Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35364.t1 | KEH38942.1 | 85.6 | 285 | 28 | 4 | 1 | 278 | 1 | 279 | 3.00E-59 | 238.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35364.t1 | Q8LJS2 | 58.4 | 298 | 101 | 4 | 1 | 278 | 1 | 295 | 4.1e-41 | 169.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35364.t1 | A0A072VB01 | 85.6 | 285 | 28 | 4 | 1 | 278 | 1 | 279 | 2.2e-59 | 238.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene35364.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050985 | MS.gene35364 | 0.810348 | 1.21E-50 | -1.69E-46 |
| MS.gene054937 | MS.gene35364 | 0.831963 | 1.24E-55 | -1.69E-46 |
| MS.gene056075 | MS.gene35364 | 0.816825 | 4.53E-52 | -1.69E-46 |
| MS.gene057052 | MS.gene35364 | 0.800045 | 1.73E-48 | -1.69E-46 |
| MS.gene058245 | MS.gene35364 | 0.8269 | 2.10E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35364.t1 | MTR_2g084815 | 81.699 | 306 | 24 | 5 | 1 | 278 | 1 | 302 | 7.45e-148 | 416 |
| MS.gene35364.t1 | MTR_2g084815 | 85.714 | 287 | 24 | 5 | 1 | 278 | 1 | 279 | 5.74e-147 | 413 |
| MS.gene35364.t1 | MTR_2g084815 | 80.162 | 247 | 17 | 5 | 1 | 219 | 1 | 243 | 1.15e-101 | 297 |
| MS.gene35364.t1 | MTR_2g084815 | 77.982 | 218 | 16 | 5 | 1 | 190 | 1 | 214 | 7.34e-80 | 241 |
| MS.gene35364.t1 | MTR_4g055440 | 47.773 | 247 | 116 | 5 | 1 | 244 | 5 | 241 | 9.06e-55 | 178 |
| MS.gene35364.t1 | MTR_8g069135 | 81.905 | 105 | 12 | 3 | 118 | 220 | 23 | 122 | 1.53e-34 | 127 |
| MS.gene35364.t1 | MTR_4g055450 | 40.299 | 201 | 89 | 4 | 2 | 186 | 6 | 191 | 2.01e-27 | 109 |
| MS.gene35364.t1 | MTR_4g055450 | 52.083 | 96 | 35 | 4 | 183 | 275 | 270 | 357 | 7.25e-14 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35364.t1 | AT5G03740 | 41.694 | 307 | 134 | 11 | 1 | 277 | 1 | 292 | 4.45e-46 | 157 |
| MS.gene35364.t1 | AT5G22650 | 41.216 | 296 | 129 | 11 | 1 | 263 | 1 | 284 | 5.42e-36 | 130 |
| MS.gene35364.t1 | AT5G22650 | 41.077 | 297 | 129 | 12 | 1 | 263 | 1 | 285 | 3.02e-34 | 126 |
| MS.gene35364.t1 | AT3G44750 | 51.087 | 92 | 42 | 2 | 1 | 92 | 1 | 89 | 2.36e-23 | 95.9 |
| MS.gene35364.t1 | AT3G44750 | 51.087 | 92 | 42 | 2 | 1 | 92 | 1 | 89 | 2.50e-23 | 95.9 |
| MS.gene35364.t1 | AT2G27840 | 42.222 | 90 | 47 | 3 | 1 | 88 | 1 | 87 | 2.29e-15 | 72.4 |
| MS.gene35364.t1 | AT2G27840 | 42.222 | 90 | 47 | 3 | 1 | 88 | 1 | 87 | 2.53e-15 | 71.6 |
| MS.gene35364.t1 | AT2G27840 | 42.222 | 90 | 47 | 3 | 1 | 88 | 1 | 87 | 3.35e-15 | 72.8 |
