACATGA+GGG 0.606951 1.3:-76921200 MS.gene056257:CDS
TGATTCCACAGTTCCAGCTG+AGG 0.607935 1.3:-76918906 MS.gene056257:CDS
TGACTCTTGAACCATTTGAG+AGG 0.609035 1.3:-76918823 MS.gene056257:CDS
GCCAAGTACAGAATGTTGGT+TGG 0.614552 1.3:-76920347 MS.gene056257:CDS
TCCCGCCAAGTACAGAATGT+TGG 0.621000 1.3:-76920351 MS.gene056257:CDS
TGAATTTGTACAGGCCGTGG+TGG 0.621278 1.3:-76921428 MS.gene056257:intron
TGTTGAACCCCATAGACATG+AGG 0.622170 1.3:-76921201 MS.gene056257:CDS
TAGAATTCTCCCATCGAAGT+GGG 0.624110 1.3:-76920439 MS.gene056257:CDS
TCATATTATCTCAAAGCTGG+AGG 0.625407 1.3:-76919276 MS.gene056257:CDS
ACCCCTTTCAAGGCTAGAGG+TGG 0.626063 1.3:-76921311 MS.gene056257:CDS
GCTGCCAACTTAGAACGGAA+AGG 0.630241 1.3:+76920774 None:intergenic
CACCACCTCTTCCGCCACCA+CGG 0.647973 1.3:+76921249 None:intergenic
AGCCACCAACAACACAAGCA+TGG 0.648785 1.3:+76918798 None:intergenic
GGTACCCCTTTCAAGGCTAG+AGG 0.653441 1.3:-76921314 MS.gene056257:CDS
AAAATACCCTCATGTCTATG+GGG 0.663716 1.3:+76921194 None:intergenic
GTAGAATTCTCCCATCGAAG+TGG 0.663836 1.3:-76920440 MS.gene056257:CDS
GGCGCTAAAGTCCTTTACCT+AGG 0.679116 1.3:-76920630 MS.gene056257:CDS
ACCCTCCACCAGAACCACCA+CGG 0.696616 1.3:+76921414 None:intergenic
GCCACCTCTAGCCTTGAAAG+GGG 0.697135 1.3:+76921310 None:intergenic
TGAGAAAGGAAATACCTGCA+CGG 0.697697 1.3:+76921091 None:intergenic
GTTCTGTTACCTCGAACAGG+AGG 0.699595 1.3:+76921604 None:intergenic
TGAGGCAGTATTCAGCGCTG+AGG 0.706093 1.3:-76918888 MS.gene056257:CDS
ATATATTGTCGACACCACCA+AGG 0.737399 1.3:+76920745 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAATCATTAAAATAAATT+AGG + chr1.3:76920736-76920755 None:intergenic 10.0%
!! TGAAAATTTATAAACAAAAT+TGG + chr1.3:76920477-76920496 None:intergenic 10.0%
!!! TTTATTTGTTAAAATCAAAT+GGG - chr1.3:76918845-76918864 MS.gene056257:CDS 10.0%
!!! TTTTTAATTTGTTAACTTTT+TGG - chr1.3:76920759-76920778 MS.gene056257:CDS 10.0%
!! ATATGATGTTTATTAAATAG+TGG - chr1.3:76920824-76920843 MS.gene056257:intron 15.0%
!! TAATGCATAACAAAAAAATA+CGG + chr1.3:76921224-76921243 None:intergenic 15.0%
!! TGTCAATATAATGTATTTAA+AGG + chr1.3:76919694-76919713 None:intergenic 15.0%
!!! CAATTTTATTTTGTATTTGT+AGG - chr1.3:76921434-76921453 MS.gene056257:intron 15.0%
!!! CATTTGATTTTAACAAATAA+AGG + chr1.3:76918846-76918865 None:intergenic 15.0%
!!! CTTTATTTGTTAAAATCAAA+TGG - chr1.3:76918844-76918863 MS.gene056257:CDS 15.0%
!!! TTATATTGACATCTTAATTT+TGG - chr1.3:76919703-76919722 MS.gene056257:intron 15.0%
!! CATGTTATTCTATTTAATAG+TGG - chr1.3:76919507-76919526 MS.gene056257:intron 20.0%
!! CGAAAATTTATAAACAAAAC+AGG + chr1.3:76920451-76920470 None:intergenic 20.0%
!!! GTGTAAAATGTAAAATGTTT+TGG - chr1.3:76920282-76920301 MS.gene056257:intron 20.0%
!!! TGTTTTATAATGTTAAGAAC+AGG - chr1.3:76920639-76920658 MS.gene056257:CDS 20.0%
