Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35171.t1 | XP_013457360.1 | 98.5 | 329 | 5 | 0 | 1 | 329 | 459 | 787 | 4.30E-182 | 647.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35171.t1 | Q9SA05 | 70.2 | 326 | 89 | 3 | 9 | 329 | 474 | 796 | 1.8e-128 | 460.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35171.t1 | A0A072UPX3 | 98.5 | 329 | 5 | 0 | 1 | 329 | 459 | 787 | 3.1e-182 | 647.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059367 | MS.gene35171 | 0.807871 | 4.09E-50 | -1.69E-46 |
| MS.gene059368 | MS.gene35171 | 0.829333 | 5.46E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35171.t1 | MTR_4g094660 | 98.480 | 329 | 5 | 0 | 1 | 329 | 459 | 787 | 0.0 | 673 |
| MS.gene35171.t1 | MTR_4g094660 | 98.480 | 329 | 5 | 0 | 1 | 329 | 273 | 601 | 0.0 | 672 |
| MS.gene35171.t1 | MTR_2g438150 | 79.104 | 335 | 60 | 5 | 1 | 329 | 459 | 789 | 0.0 | 536 |
| MS.gene35171.t1 | MTR_2g438150 | 78.507 | 335 | 62 | 5 | 1 | 329 | 459 | 789 | 0.0 | 531 |
| MS.gene35171.t1 | MTR_2g438160 | 86.335 | 161 | 22 | 0 | 1 | 161 | 459 | 619 | 4.38e-96 | 297 |
| MS.gene35171.t1 | MTR_6g033165 | 40.909 | 352 | 182 | 3 | 1 | 329 | 471 | 819 | 9.46e-86 | 275 |
| MS.gene35171.t1 | MTR_6g007697 | 39.888 | 356 | 168 | 6 | 1 | 329 | 440 | 776 | 8.72e-82 | 263 |
| MS.gene35171.t1 | MTR_5g070670 | 39.118 | 340 | 190 | 4 | 3 | 329 | 514 | 849 | 1.31e-79 | 259 |
| MS.gene35171.t1 | MTR_5g034500 | 39.003 | 341 | 196 | 4 | 1 | 329 | 442 | 782 | 2.63e-78 | 254 |
| MS.gene35171.t1 | MTR_2g008820 | 39.275 | 331 | 192 | 3 | 8 | 329 | 519 | 849 | 4.88e-78 | 255 |
| MS.gene35171.t1 | MTR_5g071827 | 39.339 | 333 | 182 | 5 | 1 | 329 | 350 | 666 | 1.52e-77 | 250 |
| MS.gene35171.t1 | MTR_5g071860 | 39.339 | 333 | 182 | 5 | 1 | 329 | 438 | 754 | 7.93e-77 | 250 |
| MS.gene35171.t1 | MTR_3g094090 | 39.104 | 335 | 172 | 5 | 26 | 329 | 276 | 609 | 2.02e-74 | 240 |
| MS.gene35171.t1 | MTR_8g063840 | 38.841 | 345 | 184 | 6 | 3 | 329 | 505 | 840 | 3.25e-73 | 242 |
| MS.gene35171.t1 | MTR_3g094090 | 39.104 | 335 | 172 | 5 | 26 | 329 | 461 | 794 | 3.97e-73 | 241 |
| MS.gene35171.t1 | MTR_8g099090 | 39.607 | 356 | 181 | 6 | 3 | 329 | 442 | 792 | 4.61e-71 | 235 |
| MS.gene35171.t1 | MTR_5g071630 | 36.937 | 333 | 181 | 6 | 1 | 329 | 418 | 725 | 3.11e-66 | 221 |
| MS.gene35171.t1 | MTR_7g108480 | 33.945 | 327 | 183 | 3 | 1 | 327 | 478 | 771 | 7.74e-65 | 218 |
| MS.gene35171.t1 | MTR_4g099260 | 35.569 | 343 | 204 | 5 | 3 | 329 | 474 | 815 | 8.05e-63 | 213 |
