AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059368


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059368.t1 MTR_8g083280 76.923 260 30 3 119 349 200 458 1.13e-133 389
MS.gene059368.t1 MTR_8g083280 92.857 126 9 0 1 126 1 126 1.27e-78 248
MS.gene059368.t1 MTR_3g084520 40.215 465 149 13 4 343 3 463 1.61e-88 274
MS.gene059368.t1 MTR_8g083290 57.143 273 67 6 118 343 185 454 5.81e-86 267
MS.gene059368.t1 MTR_8g083290 49.242 132 59 3 6 136 3 127 2.46e-34 131
MS.gene059368.t1 MTR_3g084540 39.700 466 151 15 4 343 3 464 1.30e-81 256
MS.gene059368.t1 MTR_3g084530 44.512 328 110 10 84 343 140 463 4.51e-68 221
MS.gene059368.t1 MTR_3g084530 51.163 129 57 2 4 132 3 125 4.93e-36 136
MS.gene059368.t1 MTR_6g038300 32.080 452 182 13 4 343 8 446 3.73e-51 176
MS.gene059368.t1 MTR_6g038240 32.599 454 182 16 1 343 5 445 1.13e-46 165
MS.gene059368.t1 MTR_5g035580 36.735 245 109 8 140 343 205 444 5.62e-38 141
MS.gene059368.t1 MTR_5g035580 37.398 123 66 2 3 125 9 120 1.25e-20 92.8
MS.gene059368.t1 MTR_8g083300 51.471 136 60 3 1 136 1 130 1.64e-37 132
MS.gene059368.t1 MTR_5g035560 36.546 249 112 8 140 347 203 446 5.26e-36 136
MS.gene059368.t1 MTR_5g035560 32.778 180 81 6 3 170 7 158 2.56e-20 92.0
MS.gene059368.t1 MTR_1g107360 27.333 450 208 13 7 343 9 452 1.76e-35 135
MS.gene059368.t1 MTR_7g080935 39.357 249 96 9 140 343 205 443 4.74e-35 133
MS.gene059368.t1 MTR_7g080935 35.294 119 68 2 7 125 11 120 3.04e-12 67.8
MS.gene059368.t1 MTR_7g080950 37.302 252 105 8 140 347 200 442 7.03e-35 133
MS.gene059368.t1 MTR_7g080950 37.815 119 65 2 7 125 6 115 3.55e-14 73.6
MS.gene059368.t1 MTR_7g080940 39.357 249 96 9 140 343 205 443 1.19e-34 132
MS.gene059368.t1 MTR_7g080900 29.581 453 190 19 1 339 6 443 7.52e-34 130
MS.gene059368.t1 MTR_8g088560 36.226 265 113 9 127 347 200 452 1.18e-33 129
MS.gene059368.t1 MTR_8g088560 32.773 119 75 3 7 125 10 123 3.31e-11 64.7
MS.gene059368.t1 MTR_6g038230 37.052 251 113 8 140 350 207 452 2.64e-33 128
MS.gene059368.t1 MTR_6g038230 34.054 185 103 8 3 182 7 177 2.24e-18 86.3
MS.gene059368.t1 MTR_1g107350 35.366 246 114 7 140 342 215 458 3.82e-33 128
MS.gene059368.t1 MTR_1g107350 32.812 128 70 3 7 125 8 128 1.23e-12 68.9
MS.gene059368.t1 MTR_6g038220 38.306 248 108 8 140 347 206 448 6.79e-33 127
MS.gene059368.t1 MTR_6g038220 34.146 123 73 3 3 125 7 121 1.15e-15 78.2
MS.gene059368.t1 MTR_6g038200 37.849 251 105 7 140 347 207 449 1.06e-32 127
MS.gene059368.t1 MTR_6g038200 33.333 123 75 2 3 125 7 122 1.37e-15 77.8
MS.gene059368.t1 MTR_8g064870 33.466 251 118 6 140 343 216 464 1.08e-32 127
MS.gene059368.t1 MTR_1g107380 33.333 246 117 8 140 343 223 463 1.70e-32 127
MS.gene059368.t1 MTR_3g049970 33.865 251 121 7 140 347 216 464 1.66e-31 124
MS.gene059368.t1 MTR_3g049970 33.600 125 73 2 7 125 9 129 1.54e-14 74.7
MS.gene059368.t1 MTR_5g004940 27.720 386 196 13 7 343 17 368 4.10e-30 119
MS.gene059368.t1 MTR_8g064880 33.617 235 107 6 140 327 218 450 8.29e-30 119
MS.gene059368.t1 MTR_1g107365 33.750 240 119 7 140 343 247 482 1.91e-29 118
MS.gene059368.t1 MTR_1g032490 35.458 251 117 7 140 347 217 465 2.28e-29 118
MS.gene059368.t1 MTR_1g032490 32.824 131 82 2 5 131 8 136 2.85e-13 70.9
MS.gene059368.t1 MTR_1g107315 36.255 251 115 7 140 347 215 463 1.18e-28 116
MS.gene059368.t1 MTR_1g107315 32.031 128 81 2 2 125 3 128 1.30e-11 65.9
MS.gene059368.t1 MTR_1g107325 28.108 370 197 13 7 342 8 342 1.56e-27 111
MS.gene059368.t1 MTR_1g107375 32.780 241 121 8 140 343 208 444 1.43e-26 110
MS.gene059368.t1 MTR_4g095008 30.714 280 136 9 117 343 181 455 5.97e-26 108
MS.gene059368.t1 MTR_1g107285 32.661 248 122 7 140 347 216 458 4.82e-25 105
MS.gene059368.t1 MTR_5g072860 31.148 244 133 6 140 350 222 463 2.16e-24 103
MS.gene059368.t1 MTR_4g094920 31.984 247 116 8 140 339 225 466 4.34e-24 103
MS.gene059368.t1 MTR_4g094920 36.441 118 69 3 8 125 27 138 5.24e-12 67.0
MS.gene059368.t1 MTR_3g031450 32.231 242 127 7 140 346 206 445 2.24e-23 100
MS.gene059368.t1 MTR_7g070940 31.325 249 119 6 141 341 217 461 5.64e-23 100
MS.gene059368.t1 MTR_3g031400 32.203 236 131 6 140 346 208 443 6.41e-22 96.7
MS.gene059368.t1 MTR_7g070860 31.667 240 118 5 141 339 215 449 8.57e-22 96.3
MS.gene059368.t1 MTR_5g075440 30.126 239 131 6 140 344 211 447 3.27e-21 94.7
MS.gene059368.t1 MTR_7g070800 30.522 249 123 5 141 339 214 462 4.23e-21 94.4
MS.gene059368.t1 MTR_7g070610 29.644 253 124 5 141 339 221 473 8.78e-21 93.6
MS.gene059368.t1 MTR_3g069710 31.381 239 118 5 140 339 207 438 1.18e-20 93.2
