Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35160.t1 | RHN40820.1 | 41.1 | 141 | 78 | 2 | 6 | 146 | 11 | 146 | 9.80E-24 | 120.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35160.t1 | A0A396GIK5 | 41.1 | 141 | 78 | 2 | 6 | 146 | 11 | 146 | 7.1e-24 | 120.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050026 | MS.gene35160 | 0.803278 | 3.76E-49 | -1.69E-46 |
MS.gene052447 | MS.gene35160 | 0.858623 | 7.26E-63 | -1.69E-46 |
MS.gene052582 | MS.gene35160 | 0.803728 | 3.04E-49 | -1.69E-46 |
MS.gene052584 | MS.gene35160 | 0.810729 | 9.97E-51 | -1.69E-46 |
MS.gene053082 | MS.gene35160 | 0.803698 | 3.08E-49 | -1.69E-46 |
MS.gene05415 | MS.gene35160 | 0.808086 | 3.68E-50 | -1.69E-46 |
MS.gene05423 | MS.gene35160 | 0.808714 | 2.70E-50 | -1.69E-46 |
MS.gene055952 | MS.gene35160 | 0.813751 | 2.18E-51 | -1.69E-46 |
MS.gene059458 | MS.gene35160 | 0.834033 | 3.79E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35160.t1 | MTR_5g004830 | 41.429 | 140 | 71 | 3 | 6 | 142 | 11 | 142 | 3.49e-33 | 115 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 44 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTTCAAACTCGCAGTTATA+CGG | 0.304728 | 4.4:-19272966 | None:intergenic |
TGGGAGGTGCTGATTCATTC+TGG | 0.307310 | 4.4:+19271449 | MS.gene35160:CDS |
CTTCTCTGCATCAACCTTAC+TGG | 0.321088 | 4.4:-19271306 | None:intergenic |
GTTTAAGATGGACAGTAATC+CGG | 0.386700 | 4.4:+19271798 | MS.gene35160:CDS |
TACATTTGTTGAAGCGAGTA+AGG | 0.420870 | 4.4:+19271753 | MS.gene35160:CDS |
AGACATGGAGGAACCGGTAT+TGG | 0.457153 | 4.4:-19271407 | None:intergenic |
TGAATGTTCGAACAAATTCA+TGG | 0.458298 | 4.4:+19271429 | MS.gene35160:CDS |
CGAATTCCATTCCACATCAA+TGG | 0.458515 | 4.4:+19271589 | MS.gene35160:CDS |
GCAGGTTCTACATCAATTTG+AGG | 0.461169 | 4.4:-19271368 | None:intergenic |
TGACAGATTGTTGTTTAAGA+TGG | 0.463808 | 4.4:+19271786 | MS.gene35160:CDS |
ACATTCAGACATGGAGGAAC+CGG | 0.479236 | 4.4:-19271413 | None:intergenic |
AATGTCAGAGTCTCTTTCCC+AGG | 0.481300 | 4.4:-19271625 | None:intergenic |
TTTAAGATGGACAGTAATCC+GGG | 0.497303 | 4.4:+19271799 | MS.gene35160:CDS |
AAAGATCCATTGATGTGGAA+TGG | 0.510519 | 4.4:-19271595 | None:intergenic |
TATGTGCAGAAGAAATTCAT+AGG | 0.511115 | 4.4:+19271718 | MS.gene35160:CDS |
TTCGACGGTGTTGCCTCCAC+CGG | 0.514992 | 4.4:-19272940 | None:intergenic |
ATGCAATATTCGAATGAAGA+AGG | 0.515264 | 4.4:+19271329 | MS.gene35160:CDS |
GGCTCACGGTAATCATCTGC+AGG | 0.521858 | 4.4:-19271386 | None:intergenic |