| MS.gene35171.t1 | MTR_8g107510 | 34.561 | 353 | 198 | 7 | 1 | 326 | 433 | 779 | 1.31e-61 | 209 |
| MS.gene35171.t1 | MTR_8g088200 | 32.853 | 347 | 205 | 5 | 3 | 329 | 444 | 782 | 3.89e-54 | 189 |
| MS.gene35171.t1 | MTR_8g063900 | 30.816 | 331 | 164 | 6 | 1 | 327 | 474 | 743 | 3.06e-53 | 186 |
| MS.gene35171.t1 | MTR_5g034590 | 47.799 | 159 | 83 | 0 | 1 | 159 | 101 | 259 | 7.01e-53 | 178 |
| MS.gene35171.t1 | MTR_8g022130 | 32.132 | 333 | 188 | 7 | 3 | 329 | 466 | 766 | 7.26e-53 | 186 |
| MS.gene35171.t1 | MTR_2g438170 | 54.321 | 81 | 27 | 5 | 192 | 266 | 1 | 77 | 3.68e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35171.t1 | AT2G35060 | 70.606 | 330 | 92 | 3 | 1 | 329 | 467 | 792 | 3.50e-168 | 488 |
| MS.gene35171.t1 | AT2G35060 | 70.606 | 330 | 92 | 3 | 1 | 329 | 467 | 792 | 3.50e-168 | 488 |
| MS.gene35171.t1 | AT2G35060 | 70.606 | 330 | 92 | 3 | 1 | 329 | 467 | 792 | 3.50e-168 | 488 |
| MS.gene35171.t1 | AT2G35060 | 70.606 | 330 | 92 | 3 | 1 | 329 | 468 | 793 | 3.72e-168 | 488 |
| MS.gene35171.t1 | AT1G31120 | 72.619 | 336 | 80 | 6 | 1 | 329 | 466 | 796 | 6.96e-164 | 477 |
| MS.gene35171.t1 | AT4G19960 | 62.798 | 336 | 107 | 2 | 9 | 329 | 254 | 586 | 2.92e-139 | 407 |
| MS.gene35171.t1 | AT4G19960 | 62.798 | 336 | 107 | 2 | 9 | 329 | 475 | 807 | 3.34e-136 | 406 |
| MS.gene35171.t1 | AT4G19960 | 62.798 | 336 | 107 | 2 | 9 | 329 | 491 | 823 | 4.11e-136 | 406 |
| MS.gene35171.t1 | AT4G19960 | 62.798 | 336 | 107 | 2 | 9 | 329 | 501 | 833 | 4.57e-136 | 406 |
| MS.gene35171.t1 | AT3G02050 | 42.373 | 354 | 177 | 4 | 1 | 329 | 438 | 789 | 1.09e-85 | 274 |
| MS.gene35171.t1 | AT4G33530 | 41.543 | 337 | 187 | 5 | 3 | 329 | 291 | 627 | 1.19e-83 | 265 |
| MS.gene35171.t1 | AT4G33530 | 41.543 | 337 | 187 | 5 | 3 | 329 | 519 | 855 | 5.97e-82 | 265 |
| MS.gene35171.t1 | AT1G60160 | 37.538 | 333 | 195 | 4 | 3 | 329 | 502 | 827 | 6.99e-79 | 257 |
| MS.gene35171.t1 | AT2G40540 | 39.496 | 357 | 185 | 6 | 3 | 329 | 439 | 794 | 8.39e-79 | 256 |
| MS.gene35171.t1 | AT2G40540 | 39.496 | 357 | 185 | 6 | 3 | 329 | 439 | 794 | 8.39e-79 | 256 |
| MS.gene35171.t1 | AT2G40540 | 39.496 | 357 | 185 | 6 | 3 | 329 | 439 | 794 | 8.39e-79 | 256 |
| MS.gene35171.t1 | AT2G40540 | 39.496 | 357 | 185 | 6 | 3 | 329 | 439 | 794 | 8.39e-79 | 256 |
| MS.gene35171.t1 | AT2G40540 | 39.496 | 357 | 185 | 6 | 3 | 329 | 439 | 794 | 8.39e-79 | 256 |
| MS.gene35171.t1 | AT5G09400 | 40.762 | 341 | 188 | 4 | 3 | 329 | 518 | 858 | 9.50e-79 | 257 |