MS.gene059368.t1 MTR_8g465670 28.571 259 120 9 140 343 213 461 2.59e-20 92.0
MS.gene059368.t1 MTR_5g072810 29.289 239 130 7 140 343 210 444 3.34e-20 91.7
MS.gene059368.t1 MTR_7g070780 28.571 252 127 5 141 339 219 470 4.48e-20 91.7
MS.gene059368.t1 MTR_3g069690 29.876 241 122 6 140 339 202 436 7.99e-20 90.5
MS.gene059368.t1 MTR_7g070660 29.032 248 127 5 141 339 219 466 1.52e-19 89.7
MS.gene059368.t1 MTR_5g016480 28.159 277 142 11 119 343 190 461 1.54e-19 89.7
MS.gene059368.t1 MTR_3g479490 28.629 248 123 9 140 341 223 462 2.51e-19 89.4
MS.gene059368.t1 MTR_6g014220 28.226 248 124 8 137 339 226 464 3.70e-19 88.6
MS.gene059368.t1 MTR_7g080960 33.641 217 94 10 137 338 276 457 6.41e-19 87.8
MS.gene059368.t1 MTR_7g080960 34.167 120 70 3 7 125 12 123 5.92e-12 67.0
MS.gene059368.t1 MTR_0184s0040 27.574 272 136 9 118 339 207 467 6.60e-19 87.8
MS.gene059368.t1 MTR_0078s0190 27.574 272 136 9 118 339 207 467 6.60e-19 87.8
MS.gene059368.t1 MTR_6g005600 30.315 254 115 8 140 339 209 454 1.26e-18 87.0
MS.gene059368.t1 MTR_6g488280 28.854 253 123 7 140 343 211 455 1.27e-18 87.0
MS.gene059368.t1 MTR_0428s0010 28.854 253 123 7 140 343 211 455 1.27e-18 87.0
MS.gene059368.t1 MTR_5g072840 28.571 238 133 7 140 343 205 439 1.60e-18 86.7
MS.gene059368.t1 MTR_8g006730 28.063 253 124 7 141 343 213 457 3.87e-18 85.5
MS.gene059368.t1 MTR_6g023665 27.953 254 124 7 140 343 218 462 7.73e-18 84.7
MS.gene059368.t1 MTR_8g006710 28.346 254 124 7 140 343 211 456 8.75e-18 84.7
MS.gene059368.t1 MTR_7g070810 28.514 249 129 6 141 341 217 464 1.37e-17 84.0
MS.gene059368.t1 MTR_6g014290 28.287 251 126 8 134 339 223 464 2.55e-17 83.2
MS.gene059368.t1 MTR_0184s0030 29.435 248 121 8 141 339 212 454 3.32e-17 82.8
MS.gene059368.t1 MTR_0078s0010 29.310 232 109 7 140 321 208 434 4.53e-17 82.4
MS.gene059368.t1 MTR_4g064987 27.826 230 117 6 140 328 200 421 5.38e-17 82.0
MS.gene059368.t1 MTR_4g064987 27.826 230 117 6 140 328 206 427 5.54e-17 82.0
MS.gene059368.t1 MTR_8g012745 28.175 252 121 7 141 339 211 455 7.09e-17 82.0
MS.gene059368.t1 MTR_5g072830 26.939 245 142 7 140 350 205 446 9.36e-17 81.3
MS.gene059368.t1 MTR_7g047030 28.879 232 110 7 140 321 208 434 2.06e-16 80.5
MS.gene059368.t1 MTR_7g047270 28.879 232 110 7 140 321 208 434 2.06e-16 80.5
MS.gene059368.t1 MTR_8g006220 27.236 246 106 9 140 322 212 447 2.71e-16 80.1
MS.gene059368.t1 MTR_4g094220 25.600 250 130 6 140 341 226 467 4.66e-16 79.3
MS.gene059368.t1 MTR_4g082810 32.597 181 93 8 112 271 176 348 5.32e-16 79.0
MS.gene059368.t1 MTR_6g033660 27.642 246 122 8 140 339 215 450 7.92e-16 78.6
MS.gene059368.t1 MTR_8g027885 27.027 259 131 8 140 348 218 468 9.65e-16 78.6
MS.gene059368.t1 MTR_5g019580 26.259 278 139 6 113 328 205 478 9.69e-16 78.6
MS.gene059368.t1 MTR_5g464760 28.571 238 118 6 140 333 230 459 1.06e-15 78.2
MS.gene059368.t1 MTR_0891s0010 28.629 248 119 11 140 339 39 276 1.10e-15 77.0
MS.gene059368.t1 MTR_5g019580 26.259 278 139 6 113 328 181 454 1.20e-15 78.2
MS.gene059368.t1 MTR_0078s0060 27.236 246 121 8 140 334 208 446 1.43e-15 77.8
MS.gene059368.t1 MTR_5g072820 27.917 240 132 7 140 343 205 439 2.04e-15 77.4
MS.gene059368.t1 MTR_5g031840 27.049 244 127 7 140 341 216 450 6.18e-15 75.9
MS.gene059368.t1 MTR_5g072850 26.766 269 150 7 6 242 9 262 1.37e-14 74.7
MS.gene059368.t1 MTR_8g012650 28.464 267 125 9 141 350 211 468 1.52e-14 74.7
MS.gene059368.t1 MTR_8g012635 29.588 267 122 11 141 350 211 468 1.59e-14 74.7
MS.gene059368.t1 MTR_2g059240 28.571 245 129 8 140 344 222 460 2.48e-14 74.3
MS.gene059368.t1 MTR_6g014186 28.959 221 134 9 141 349 230 439 2.65e-14 73.9
MS.gene059368.t1 MTR_7g013180 28.879 232 120 7 141 339 215 434 2.66e-14 73.9
MS.gene059368.t1 MTR_4g082820 30.392 204 109 7 113 303 172 355 4.44e-14 73.6
MS.gene059368.t1 MTR_8g027870 25.869 259 134 7 140 348 218 468 4.93e-14 73.2
MS.gene059368.t1 MTR_5g090700 37.755 98 61 0 140 237 213 310 5.53e-14 73.2
MS.gene059368.t1 MTR_5g031860 28.340 247 119 7 140 339 221 456 3.61e-13 70.5
MS.gene059368.t1 MTR_6g078320 25.600 250 134 7 140 342 225 469 4.63e-13 70.5
MS.gene059368.t1 MTR_5g016660 33.163 196 86 5 189 339 275 470 7.23e-13 69.7
MS.gene059368.t1 MTR_7g470610 29.703 202 92 5 141 294 76 275 3.85e-12 66.6
MS.gene059368.t1 MTR_7g070583 29.703 202 92 5 141 294 76 275 3.85e-12 66.6
MS.gene059368.t1 MTR_7g102550 27.099 262 135 7 140 346 219 479 4.42e-12 67.4
MS.gene059368.t1 MTR_5g090670 37.500 104 55 3 140 237 211 310 4.50e-12 67.4
MS.gene059368.t1 MTR_2g046750 37.255 102 57 3 140 237 209 307 7.49e-12 66.6