Find 59 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTGTTTCCAATGGAGTTT+TGG | 0.108547 | 2.3:-13053088 | None:intergenic |
| TCCTCCAGACTTGGGAGTTT+TGG | 0.188316 | 2.3:+13049999 | None:intergenic |
| GGAGTCTTTCCACCTTTCTT+AGG | 0.193593 | 2.3:+13050033 | None:intergenic |
| GAAACCTTCTCCTCTGCTTT+TGG | 0.243625 | 2.3:+13051776 | None:intergenic |
| TCTTCATCTTCCTCCTCCTT+TGG | 0.280167 | 2.3:+13051692 | None:intergenic |
| GAAGGTTTCTGAACCTAAAA+AGG | 0.290028 | 2.3:-13051762 | MS.gene35364:CDS |
| GATGAATCTGATGATGAAAA+TGG | 0.302701 | 2.3:-13051653 | MS.gene35364:CDS |
| TGGGGAACAAAAGCTTGTTT+TGG | 0.309523 | 2.3:-13052558 | MS.gene35364:CDS |
| CATTGGGCCTCTTCTTTCCC+TGG | 0.324129 | 2.3:+13051174 | None:intergenic |
| TTTGATTTCTTGGAAGAAAC+TGG | 0.327081 | 2.3:+13051134 | None:intergenic |
| TGAATTAGGTGCTGAGGTTA+AGG | 0.360277 | 2.3:-13052797 | MS.gene35364:intron |
| TTTAGCAGGTGCAGCATTCT+TGG | 0.365068 | 2.3:+13051733 | None:intergenic |
| AGGACATTCAACTCTGAAAC+TGG | 0.374828 | 2.3:-13049859 | MS.gene35364:CDS |
| TGGTTATTTACCTCAAAGTT+GGG | 0.376973 | 2.3:-13052577 | MS.gene35364:CDS |
| GCAGCTGCTTCAAGGTCATA+TGG | 0.394188 | 2.3:+13052751 | None:intergenic |
| GAGTCTTTCCACCTTTCTTA+GGG | 0.394889 | 2.3:+13050034 | None:intergenic |
| GAAATGAACACTAGCAGCTT+TGG | 0.398995 | 2.3:+13052457 | None:intergenic |
| TGTGAATAGCAGCTGCTTCA+AGG | 0.402299 | 2.3:+13052743 | None:intergenic |
| TAAATAACCACAGGCTCGTT+TGG | 0.405456 | 2.3:+13052590 | None:intergenic |
| TTGGTCTCACCAGTCTTCTC+AGG | 0.407469 | 2.3:+13051101 | None:intergenic |
| GTGGTTATTTACCTCAAAGT+TGG | 0.423882 | 2.3:-13052578 | MS.gene35364:CDS |
| TTGATTACCACAGAGCAAAA+TGG | 0.430501 | 2.3:-13051900 | MS.gene35364:intron |
| GATGCCAAAACTCCCAAGTC+TGG | 0.432291 | 2.3:-13050003 | MS.gene35364:CDS |
| AGCTGCTATTCACATTTCTC+AGG | 0.433247 | 2.3:-13052734 | MS.gene35364:intron |
| TTTGCTCTGTGGTAATCAAT+GGG | 0.454741 | 2.3:+13051904 | None:intergenic |
| TCTTGATATTGTCCTTGAAA+AGG | 0.456315 | 2.3:-13052501 | MS.gene35364:CDS |
| TTGTCAGATGGTAAGAAAGC+TGG | 0.456417 | 2.3:-13050075 | MS.gene35364:intron |
| TTAGGTGCTGAGGTTAAGGT+TGG | 0.459431 | 2.3:-13052793 | MS.gene35364:intron |
| AGAGAGTCCTCCTCCAGACT+TGG | 0.471298 | 2.3:+13049990 | None:intergenic |
| TTTCCACCTTTCTTAGGGTG+AGG | 0.472414 | 2.3:+13050039 | None:intergenic |
| ACTTCACTTAGCAGCATGCT+TGG | 0.492494 | 2.3:+13049816 | None:intergenic |
| ACAACCTTCACGTGTTTAGC+AGG | 0.509884 | 2.3:+13051719 | None:intergenic |
| TGAGAGTGATGAGGATGATG+AGG | 0.510768 | 2.3:-13051317 | MS.gene35364:CDS |