| MS.gene35171.t1 | AT4G23640 | 38.810 | 353 | 191 | 5 | 1 | 329 | 424 | 775 | 6.26e-76 | 248 |
| MS.gene35171.t1 | AT5G14880 | 40.580 | 345 | 185 | 5 | 1 | 329 | 441 | 781 | 5.59e-75 | 246 |
| MS.gene35171.t1 | AT1G70300 | 36.207 | 348 | 197 | 4 | 1 | 329 | 441 | 782 | 1.17e-68 | 229 |
| MS.gene35171.t1 | AT4G13420 | 34.462 | 325 | 205 | 2 | 3 | 327 | 467 | 783 | 1.51e-62 | 212 |
| MS.gene35171.t1 | AT2G30070 | 50.000 | 186 | 93 | 0 | 1 | 186 | 318 | 503 | 4.99e-61 | 205 |
| MS.gene35171.t1 | AT2G30070 | 38.961 | 77 | 47 | 0 | 253 | 329 | 516 | 592 | 1.49e-12 | 68.9 |
| MS.gene35171.t1 | AT2G30070 | 50.000 | 186 | 93 | 0 | 1 | 186 | 438 | 623 | 1.88e-60 | 206 |
| MS.gene35171.t1 | AT2G30070 | 38.961 | 77 | 47 | 0 | 253 | 329 | 636 | 712 | 1.66e-12 | 68.6 |
Find 78 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAGGTATCTCTCTTCTTC+CGG | 0.262164 | 4.4:-19144976 | None:intergenic |
| CTAACAGTGATATTCATATT+TGG | 0.264550 | 4.4:-19145282 | None:intergenic |
| GCTGGGGTGGTTCACATATT+AGG | 0.271225 | 4.4:+19145372 | MS.gene35171:CDS |
| ATTATATATATGCATTTCTT+AGG | 0.280181 | 4.4:+19145451 | MS.gene35171:CDS |
| TCAGTTGAATACAGTTTATA+TGG | 0.294604 | 4.4:+19145156 | MS.gene35171:CDS |
| TTCTTCCGGGACGGTGTAAA+CGG | 0.320283 | 4.4:-19144962 | None:intergenic |
| CTCGGGCTTGGCCCAAGTTT+AGG | 0.337026 | 4.4:+19144805 | MS.gene35171:CDS |
| CAAGGTATCTCTCTTCTTCC+GGG | 0.346404 | 4.4:-19144975 | None:intergenic |
| TTGAATAACTGCAGGGATGC+TGG | 0.348315 | 4.4:+19145354 | MS.gene35171:CDS |
| CGAAAGATGTGGTAATTCTT+AGG | 0.358981 | 4.4:-19145012 | None:intergenic |
| ATTATGTTTGTCTGGCATTA+CGG | 0.372759 | 4.4:+19144727 | MS.gene35171:CDS |
| GTCTCGATGGCATGGATTCT+CGG | 0.378294 | 4.4:+19144787 | MS.gene35171:CDS |
| TGGGTTCCTCTTGTAATTGC+CGG | 0.384804 | 4.4:+19144691 | MS.gene35171:CDS |
| ATGGCATGGATTCTCGGGCT+TGG | 0.385857 | 4.4:+19144793 | MS.gene35171:CDS |
| TTAGGACTTGTTCGTGTACC+TGG | 0.405042 | 4.4:+19144823 | MS.gene35171:CDS |
| CAAGTTCATCGCCCTCGGTT+TGG | 0.406422 | 4.4:-19145326 | None:intergenic |
| GTGTAGACTAGTCCGATTCC+AGG | 0.417435 | 4.4:-19144841 | None:intergenic |
| ACTCTTCGTCTTTCTTGTGC+AGG | 0.434280 | 4.4:-19145062 | None:intergenic |
| TCTTCCGGGACGGTGTAAAC+GGG | 0.434511 | 4.4:-19144961 | None:intergenic |
| TCTCGATGGCATGGATTCTC+GGG | 0.451131 | 4.4:+19144788 | MS.gene35171:CDS |
| CAAATATGAATATCACTGTT+AGG | 0.464445 | 4.4:+19145283 | MS.gene35171:CDS |