!!! TTTTAAAGCTTACTTTCTAT+AGG - chr1.3:76921182-76921201 MS.gene056257:CDS 20.0%
! AACACAAAACATACATATGT+TGG + chr1.3:76919859-76919878 None:intergenic 25.0%
! AATAAACTCTAATTCGAACA+AGG + chr1.3:76918806-76918825 None:intergenic 25.0%
! ACTTCAATAACAATAAACCA+TGG - chr1.3:76921243-76921262 MS.gene056257:CDS 25.0%
! ATAATGTTAAGAACAGGATT+GGG - chr1.3:76920645-76920664 MS.gene056257:intron 25.0%
! ATCTATCCAATGAAGTTATA+AGG + chr1.3:76921306-76921325 None:intergenic 25.0%
! ATGTTATTGTCCAGTAAAAT+AGG + chr1.3:76919411-76919430 None:intergenic 25.0%
! CTTCAATAACAATAAACCAT+GGG - chr1.3:76921244-76921263 MS.gene056257:CDS 25.0%
! TAAAATAAATTAGGCTCAAC+TGG + chr1.3:76920727-76920746 None:intergenic 25.0%
! TATAATGTTAAGAACAGGAT+TGG - chr1.3:76920644-76920663 MS.gene056257:intron 25.0%
! TATACTATGTTGATATTTGC+AGG - chr1.3:76921051-76921070 MS.gene056257:intron 25.0%
! TGATGTTTATTAAATAGTGG+TGG - chr1.3:76920827-76920846 MS.gene056257:intron 25.0%
!! ATATGTATGTTTTGTGTTTG+AGG - chr1.3:76919861-76919880 MS.gene056257:intron 25.0%
!! ATTCATTCACCATTTTACAA+AGG + chr1.3:76921343-76921362 None:intergenic 25.0%
!! TCATTTTGTTCCTATTTTAC+TGG - chr1.3:76919398-76919417 MS.gene056257:intron 25.0%
!! TTTTGACCTTATAACTTCAT+TGG - chr1.3:76921297-76921316 MS.gene056257:CDS 25.0%
!!! ACACTTTGTTATTTCTATCA+AGG - chr1.3:76921120-76921139 MS.gene056257:CDS 25.0%
!!! AGCTTTAAAAAACAAGAAAC+TGG + chr1.3:76921172-76921191 None:intergenic 25.0%
AACTGTGGAATCAATACAAT+TGG + chr1.3:76921460-76921479 None:intergenic 30.0%
AATGTTAACCAAATAGCAGT+GGG - chr1.3:76920993-76921012 MS.gene056257:intron 30.0%
AGATTGCAAATCAACAATCA+AGG + chr1.3:76920915-76920934 None:intergenic 30.0%
CAAGGATATAATGCAAGATA+CGG + chr1.3:76920897-76920916 None:intergenic 30.0%
CTAAGACAGAGTATAGAATT+TGG - chr1.3:76919573-76919592 MS.gene056257:intron 30.0%
CTGTAAGTATTAGTTCAACT+TGG - chr1.3:76919813-76919832 MS.gene056257:intron 30.0%
CTTACTTTCTATAGGAATCT+TGG - chr1.3:76921190-76921209 MS.gene056257:CDS 30.0%
GCTCAACTGGAAAAAAAAAA+GGG + chr1.3:76920714-76920733 None:intergenic 30.0%
TAATGTTAACCAAATAGCAG+TGG - chr1.3:76920992-76921011 MS.gene056257:intron 30.0%
TAATGTTAAGAACAGGATTG+GGG - chr1.3:76920646-76920665 MS.gene056257:intron 30.0%
TATAACATTAGTACGCTTCT+TGG + chr1.3:76919979-76919998 None:intergenic 30.0%
TGCATTAGTAGAAAAGTGAA+TGG + chr1.3:76920166-76920185 None:intergenic 30.0%
TGTCTAGCATCTTCAATAAT+TGG + chr1.3:76920002-76920021 None:intergenic 30.0%
! ACCATTTTACAAAGGTTTGA+AGG + chr1.3:76921335-76921354 None:intergenic 30.0%
! ACTGATTTAACATGTCTTGA+TGG - chr1.3:76920225-76920244 MS.gene056257:intron 30.0%
! CAAGTTGAACTAATACTTAC+AGG + chr1.3:76919815-76919834 None:intergenic 30.0%
! CCATTTTACAAAGGTTTGAA+GGG + chr1.3:76921334-76921353 None:intergenic 30.0%
! TATTTGCAGGCAAGAATTTT+AGG - chr1.3:76921064-76921083 MS.gene056257:intron 30.0%