| AGAACCAAAAGCAGAGGAGA+AGG | 0.523090 | 2.3:-13051780 | MS.gene35364:CDS |
| GGAAGAGACTCCTGTGAAGA+AGG | 0.527324 | 2.3:-13051296 | MS.gene35364:intron |
| TGTGCCATTACCTTCTTCAC+AGG | 0.535491 | 2.3:+13051286 | None:intergenic |
| CAGCTGCTTCAAGGTCATAT+GGG | 0.543766 | 2.3:+13052752 | None:intergenic |
| CTCACCAGTCTTCTCAGGAG+TGG | 0.560433 | 2.3:+13051106 | None:intergenic |
| GAGAGTCCTCCTCCAGACTT+GGG | 0.565423 | 2.3:+13049991 | None:intergenic |
| AGGTTACCCCAAAACTCCAT+TGG | 0.575655 | 2.3:+13053080 | None:intergenic |
| GCAACTCCTCACCCTAAGAA+AGG | 0.575686 | 2.3:-13050045 | MS.gene35364:CDS |
| AATGCCACTCCTGAGAAGAC+TGG | 0.575986 | 2.3:-13051110 | MS.gene35364:intron |
| AAAACTCCCAAGTCTGGAGG+AGG | 0.583660 | 2.3:-13049997 | MS.gene35364:CDS |
| CGTGAAGGTTGTTGATCCAA+AGG | 0.584807 | 2.3:-13051708 | MS.gene35364:CDS |
| GGTTGTTGATCCAAAGGAGG+AGG | 0.590224 | 2.3:-13051702 | MS.gene35364:CDS |
| GTTATTGTATAGGTTGCACT+TGG | 0.600855 | 2.3:-13052632 | MS.gene35364:intron |
| GGTTATTTACCTCAAAGTTG+GGG | 0.606552 | 2.3:-13052576 | MS.gene35364:CDS |
| AAAACCAGAACCAAAAGCAG+AGG | 0.625041 | 2.3:-13051786 | MS.gene35364:CDS |
| TGGACTGCAACAACATAGCA+AGG | 0.629185 | 2.3:-13049839 | MS.gene35364:CDS |
| ACTCCTCACCCTAAGAAAGG+TGG | 0.633029 | 2.3:-13050042 | MS.gene35364:CDS |
| AGATGAAGATGAGAGTGATG+AGG | 0.643600 | 2.3:-13051326 | MS.gene35364:CDS |
| AAATGGAAGCTCTGATGATG+AGG | 0.649458 | 2.3:-13051636 | MS.gene35364:intron |
| TGCACCTGCTAAACACGTGA+AGG | 0.650932 | 2.3:-13051723 | MS.gene35364:CDS |
| GCCAAAACTCCCAAGTCTGG+AGG | 0.652249 | 2.3:-13050000 | MS.gene35364:CDS |
| ACTTTGAGGTAAATAACCAC+AGG | 0.655718 | 2.3:+13052581 | None:intergenic |
| AGACAAACCAAACGAGCCTG+TGG | 0.660313 | 2.3:-13052597 | MS.gene35364:CDS |
| ACAATATCAAGAGAAATCTG+AGG | 0.664546 | 2.3:+13052512 | None:intergenic |
| GAAGGTTGTTGATCCAAAGG+AGG | 0.676188 | 2.3:-13051705 | MS.gene35364:CDS |
| AGGTTGACCAGGGAAAGAAG+AGG | 0.740019 | 2.3:-13051181 | MS.gene35364:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTTAAACACAAATTA+CGG | + | chr2.3:13052803-13052822 | None:intergenic | 10.0% |
| !!! | ATATATTTATTACTTTTAGA+TGG | - | chr2.3:13052971-13052990 | MS.gene35364:intron | 10.0% |
| !!! | TAATAGTTTACATTTTATAT+TGG | - | chr2.3:13050787-13050806 | MS.gene35364:intron | 10.0% |
| !!! | TACATTTCATTTTTAAATTA+CGG | - | chr2.3:13052468-13052487 | MS.gene35364:CDS | 10.0% |
| !!! | TATATTTATTACTTTTAGAT+GGG | - | chr2.3:13052972-13052991 | MS.gene35364:intron | 10.0% |