| TTGGCCACTTACTTGACCGC+AGG | 0.482483 | 4.4:-19145307 | None:intergenic |
| CTTGTTCGTGTACCTGGAAT+CGG | 0.484864 | 4.4:+19144829 | MS.gene35171:CDS |
| AGATACCTTGTAAAGAGGAT+TGG | 0.486463 | 4.4:+19144988 | MS.gene35171:CDS |
| TTTCGATGTGTGGCACGGTA+TGG | 0.488737 | 4.4:+19145030 | MS.gene35171:CDS |
| CATTTCTTAGGAAAATATGC+AGG | 0.492742 | 4.4:+19145463 | MS.gene35171:CDS |
| TATTGGTGTGGCGCTGCCAC+TGG | 0.494313 | 4.4:+19144581 | MS.gene35171:CDS |
| TGAATAACTGCAGGGATGCT+GGG | 0.494966 | 4.4:+19145355 | MS.gene35171:CDS |
| AAGAGAGATACCTTGTAAAG+AGG | 0.504738 | 4.4:+19144983 | MS.gene35171:CDS |
| AAATTCAAGTTCATCGCCCT+CGG | 0.506358 | 4.4:-19145331 | None:intergenic |
| TAGGTCCAATCCTCTTTACA+AGG | 0.508685 | 4.4:-19144993 | None:intergenic |
| GTAATCTTCAAAGTCAATCA+AGG | 0.509932 | 4.4:+19144664 | MS.gene35171:CDS |
| CACTTGCTTATCATTGATTG+TGG | 0.513008 | 4.4:+19144621 | MS.gene35171:CDS |
| CAAGCTTAACAAACAGTGAA+AGG | 0.516927 | 4.4:-19145107 | None:intergenic |
| ACACGAACAAGTCCTAAACT+TGG | 0.520151 | 4.4:-19144817 | None:intergenic |
| TCAAAGTCAATCAAGGTGGA+TGG | 0.520473 | 4.4:+19144671 | MS.gene35171:CDS |
| CACAGTTGTGATGGCAAGGA+GGG | 0.523327 | 4.4:+19145398 | MS.gene35171:CDS |
| ATACAGTTTATATGGACAGC+AGG | 0.539689 | 4.4:+19145164 | MS.gene35171:CDS |
| TGTTAAGCTTGAATCTATGA+TGG | 0.539727 | 4.4:+19145119 | MS.gene35171:CDS |
| CATGAGAGTCTCTTAAATGT+TGG | 0.554708 | 4.4:+19145513 | MS.gene35171:CDS |
| ACAACAACAGAATGGATGGC+TGG | 0.560974 | 4.4:-19144916 | None:intergenic |
| AGGCCCTGCGGTCAAGTAAG+TGG | 0.564330 | 4.4:+19145303 | MS.gene35171:CDS |
| ACAGTGATATTCATATTTGG+CGG | 0.564984 | 4.4:-19145279 | None:intergenic |
| CAAAGTCAATCAAGGTGGAT+GGG | 0.571604 | 4.4:+19144672 | MS.gene35171:CDS |
| CAACAGAATGGATGGCTGGT+AGG | 0.574816 | 4.4:-19144912 | None:intergenic |
| TAACTGCAGGGATGCTGGGG+TGG | 0.578720 | 4.4:+19145359 | MS.gene35171:CDS |
| GTGATATTCATATTTGGCGG+CGG | 0.583068 | 4.4:-19145276 | None:intergenic |
| GTATCTCTCTTCTTCCGGGA+CGG | 0.583221 | 4.4:-19144971 | None:intergenic |
| GTCTACACAGAACTTGCAAG+TGG | 0.583444 | 4.4:+19144856 | MS.gene35171:CDS |
| AGAATGGATGGCTGGTAGGT+TGG | 0.583797 | 4.4:-19144908 | None:intergenic |
| CCTTCCCGTTTACACCGTCC+CGG | 0.586257 | 4.4:+19144957 | MS.gene35171:CDS |
| ATTAGGAAACACAGTTGTGA+TGG | 0.587624 | 4.4:+19145389 | MS.gene35171:CDS |
| GAATAACTGCAGGGATGCTG+GGG | 0.589642 | 4.4:+19145356 | MS.gene35171:CDS |
| GAAACACAGTTGTGATGGCA+AGG | 0.591010 | 4.4:+19145394 | MS.gene35171:CDS |