MS.gene059368.t1 MTR_7g070870 34.454 119 74 2 141 256 224 341 7.87e-12 66.6
MS.gene059368.t1 MTR_6g013435 27.751 209 126 6 140 341 102 292 9.60e-12 65.5
MS.gene059368.t1 MTR_5g090610 35.714 98 63 0 140 237 197 294 3.14e-11 64.7
MS.gene059368.t1 MTR_5g090620 35.922 103 57 3 140 237 210 308 4.40e-11 64.3
MS.gene059368.t1 MTR_5g090660 25.692 253 131 7 141 339 210 459 4.87e-11 64.3
MS.gene059368.t1 MTR_2g008226 25.000 248 135 8 139 348 225 459 6.88e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059368.t1 AT4G14090 32.667 450 182 15 2 342 8 445 3.75e-58 195
MS.gene059368.t1 AT1G05560 42.412 257 91 7 135 343 245 492 2.08e-47 168
MS.gene059368.t1 AT1G05560 40.496 121 66 3 7 126 55 170 1.49e-20 93.2
MS.gene059368.t1 AT4G15550 39.777 269 108 7 117 341 204 462 2.17e-47 167
MS.gene059368.t1 AT4G15550 38.710 124 68 3 7 124 13 134 9.64e-21 93.6
MS.gene059368.t1 AT1G05560 42.412 257 91 7 135 343 195 442 2.26e-47 167
MS.gene059368.t1 AT1G05560 40.496 121 66 3 7 126 5 120 1.27e-20 93.2
MS.gene059368.t1 AT1G05530 40.996 261 98 7 132 343 192 445 5.90e-45 160
MS.gene059368.t1 AT1G05530 40.496 121 66 4 7 126 5 120 5.10e-20 91.3
MS.gene059368.t1 AT2G31790 37.647 255 110 7 140 350 205 454 3.42e-39 144
MS.gene059368.t1 AT1G05680 38.039 255 104 7 139 348 203 448 3.37e-37 139
MS.gene059368.t1 AT1G05675 38.583 254 102 7 139 347 203 447 9.63e-37 138
MS.gene059368.t1 AT2G31750 37.209 258 116 8 132 347 196 449 2.49e-36 137
MS.gene059368.t1 AT2G31750 37.209 258 116 8 132 347 196 449 3.49e-36 137
MS.gene059368.t1 AT4G15500 35.628 247 118 7 140 347 213 457 7.81e-32 125
MS.gene059368.t1 AT4G15480 34.524 252 118 7 139 347 226 473 2.08e-31 124
MS.gene059368.t1 AT2G43820 34.231 260 110 8 132 342 189 436 4.31e-31 122
MS.gene059368.t1 AT2G43820 33.571 140 85 3 1 140 1 132 5.40e-16 79.3
MS.gene059368.t1 AT2G43840 35.145 276 113 10 116 342 178 436 8.94e-31 121
MS.gene059368.t1 AT2G43840 35.200 125 73 3 1 125 1 117 9.62e-15 75.5
MS.gene059368.t1 AT3G21560 34.568 243 119 6 140 343 222 463 1.01e-30 122
MS.gene059368.t1 AT2G43840 34.783 276 114 10 116 342 178 436 3.05e-30 120
MS.gene059368.t1 AT2G43840 35.200 125 73 3 1 125 1 117 1.14e-14 75.1
MS.gene059368.t1 AT4G15490 33.603 247 123 7 140 347 217 461 4.77e-28 114
MS.gene059368.t1 AT1G24100 32.800 250 125 8 140 348 207 454 1.25e-27 113
MS.gene059368.t1 AT1G24100 40.336 119 61 3 7 125 11 119 1.98e-17 83.6
MS.gene059368.t1 AT2G23260 31.408 277 134 10 117 343 174 444 5.80e-26 108
MS.gene059368.t1 AT2G23250 31.716 268 132 9 117 339 161 422 6.21e-25 105
MS.gene059368.t1 AT2G30140 31.330 233 121 6 140 339 212 438 4.12e-23 100
MS.gene059368.t1 AT2G30140 31.330 233 121 6 140 339 211 437 4.17e-23 100
MS.gene059368.t1 AT2G28080 30.204 245 119 9 133 335 223 457 1.79e-20 92.8
MS.gene059368.t1 AT2G30150 28.761 226 126 6 148 342 205 426 1.02e-19 90.1
MS.gene059368.t1 AT2G36970 29.555 247 128 7 133 342 223 460 1.07e-19 90.5
MS.gene059368.t1 AT2G30150 28.761 226 126 6 148 342 221 442 1.16e-19 90.1
MS.gene059368.t1 AT3G16520 29.630 243 120 7 140 339 212 446 4.86e-18 85.5
MS.gene059368.t1 AT3G16520 29.461 241 119 7 140 337 212 444 1.94e-17 83.6
MS.gene059368.t1 AT3G16520 29.461 241 119 7 140 337 212 444 2.38e-17 83.2
MS.gene059368.t1 AT5G38010 29.237 236 116 7 133 328 205 429 5.23e-16 79.3
MS.gene059368.t1 AT5G05870 25.078 319 173 11 72 348 156 450 1.90e-15 77.4
MS.gene059368.t1 AT3G46670 26.953 256 136 7 132 347 199 443 2.13e-15 77.4
MS.gene059368.t1 AT5G59590 26.423 246 134 7 132 339 200 436 9.98e-15 75.5
MS.gene059368.t1 AT3G46700 25.871 201 108 4 136 297 198 396 2.79e-13 70.9
MS.gene059368.t1 AT3G46720 24.130 431 217 14 7 339 9 427 3.29e-13 70.9
MS.gene059368.t1 AT4G01070 26.275 255 131 8 140 343 210 458 9.23e-13 69.3
MS.gene059368.t1 AT5G05900 27.155 232 124 7 139 331 211 436 4.25e-12 67.4
MS.gene059368.t1 AT5G26310 25.000 260 137 6 140 345 204 459 1.33e-11 65.9
MS.gene059368.t1 AT3G21800 31.852 135 88 4 112 243 183 316 1.51e-11 65.9
MS.gene059368.t1 AT1G01390 27.490 251 124 7 140 338 210 454 8.60e-11 63.5
MS.gene059368.t1 AT1G01390 27.381 252 123 8 140 338 227 471 8.90e-11 63.5

Find 114 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATAAACAACAGAAGATTT+TGG 0.246598 4.2:+13461460 None:intergenic
GGGTTTATGTGGCCTTGAGC+TGG 0.250910 4.2:+13462248 None:intergenic
ATTGAAGATGTGTGGAAGAT+AGG 0.321918 4.2:-13461129 MS.gene059368:CDS
TCTGTTGTTTATGTTTCTTT+TGG 0.336383 4.2:-13461451 MS.gene059368:CDS
CGTAAACACCTTTGAAGCTT+TGG 0.337494 4.2:-13461626 MS.gene059368:CDS