| !!! | TGTTTTTCTTTTTTAAATTA+CGG | + | chr2.3:13052630-13052649 | None:intergenic | 10.0% |
| !! | AAACAATATATAACACAATT+TGG | + | chr2.3:13051817-13051836 | None:intergenic | 15.0% |
| !! | AAAGTAATAAATATATGCTT+CGG | + | chr2.3:13052967-13052986 | None:intergenic | 15.0% |
| !! | AACTATATAATAACAAATCA+AGG | + | chr2.3:13050501-13050520 | None:intergenic | 15.0% |
| !! | TATAATTATTATGGTTACTA+TGG | - | chr2.3:13051658-13051677 | MS.gene35364:CDS | 15.0% |
| !!! | TAAGTGTGAATTTTAAATTA+TGG | + | chr2.3:13052578-13052597 | None:intergenic | 15.0% |
| !!! | TATTTTCTAATTAGACAAAA+AGG | + | chr2.3:13051846-13051865 | None:intergenic | 15.0% |
| !!! | TTAAATTATGGACTATATAA+CGG | + | chr2.3:13052566-13052585 | None:intergenic | 15.0% |
| !!! | TTTTTGTTGATATTTTTCTA+AGG | - | chr2.3:13050530-13050549 | MS.gene35364:intron | 15.0% |
| !! | AAGTAATAAATATATGCTTC+GGG | + | chr2.3:13052966-13052985 | None:intergenic | 20.0% |
| !! | AGACAAAAACAAAAAAAGAA+AGG | + | chr2.3:13053008-13053027 | None:intergenic | 20.0% |
| !! | TATTTAGTGTTCTCAATTTA+GGG | - | chr2.3:13051436-13051455 | MS.gene35364:intron | 20.0% |
| !! | TGTAAATTGTTAAATTGTGT+TGG | - | chr2.3:13052215-13052234 | MS.gene35364:intron | 20.0% |
| !! | TTATTTAGTGTTCTCAATTT+AGG | - | chr2.3:13051435-13051454 | MS.gene35364:intron | 20.0% |
| !!! | AAATAACCATTGTTCTTTTT+AGG | - | chr2.3:13051087-13051106 | MS.gene35364:intron | 20.0% |
| !!! | CGTCTTTTTTTTTTTTTTGA+AGG | - | chr2.3:13051695-13051714 | MS.gene35364:CDS | 20.0% |
| !!! | TAAATTATGGACTATATAAC+GGG | + | chr2.3:13052565-13052584 | None:intergenic | 20.0% |
| !!! | TATACGTTGATTTTTGAATT+AGG | - | chr2.3:13050085-13050104 | MS.gene35364:intron | 20.0% |
| !!! | TTTATGTTGATAATTGTAGA+TGG | - | chr2.3:13051531-13051550 | MS.gene35364:intron | 20.0% |
| ! | AACTTGTATTCAAGTGTATT+AGG | - | chr2.3:13050041-13050060 | MS.gene35364:CDS | 25.0% |
| ! | ACTTGTATTCAAGTGTATTA+GGG | - | chr2.3:13050042-13050061 | MS.gene35364:CDS | 25.0% |
| ! | ATTTAGATAACAGATCTGTA+AGG | + | chr2.3:13050752-13050771 | None:intergenic | 25.0% |
| ! | GAAGGATATATATCTACATA+TGG | + | chr2.3:13052770-13052789 | None:intergenic | 25.0% |
| ! | TCAAAAATCAAAGAGTAGTT+CGG | + | chr2.3:13049954-13049973 | None:intergenic | 25.0% |
| ! | TCAAACGATGTTTCAATTTA+GGG | + | chr2.3:13052698-13052717 | None:intergenic | 25.0% |
| ! | TTCAAACGATGTTTCAATTT+AGG | + | chr2.3:13052699-13052718 | None:intergenic | 25.0% |
| ! | TTGTAGGTTTACTAAATTTC+TGG | - | chr2.3:13050236-13050255 | MS.gene35364:intron | 25.0% |