AAGATGCAGTTGATGCGATC+TGG | 0.525388 | 4.4:+19271668 | MS.gene35160:CDS |
TGCAGAAGAAATTCATAGGA+AGG | 0.530136 | 4.4:+19271722 | MS.gene35160:CDS |
TAGATTACCAGCTTATGAGT+TGG | 0.531267 | 4.4:-19271482 | None:intergenic |
GTAATCAATAACGCCGGTGG+AGG | 0.535659 | 4.4:+19272927 | MS.gene35160:CDS |
TTCTTCTGCACATAATCACC+AGG | 0.548008 | 4.4:-19271709 | None:intergenic |
TTTACGTCCAACTCATAAGC+TGG | 0.553121 | 4.4:+19271475 | MS.gene35160:CDS |
CAGAAGAAATTCATAGGAAG+GGG | 0.562018 | 4.4:+19271724 | MS.gene35160:CDS |
TGATTACCGTGAGCCAATAC+CGG | 0.564459 | 4.4:+19271394 | MS.gene35160:CDS |
AGAAATTCATAGGAAGGGGT+TGG | 0.574152 | 4.4:+19271728 | MS.gene35160:CDS |
GAAGCGAGTAAGGTGAAAGT+TGG | 0.578483 | 4.4:+19271763 | MS.gene35160:CDS |
GCAGAAGAAATTCATAGGAA+GGG | 0.580030 | 4.4:+19271723 | MS.gene35160:CDS |
GAATGTTCGAACAAATTCAT+GGG | 0.580892 | 4.4:+19271430 | MS.gene35160:CDS |
AGAGACTCTGACATTGACAT+TGG | 0.584037 | 4.4:+19271633 | MS.gene35160:CDS |
TTACTGCAGTGAGTCCAGTA+AGG | 0.589344 | 4.4:+19271292 | MS.gene35160:intron |
CACGAAAAGATCCATTGATG+TGG | 0.608405 | 4.4:-19271600 | None:intergenic |
TTTGTTCGAACATTCAGACA+TGG | 0.613761 | 4.4:-19271422 | None:intergenic |
TGAGAATGGCAACATTGAAG+AGG | 0.623240 | 4.4:+19271195 | None:intergenic |
GAGGAACCGGTATTGGCTCA+CGG | 0.632876 | 4.4:-19271400 | None:intergenic |
CAATATTCGAATGAAGAAGG+AGG | 0.651295 | 4.4:+19271332 | MS.gene35160:CDS |
ATTGTAATCAATAACGCCGG+TGG | 0.653478 | 4.4:+19272924 | MS.gene35160:CDS |
TGTGATATTGATGTTGAACC+TGG | 0.654348 | 4.4:+19271691 | MS.gene35160:CDS |
GCAGTTATACGGTGGTTCGA+CGG | 0.660300 | 4.4:-19272955 | None:intergenic |
GTTCGAACATTCAGACATGG+AGG | 0.688432 | 4.4:-19271419 | None:intergenic |
TGTTCGAACAAATTCATGGG+AGG | 0.689256 | 4.4:+19271433 | MS.gene35160:CDS |
GCAATTGTAATCAATAACGC+CGG | 0.690508 | 4.4:+19272921 | MS.gene35160:CDS |
TCAAACTCGCAGTTATACGG+TGG | 0.708422 | 4.4:-19272963 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTTTATATATAATAAATA+AGG | + | chr4.4:19272068-19272087 | MS.gene35160:intron | 0.0% |
!!! | TATTTTCATCTTTTAAAATA+AGG | - | chr4.4:19272734-19272753 | None:intergenic | 10.0% |
!! | ATAAAACTAACATAAAGTAA+GGG | - | chr4.4:19271516-19271535 | None:intergenic | 15.0% |
!! | TATAAAACTAACATAAAGTA+AGG | - | chr4.4:19271517-19271536 | None:intergenic | 15.0% |
!! | TTAAAAGATGAAAATAGAAA+GGG | + | chr4.4:19272738-19272757 | MS.gene35160:intron | 15.0% |