!! TTGATTGTTGATTTGCAATC+TGG - chr1.3:76920914-76920933 MS.gene056257:intron 30.0%
!! TTGGTTTTTATCTAGAAACC+TGG - chr1.3:76919722-76919741 MS.gene056257:intron 30.0%
!!! TGTTTTGGTTACTACAACAT+CGG - chr1.3:76920297-76920316 MS.gene056257:intron 30.0%
AAAATACCCTCATGTCTATG+GGG + chr1.3:76919182-76919201 None:intergenic 35.0%
AAATATGTGCATCAGAATCC+CGG + chr1.3:76920377-76920396 None:intergenic 35.0%
AAATTAAACCACACCTGATC+AGG + chr1.3:76920086-76920105 None:intergenic 35.0%
AACTCTAATTCGAACAAGGA+TGG + chr1.3:76918802-76918821 None:intergenic 35.0%
AAGCTGTTTACAATGAGAAG+AGG - chr1.3:76919255-76919274 MS.gene056257:CDS 35.0%
AATGTTAAGAACAGGATTGG+GGG - chr1.3:76920647-76920666 MS.gene056257:intron 35.0%
AGCTGATCAATTTAAGCCAA+TGG - chr1.3:76921521-76921540 MS.gene056257:intron 35.0%
AGCTGTTTACAATGAGAAGA+GGG - chr1.3:76919256-76919275 MS.gene056257:CDS 35.0%
ATCATCCAAGAAGTCTTGAA+GGG + chr1.3:76920348-76920367 None:intergenic 35.0%
ATTCAAAGCACAAACATCCA+AGG + chr1.3:76919309-76919328 None:intergenic 35.0%
ATTGATGTGCATCAGAATCT+CGG + chr1.3:76920589-76920608 None:intergenic 35.0%
CAATAAACCATGGGAAAATG+AGG - chr1.3:76921253-76921272 MS.gene056257:CDS 35.0%
CATGTTCTGTTTATGTAGAC+TGG - chr1.3:76919897-76919916 MS.gene056257:intron 35.0%
CCCTTCAAACCTTTGTAAAA+TGG - chr1.3:76921331-76921350 MS.gene056257:CDS 35.0%
GAAAATACCCTCATGTCTAT+GGG + chr1.3:76919183-76919202 None:intergenic 35.0%
GCTTCATATTATCTCAAAGC+TGG - chr1.3:76921094-76921113 MS.gene056257:intron 35.0%
GGCTCAACTGGAAAAAAAAA+AGG + chr1.3:76920715-76920734 None:intergenic 35.0%
GGGAAAATGAGGTTAGTATT+TGG - chr1.3:76921264-76921283 MS.gene056257:CDS 35.0%
TCATATTATCTCAAAGCTGG+AGG - chr1.3:76921097-76921116 MS.gene056257:intron 35.0%
TCTCATGTGTCTGATATTGT+TGG - chr1.3:76919788-76919807 MS.gene056257:intron 35.0%
TGAAAATACCCTCATGTCTA+TGG + chr1.3:76919184-76919203 None:intergenic 35.0%
TTGTTGCGTTGAATTTGTAC+AGG - chr1.3:76918936-76918955 MS.gene056257:intron 35.0%
! ATACTAACCTCATTTTCCCA+TGG + chr1.3:76921263-76921282 None:intergenic 35.0%
! GACATATTTTCTGCAGAATG+AGG - chr1.3:76919544-76919563 MS.gene056257:intron 35.0%
! GGATTCTGATGCACATATTT+TGG - chr1.3:76920377-76920396 MS.gene056257:CDS 35.0%
! TATTTTCTGCAGAATGAGGA+TGG - chr1.3:76919548-76919567 MS.gene056257:intron 35.0%
!! AAAATGACTTTGAGACTGCA+AGG + chr1.3:76920862-76920881 None:intergenic 35.0%
!! TAATGACTTGTTTAGGCACA+TGG - chr1.3:76920673-76920692 MS.gene056257:intron 35.0%
!! TGCAGTCTCAAAGTCATTTT+TGG - chr1.3:76920862-76920881 MS.gene056257:intron 35.0%
!!! GAGGGTATTTTCATTGCTAA+GGG - chr1.3:76919191-76919210 MS.gene056257:intron 35.0%
!!! TCGGCATCTTTTTTCTTCTT+GGG + chr1.3:76921609-76921628 None:intergenic 35.0%
!!! TGAGGGTATTTTCATTGCTA+AGG - chr1.3:76919190-76919209 MS.gene056257:intron 35.0%