| !! | ACATTTGTTAAATGTGCTAT+TGG | - | chr2.3:13051408-13051427 | MS.gene35364:intron | 25.0% |
| !! | CATTTGTTAAATGTGCTATT+GGG | - | chr2.3:13051409-13051428 | MS.gene35364:intron | 25.0% |
| !! | GTGTTTAAATTTTTGTCAGA+TGG | - | chr2.3:13052809-13052828 | MS.gene35364:intron | 25.0% |
| !!! | TCTGAATTTTTTTGTTGGTT+GGG | - | chr2.3:13051036-13051055 | MS.gene35364:intron | 25.0% |
| !!! | TGTTTTTGTCTTTAATTACC+AGG | - | chr2.3:13053017-13053036 | MS.gene35364:intron | 25.0% |
| !!! | TTGATCAATGTTTTGTTTAG+TGG | - | chr2.3:13051286-13051305 | MS.gene35364:intron | 25.0% |
| !!! | TTGTCATGCAATTGTTTTTA+AGG | - | chr2.3:13050892-13050911 | MS.gene35364:intron | 25.0% |
| !!! | TTTGTGTTGTTTATAGATCA+TGG | - | chr2.3:13051974-13051993 | MS.gene35364:intron | 25.0% |
| AATTACGGATGTGTAATAGA+AGG | + | chr2.3:13052788-13052807 | None:intergenic | 30.0% | |
| ACAAAAAAATTCAGACCAAG+AGG | + | chr2.3:13051031-13051050 | None:intergenic | 30.0% | |
| ACAATATCAAGAGAAATCTG+AGG | + | chr2.3:13050387-13050406 | None:intergenic | 30.0% | |
| AGGTTAGATTAAGATTGTGT+TGG | - | chr2.3:13050912-13050931 | MS.gene35364:intron | 30.0% | |
| ATGATGTCAATATACACGTT+AGG | + | chr2.3:13050648-13050667 | None:intergenic | 30.0% | |
| ATTATGGTTACTATGGTGAT+TGG | - | chr2.3:13051665-13051684 | MS.gene35364:CDS | 30.0% | |
| ATTGCATGACAAATTTCAGA+TGG | + | chr2.3:13050884-13050903 | None:intergenic | 30.0% | |
| CCAAAACACATCAATAGTTA+AGG | + | chr2.3:13050829-13050848 | None:intergenic | 30.0% | |
| GATGACAAATAGACTAATCT+GGG | + | chr2.3:13050607-13050626 | None:intergenic | 30.0% | |
| GTGTTAGATATTAAGAAAGC+TGG | - | chr2.3:13052376-13052395 | MS.gene35364:intron | 30.0% | |
| TATTCACATTTCTCAGGTTA+GGG | - | chr2.3:13050168-13050187 | MS.gene35364:intron | 30.0% | |
| TCTTGATATTGTCCTTGAAA+AGG | - | chr2.3:13050395-13050414 | MS.gene35364:intron | 30.0% | |
| TGGTTATTTACCTCAAAGTT+GGG | - | chr2.3:13050319-13050338 | MS.gene35364:intron | 30.0% | |
| ! | CCTTAACTATTGATGTGTTT+TGG | - | chr2.3:13050826-13050845 | MS.gene35364:intron | 30.0% |
| ! | GATGAATCTGATGATGAAAA+TGG | - | chr2.3:13051243-13051262 | MS.gene35364:intron | 30.0% |
| ! | GGTTTTCCTAAAAAGAACAA+TGG | + | chr2.3:13051096-13051115 | None:intergenic | 30.0% |
| ! | TCTGGTTTGTGTTATTGTAT+AGG | - | chr2.3:13050254-13050273 | MS.gene35364:intron | 30.0% |
| ! | TTTGATTTCTTGGAAGAAAC+TGG | + | chr2.3:13051765-13051784 | None:intergenic | 30.0% |