TCTACACGTTAATGCTTCCT+TGG 0.338389 4.2:-13461938 MS.gene059368:CDS
TGGATGGATTGAGGAGGATT+AGG 0.363651 4.2:+13462147 None:intergenic
AAGGTGTTTACGAGTATTAT+CGG 0.367438 4.2:+13461637 None:intergenic
CTCTAGTGGCATTTCCTCAA+TGG 0.368993 4.2:-13461179 MS.gene059368:intron
GTGGATGAGGATGGAATTGT+AGG 0.375063 4.2:-13461087 MS.gene059368:CDS
GAAAGGTTTGGATTCTTGTT+TGG 0.378817 4.2:+13461971 None:intergenic
GGATGAAATTAGAAAGTGTT+TGG 0.378934 4.2:-13461061 MS.gene059368:CDS
CGCTTGGCAAATTGAAGGGC+TGG 0.382574 4.2:+13462227 None:intergenic
TGAGAAAGAATGCAATGAAA+TGG 0.388985 4.2:-13461002 MS.gene059368:CDS
CCACCACCACCACATCCTTC+TGG 0.390460 4.2:-13462279 MS.gene059368:CDS
CGGTAGAGGTGGAGGGTGAT+AGG 0.403832 4.2:+13462173 None:intergenic
GTGATGGGGAGAGGAGAGAA+AGG 0.406369 4.2:-13461033 MS.gene059368:CDS
AAGGGGTTGGCTAGAGAGGC+AGG 0.409507 4.2:-13460979 MS.gene059368:CDS
TAAAGATGAGTTGGAAAAGA+AGG 0.413931 4.2:-13461317 MS.gene059368:CDS
GAGGTTGGAGATGGTGGTTA+TGG 0.413944 4.2:+13462127 None:intergenic
AGTCATTTGAAGGTTGCAAT+AGG 0.422571 4.2:+13461506 None:intergenic
CATTCAATATAGTCATTTGA+AGG 0.424031 4.2:+13461496 None:intergenic
TTGCAATAGGTCACCGCTAA+AGG 0.428659 4.2:+13461519 None:intergenic
TTGAAGATGTGTGGAAGATA+GGG 0.430114 4.2:-13461128 MS.gene059368:CDS
TTTGGCAGAGAGTATAAGAT+TGG 0.437133 4.2:+13461989 None:intergenic
TATGGAGAGGTTGGAGATGG+TGG 0.448776 4.2:+13462121 None:intergenic
CAAGTGCGTTGTTGAATTGT+GGG 0.449033 4.2:-13461387 MS.gene059368:CDS
CTACACGTTAATGCTTCCTT+GGG 0.449608 4.2:-13461937 MS.gene059368:CDS
GGTTTATGTGGCCTTGAGCT+GGG 0.453046 4.2:+13462249 None:intergenic
TTAGGCGACGGTAGAGGTGG+AGG 0.465565 4.2:+13462165 None:intergenic
CTCTGGCTCCAAAGCTTCAA+AGG 0.465787 4.2:+13461618 None:intergenic
TGCCAAGCGACTCATATCAA+TGG 0.465795 4.2:-13462213 MS.gene059368:CDS
ATCGTCATGGCCATCGGAGA+AGG 0.471514 4.2:+13462094 None:intergenic
AAAGATGAGTTGGAAAAGAA+GGG 0.476216 4.2:-13461316 MS.gene059368:CDS
ATTGAAGGGCTGGGTTTATG+TGG 0.477702 4.2:+13462237 None:intergenic
GAGTAAGCAAGTGAAAGGTT+TGG 0.478164 4.2:+13461959 None:intergenic
CTTCAAATGACTATATTGAA+TGG 0.480500 4.2:-13461495 MS.gene059368:CDS
TTGGAGATGGTGGTTATGGA+TGG 0.481152 4.2:+13462131 None:intergenic
CCAGAAGGATGTGGTGGTGG+TGG 0.490603 4.2:+13462279 None:intergenic
GCTAGAGAGGCAGGGAAGGA+AGG 0.496328 4.2:-13460970 MS.gene059368:CDS
TCCGGTAGTACTTCCTTTAG+CGG 0.499324 4.2:-13461532 MS.gene059368:CDS
AAAGTGTTTGGAAGTGGTGA+TGG 0.499781 4.2:-13461049 MS.gene059368:CDS
TCGTCATGGCCATCGGAGAA+GGG 0.500781 4.2:+13462095 None:intergenic
TTGGAAGTGGTGATGGGGAG+AGG 0.502226 4.2:-13461042 MS.gene059368:CDS
TCAACGGCTCTAAGTGCCTC+TGG 0.506658 4.2:+13461601 None:intergenic
GCCAAGCGACTCATATCAAT+GGG 0.506703 4.2:-13462212 MS.gene059368:CDS
GTTGGCTAGAGAGGCAGGGA+AGG 0.508792 4.2:-13460974 MS.gene059368:CDS
TGAGTCGCTTGGCAAATTGA+AGG 0.509396 4.2:+13462222 None:intergenic
GCAAGTGCGTTGTTGAATTG+TGG 0.515077 4.2:-13461388 MS.gene059368:CDS
AAGGATGTGGTGGTGGTGGT+TGG 0.517236 4.2:+13462283 None:intergenic
GCTTGGCAAATTGAAGGGCT+GGG 0.519390 4.2:+13462228 None:intergenic
GGTGAGAGTTGATGATAAAG+TGG 0.520496 4.2:-13461106 MS.gene059368:CDS
TGTTGAACTGTGAAGTGTAT+AGG 0.522665 4.2:+13462033 None:intergenic
GGTGATGAAGTCGGAGCCAC+GGG 0.524438 4.2:+13462010 None:intergenic
GTACTACCGGAGGGAATCAA+TGG 0.525946 4.2:+13461544 None:intergenic
ATGGAAGGGGTTGGCTAGAG+AGG 0.536943 4.2:-13460983 MS.gene059368:CDS
GGATTAGGCGACGGTAGAGG+TGG 0.538007 4.2:+13462162 None:intergenic
GAAACCATCGTCATGGCCAT+CGG 0.543402 4.2:+13462088 None:intergenic
ATCGGACCATTGATTCCCTC+CGG 0.545735 4.2:-13461550 MS.gene059368:CDS
AAGTGTTTGGAAGTGGTGAT+GGG 0.545845 4.2:-13461048 MS.gene059368:CDS
GTTTACGAGTATTATCGGAT+TGG 0.548691 4.2:+13461642 None:intergenic
GGTTATGGAGAGGTTGGAGA+TGG 0.552642 4.2:+13462118 None:intergenic
TTCTCCGATGGCCATGACGA+TGG 0.557095 4.2:-13462092 MS.gene059368:CDS
CTTTGAAGCTTTGGAGCCAG+AGG 0.557170 4.2:-13461617 MS.gene059368:CDS
AGTTGATGATAAAGTGGATG+AGG 0.557996 4.2:-13461100 MS.gene059368:CDS
ACCGCTAAAGGAAGTACTAC+CGG 0.558600 4.2:+13461531 None:intergenic
TGGTGATGAAGTCGGAGCCA+CGG 0.561307 4.2:+13462009 None:intergenic
ACCCATTGATATGAGTCGCT+TGG 0.561897 4.2:+13462211 None:intergenic
ATGAGGATGGAATTGTAGGA+GGG 0.563817 4.2:-13461083 MS.gene059368:CDS
TGGTGGTTATGGATGGATTG+AGG 0.564410 4.2:+13462138 None:intergenic
GAGCTACTTGTTGGAGCCCA+AGG 0.564828 4.2:+13461921 None:intergenic
AAAGAATGCAATGAAATGGA+AGG 0.567197 4.2:-13460998 MS.gene059368:CDS
GGAGGATTAGGCGACGGTAG+AGG 0.575095 4.2:+13462159 None:intergenic