AACCAACATTCTGTACTTGG+CGG + chr1.3:76920027-76920046 None:intergenic 40.0%
AATATGTGCATCAGAATCCC+GGG + chr1.3:76920376-76920395 None:intergenic 40.0%
ACACTGACACGTAGAATACA+TGG + chr1.3:76921027-76921046 None:intergenic 40.0%
AGTGCATGTGATGAGTTACT+CGG - chr1.3:76920530-76920549 MS.gene056257:intron 40.0%
ATATATTGTCGACACCACCA+AGG + chr1.3:76919631-76919650 None:intergenic 40.0%
CAAACATCCAAGGATGAGAA+AGG + chr1.3:76919299-76919318 None:intergenic 40.0%
CATCATCCAAGAAGTCTTGA+AGG + chr1.3:76920349-76920368 None:intergenic 40.0%
GACTCTTGAACCATTTGAGA+GGG - chr1.3:76921551-76921570 MS.gene056257:intron 40.0%
GGTATTTCCTTTCTCATCCT+TGG - chr1.3:76919289-76919308 MS.gene056257:CDS 40.0%
GTCACTAAGAATCTTGTTCC+TGG - chr1.3:76919230-76919249 MS.gene056257:intron 40.0%
TAGAATTCTCCCATCGAAGT+GGG - chr1.3:76919934-76919953 MS.gene056257:intron 40.0%
TCATCCAAGAAGTCTTGAAG+GGG + chr1.3:76920347-76920366 None:intergenic 40.0%
TCATTGTAAACAGCTTCTCC+AGG + chr1.3:76919251-76919270 None:intergenic 40.0%
TGACTCTTGAACCATTTGAG+AGG - chr1.3:76921550-76921569 MS.gene056257:intron 40.0%
TGAGAAAGGAAATACCTGCA+CGG + chr1.3:76919285-76919304 None:intergenic 40.0%
TGTCAATGTTGATGCTTGCT+TGG - chr1.3:76921365-76921384 MS.gene056257:CDS 40.0%
TTGATGTGCATCAGAATCTC+GGG + chr1.3:76920588-76920607 None:intergenic 40.0%
!! TTGGTGGTGTCGACAATATA+TGG - chr1.3:76919630-76919649 MS.gene056257:intron 40.0%
!!! CTCGGCATCTTTTTTCTTCT+TGG + chr1.3:76921610-76921629 None:intergenic 40.0%
ACCAACATTCTGTACTTGGC+GGG + chr1.3:76920026-76920045 None:intergenic 45.0%
AGATTCGTCCCACTGCTATT+TGG + chr1.3:76921004-76921023 None:intergenic 45.0%
CTGCCAACTTAGAACGGAAA+GGG + chr1.3:76919601-76919620 None:intergenic 45.0%
CTTCTTGGATGATGTAGACC+CGG - chr1.3:76920355-76920374 MS.gene056257:CDS 45.0%
GATTCCCCTTCAAGACTTCT+TGG - chr1.3:76920340-76920359 MS.gene056257:CDS 45.0%
GCCAACCAACATTCTGTACT+TGG + chr1.3:76920030-76920049 None:intergenic 45.0%
GCCAAGTACAGAATGTTGGT+TGG - chr1.3:76920026-76920045 MS.gene056257:intron 45.0%
GGTGCATGTGATGAGTTACT+CGG - chr1.3:76920318-76920337 MS.gene056257:CDS 45.0%
GTAGAATTCTCCCATCGAAG+TGG - chr1.3:76919933-76919952 MS.gene056257:intron 45.0%
GTTGAACCCCATAGACATGA+GGG - chr1.3:76919173-76919192 MS.gene056257:intron 45.0%
TCAAGAGTCACTTGCTCCAT+TGG + chr1.3:76921540-76921559 None:intergenic 45.0%
TGTTGAACCCCATAGACATG+AGG - chr1.3:76919172-76919191 MS.gene056257:intron 45.0%
TTCTTGGATGATGTAGACCC+GGG - chr1.3:76920356-76920375 MS.gene056257:CDS 45.0%
! GAACCCTTTCCGTTCTAAGT+TGG - chr1.3:76919595-76919614 MS.gene056257:intron 45.0%
! GTACAGAATGTTGGTTGGCA+TGG - chr1.3:76920031-76920050 MS.gene056257:intron 45.0%
!! AGATAGAGGTACCCCTTTCA+AGG - chr1.3:76919052-76919071 MS.gene056257:intron 45.0%