!! | TTTAAAAGATGAAAATAGAA+AGG | + | chr4.4:19272737-19272756 | MS.gene35160:intron | 15.0% |
!!! | AAAAGCTAAAAAAATGTTTT+TGG | + | chr4.4:19272329-19272348 | MS.gene35160:intron | 15.0% |
!!! | AAAGTTGATTATTAATGAAA+TGG | + | chr4.4:19272137-19272156 | MS.gene35160:intron | 15.0% |
!!! | TATTTTAAACTTTGTAGTAA+TGG | + | chr4.4:19271970-19271989 | MS.gene35160:intron | 15.0% |
!!! | TTTTCTAATTTATTAATTCC+AGG | - | chr4.4:19272532-19272551 | None:intergenic | 15.0% |
!! | ACGAAAAGACTTAAATATAT+AGG | + | chr4.4:19272200-19272219 | MS.gene35160:intron | 20.0% |
!! | TAAAAGATGAAAATAGAAAG+GGG | + | chr4.4:19272739-19272758 | MS.gene35160:intron | 20.0% |
!! | TAATTGCTATGTTAAATTTC+TGG | + | chr4.4:19271822-19271841 | MS.gene35160:intron | 20.0% |
!! | TATTATGAATAAGAATAGCA+TGG | + | chr4.4:19272092-19272111 | MS.gene35160:intron | 20.0% |
!! | TTGATTATTAATGAAATGGT+TGG | + | chr4.4:19272141-19272160 | MS.gene35160:intron | 20.0% |
! | AAAAAGAATAAGAAGATGAG+AGG | - | chr4.4:19272837-19272856 | None:intergenic | 25.0% |
! | AAAAGATGAAAATAGAAAGG+GGG | + | chr4.4:19272740-19272759 | MS.gene35160:intron | 25.0% |
! | AAGACTTAAATATATAGGAG+TGG | + | chr4.4:19272205-19272224 | MS.gene35160:intron | 25.0% |
! | AATTTAACATAGCAATTACC+CGG | - | chr4.4:19271820-19271839 | None:intergenic | 25.0% |
! | ACCTGTAAATATAGTGAATT+TGG | + | chr4.4:19272353-19272372 | MS.gene35160:intron | 25.0% |
! | AGTATCAAGTCAACATAAAA+TGG | - | chr4.4:19271263-19271282 | None:intergenic | 25.0% |
! | CCTGTAAATATAGTGAATTT+GGG | + | chr4.4:19272354-19272373 | MS.gene35160:intron | 25.0% |
! | GTATTAAGTACTAAAAGATC+AGG | + | chr4.4:19271920-19271939 | MS.gene35160:intron | 25.0% |
! | TACAGGAAGAAGAATAATAA+TGG | - | chr4.4:19272788-19272807 | None:intergenic | 25.0% |
! | TGAAGAGGTAATAAAGTTTA+TGG | + | chr4.4:19271210-19271229 | MS.gene35160:intron | 25.0% |
! | TGATATATAAAACTGGTAAG+TGG | + | chr4.4:19271849-19271868 | MS.gene35160:intron | 25.0% |
! | TGGAAAGTGATATATAAAAC+TGG | + | chr4.4:19271842-19271861 | MS.gene35160:intron | 25.0% |
!!! | TTGATGATTCAACACATTTT+CGG | + | chr4.4:19272460-19272479 | MS.gene35160:intron | 25.0% |
!!! | TTGTTTTTTAAAATAGCCTC+TGG | + | chr4.4:19272427-19272446 | MS.gene35160:intron | 25.0% |
ATGCAATATTCGAATGAAGA+AGG | + | chr4.4:19271329-19271348 | MS.gene35160:CDS | 30.0% | |
CCCAAATTCACTATATTTAC+AGG | - | chr4.4:19272357-19272376 | None:intergenic | 30.0% | |