| CAAGTAAGTGGCCAAACCGA+GGG | 0.598214 | 4.4:+19145315 | MS.gene35171:CDS |
| AGTTTATATGGACAGCAGGA+TGG | 0.599955 | 4.4:+19145168 | MS.gene35171:CDS |
| TTACCACATCTTTCGATGTG+TGG | 0.605821 | 4.4:+19145020 | MS.gene35171:CDS |
| TCAAGTAAGTGGCCAAACCG+AGG | 0.608655 | 4.4:+19145314 | MS.gene35171:CDS |
| CACGAACAAGTCCTAAACTT+GGG | 0.614583 | 4.4:-19144816 | None:intergenic |
| TGGCCACTTACTTGACCGCA+GGG | 0.615367 | 4.4:-19145306 | None:intergenic |
| ATAGTAAAGTCTCGATGGCA+TGG | 0.620677 | 4.4:+19144779 | MS.gene35171:CDS |
| AAGCACGACTTCTTCGAATG+TGG | 0.624780 | 4.4:+19145209 | MS.gene35171:CDS |
| AATCAATGATAAGCAAGTGA+AGG | 0.625371 | 4.4:-19144617 | None:intergenic |
| ATTTCTTAGGAAAATATGCA+GGG | 0.625694 | 4.4:+19145464 | MS.gene35171:CDS |
| AACACTCCGGCAATTACAAG+AGG | 0.633389 | 4.4:-19144697 | None:intergenic |
| AATGCATAGTAAAGTCTCGA+TGG | 0.638063 | 4.4:+19144774 | MS.gene35171:CDS |
| AAGCTTGAATCTATGATGGA+AGG | 0.641141 | 4.4:+19145123 | MS.gene35171:CDS |
| ACATCTTTCGATGTGTGGCA+CGG | 0.647935 | 4.4:+19145025 | MS.gene35171:CDS |
| CCGGGACGGTGTAAACGGGA+AGG | 0.648523 | 4.4:-19144957 | None:intergenic |
| AATATCACTGTTAGGCCCTG+CGG | 0.657194 | 4.4:+19145291 | MS.gene35171:CDS |
| ACACAGTTGTGATGGCAAGG+AGG | 0.669872 | 4.4:+19145397 | MS.gene35171:CDS |
| GTGCCACACATCGAAAGATG+TGG | 0.686236 | 4.4:-19145023 | None:intergenic |
| ATCTTCAAAGTCAATCAAGG+TGG | 0.687512 | 4.4:+19144667 | MS.gene35171:CDS |
| GTGATGAAATGAGAAAAGAT+CGG | 0.689117 | 4.4:-19144886 | None:intergenic |
| ATGAAATGAGAAAAGATCGG+TGG | 0.702922 | 4.4:-19144883 | None:intergenic |
| ACATTTAAGAGACTCTCATG+AGG | 0.718347 | 4.4:-19145510 | None:intergenic |
| GATGGCGTGTTGAATAACAA+CGG | 0.731429 | 4.4:+19145186 | MS.gene35171:CDS |
| AGGCGAGTACAAGTATCCAG+TGG | 0.743797 | 4.4:-19144597 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATATATATGCATTTCTT+AGG | + | chr4.4:19145451-19145470 | MS.gene35171:CDS | 15.0% |
| !!! | TTTTTATTATTATGTTTGTC+TGG | + | chr4.4:19144719-19144738 | MS.gene35171:CDS | 15.0% |
| !! | CATAATAATAAAAAACACTC+CGG | - | chr4.4:19144713-19144732 | None:intergenic | 20.0% |
| ! | ATACAAAAACAACAACAGAA+TGG | - | chr4.4:19144927-19144946 | None:intergenic | 25.0% |
| ! | ATTTCTTAGGAAAATATGCA+GGG | + | chr4.4:19145464-19145483 | MS.gene35171:CDS | 25.0% |
| ! | CAAATATGAATATCACTGTT+AGG | + | chr4.4:19145283-19145302 | MS.gene35171:CDS | 25.0% |
| ! | CTAACAGTGATATTCATATT+TGG | - | chr4.4:19145285-19145304 | None:intergenic | 25.0% |