!! GGGGCAGTAATGACTTGTTT+AGG - chr1.3:76920666-76920685 MS.gene056257:intron 45.0%
!!! TAAATTTTAATTTTTTGTAT+TGG - chr1.3:76921402-76921421 MS.gene056257:CDS 5.0%
AGCCACCAACAACACAAGCA+TGG + chr1.3:76921578-76921597 None:intergenic 50.0%
AGGGACCATGCTTGTGTTGT+TGG - chr1.3:76921570-76921589 MS.gene056257:intron 50.0%
AGGTAAAGGACTTTAGCGCC+AGG + chr1.3:76919743-76919762 None:intergenic 50.0%
ATAGAGGAGGTAGAGGAGGT+GGG - chr1.3:76919003-76919022 MS.gene056257:intron 50.0%
CAAGCATGGTCCCTCTCAAA+TGG + chr1.3:76921564-76921583 None:intergenic 50.0%
CAGAAGCAGCTCCTAGGTAA+AGG + chr1.3:76919757-76919776 None:intergenic 50.0%
CAGCAGCTGCCAACTTAGAA+CGG + chr1.3:76919607-76919626 None:intergenic 50.0%
CGTGTTCTGTTACCTCGAAC+AGG + chr1.3:76918775-76918794 None:intergenic 50.0%
CGTTGAATTTGTACAGGCCG+TGG - chr1.3:76918942-76918961 MS.gene056257:intron 50.0%
CTTTACCTAGGAGCTGCTTC+TGG - chr1.3:76919755-76919774 MS.gene056257:intron 50.0%
GCTGCCAACTTAGAACGGAA+AGG + chr1.3:76919602-76919621 None:intergenic 50.0%
GGCGCTAAAGTCCTTTACCT+AGG - chr1.3:76919743-76919762 MS.gene056257:intron 50.0%
GTTCTGTTACCTCGAACAGG+AGG + chr1.3:76918772-76918791 None:intergenic 50.0%
TCCCGCCAAGTACAGAATGT+TGG - chr1.3:76920022-76920041 MS.gene056257:intron 50.0%
TGAATTTGTACAGGCCGTGG+TGG - chr1.3:76918945-76918964 MS.gene056257:intron 50.0%
TGATGTTGCTCAGCCTGATC+AGG - chr1.3:76920070-76920089 MS.gene056257:intron 50.0%
TGATTCCACAGTTCCAGCTG+AGG - chr1.3:76921467-76921486 MS.gene056257:intron 50.0%
TGGAATGAAGGGAGGAAGCA+AGG - chr1.3:76919145-76919164 MS.gene056257:intron 50.0%
TTGTTCCAGAAGCAGCTCCT+AGG + chr1.3:76919763-76919782 None:intergenic 50.0%
! GACCATGCTTGTGTTGTTGG+TGG - chr1.3:76921573-76921592 MS.gene056257:intron 50.0%
!! GGAAGAGGTGGTGGAATGAA+GGG - chr1.3:76919134-76919153 MS.gene056257:intron 50.0%
!! TGGGCGTGACTTGGTCAATA+TGG - chr1.3:76919953-76919972 MS.gene056257:intron 50.0%
AAGTTGGCAGCTGCTGTCCT+TGG - chr1.3:76919611-76919630 MS.gene056257:intron 55.0%
ACCCCTTTCAAGGCTAGAGG+TGG - chr1.3:76919062-76919081 MS.gene056257:intron 55.0%
CAAGTCACGCCCACTTCGAT+GGG + chr1.3:76919946-76919965 None:intergenic 55.0%
CCTTTCAAGGCTAGAGGTGG+CGG - chr1.3:76919065-76919084 MS.gene056257:intron 55.0%
GATAGAGGAGGTAGAGGAGG+TGG - chr1.3:76919002-76919021 MS.gene056257:intron 55.0%
GGTACCCCTTTCAAGGCTAG+AGG - chr1.3:76919059-76919078 MS.gene056257:intron 55.0%
GGTGATAGAGGAGGTAGAGG+AGG - chr1.3:76918999-76919018 MS.gene056257:intron 55.0%
GGTGGTGATAGAGGAGGTAG+AGG - chr1.3:76918996-76919015 MS.gene056257:intron 55.0%
TACTGCCTCAGCTGGAACTG+TGG + chr1.3:76921475-76921494 None:intergenic 55.0%
TGAGAAGAGGGTTACCGTGC+AGG - chr1.3:76919268-76919287 MS.gene056257:CDS 55.0%
TGAGGCAGTATTCAGCGCTG+AGG - chr1.3:76921485-76921504 MS.gene056257:intron 55.0%
TGGAGGGTTCAGAGGAGGAA+GGG - chr1.3:76918974-76918993 MS.gene056257:intron 55.0%