| ! | TTTGTGTTGTTGATAGATCA+TGG | - | chr2.3:13052026-13052045 | MS.gene35364:intron | 30.0% |
| !! | GTTCTAAGTTGTGTTTTTGT+AGG | - | chr2.3:13050220-13050239 | MS.gene35364:intron | 30.0% |
| !! | TATAAGTTGTCCATTTTTGC+TGG | - | chr2.3:13051317-13051336 | MS.gene35364:CDS | 30.0% |
| !!! | AGTGGCATTTTTTGATTTCT+TGG | + | chr2.3:13051775-13051794 | None:intergenic | 30.0% |
| !!! | AGTTTTTGAAGCAGATTCAT+TGG | + | chr2.3:13051742-13051761 | None:intergenic | 30.0% |
| !!! | CTTGGTCTGAATTTTTTTGT+TGG | - | chr2.3:13051031-13051050 | MS.gene35364:intron | 30.0% |
| !!! | GTCTGAATTTTTTTGTTGGT+TGG | - | chr2.3:13051035-13051054 | MS.gene35364:intron | 30.0% |
| !!! | GTTTTTGAAGCAGATTCATT+GGG | + | chr2.3:13051741-13051760 | None:intergenic | 30.0% |
| !!! | TTTTTTTTGAAGGTTGACCA+GGG | - | chr2.3:13051705-13051724 | MS.gene35364:CDS | 30.0% |
| !!! | TTTTTTTTTGAAGGTTGACC+AGG | - | chr2.3:13051704-13051723 | MS.gene35364:CDS | 30.0% |
| AAAACAAGTCATCGTCTGAA+AGG | + | chr2.3:13049865-13049884 | None:intergenic | 35.0% | |
| AATGTAAGAACTCGTGCAAA+TGG | + | chr2.3:13051902-13051921 | None:intergenic | 35.0% | |
| ACATGCATAATCAAGACTGA+AGG | + | chr2.3:13051352-13051371 | None:intergenic | 35.0% | |
| ATAACGAAAGGAGAAAGATG+AGG | + | chr2.3:13049839-13049858 | None:intergenic | 35.0% | |
| CATGTCAATGCTGAAATTTG+AGG | - | chr2.3:13052724-13052743 | MS.gene35364:intron | 35.0% | |
| CTATTCACATTTCTCAGGTT+AGG | - | chr2.3:13050167-13050186 | MS.gene35364:intron | 35.0% | |
| GAAGGTTTCTGAACCTAAAA+AGG | - | chr2.3:13051134-13051153 | MS.gene35364:CDS | 35.0% | |
| GGATGACAAATAGACTAATC+TGG | + | chr2.3:13050608-13050627 | None:intergenic | 35.0% | |
| GGTTATTTACCTCAAAGTTG+GGG | - | chr2.3:13050320-13050339 | MS.gene35364:intron | 35.0% | |
| GTGGTTATTTACCTCAAAGT+TGG | - | chr2.3:13050318-13050337 | MS.gene35364:intron | 35.0% | |
| GTTATTGTATAGGTTGCACT+TGG | - | chr2.3:13050264-13050283 | MS.gene35364:intron | 35.0% | |
| TCTGAAAGGTAGATAACGAA+AGG | + | chr2.3:13049851-13049870 | None:intergenic | 35.0% | |
| TTGATTACCACAGAGCAAAA+TGG | - | chr2.3:13050996-13051015 | MS.gene35364:intron | 35.0% | |
| TTTGCTCTGTGGTAATCAAT+GGG | + | chr2.3:13050995-13051014 | None:intergenic | 35.0% | |
| ! | ACTGTGTTGTTGATAGATCA+TGG | - | chr2.3:13051922-13051941 | MS.gene35364:CDS | 35.0% |
| ! | AGGAATTTTGTCCCTGTTTA+GGG | + | chr2.3:13050367-13050386 | None:intergenic | 35.0% |
| ! | ATAGATCATGGATTGATGCT+TGG | - | chr2.3:13051934-13051953 | MS.gene35364:intron | 35.0% |