AATTAGAAAGTGTTTGGAAG+TGG 0.577533 4.2:-13461055 MS.gene059368:CDS
TGCAATGAAATGGAAGGGGT+TGG 0.578497 4.2:-13460992 MS.gene059368:CDS
AAGAATGCAATGAAATGGAA+GGG 0.580916 4.2:-13460997 MS.gene059368:CDS
GGAGGGAATCAATGGTCCGA+TGG 0.581754 4.2:+13461552 None:intergenic
ATCAGCGTCGGTCTTTGTGA+TGG 0.582570 4.2:+13462061 None:intergenic
CGTCATGGCCATCGGAGAAG+GGG 0.584133 4.2:+13462096 None:intergenic
AGAGAGGCAGGGAAGGAAGG+TGG 0.586569 4.2:-13460967 MS.gene059368:CDS
GATGAGGATGGAATTGTAGG+AGG 0.587770 4.2:-13461084 MS.gene059368:CDS
CTGGTAACGTACCCAGCTCA+AGG 0.588788 4.2:-13462260 MS.gene059368:CDS
GTGTAGAGTAAGCAAGTGAA+AGG 0.589149 4.2:+13461954 None:intergenic
TGAAGATGTGTGGAAGATAG+GGG 0.590800 4.2:-13461127 MS.gene059368:CDS
GAGGTTATGATGAGTATCAA+CGG 0.591472 4.2:+13461585 None:intergenic
AGTGAAGTGGTGTTCTCAAG+TGG 0.591682 4.2:-13461286 MS.gene059368:CDS
AGATGAGTTGGAAAAGAAGG+GGG 0.591765 4.2:-13461314 MS.gene059368:CDS
TATAAGATTGGTGATGAAGT+CGG 0.591974 4.2:+13462001 None:intergenic
GAGGGAATCAATGGTCCGAT+GGG 0.595436 4.2:+13461553 None:intergenic
GAGTCGCTTGGCAAATTGAA+GGG 0.597812 4.2:+13462223 None:intergenic
AGAATGCAATGAAATGGAAG+GGG 0.608881 4.2:-13460996 MS.gene059368:CDS
AAGATGAGTTGGAAAAGAAG+GGG 0.609021 4.2:-13461315 MS.gene059368:CDS
CAAAACTAATTGAAGATGTG+TGG 0.610455 4.2:-13461137 MS.gene059368:CDS
AGGGGTTGGCTAGAGAGGCA+GGG 0.613392 4.2:-13460978 MS.gene059368:CDS
GGGGAGAGGAGAGAAAGGAG+AGG 0.615489 4.2:-13461028 MS.gene059368:CDS
GATGATAAAGTGGATGAGGA+TGG 0.616208 4.2:-13461096 MS.gene059368:CDS
TGAGGATGGAATTGTAGGAG+GGG 0.617822 4.2:-13461082 MS.gene059368:CDS
TAGGCGACGGTAGAGGTGGA+GGG 0.621593 4.2:+13462166 None:intergenic
AACCTCAAAATGATTCCCAT+CGG 0.625304 4.2:-13461568 MS.gene059368:CDS
TTACCAGAAGGATGTGGTGG+TGG 0.635353 4.2:+13462276 None:intergenic
TGAACTGTGAAGTGTATAGG+TGG 0.639900 4.2:+13462036 None:intergenic
AGTGTTTGGAAGTGGTGATG+GGG 0.640210 4.2:-13461047 MS.gene059368:CDS
GAGCTGGGTACGTTACCAGA+AGG 0.640393 4.2:+13462264 None:intergenic
TGGCGATGAAACCATCGTCA+TGG 0.640770 4.2:+13462081 None:intergenic
GGTACGTTACCAGAAGGATG+TGG 0.640781 4.2:+13462270 None:intergenic
GATTGAGGAGGATTAGGCGA+CGG 0.647039 4.2:+13462153 None:intergenic
GAAGTGGTGTTCTCAAGTGG+AGG 0.648671 4.2:-13461283 MS.gene059368:intron
GTCATGGCCATCGGAGAAGG+GGG 0.657268 4.2:+13462097 None:intergenic
TGGTTATGGATGGATTGAGG+AGG 0.667299 4.2:+13462141 None:intergenic
ACTTCACAGTTCAACACCCG+TGG 0.674976 4.2:-13462026 MS.gene059368:CDS
GTATAGGTGGAAATCAGCGT+CGG 0.675940 4.2:+13462049 None:intergenic
ACGTTACCAGAAGGATGTGG+TGG 0.681851 4.2:+13462273 None:intergenic
CTAAAGGAAGTACTACCGGA+GGG 0.685931 4.2:+13461535 None:intergenic
GCTAAAGGAAGTACTACCGG+AGG 0.721504 4.2:+13461534 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGAATCTAAGGAAATTTT+TGG - chr4.2:13462283-13462302 MS.gene059368:CDS 20.0%
!!! GAAAATCTTGTTTGAAAATA+TGG + chr4.2:13461537-13461556 None:intergenic 20.0%
!!! TTTGAGGTAAATAAAAAAGA+AGG + chr4.2:13461489-13461508 None:intergenic 20.0%
! ATTCTCTATTACTACTTTCA+TGG - chr4.2:13461375-13461394 MS.gene059368:CDS 25.0%
! CATTCAATATAGTCATTTGA+AGG + chr4.2:13461724-13461743 None:intergenic 25.0%
! CTTCAAATGACTATATTGAA+TGG - chr4.2:13461722-13461741 MS.gene059368:intron 25.0%
!! ACATAAACAACAGAAGATTT+TGG + chr4.2:13461760-13461779 None:intergenic 25.0%
!!! GTTGAATTTTAAAGATGAGT+TGG - chr4.2:13461891-13461910 MS.gene059368:intron 25.0%
!!! TCTGTTGTTTATGTTTCTTT+TGG - chr4.2:13461766-13461785 MS.gene059368:intron 25.0%
!!! TTTGGTTTTGGTTATTGATA+TGG + chr4.2:13461410-13461429 None:intergenic 25.0%
!!! TTTTTATTTACCTCAAATCC+TGG - chr4.2:13461492-13461511 MS.gene059368:CDS 25.0%
AAAGAATGCAATGAAATGGA+AGG - chr4.2:13462219-13462238 MS.gene059368:CDS 30.0%
AAGAATGCAATGAAATGGAA+GGG - chr4.2:13462220-13462239 MS.gene059368:CDS 30.0%
ATAGAGAATATCAAACACTG+TGG + chr4.2:13461364-13461383 None:intergenic 30.0%
CAAAACTAATTGAAGATGTG+TGG - chr4.2:13462080-13462099 MS.gene059368:CDS 30.0%
GTTCTTTCACATTCTTTCTT+GGG - chr4.2:13461956-13461975 MS.gene059368:CDS 30.0%
TGAGAAAGAATGCAATGAAA+TGG - chr4.2:13462215-13462234 MS.gene059368:CDS 30.0%
! AAAGATGAGTTGGAAAAGAA+GGG - chr4.2:13461901-13461920 MS.gene059368:intron 30.0%
! AAGGTGTTTACGAGTATTAT+CGG + chr4.2:13461583-13461602 None:intergenic 30.0%
! TAAAGATGAGTTGGAAAAGA+AGG - chr4.2:13461900-13461919 MS.gene059368:intron 30.0%
! TTCCTTAGATTCTTTTTCTG+CGG + chr4.2:13462278-13462297 None:intergenic 30.0%
!! AATTAGAAAGTGTTTGGAAG+TGG - chr4.2:13462162-13462181 MS.gene059368:CDS 30.0%