TTGCTCAGCCTGATCAGGTG+TGG - chr1.3:76920075-76920094 MS.gene056257:intron 55.0%
!! AGAGGTGGTGGAATGAAGGG+AGG - chr1.3:76919137-76919156 MS.gene056257:intron 55.0%
!! CGCCACCTCTAGCCTTGAAA+GGG + chr1.3:76919067-76919086 None:intergenic 55.0%
!! CGGAAGAGGTGGTGGAATGA+AGG - chr1.3:76919133-76919152 MS.gene056257:intron 55.0%
!! GCCACCTCTAGCCTTGAAAG+GGG + chr1.3:76919066-76919085 None:intergenic 55.0%
!!! AGAGGTGGTTTTGGAGGACG+AGG - chr1.3:76919026-76919045 MS.gene056257:intron 55.0%
ACCCTCCACCAGAACCACCA+CGG + chr1.3:76918962-76918981 None:intergenic 60.0%
CCAAGTCACGCCCACTTCGA+TGG + chr1.3:76919947-76919966 None:intergenic 60.0%
CCATCGAAGTGGGCGTGACT+TGG - chr1.3:76919944-76919963 MS.gene056257:intron 60.0%
GCGCTGAATACTGCCTCAGC+TGG + chr1.3:76921483-76921502 None:intergenic 60.0%
GGAAGGGGTGGTGATAGAGG+AGG - chr1.3:76918990-76919009 MS.gene056257:intron 60.0%
GGAGGAAGGGGTGGTGATAG+AGG - chr1.3:76918987-76919006 MS.gene056257:intron 60.0%
GGAGGACGAGGAGGAGATAG+AGG - chr1.3:76919038-76919057 MS.gene056257:intron 60.0%
GGAGGGTTCAGAGGAGGAAG+GGG - chr1.3:76918975-76918994 MS.gene056257:intron 60.0%
GTGGAGGGTTCAGAGGAGGA+AGG - chr1.3:76918973-76918992 MS.gene056257:intron 60.0%
TCTGGTGGAGGGTTCAGAGG+AGG - chr1.3:76918969-76918988 MS.gene056257:intron 60.0%
TGTACAGGCCGTGGTGGTTC+TGG - chr1.3:76918951-76918970 MS.gene056257:intron 60.0%
TTGGCAGCTGCTGTCCTTGG+TGG - chr1.3:76919614-76919633 MS.gene056257:intron 60.0%
! AAGGCTAGAGGTGGCGGTAG+AGG - chr1.3:76919071-76919090 MS.gene056257:intron 60.0%
! GGAGGTGGGAGAGGTGGTTT+TGG - chr1.3:76919017-76919036 MS.gene056257:intron 60.0%
! GGTTCTGGTGGAGGGTTCAG+AGG - chr1.3:76918966-76918985 MS.gene056257:intron 60.0%
!! CCGCCACCTCTAGCCTTGAA+AGG + chr1.3:76919068-76919087 None:intergenic 60.0%
!!! GGTGGGAGAGGTGGTTTTGG+AGG - chr1.3:76919020-76919039 MS.gene056257:intron 60.0%
!!! GGTGGTTTTGGAGGACGAGG+AGG - chr1.3:76919029-76919048 MS.gene056257:intron 60.0%
CACCACCTCTTCCGCCACCA+CGG + chr1.3:76919127-76919146 None:intergenic 65.0%
GGAGGTAGAGGAGGTGGGAG+AGG - chr1.3:76919008-76919027 MS.gene056257:intron 65.0%
GGGTTCAGAGGAGGAAGGGG+TGG - chr1.3:76918978-76918997 MS.gene056257:intron 65.0%
GGTAGAGGAGGTGGGAGAGG+TGG - chr1.3:76919011-76919030 MS.gene056257:intron 65.0%
! GCTAGAGGTGGCGGTAGAGG+CGG - chr1.3:76919074-76919093 MS.gene056257:intron 65.0%
!! ACAGGCCGTGGTGGTTCTGG+TGG - chr1.3:76918954-76918973 MS.gene056257:intron 65.0%
!! GCCGTGGTGGTTCTGGTGGA+GGG - chr1.3:76918958-76918977 MS.gene056257:intron 65.0%
AGAGGCGGAGGAGGCAGAGG+AGG - chr1.3:76919089-76919108 MS.gene056257:intron 70.0%
GGAGGAGGCAGAGGAGGACG+TGG - chr1.3:76919095-76919114 MS.gene056257:intron 70.0%
GGAGGCAGAGGAGGACGTGG+AGG - chr1.3:76919098-76919117 MS.gene056257:intron 70.0%