| ! | TCAGTTGAATACAGTTTATA+TGG | + | chr4.4:19145156-19145175 | MS.gene35171:CDS | 25.0% |
| !! | TGAATTTTTGAATAACTGCA+GGG | + | chr4.4:19145347-19145366 | MS.gene35171:CDS | 25.0% |
| !! | TTGAATTTTTGAATAACTGC+AGG | + | chr4.4:19145346-19145365 | MS.gene35171:CDS | 25.0% |
| !! | TTTTAATCATGATATTGGTG+TGG | + | chr4.4:19144569-19144588 | MS.gene35171:CDS | 25.0% |
| AAAAACAACAACAGAATGGA+TGG | - | chr4.4:19144923-19144942 | None:intergenic | 30.0% | |
| AATCAATGATAAGCAAGTGA+AGG | - | chr4.4:19144620-19144639 | None:intergenic | 30.0% | |
| ACAGTGATATTCATATTTGG+CGG | - | chr4.4:19145282-19145301 | None:intergenic | 30.0% | |
| ATTATGTTTGTCTGGCATTA+CGG | + | chr4.4:19144727-19144746 | MS.gene35171:CDS | 30.0% | |
| CATTTCTTAGGAAAATATGC+AGG | + | chr4.4:19145463-19145482 | MS.gene35171:CDS | 30.0% | |
| GTAATCTTCAAAGTCAATCA+AGG | + | chr4.4:19144664-19144683 | MS.gene35171:CDS | 30.0% | |
| GTGATGAAATGAGAAAAGAT+CGG | - | chr4.4:19144889-19144908 | None:intergenic | 30.0% | |
| TGTTAAGCTTGAATCTATGA+TGG | + | chr4.4:19145119-19145138 | MS.gene35171:CDS | 30.0% | |
| AAGAGAGATACCTTGTAAAG+AGG | + | chr4.4:19144983-19145002 | MS.gene35171:CDS | 35.0% | |
| AATGCATAGTAAAGTCTCGA+TGG | + | chr4.4:19144774-19144793 | MS.gene35171:CDS | 35.0% | |
| ACATTTAAGAGACTCTCATG+AGG | - | chr4.4:19145513-19145532 | None:intergenic | 35.0% | |
| AGATACCTTGTAAAGAGGAT+TGG | + | chr4.4:19144988-19145007 | MS.gene35171:CDS | 35.0% | |
| ATACAGTTTATATGGACAGC+AGG | + | chr4.4:19145164-19145183 | MS.gene35171:CDS | 35.0% | |
| ATCTTCAAAGTCAATCAAGG+TGG | + | chr4.4:19144667-19144686 | MS.gene35171:CDS | 35.0% | |
| ATGAAATGAGAAAAGATCGG+TGG | - | chr4.4:19144886-19144905 | None:intergenic | 35.0% | |
| ATTAGGAAACACAGTTGTGA+TGG | + | chr4.4:19145389-19145408 | MS.gene35171:CDS | 35.0% | |
| CAAGCTTAACAAACAGTGAA+AGG | - | chr4.4:19145110-19145129 | None:intergenic | 35.0% | |
| CATGAGAGTCTCTTAAATGT+TGG | + | chr4.4:19145513-19145532 | MS.gene35171:CDS | 35.0% | |
| CGAAAGATGTGGTAATTCTT+AGG | - | chr4.4:19145015-19145034 | None:intergenic | 35.0% | |
| ! | AAGCTTGAATCTATGATGGA+AGG | + | chr4.4:19145123-19145142 | MS.gene35171:CDS | 35.0% |
| ! | CACTTGCTTATCATTGATTG+TGG | + | chr4.4:19144621-19144640 | MS.gene35171:CDS | 35.0% |
| ACACGAACAAGTCCTAAACT+TGG | - | chr4.4:19144820-19144839 | None:intergenic | 40.0% | |
| AGTTTATATGGACAGCAGGA+TGG | + | chr4.4:19145168-19145187 | MS.gene35171:CDS | 40.0% | |