!! ATTCAATGGTAGTTTGGTTT+TGG + chr4.2:13461428-13461447 None:intergenic 30.0%
!! GGATGAAATTAGAAAGTGTT+TGG - chr4.2:13462156-13462175 MS.gene059368:CDS 30.0%
!! TATAAGATTGGTGATGAAGT+CGG + chr4.2:13461219-13461238 None:intergenic 30.0%
AAAACAAAAGACAAGTCACC+AGG + chr4.2:13461513-13461532 None:intergenic 35.0%
AACCTCAAAATGATTCCCAT+CGG - chr4.2:13461649-13461668 MS.gene059368:CDS 35.0%
AGAATGCAATGAAATGGAAG+GGG - chr4.2:13462221-13462240 MS.gene059368:CDS 35.0%
AGTCATTTGAAGGTTGCAAT+AGG + chr4.2:13461714-13461733 None:intergenic 35.0%
ATTGAAGATGTGTGGAAGAT+AGG - chr4.2:13462088-13462107 MS.gene059368:CDS 35.0%
CAAACTACCATTGAATTACC+AGG - chr4.2:13461432-13461451 MS.gene059368:CDS 35.0%
CTGGTAATTCAATGGTAGTT+TGG + chr4.2:13461434-13461453 None:intergenic 35.0%
GAAAGGTTTGGATTCTTGTT+TGG + chr4.2:13461249-13461268 None:intergenic 35.0%
GAGGTTATGATGAGTATCAA+CGG + chr4.2:13461635-13461654 None:intergenic 35.0%
GGTTCTTTCACATTCTTTCT+TGG - chr4.2:13461955-13461974 MS.gene059368:CDS 35.0%
GTTTACGAGTATTATCGGAT+TGG + chr4.2:13461578-13461597 None:intergenic 35.0%
TGTTGAACTGTGAAGTGTAT+AGG + chr4.2:13461187-13461206 None:intergenic 35.0%
TTGAAGATGTGTGGAAGATA+GGG - chr4.2:13462089-13462108 MS.gene059368:CDS 35.0%
! AAAAAAGAAGGTATGTCACG+TGG + chr4.2:13461477-13461496 None:intergenic 35.0%
! AAGATGAGTTGGAAAAGAAG+GGG - chr4.2:13461902-13461921 MS.gene059368:intron 35.0%
! ACTTTGGAAAGTTTGGTATC+GGG - chr4.2:13462010-13462029 MS.gene059368:CDS 35.0%
! ATTGTGGGTTTTCATTCTTG+TGG - chr4.2:13461845-13461864 MS.gene059368:intron 35.0%
! GACTTTGGAAAGTTTGGTAT+CGG - chr4.2:13462009-13462028 MS.gene059368:CDS 35.0%
! TCCTTAGATTCTTTTTCTGC+GGG + chr4.2:13462277-13462296 None:intergenic 35.0%
! TTGTGGGTTTTCATTCTTGT+GGG - chr4.2:13461846-13461865 MS.gene059368:intron 35.0%
! TTTGGCAGAGAGTATAAGAT+TGG + chr4.2:13461231-13461250 None:intergenic 35.0%
!! AGTTGATGATAAAGTGGATG+AGG - chr4.2:13462117-13462136 MS.gene059368:CDS 35.0%
!!! GGTTGTTTTTTGACTCATTG+TGG - chr4.2:13461977-13461996 MS.gene059368:CDS 35.0%
!!! GTTTTTTGACTCATTGTGGT+TGG - chr4.2:13461981-13462000 MS.gene059368:CDS 35.0%
!!! TGGTAGTTTGGTTTTGGTTT+TGG + chr4.2:13461422-13461441 None:intergenic 35.0%
AAGTGTTTGGAAGTGGTGAT+GGG - chr4.2:13462169-13462188 MS.gene059368:CDS 40.0%
AGAATATCAAACACTGTGGC+GGG + chr4.2:13461360-13461379 None:intergenic 40.0%
ATGAGGATGGAATTGTAGGA+GGG - chr4.2:13462134-13462153 MS.gene059368:CDS 40.0%
CAAGTGCGTTGTTGAATTGT+GGG - chr4.2:13461830-13461849 MS.gene059368:intron 40.0%
CTACACGTTAATGCTTCCTT+GGG - chr4.2:13461280-13461299 MS.gene059368:intron 40.0%
GAGAATATCAAACACTGTGG+CGG + chr4.2:13461361-13461380 None:intergenic 40.0%
GAGTAAGCAAGTGAAAGGTT+TGG + chr4.2:13461261-13461280 None:intergenic 40.0%
GATGATAAAGTGGATGAGGA+TGG - chr4.2:13462121-13462140 MS.gene059368:CDS 40.0%
GGTCATGAGAGAAAAAGAAG+AGG - chr4.2:13461867-13461886 MS.gene059368:intron 40.0%
GTGTAGAGTAAGCAAGTGAA+AGG + chr4.2:13461266-13461285 None:intergenic 40.0%
TCCCGCAGAAAAAGAATCTA+AGG - chr4.2:13462273-13462292 MS.gene059368:CDS 40.0%
TCTACACGTTAATGCTTCCT+TGG - chr4.2:13461279-13461298 MS.gene059368:intron 40.0%
TGAACTGTGAAGTGTATAGG+TGG + chr4.2:13461184-13461203 None:intergenic 40.0%
TGAAGATGTGTGGAAGATAG+GGG - chr4.2:13462090-13462109 MS.gene059368:CDS 40.0%
! AAAGTGTTTGGAAGTGGTGA+TGG - chr4.2:13462168-13462187 MS.gene059368:CDS 40.0%
! AGATGAGTTGGAAAAGAAGG+GGG - chr4.2:13461903-13461922 MS.gene059368:intron 40.0%
! CTTTGGAAAGTTTGGTATCG+GGG - chr4.2:13462011-13462030 MS.gene059368:CDS 40.0%
! GAACTCGACTTTGGAAAGTT+TGG - chr4.2:13462003-13462022 MS.gene059368:CDS 40.0%
! GTCTTTTGATCAGTCCATTG+AGG + chr4.2:13462055-13462074 None:intergenic 40.0%
! TTTGGAAAGTTTGGTATCGG+GGG - chr4.2:13462012-13462031 MS.gene059368:CDS 40.0%
!! CGTAAACACCTTTGAAGCTT+TGG - chr4.2:13461591-13461610 MS.gene059368:CDS 40.0%
!! GGTGAGAGTTGATGATAAAG+TGG - chr4.2:13462111-13462130 MS.gene059368:CDS 40.0%
ACCCATTGATATGAGTCGCT+TGG + chr4.2:13461009-13461028 None:intergenic 45.0%
AGACAAGTCACCAGGATTTG+AGG + chr4.2:13461505-13461524 None:intergenic 45.0%
AGTGAAGTGGTGTTCTCAAG+TGG - chr4.2:13461931-13461950 MS.gene059368:CDS 45.0%
ATTGAAGGGCTGGGTTTATG+TGG + chr4.2:13460983-13461002 None:intergenic 45.0%
CAATCCAGAGTTTAGCTGAG+CGG + chr4.2:13461335-13461354 None:intergenic 45.0%
CATTGAGGAAATGCCACTAG+AGG + chr4.2:13462040-13462059 None:intergenic 45.0%
CTCTAGTGGCATTTCCTCAA+TGG - chr4.2:13462038-13462057 MS.gene059368:CDS 45.0%
GAGTCGCTTGGCAAATTGAA+GGG + chr4.2:13460997-13461016 None:intergenic 45.0%
