AlfalfaGEDB | MS.gene35171

M. sativa cultivar XinJiangDaYe / MS.gene35171

KEGG: K03549
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071805 GO:0098655 GO:0098660 GO:0098662 GO:0110165
PFAM: PF02705.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35171.t1	XP_013457360.1	98.5	329	5	0	1	329	459	787	4.30E-182	647.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35171.t1	Q9SA05	70.2	326	89	3	9	329	474	796	1.8e-128	460.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35171.t1	A0A072UPX3	98.5	329	5	0	1	329	459	787	3.1e-182	647.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene059367	MS.gene35171	0.807871	4.09E-50	-1.69E-46
MS.gene059368	MS.gene35171	0.829333	5.46E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35171.t1	MTR_4g094660	98.480	329	5	0	1	329	459	787	0.0	673
MS.gene35171.t1	MTR_4g094660	98.480	329	5	0	1	329	273	601	0.0	672
MS.gene35171.t1	MTR_2g438150	79.104	335	60	5	1	329	459	789	0.0	536
MS.gene35171.t1	MTR_2g438150	78.507	335	62	5	1	329	459	789	0.0	531
MS.gene35171.t1	MTR_2g438160	86.335	161	22	0	1	161	459	619	4.38e-96	297
MS.gene35171.t1	MTR_6g033165	40.909	352	182	3	1	329	471	819	9.46e-86	275
MS.gene35171.t1	MTR_6g007697	39.888	356	168	6	1	329	440	776	8.72e-82	263
MS.gene35171.t1	MTR_5g070670	39.118	340	190	4	3	329	514	849	1.31e-79	259
MS.gene35171.t1	MTR_5g034500	39.003	341	196	4	1	329	442	782	2.63e-78	254
MS.gene35171.t1	MTR_2g008820	39.275	331	192	3	8	329	519	849	4.88e-78	255

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35171.t1	AT2G35060	70.606	330	92	3	1	329	467	792	3.50e-168	488
MS.gene35171.t1	AT2G35060	70.606	330	92	3	1	329	467	792	3.50e-168	488
MS.gene35171.t1	AT2G35060	70.606	330	92	3	1	329	467	792	3.50e-168	488
MS.gene35171.t1	AT2G35060	70.606	330	92	3	1	329	468	793	3.72e-168	488
MS.gene35171.t1	AT1G31120	72.619	336	80	6	1	329	466	796	6.96e-164	477
MS.gene35171.t1	AT4G19960	62.798	336	107	2	9	329	254	586	2.92e-139	407
MS.gene35171.t1	AT4G19960	62.798	336	107	2	9	329	475	807	3.34e-136	406
MS.gene35171.t1	AT4G19960	62.798	336	107	2	9	329	491	823	4.11e-136	406
MS.gene35171.t1	AT4G19960	62.798	336	107	2	9	329	501	833	4.57e-136	406
MS.gene35171.t1	AT3G02050	42.373	354	177	4	1	329	438	789	1.09e-85	274

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Find 78 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTCAAGTTCATCGCCCT+CGG	0.506358	4.4:-19145331	None:intergenic
AACACTCCGGCAATTACAAG+AGG	0.633389	4.4:-19144697	None:intergenic
AAGAGAGATACCTTGTAAAG+AGG	0.504738	4.4:+19144983	MS.gene35171:CDS
AAGCACGACTTCTTCGAATG+TGG	0.624780	4.4:+19145209	MS.gene35171:CDS
AAGCTTGAATCTATGATGGA+AGG	0.641141	4.4:+19145123	MS.gene35171:CDS
AATATCACTGTTAGGCCCTG+CGG	0.657194	4.4:+19145291	MS.gene35171:CDS
AATCAATGATAAGCAAGTGA+AGG	0.625371	4.4:-19144617	None:intergenic
AATGCATAGTAAAGTCTCGA+TGG	0.638063	4.4:+19144774	MS.gene35171:CDS
ACAACAACAGAATGGATGGC+TGG	0.560974	4.4:-19144916	None:intergenic
ACAAGGTATCTCTCTTCTTC+CGG	0.262164	4.4:-19144976	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACAACAACAGAATGGA+TGG	-	chr4.4:19144923-19144942	None:intergenic	30.0%
AATCAATGATAAGCAAGTGA+AGG	-	chr4.4:19144620-19144639	None:intergenic	30.0%
ACAGTGATATTCATATTTGG+CGG	-	chr4.4:19145282-19145301	None:intergenic	30.0%
ATTATGTTTGTCTGGCATTA+CGG	+	chr4.4:19144727-19144746	MS.gene35171:CDS	30.0%
CATTTCTTAGGAAAATATGC+AGG	+	chr4.4:19145463-19145482	MS.gene35171:CDS	30.0%
GTAATCTTCAAAGTCAATCA+AGG	+	chr4.4:19144664-19144683	MS.gene35171:CDS	30.0%
GTGATGAAATGAGAAAAGAT+CGG	-	chr4.4:19144889-19144908	None:intergenic	30.0%
TGTTAAGCTTGAATCTATGA+TGG	+	chr4.4:19145119-19145138	MS.gene35171:CDS	30.0%
AAGAGAGATACCTTGTAAAG+AGG	+	chr4.4:19144983-19145002	MS.gene35171:CDS	35.0%
AATGCATAGTAAAGTCTCGA+TGG	+	chr4.4:19144774-19144793	MS.gene35171:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	19144565	19145554	19144565	ID=MS.gene35171
chr4.4	mRNA	19144565	19145554	19144565	ID=MS.gene35171.t1;Parent=MS.gene35171
chr4.4	exon	19144565	19145554	19144565	ID=MS.gene35171.t1.exon1;Parent=MS.gene35171.t1
chr4.4	CDS	19144565	19145554	19144565	ID=cds.MS.gene35171.t1;Parent=MS.gene35171.t1