GAATGTTCGAACAAATTCAT+GGG | + | chr4.4:19271430-19271449 | MS.gene35160:CDS | 30.0% | |
TATGTGCAGAAGAAATTCAT+AGG | + | chr4.4:19271718-19271737 | MS.gene35160:CDS | 30.0% | |
TGAATGTTCGAACAAATTCA+TGG | + | chr4.4:19271429-19271448 | MS.gene35160:CDS | 30.0% | |
TTTCTTCTTATTCACAATCC+TGG | + | chr4.4:19272854-19272873 | MS.gene35160:intron | 30.0% | |
!! | AATATAGTGAATTTGGGTTG+TGG | + | chr4.4:19272360-19272379 | MS.gene35160:intron | 30.0% |
!! | TGACAGATTGTTGTTTAAGA+TGG | + | chr4.4:19271786-19271805 | MS.gene35160:CDS | 30.0% |
AAAGATCCATTGATGTGGAA+TGG | - | chr4.4:19271598-19271617 | None:intergenic | 35.0% | |
AAAGGGGGAGATTAAAAATG+AGG | + | chr4.4:19272755-19272774 | MS.gene35160:intron | 35.0% | |
AACCAATCAAGATTGTGTTG+TGG | + | chr4.4:19272884-19272903 | MS.gene35160:intron | 35.0% | |
AAGGGGGAGATTAAAAATGA+GGG | + | chr4.4:19272756-19272775 | MS.gene35160:intron | 35.0% | |
ACTTCAAACTCGCAGTTATA+CGG | - | chr4.4:19272969-19272988 | None:intergenic | 35.0% | |
CAATATTCGAATGAAGAAGG+AGG | + | chr4.4:19271332-19271351 | MS.gene35160:CDS | 35.0% | |
CAGAAGAAATTCATAGGAAG+GGG | + | chr4.4:19271724-19271743 | MS.gene35160:CDS | 35.0% | |
CCACTCATAAAGAAAAGAGA+TGG | + | chr4.4:19272291-19272310 | MS.gene35160:intron | 35.0% | |
GATTGTACAAAACTGTCAAG+TGG | + | chr4.4:19272637-19272656 | MS.gene35160:intron | 35.0% | |
GCAATTGTAATCAATAACGC+CGG | + | chr4.4:19272921-19272940 | MS.gene35160:CDS | 35.0% | |
GCAGAAGAAATTCATAGGAA+GGG | + | chr4.4:19271723-19271742 | MS.gene35160:CDS | 35.0% | |
TAGATTACCAGCTTATGAGT+TGG | - | chr4.4:19271485-19271504 | None:intergenic | 35.0% | |
TGCAGAAGAAATTCATAGGA+AGG | + | chr4.4:19271722-19271741 | MS.gene35160:CDS | 35.0% | |
TGTGATATTGATGTTGAACC+TGG | + | chr4.4:19271691-19271710 | MS.gene35160:CDS | 35.0% | |
TTTGTTCGAACATTCAGACA+TGG | - | chr4.4:19271425-19271444 | None:intergenic | 35.0% | |
! | CCATCTCTTTTCTTTATGAG+TGG | - | chr4.4:19272294-19272313 | None:intergenic | 35.0% |
! | GATCAGGTTGCTTAAGATAA+TGG | + | chr4.4:19271936-19271955 | MS.gene35160:intron | 35.0% |
! | GTTTAAGATGGACAGTAATC+CGG | + | chr4.4:19271798-19271817 | MS.gene35160:CDS | 35.0% |
! | TACATTTGTTGAAGCGAGTA+AGG | + | chr4.4:19271753-19271772 | MS.gene35160:CDS | 35.0% |
! | TTTAAGATGGACAGTAATCC+GGG | + | chr4.4:19271799-19271818 | MS.gene35160:CDS | 35.0% |
!!! | CTTGATTGGTTTTGATTTCC+AGG | - | chr4.4:19272875-19272894 | None:intergenic | 35.0% |