GGCAGAGGAGGACGTGGAGG+AGG - chr1.3:76919101-76919120 MS.gene056257:intron 70.0%
GGTAGAGGCGGAGGAGGCAG+AGG - chr1.3:76919086-76919105 MS.gene056257:intron 70.0%
! AGAGGTGGCGGTAGAGGCGG+AGG - chr1.3:76919077-76919096 MS.gene056257:intron 70.0%
!! CGTGGTGGCGGAAGAGGTGG+TGG - chr1.3:76919125-76919144 MS.gene056257:intron 70.0%
!! GGCCGTGGTGGTTCTGGTGG+AGG - chr1.3:76918957-76918976 MS.gene056257:intron 70.0%
CGTGGAGGAGGCCGTGGTGG+CGG - chr1.3:76919113-76919132 MS.gene056257:intron 75.0%
GGACGTGGAGGAGGCCGTGG+TGG - chr1.3:76919110-76919129 MS.gene056257:intron 75.0%
GGAGGACGTGGAGGAGGCCG+TGG - chr1.3:76919107-76919126 MS.gene056257:intron 75.0%
! GGTGGCGGTAGAGGCGGAGG+AGG - chr1.3:76919080-76919099 MS.gene056257:intron 75.0%
!! GGAGGCCGTGGTGGCGGAAG+AGG - chr1.3:76919119-76919138 MS.gene056257:intron 75.0%
!! GGCCGTGGTGGCGGAAGAGG+TGG - chr1.3:76919122-76919141 MS.gene056257:intron 75.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 76918763 76921632 76918763 ID=MS.gene056257
chr1.3 mRNA 76918763 76921632 76918763 ID=MS.gene056257.t1;Parent=MS.gene056257
chr1.3 exon 76921614 76921632 76921614 ID=MS.gene056257.t1.exon1;Parent=MS.gene056257.t1
chr1.3 CDS 76921614 76921632 76921614 ID=cds.MS.gene056257.t1;Parent=MS.gene056257.t1
chr1.3 exon 76921106 76921437 76921106 ID=MS.gene056257.t1.exon2;Parent=MS.gene056257.t1
chr1.3 CDS 76921106 76921437 76921106 ID=cds.MS.gene056257.t1;Parent=MS.gene056257.t1
chr1.3 exon 76920740 76920835 76920740 ID=MS.gene056257.t1.exon3;Parent=MS.gene056257.t1
chr1.3 CDS 76920740 76920835 76920740 ID=cds.MS.gene056257.t1;Parent=MS.gene056257.t1
chr1.3 exon 76920581 76920658 76920581 ID=MS.gene056257.t1.exon4;Parent=MS.gene056257.t1
chr1.3 CDS 76920581 76920658 76920581 ID=cds.MS.gene056257.t1;Parent=MS.gene056257.t1
chr1.3 exon 76920304 76920480 76920304 ID=MS.gene056257.t1.exon5;Parent=MS.gene056257.t1
chr1.3 CDS 76920304 76920480 76920304 ID=cds.MS.gene056257.t1;Parent=MS.gene056257.t1
chr1.3 exon 76919254 76919322 76919254 ID=MS.gene056257.t1.exon6;Parent=MS.gene056257.t1
chr1.3 CDS 76919254 76919322 76919254 ID=cds.MS.gene056257.t1;Parent=MS.gene056257.t1
chr1.3 exon 76918763 76918939 76918763 ID=MS.gene056257.t1.exon7;Parent=MS.gene056257.t1
chr1.3 CDS 76918763 76918939 76918763 ID=cds.MS.gene056257.t1;Parent=MS.gene056257.t1
Gene Sequence

>MS.gene056257

ATGGCTCCTCCTGTTCGAGGTAACAGAACACGTTAACCATCCTTGTTCGAATTAGAGTTTATTGATGATGCTTTTGTTTACCTTTATTTGTTAAAATCAAATGGGTTTACGCTAATTTGCTCAAAAGAATGATTTTGCTTGTTTTATGAACTATATAGTGATTTTTGTTGATATTGTTGCGTTGAATTTGTACAGGCCGTGGTGGTTCTGGTGGAGGGTTCAGAGGAGGAAGGGGTGGTGATAGAGGAGGTAGAGGAGGTGGGAGAGGTGGTTTTGGAGGACGAGGAGGAGATAGAGGTACCCCTTTCAAGGCTAGAGGTGGCGGTAGAGGCGGAGGAGGCAGAGGAGGACGTGGAGGAGGCCGTGGTGGCGGAAGAGGTGGTGGAATGAAGGGAGGAAGCAAGGTTATTGTTGAACCCCATAGACATGAGGGTATTTTCATTGCTAAGGGTAAAGAAGATGCTCTTGTCACTAAGAATCTTGTTCCTGGAGAAGCTGTTTACAATGAGAAGAGGGTTACCGTGCAGGTATTTCCTTTCTCATCCTTGGATGTTTGTGCTTTGAATTTATTTAGCTTTTTTTAAATTAGTAGCTGTCGATTGAGTTTAACTTTCATGTTTATGTGTTGCAATCAATCATTTTGTTCCTATTTTACTGGACAATAACATCTCTTTTACTTTACAAATCTTGCAAAATATTTTTCTGAATGTGATATTTTTTTTCAAGATTTCAGTGTGTATCAGTCATGTTATTCTATTTAATAGTGGCATGACAATTTTGTGACATATTTTCTGCAGAATGAGGATGGTACTAAGACAGAGTATAGAATTTGGAACCCTTTCCGTTCTAAGTTGGCAGCTGCTGTCCTTGGTGGTGTCGACAATATATGGATTGTAAGTTGCTTCATTTTTCTGTAACATTACACTGTCCTTTAAATACATTATATTGACATCTTAATTTTGGTTTTTATCTAGAAACCTGGCGCTAAAGTCCTTTACCTAGGAGCTGCTTCTGGAACAACTGTGTCTCATGTGTCTGATATTGTTGGTCCTGTAAGTATTAGTTCAACTTGGTTGATTTTTTTTTTCTTCTTCCAACATATGTATGTTTTGTGTTTGAGGCTGATTAGAATATCATGTTCTGTTTATGTAGACTGGAGTTGTGTATGCAGTAGAATTCTCCCATCGAAGTGGGCGTGACTTGGTCAATATGGCCAAGAAGCGTACTAATGTTATACCAATTATTGAAGATGCTAGACATCCCGCCAAGTACAGAATGTTGGTTGGCATGGTAGATGTGATATTTTCTGATGTTGCTCAGCCTGATCAGGTGTGGTTTAATTTTTCACTCTTTTTTATGTTAAGAGTACTAGCTATATATTTTTAACTCTCATGATAGTACCATTCACTTTTCTACTAATGCATAACATTAATCTCTACTATGTCATTGTAGTAATCTATTTACTGATTTAACATGTCTTGATGGAATGCATAATTTGTTTATTATTGTTTATTTCAAAGTGTAAAATGTAAAATGTTTTGGTTACTACAACATCGGTGCATGTGATGAGTTACTCGGATTCCCCTTCAAGACTTCTTGGATGATGTAGACCCGGGATTCTGATGCACATATTTTGGTCTTTTTCTTTATATTGTTTTACTAAAAACTAATACTGTATTTTAAATCCTGTTTTGTTTATAAATTTTCGTTTCCAATTTTGTTTATAAATTTTCATTTCAAAGTGTAAAATGTTTTGATCACTACATCAGTGCATGTGATGAGTTACTCGGATTCCCCTTCAAGACTTCTTGGATGATGTAGACCCGAGATTCTGATGCACATCAATTTTTTTTTTTCTCTCTCTATTTATCTATATTGTTTTATAATGTTAAGAACAGGATTGGGGGCAGTAATGACTTGTTTAGGCACATGGTTTTTGTTTCAGATTCCCTTTTTTTTTTCCAGTTGAGCCTAATTTATTTTAATGATTTTCAGATTTTTAATTTGTTAACTTTTTGGTGTTTGTTTTCTATGAATGAATTTGATCGAAATGTGTTGTATATATGATGTTTATTAAATAGTGGTGGCTTGAAACACCTTGCAGTCTCAAAGTCATTTTTGGTTTGCGTTTCCGTATCTTGCATTATATCCTTGATTGTTGATTTGCAATCTGGATTTTTATTTGTTACTTTTGATGTCTGTTTGTTTTTAATAAATAAGTGTAAGTGTTAATGTTAACCAAATAGCAGTGGGACGAATCTCCATGTATTCTACGTGTCAGTGTTGATTATACTATGTTGATATTTGCAGGCAAGAATTTTAGGTCTGAATGCTTCATATTATCTCAAAGCTGGAGGACACTTTGTTATTTCTATCAAGGTTTGTTCAGAAATCTATTGTATTAAACCAGTTTCTTGTTTTTTAAAGCTTACTTTCTATAGGAATCTTGGAAAACAATCCGTATTTTTTTGTTATGCATTACTTCAATAACAATAAACCATGGGAAAATGAGGTTAGTATTTGGCGTGTGCTCATTTTGACCTTATAACTTCATTGGATAGATAAAATCCCTTCAAACCTTTGTAAAATGGTGAATGAATTATGTCAATGTTGATGCTTGCTTGGCTTTGAATTAAGTTTAAATTTTAATTTTTTGTATTGGTTTCTAAATCAATTTTATTTTGTATTTGTAGGCCAATTGTATTGATTCCACAGTTCCAGCTGAGGCAGTATTCAGCGCTGAGGTGAACAAGTTGAAAGCTGATCAATTTAAGCCAATGGAGCAAGTGACTCTTGAACCATTTGAGAGGGACCATGCTTGTGTTGTTGGTGGCTATAGAGTGCCCAAGAAGAAAAAAGATGCCGAGTAG

Protein sequence

>MS.gene056257.t1

MAPPVRGRGGSGGGFRGGRGGDRGGRGGGRGGFGGRGGDRGTPFKARGGGRGGGGRGGRGGGRGGGRGGGMKGGSKVIVEPHRHEGIFIAKGKEDALVTKNLVPGEAVYNEKRVTVQNEDGTKTEYRIWNPFRSKLAAAVLGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKAGGHFVISIKANCIDSTVPAEAVFSAEVNKLKADQFKPMEQVTLEPFERDHACVVGGYRVPKKKKDAE