Gene Sequence

>MS.gene35171

ATGATTTTAATCATGATATTGGTGTGGCGCTGCCACTGGATACTTGTACTCGCCTTCACTTGCTTATCATTGATTGTGGAATTGTCATACTTCTTCTCTGTAATCTTCAAAGTCAATCAAGGTGGATGGGTTCCTCTTGTAATTGCCGGAGTGTTTTTTATTATTATGTTTGTCTGGCATTACGGTACAGTGAAACGCTACGAGTTTGAAATGCATAGTAAAGTCTCGATGGCATGGATTCTCGGGCTTGGCCCAAGTTTAGGACTTGTTCGTGTACCTGGAATCGGACTAGTCTACACAGAACTTGCAAGTGGAGTACCACCGATCTTTTCTCATTTCATCACCAACCTACCAGCCATCCATTCTGTTGTTGTTTTTGTATGCGTCAAATACCTTCCCGTTTACACCGTCCCGGAAGAAGAGAGATACCTTGTAAAGAGGATTGGACCTAAGAATTACCACATCTTTCGATGTGTGGCACGGTATGGCTACAAAGACCTGCACAAGAAAGACGAAGAGTTTGAAAAAAAACTCTTTGATAACCTTTCACTGTTTGTTAAGCTTGAATCTATGATGGAAGGTTGTTCAGACTCAGTTGAATACAGTTTATATGGACAGCAGGATGGCGTGTTGAATAACAACGGAAGCACGACTTCTTCGAATGTGGAGTTAACAATTAACTCGATAGATTCAATAGTACAAGTTCGATCACCGCCGCCAAATATGAATATCACTGTTAGGCCCTGCGGTCAAGTAAGTGGCCAAACCGAGGGCGATGAACTTGAATTTTTGAATAACTGCAGGGATGCTGGGGTGGTTCACATATTAGGAAACACAGTTGTGATGGCAAGGAGGGATTCAAATATTTTCAAGAAAGTAGCTGTTGATTATATATATGCATTTCTTAGGAAAATATGCAGGGAAAATAGTGTGATCTTCAATGTTCCTCATGAGAGTCTCTTAAATGTTGGTCAGATATTCTATGTATAG

Protein sequence

>MS.gene35171.t1

MILIMILVWRCHWILVLAFTCLSLIVELSYFFSVIFKVNQGGWVPLVIAGVFFIIMFVWHYGTVKRYEFEMHSKVSMAWILGLGPSLGLVRVPGIGLVYTELASGVPPIFSHFITNLPAIHSVVVFVCVKYLPVYTVPEEERYLVKRIGPKNYHIFRCVARYGYKDLHKKDEEFEKKLFDNLSLFVKLESMMEGCSDSVEYSLYGQQDGVLNNNGSTTSSNVELTINSIDSIVQVRSPPPNMNITVRPCGQVSGQTEGDELEFLNNCRDAGVVHILGNTVVMARRDSNIFKKVAVDYIYAFLRKICRENSVIFNVPHESLLNVGQIFYV