ACTGGTAAGTGGTGTTTGTT+TGG | + | chr4.4:19271860-19271879 | MS.gene35160:intron | 40.0% | |
ACTGTCAAGTGGCATTTACT+TGG | + | chr4.4:19272648-19272667 | MS.gene35160:intron | 40.0% | |
AGAAATTCATAGGAAGGGGT+TGG | + | chr4.4:19271728-19271747 | MS.gene35160:CDS | 40.0% | |
AGAAGATGAGAGGAGAAACA+AGG | - | chr4.4:19272827-19272846 | None:intergenic | 40.0% | |
AGAGACTCTGACATTGACAT+TGG | + | chr4.4:19271633-19271652 | MS.gene35160:CDS | 40.0% | |
ATAGGAGTGGATGATGAATG+TGG | + | chr4.4:19272218-19272237 | MS.gene35160:intron | 40.0% | |
ATTGGACAAAACTGTCAACG+TGG | + | chr4.4:19272500-19272519 | MS.gene35160:intron | 40.0% | |
ATTGTAATCAATAACGCCGG+TGG | + | chr4.4:19272924-19272943 | MS.gene35160:CDS | 40.0% | |
CACGAAAAGATCCATTGATG+TGG | - | chr4.4:19271603-19271622 | None:intergenic | 40.0% | |
CGAATTCCATTCCACATCAA+TGG | + | chr4.4:19271589-19271608 | MS.gene35160:CDS | 40.0% | |
GAGGAAGAGAAAACGATTAC+AGG | - | chr4.4:19272805-19272824 | None:intergenic | 40.0% | |
GCAGGTTCTACATCAATTTG+AGG | - | chr4.4:19271371-19271390 | None:intergenic | 40.0% | |
GTCCACAACACAATCTTGAT+TGG | - | chr4.4:19272889-19272908 | None:intergenic | 40.0% | |
TGTTCGAACAAATTCATGGG+AGG | + | chr4.4:19271433-19271452 | MS.gene35160:CDS | 40.0% | |
TTCTTCTGCACATAATCACC+AGG | - | chr4.4:19271712-19271731 | None:intergenic | 40.0% | |
TTTACGTCCAACTCATAAGC+TGG | + | chr4.4:19271475-19271494 | MS.gene35160:CDS | 40.0% | |
TTTGTTTGGAGACAGTGTGT+TGG | + | chr4.4:19271874-19271893 | MS.gene35160:intron | 40.0% | |
! | AATGGATCTTTTCGTGAACC+TGG | + | chr4.4:19271607-19271626 | MS.gene35160:CDS | 40.0% |
! | ATGGATCTTTTCGTGAACCT+GGG | + | chr4.4:19271608-19271627 | MS.gene35160:CDS | 40.0% |
AATGTCAGAGTCTCTTTCCC+AGG | - | chr4.4:19271628-19271647 | None:intergenic | 45.0% | |
ACATTCAGACATGGAGGAAC+CGG | - | chr4.4:19271416-19271435 | None:intergenic | 45.0% | |
AGATGAGAGGAGAAACAAGG+AGG | - | chr4.4:19272824-19272843 | None:intergenic | 45.0% | |
CATCAAGAAAGTGAGTCCAG+AGG | - | chr4.4:19272446-19272465 | None:intergenic | 45.0% | |
CTTCTCTGCATCAACCTTAC+TGG | - | chr4.4:19271309-19271328 | None:intergenic | 45.0% | |
GAAGCGAGTAAGGTGAAAGT+TGG | + | chr4.4:19271763-19271782 | MS.gene35160:CDS | 45.0% | |
GTTCGAACATTCAGACATGG+AGG | - | chr4.4:19271422-19271441 | None:intergenic | 45.0% | |
TCAAACTCGCAGTTATACGG+TGG | - | chr4.4:19272966-19272985 | None:intergenic | 45.0% | |
TGATTACCGTGAGCCAATAC+CGG | + | chr4.4:19271394-19271413 | MS.gene35160:CDS | 45.0% | |