GATGAGGATGGAATTGTAGG+AGG - chr4.2:13462133-13462152 MS.gene059368:CDS 45.0%
GCAAGTGCGTTGTTGAATTG+TGG - chr4.2:13461829-13461848 MS.gene059368:intron 45.0%
GCCAAGCGACTCATATCAAT+GGG - chr4.2:13461005-13461024 MS.gene059368:CDS 45.0%
GGGCAATCCTGGTAATTCAA+TGG + chr4.2:13461442-13461461 None:intergenic 45.0%
GTATAGGTGGAAATCAGCGT+CGG + chr4.2:13461171-13461190 None:intergenic 45.0%
GTGGATGAGGATGGAATTGT+AGG - chr4.2:13462130-13462149 MS.gene059368:CDS 45.0%
TCCGGTAGTACTTCCTTTAG+CGG - chr4.2:13461685-13461704 MS.gene059368:intron 45.0%
TGAATCCACGAGCTACTTGT+TGG + chr4.2:13461308-13461327 None:intergenic 45.0%
TGAGGATGGAATTGTAGGAG+GGG - chr4.2:13462135-13462154 MS.gene059368:CDS 45.0%
TGAGTCGCTTGGCAAATTGA+AGG + chr4.2:13460998-13461017 None:intergenic 45.0%
TGCAATGAAATGGAAGGGGT+TGG - chr4.2:13462225-13462244 MS.gene059368:CDS 45.0%
TGCCAAGCGACTCATATCAA+TGG - chr4.2:13461004-13461023 MS.gene059368:CDS 45.0%
TTGCAATAGGTCACCGCTAA+AGG + chr4.2:13461701-13461720 None:intergenic 45.0%
TTGTGGTTGGAACTCGACTT+TGG - chr4.2:13461994-13462013 MS.gene059368:CDS 45.0%
! AGTGTTTGGAAGTGGTGATG+GGG - chr4.2:13462170-13462189 MS.gene059368:CDS 45.0%
! GTCCGATGGGAATCATTTTG+AGG + chr4.2:13461654-13461673 None:intergenic 45.0%
! TTGGAGATGGTGGTTATGGA+TGG + chr4.2:13461089-13461108 None:intergenic 45.0%
!! ACCGCTAAAGGAAGTACTAC+CGG + chr4.2:13461689-13461708 None:intergenic 45.0%
!! CTAAAGGAAGTACTACCGGA+GGG + chr4.2:13461685-13461704 None:intergenic 45.0%
!! TGGATGGATTGAGGAGGATT+AGG + chr4.2:13461073-13461092 None:intergenic 45.0%
!! TGGTGGTTATGGATGGATTG+AGG + chr4.2:13461082-13461101 None:intergenic 45.0%
!! TGGTTATGGATGGATTGAGG+AGG + chr4.2:13461079-13461098 None:intergenic 45.0%
ACGTTACCAGAAGGATGTGG+TGG + chr4.2:13460947-13460966 None:intergenic 50.0%
ACTTCACAGTTCAACACCCG+TGG - chr4.2:13461191-13461210 MS.gene059368:intron 50.0%
GAAACCATCGTCATGGCCAT+CGG + chr4.2:13461132-13461151 None:intergenic 50.0%
GAAGGGGGAAGATAGTGAAG+TGG - chr4.2:13461918-13461937 MS.gene059368:intron 50.0%
GAAGTGGTGTTCTCAAGTGG+AGG - chr4.2:13461934-13461953 MS.gene059368:CDS 50.0%
GAGGGAATCAATGGTCCGAT+GGG + chr4.2:13461667-13461686 None:intergenic 50.0%
GATAGTGTGAAGGGCAATCC+TGG + chr4.2:13461453-13461472 None:intergenic 50.0%
GATTGAGGAGGATTAGGCGA+CGG + chr4.2:13461067-13461086 None:intergenic 50.0%
GCTTGGCAAATTGAAGGGCT+GGG + chr4.2:13460992-13461011 None:intergenic 50.0%
GGTACGTTACCAGAAGGATG+TGG + chr4.2:13460950-13460969 None:intergenic 50.0%
GGTTATGGAGAGGTTGGAGA+TGG + chr4.2:13461102-13461121 None:intergenic 50.0%
GTACTACCGGAGGGAATCAA+TGG + chr4.2:13461676-13461695 None:intergenic 50.0%
TATGGAGAGGTTGGAGATGG+TGG + chr4.2:13461099-13461118 None:intergenic 50.0%
TCACGTGGCGATAGTGTGAA+GGG + chr4.2:13461462-13461481 None:intergenic 50.0%
TGGCGATGAAACCATCGTCA+TGG + chr4.2:13461139-13461158 None:intergenic 50.0%
TTACCAGAAGGATGTGGTGG+TGG + chr4.2:13460944-13460963 None:intergenic 50.0%
! CTCTGGCTCCAAAGCTTCAA+AGG + chr4.2:13461602-13461621 None:intergenic 50.0%
! GAGGTTGGAGATGGTGGTTA+TGG + chr4.2:13461093-13461112 None:intergenic 50.0%
! GGTTTATGTGGCCTTGAGCT+GGG + chr4.2:13460971-13460990 None:intergenic 50.0%
!! ATCAGCGTCGGTCTTTGTGA+TGG + chr4.2:13461159-13461178 None:intergenic 50.0%
!! ATCGGACCATTGATTCCCTC+CGG - chr4.2:13461667-13461686 MS.gene059368:CDS 50.0%
!! CTTTGAAGCTTTGGAGCCAG+AGG - chr4.2:13461600-13461619 MS.gene059368:CDS 50.0%
!! GCTAAAGGAAGTACTACCGG+AGG + chr4.2:13461686-13461705 None:intergenic 50.0%
ACCTCCGCTCAGCTAAACTC+TGG - chr4.2:13461328-13461347 MS.gene059368:CDS 55.0%
ATCGTCATGGCCATCGGAGA+AGG + chr4.2:13461126-13461145 None:intergenic 55.0%
CGCTTGGCAAATTGAAGGGC+TGG + chr4.2:13460993-13461012 None:intergenic 55.0%
GAAGGGGGTTATGGAGAGGT+TGG + chr4.2:13461108-13461127 None:intergenic 55.0%
GAGCTGGGTACGTTACCAGA+AGG + chr4.2:13460956-13460975 None:intergenic 55.0%
GGAGGGAATCAATGGTCCGA+TGG + chr4.2:13461668-13461687 None:intergenic 55.0%
GTCACGTGGCGATAGTGTGA+AGG + chr4.2:13461463-13461482 None:intergenic 55.0%
TCCAGAGTTTAGCTGAGCGG+AGG + chr4.2:13461332-13461351 None:intergenic 55.0%
TCCATAACCCCCTTCTCCGA+TGG - chr4.2:13461113-13461132 MS.gene059368:CDS 55.0%
TCGTCATGGCCATCGGAGAA+GGG + chr4.2:13461125-13461144 None:intergenic 55.0%
TTCTCCGATGGCCATGACGA+TGG - chr4.2:13461125-13461144 MS.gene059368:CDS 55.0%
! CTGGTAACGTACCCAGCTCA+AGG - chr4.2:13460957-13460976 MS.gene059368:CDS 55.0%
! GAGCTACTTGTTGGAGCCCA+AGG + chr4.2:13461299-13461318 None:intergenic 55.0%
! GGGTTTATGTGGCCTTGAGC+TGG + chr4.2:13460972-13460991 None:intergenic 55.0%