| ATAGTAAAGTCTCGATGGCA+TGG | + | chr4.4:19144779-19144798 | MS.gene35171:CDS | 40.0% | |
| CAAAGTCAATCAAGGTGGAT+GGG | + | chr4.4:19144672-19144691 | MS.gene35171:CDS | 40.0% | |
| CACGAACAAGTCCTAAACTT+GGG | - | chr4.4:19144819-19144838 | None:intergenic | 40.0% | |
| GATGGCGTGTTGAATAACAA+CGG | + | chr4.4:19145186-19145205 | MS.gene35171:CDS | 40.0% | |
| GTGATATTCATATTTGGCGG+CGG | - | chr4.4:19145279-19145298 | None:intergenic | 40.0% | |
| TAGGTCCAATCCTCTTTACA+AGG | - | chr4.4:19144996-19145015 | None:intergenic | 40.0% | |
| TCAAAGTCAATCAAGGTGGA+TGG | + | chr4.4:19144671-19144690 | MS.gene35171:CDS | 40.0% | |
| TTACCACATCTTTCGATGTG+TGG | + | chr4.4:19145020-19145039 | MS.gene35171:CDS | 40.0% | |
| ! | AAATTCAAGTTCATCGCCCT+CGG | - | chr4.4:19145334-19145353 | None:intergenic | 40.0% |
| ! | ACAAGGTATCTCTCTTCTTC+CGG | - | chr4.4:19144979-19144998 | None:intergenic | 40.0% |
| AACACTCCGGCAATTACAAG+AGG | - | chr4.4:19144700-19144719 | None:intergenic | 45.0% | |
| AAGCACGACTTCTTCGAATG+TGG | + | chr4.4:19145209-19145228 | MS.gene35171:CDS | 45.0% | |
| AATATCACTGTTAGGCCCTG+CGG | + | chr4.4:19145291-19145310 | MS.gene35171:CDS | 45.0% | |
| ACAACAACAGAATGGATGGC+TGG | - | chr4.4:19144919-19144938 | None:intergenic | 45.0% | |
| ACATCTTTCGATGTGTGGCA+CGG | + | chr4.4:19145025-19145044 | MS.gene35171:CDS | 45.0% | |
| ACTCTTCGTCTTTCTTGTGC+AGG | - | chr4.4:19145065-19145084 | None:intergenic | 45.0% | |
| CTTGTTCGTGTACCTGGAAT+CGG | + | chr4.4:19144829-19144848 | MS.gene35171:CDS | 45.0% | |
| GAAACACAGTTGTGATGGCA+AGG | + | chr4.4:19145394-19145413 | MS.gene35171:CDS | 45.0% | |
| GTCTACACAGAACTTGCAAG+TGG | + | chr4.4:19144856-19144875 | MS.gene35171:CDS | 45.0% | |
| TGAATAACTGCAGGGATGCT+GGG | + | chr4.4:19145355-19145374 | MS.gene35171:CDS | 45.0% | |
| TGGGTTCCTCTTGTAATTGC+CGG | + | chr4.4:19144691-19144710 | MS.gene35171:CDS | 45.0% | |
| TTGAATAACTGCAGGGATGC+TGG | + | chr4.4:19145354-19145373 | MS.gene35171:CDS | 45.0% | |
| ! | CAAGGTATCTCTCTTCTTCC+GGG | - | chr4.4:19144978-19144997 | None:intergenic | 45.0% |
| ! | TTAGGACTTGTTCGTGTACC+TGG | + | chr4.4:19144823-19144842 | MS.gene35171:CDS | 45.0% |
| ACACAGTTGTGATGGCAAGG+AGG | + | chr4.4:19145397-19145416 | MS.gene35171:CDS | 50.0% | |
| AGAATGGATGGCTGGTAGGT+TGG | - | chr4.4:19144911-19144930 | None:intergenic | 50.0% | |
| AGGCGAGTACAAGTATCCAG+TGG | - | chr4.4:19144600-19144619 | None:intergenic | 50.0% | |
| CAACAGAATGGATGGCTGGT+AGG | - | chr4.4:19144915-19144934 | None:intergenic | 50.0% | |