TTACTGCAGTGAGTCCAGTA+AGG | + | chr4.4:19271292-19271311 | MS.gene35160:intron | 45.0% | |
! | AAGATGCAGTTGATGCGATC+TGG | + | chr4.4:19271668-19271687 | MS.gene35160:CDS | 45.0% |
AGACATGGAGGAACCGGTAT+TGG | - | chr4.4:19271410-19271429 | None:intergenic | 50.0% | |
CTGTCAACGTGGCATTTACC+TGG | + | chr4.4:19272511-19272530 | MS.gene35160:intron | 50.0% | |
GCAGTTATACGGTGGTTCGA+CGG | - | chr4.4:19272958-19272977 | None:intergenic | 50.0% | |
GTAATCAATAACGCCGGTGG+AGG | + | chr4.4:19272927-19272946 | MS.gene35160:CDS | 50.0% | |
! | TCAACACATTTTCGGCCACG+CGG | + | chr4.4:19272468-19272487 | MS.gene35160:intron | 50.0% |
! | TCAACACATTTTCGGCCACG+TGG | + | chr4.4:19272468-19272487 | MS.gene35160:intron | 50.0% |
!! | TGAATTTGGGTTGTGGCAGC+TGG | + | chr4.4:19272367-19272386 | MS.gene35160:intron | 50.0% |
!! | TGGGAGGTGCTGATTCATTC+TGG | + | chr4.4:19271449-19271468 | MS.gene35160:CDS | 50.0% |
GGCTCACGGTAATCATCTGC+AGG | - | chr4.4:19271389-19271408 | None:intergenic | 55.0% | |
TCCAATCAGCAAGTGCCACG+TGG | - | chr4.4:19272486-19272505 | None:intergenic | 55.0% | |
! | TACAATCAGCAAGTGCCGCG+TGG | - | chr4.4:19272624-19272643 | None:intergenic | 55.0% |
!! | GAGGAACCGGTATTGGCTCA+CGG | - | chr4.4:19271403-19271422 | None:intergenic | 55.0% |
! | GCCACGTGGCACTTGCTGAT+TGG | + | chr4.4:19272482-19272501 | MS.gene35160:intron | 60.0% |
!! | TTCGACGGTGTTGCCTCCAC+CGG | - | chr4.4:19272943-19272962 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 19271200 | 19273001 | 19271200 | ID=MS.gene35160 |
chr4.4 | mRNA | 19271200 | 19273001 | 19271200 | ID=MS.gene35160.t1;Parent=MS.gene35160 |
chr4.4 | exon | 19271200 | 19271216 | 19271200 | ID=MS.gene35160.t1.exon1;Parent=MS.gene35160.t1 |
chr4.4 | CDS | 19271200 | 19271216 | 19271200 | ID=cds.MS.gene35160.t1;Parent=MS.gene35160.t1 |
chr4.4 | exon | 19271301 | 19271496 | 19271301 | ID=MS.gene35160.t1.exon2;Parent=MS.gene35160.t1 |
chr4.4 | CDS | 19271301 | 19271496 | 19271301 | ID=cds.MS.gene35160.t1;Parent=MS.gene35160.t1 |
chr4.4 | exon | 19271589 | 19271820 | 19271589 | ID=MS.gene35160.t1.exon3;Parent=MS.gene35160.t1 |
chr4.4 | CDS | 19271589 | 19271820 | 19271589 | ID=cds.MS.gene35160.t1;Parent=MS.gene35160.t1 |
chr4.4 | exon | 19272919 | 19273001 | 19272919 | ID=MS.gene35160.t1.exon4;Parent=MS.gene35160.t1 |
chr4.4 | CDS | 19272919 | 19273001 | 19272919 | ID=cds.MS.gene35160.t1;Parent=MS.gene35160.t1 |
Gene Sequence |
Protein sequence |