! GTGATGGGGAGAGGAGAGAA+AGG - chr4.2:13462184-13462203 MS.gene059368:CDS 55.0%
! TGGTGATGAAGTCGGAGCCA+CGG + chr4.2:13461211-13461230 None:intergenic 55.0%
!! AAGGATGTGGTGGTGGTGGT+TGG + chr4.2:13460937-13460956 None:intergenic 55.0%
!! ATGGAAGGGGTTGGCTAGAG+AGG - chr4.2:13462234-13462253 MS.gene059368:CDS 55.0%
!! TCAACGGCTCTAAGTGCCTC+TGG + chr4.2:13461619-13461638 None:intergenic 55.0%
!! TTGGAAGTGGTGATGGGGAG+AGG - chr4.2:13462175-13462194 MS.gene059368:CDS 55.0%
AGAGAGGCAGGGAAGGAAGG+TGG - chr4.2:13462250-13462269 MS.gene059368:CDS 60.0%
CCACCACCACCACATCCTTC+TGG - chr4.2:13460938-13460957 MS.gene059368:CDS 60.0%
CGGAGAAGGGGGTTATGGAG+AGG + chr4.2:13461112-13461131 None:intergenic 60.0%
CGGTAGAGGTGGAGGGTGAT+AGG + chr4.2:13461047-13461066 None:intergenic 60.0%
CGTCATGGCCATCGGAGAAG+GGG + chr4.2:13461124-13461143 None:intergenic 60.0%
GCCATCGGAGAAGGGGGTTA+TGG + chr4.2:13461117-13461136 None:intergenic 60.0%
GCTAGAGAGGCAGGGAAGGA+AGG - chr4.2:13462247-13462266 MS.gene059368:CDS 60.0%
GGAGGATTAGGCGACGGTAG+AGG + chr4.2:13461061-13461080 None:intergenic 60.0%
GGATTAGGCGACGGTAGAGG+TGG + chr4.2:13461058-13461077 None:intergenic 60.0%
GGGCTCCAACAAGTAGCTCG+TGG - chr4.2:13461300-13461319 MS.gene059368:CDS 60.0%
GGGGAGAGGAGAGAAAGGAG+AGG - chr4.2:13462189-13462208 MS.gene059368:CDS 60.0%
GGTGATGAAGTCGGAGCCAC+GGG + chr4.2:13461210-13461229 None:intergenic 60.0%
GTCATGGCCATCGGAGAAGG+GGG + chr4.2:13461123-13461142 None:intergenic 60.0%
GTTGGCTAGAGAGGCAGGGA+AGG - chr4.2:13462243-13462262 MS.gene059368:CDS 60.0%
TAGGCGACGGTAGAGGTGGA+GGG + chr4.2:13461054-13461073 None:intergenic 60.0%
TTAGGCGACGGTAGAGGTGG+AGG + chr4.2:13461055-13461074 None:intergenic 60.0%
! GGTATCGGGGGTTCCTCTAG+TGG - chr4.2:13462024-13462043 MS.gene059368:CDS 60.0%
!! AAGGGGTTGGCTAGAGAGGC+AGG - chr4.2:13462238-13462257 MS.gene059368:CDS 60.0%
!! AGGGGTTGGCTAGAGAGGCA+GGG - chr4.2:13462239-13462258 MS.gene059368:CDS 60.0%
!! CCAGAAGGATGTGGTGGTGG+TGG + chr4.2:13460941-13460960 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 13460930 13462309 13460930 ID=MS.gene059368
chr4.2 mRNA 13460930 13462309 13460930 ID=MS.gene059368.t1;Parent=MS.gene059368
chr4.2 exon 13461928 13462309 13461928 ID=MS.gene059368.t1.exon1;Parent=MS.gene059368.t1
chr4.2 CDS 13461928 13462309 13461928 ID=cds.MS.gene059368.t1;Parent=MS.gene059368.t1
chr4.2 exon 13461284 13461688 13461284 ID=MS.gene059368.t1.exon2;Parent=MS.gene059368.t1
chr4.2 CDS 13461284 13461688 13461284 ID=cds.MS.gene059368.t1;Parent=MS.gene059368.t1
chr4.2 exon 13460930 13461195 13460930 ID=MS.gene059368.t1.exon3;Parent=MS.gene059368.t1
chr4.2 CDS 13460930 13461195 13460930 ID=cds.MS.gene059368.t1;Parent=MS.gene059368.t1
Gene Sequence

>MS.gene059368

ATGTCCAACCACCACCACCACATCCTTCTGGTAACGTACCCAGCTCAAGGCCACATAAACCCAGCCCTTCAATTTGCCAAGCGACTCATATCAATGGGTGCACATGTCACTCTTCCTATCACCCTCCACCTCTACCGTCGCCTAATCCTCCTCAATCCATCCATAACCACCATCTCCAACCTCTCCATAACCCCCTTCTCCGATGGCCATGACGATGGTTTCATCGCCATCACAAAGACCGACGCTGATTTCCACCTATACACTTCACAGTTCAACACCCGTGGCTCCGACTTCATCACCAATCTTATACTCTCTGCCAAACAAGAATCCAAACCTTTCACTTGCTTACTCTACACGTTAATGCTTCCTTGGGCTCCAACAAGTAGCTCGTGGATTCAACCTCCGCTCAGCTAAACTCTGGATTGAACCCGCCACAGTGTTTGATATTCTCTATTACTACTTTCATGGTTATAGTAACCATATCAATAACCAAAACCAAAACCAAACTACCATTGAATTACCAGGATTGCCCTTCACACTATCGCCACGTGACATACCTTCTTTTTTATTTACCTCAAATCCTGGTGACTTGTCTTTTGTTTTTCCATATTTTCAAACAAGATTTTCATGAACTCGATGTTGAAACCAATCCGATAATACTCGTAAACACCTTTGAAGCTTTGGAGCCAGAGGCACTTAGAGCCGTTGATACTCATCATAACCTCAAAATGATTCCCATCGGACCATTGATTCCCTCCGGTAGTACTTCCTTTAGCGGTGACCTATTGCAACCTTCAAATGACTATATTGAATGGTTGAACTCAAAGCCAAAATCTTCTGTTGTTTATGTTTCTTTTGGTAGTTACTTTGTTTTGTCTAAGCGACAAACAGACGAAATTGCAAGTGCGTTGTTGAATTGTGGGTTTTCATTCTTGTGGGTCATGAGAGAAAAAGAAGAGGAGTTGAATTTTAAAGATGAGTTGGAAAAGAAGGGGGAAGATAGTGAAGTGGTGTTCTCAAGTGGAGGTTCTTTCACATTCTTTCTTGGGTTGTTTTTTGACTCATTGTGGTTGGAACTCGACTTTGGAAAGTTTGGTATCGGGGGTTCCTCTAGTGGCATTTCCTCAATGGACTGATCAAAAGACTAATGCAAAACTAATTGAAGATGTGTGGAAGATAGGGGTGAGAGTTGATGATAAAGTGGATGAGGATGGAATTGTAGGAGGGGATGAAATTAGAAAGTGTTTGGAAGTGGTGATGGGGAGAGGAGAGAAAGGAGAGGAATTGAGAAAGAATGCAATGAAATGGAAGGGGTTGGCTAGAGAGGCAGGGAAGGAAGGTGGTCCCGCAGAAAAAGAATCTAAGGAAATTTTTGGATGA

Protein sequence

>MS.gene059368.t1

MSNHHHHILLVTYPAQGHINPALQFAKRLISMGAHVTLPITLHLYRRLILLNPSITTISNLSITPFSDGHDDGFIAITKTDADFHLYTSQFNTRGSDFITNLILSAKQESKPFTCLLYTLMLPWAPTNFHELDVETNPIILVNTFEALEPEALRAVDTHHNLKMIPIGPLIPSGSTSFSGDLLQPSNDYIEWLNSKPKSSVVYVSFGSYFVLSKRQTDEIASALLNCGFSFLWVMREKEEELNFKDELEKKGEDSEVVFSSGVAFPQWTDQKTNAKLIEDVWKIGVRVDDKVDEDGIVGGDEIRKCLEVVMGRGEKGEELRKNAMKWKGLAREAGKEGGPAEKESKEIFG