| CAAGTAAGTGGCCAAACCGA+GGG | + | chr4.4:19145315-19145334 | MS.gene35171:CDS | 50.0% | |
| CACAGTTGTGATGGCAAGGA+GGG | + | chr4.4:19145398-19145417 | MS.gene35171:CDS | 50.0% | |
| GAATAACTGCAGGGATGCTG+GGG | + | chr4.4:19145356-19145375 | MS.gene35171:CDS | 50.0% | |
| GCTGGGGTGGTTCACATATT+AGG | + | chr4.4:19145372-19145391 | MS.gene35171:CDS | 50.0% | |
| GTATCTCTCTTCTTCCGGGA+CGG | - | chr4.4:19144974-19144993 | None:intergenic | 50.0% | |
| GTCTCGATGGCATGGATTCT+CGG | + | chr4.4:19144787-19144806 | MS.gene35171:CDS | 50.0% | |
| GTGCCACACATCGAAAGATG+TGG | - | chr4.4:19145026-19145045 | None:intergenic | 50.0% | |
| TCAAGTAAGTGGCCAAACCG+AGG | + | chr4.4:19145314-19145333 | MS.gene35171:CDS | 50.0% | |
| TCTCGATGGCATGGATTCTC+GGG | + | chr4.4:19144788-19144807 | MS.gene35171:CDS | 50.0% | |
| TTCTTCCGGGACGGTGTAAA+CGG | - | chr4.4:19144965-19144984 | None:intergenic | 50.0% | |
| TTTCGATGTGTGGCACGGTA+TGG | + | chr4.4:19145030-19145049 | MS.gene35171:CDS | 50.0% | |
| ! | GTGTAGACTAGTCCGATTCC+AGG | - | chr4.4:19144844-19144863 | None:intergenic | 50.0% |
| ATGGCATGGATTCTCGGGCT+TGG | + | chr4.4:19144793-19144812 | MS.gene35171:CDS | 55.0% | |
| CAAGTTCATCGCCCTCGGTT+TGG | - | chr4.4:19145329-19145348 | None:intergenic | 55.0% | |
| TCTTCCGGGACGGTGTAAAC+GGG | - | chr4.4:19144964-19144983 | None:intergenic | 55.0% | |
| TGGCCACTTACTTGACCGCA+GGG | - | chr4.4:19145309-19145328 | None:intergenic | 55.0% | |
| TTGGCCACTTACTTGACCGC+AGG | - | chr4.4:19145310-19145329 | None:intergenic | 55.0% | |
| AGGCCCTGCGGTCAAGTAAG+TGG | + | chr4.4:19145303-19145322 | MS.gene35171:CDS | 60.0% | |
| CCTTCCCGTTTACACCGTCC+CGG | + | chr4.4:19144957-19144976 | MS.gene35171:CDS | 60.0% | |
| CTCGGGCTTGGCCCAAGTTT+AGG | + | chr4.4:19144805-19144824 | MS.gene35171:CDS | 60.0% | |
| TAACTGCAGGGATGCTGGGG+TGG | + | chr4.4:19145359-19145378 | MS.gene35171:CDS | 60.0% | |
| TATTGGTGTGGCGCTGCCAC+TGG | + | chr4.4:19144581-19144600 | MS.gene35171:CDS | 60.0% | |
| CCGGGACGGTGTAAACGGGA+AGG | - | chr4.4:19144960-19144979 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 19144565 | 19145554 | 19144565 | ID=MS.gene35171 |
| chr4.4 | mRNA | 19144565 | 19145554 | 19144565 | ID=MS.gene35171.t1;Parent=MS.gene35171 |
| chr4.4 | exon | 19144565 | 19145554 | 19144565 | ID=MS.gene35171.t1.exon1;Parent=MS.gene35171.t1 |
| chr4.4 | CDS | 19144565 | 19145554 | 19144565 | ID=cds.MS.gene35171.t1;Parent=MS.gene35171.t1 |
| Gene Sequence |
| Protein sequence |