| ! | ATAGCTCAAACTCCTTTTCA+AGG | + | chr2.3:13050410-13050429 | None:intergenic | 35.0% |
| ! | GTTTCAATTTAGGGTGTGTT+TGG | + | chr2.3:13052689-13052708 | None:intergenic | 35.0% |
| ! | TAGATCATGGATTGATGCTT+GGG | - | chr2.3:13051935-13051954 | MS.gene35364:intron | 35.0% |
| ! | TTTTGCTCTGTGGTAATCAA+TGG | + | chr2.3:13050996-13051015 | None:intergenic | 35.0% |
| !! | AATGTAGCTTGTTTGCATCA+TGG | - | chr2.3:13052278-13052297 | MS.gene35364:intron | 35.0% |
| !! | ACTTTGAGGTAAATAACCAC+AGG | + | chr2.3:13050318-13050337 | None:intergenic | 35.0% |
| !! | ATTGTAGTTTGTTTCCGTCA+TGG | - | chr2.3:13052155-13052174 | MS.gene35364:intron | 35.0% |
| !! | GATTTTTGAATTAGGTGCTG+AGG | - | chr2.3:13050093-13050112 | MS.gene35364:intron | 35.0% |
| !! | GTTTAGTTTGTTGCTATCCT+AGG | - | chr2.3:13050724-13050743 | MS.gene35364:intron | 35.0% |
| AAAACCAGAACCAAAAGCAG+AGG | - | chr2.3:13051110-13051129 | MS.gene35364:intron | 40.0% | |
| AAATGGTATGGGTTTCCTCT+TGG | - | chr2.3:13051013-13051032 | MS.gene35364:intron | 40.0% | |
| AAGCAAGCATGAATCCATGA+CGG | + | chr2.3:13052172-13052191 | None:intergenic | 40.0% | |
| ACCACAGAGCAAAATGGTAT+GGG | - | chr2.3:13051002-13051021 | MS.gene35364:intron | 40.0% | |
| AGATGAAGATGAGAGTGATG+AGG | - | chr2.3:13051570-13051589 | MS.gene35364:intron | 40.0% | |
| AGCTGCTATTCACATTTCTC+AGG | - | chr2.3:13050162-13050181 | MS.gene35364:intron | 40.0% | |
| AGTTTCAGAGTTGAATGTCC+TGG | + | chr2.3:13053038-13053057 | None:intergenic | 40.0% | |
| GAAATGAACACTAGCAGCTT+TGG | + | chr2.3:13050442-13050461 | None:intergenic | 40.0% | |
| GACATCATTGCCAGCAAAAA+TGG | + | chr2.3:13051330-13051349 | None:intergenic | 40.0% | |
| GAGTCTTTCCACCTTTCTTA+GGG | + | chr2.3:13052865-13052884 | None:intergenic | 40.0% | |
| GTCTTCTTTATGCATGTCTG+AGG | - | chr2.3:13051489-13051508 | MS.gene35364:intron | 40.0% | |
| TAAATAACCACAGGCTCGTT+TGG | + | chr2.3:13050309-13050328 | None:intergenic | 40.0% | |
| TACCACAGAGCAAAATGGTA+TGG | - | chr2.3:13051001-13051020 | MS.gene35364:intron | 40.0% | |
| TAGGCTATTGTTGCAACACT+AGG | + | chr2.3:13050629-13050648 | None:intergenic | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | + | chr2.3:13052675-13052694 | None:intergenic | 40.0% | |
| TTAGGGTGTGTTTGGATTGA+GGG | + | chr2.3:13052681-13052700 | None:intergenic | 40.0% | |
| TTGTCAGATGGTAAGAAAGC+TGG | - | chr2.3:13052821-13052840 | MS.gene35364:intron | 40.0% | |
| TTTGGATTGAGGGTTTAGGA+GGG | + | chr2.3:13052671-13052690 | None:intergenic | 40.0% | |
| ! | AAATGGAAGCTCTGATGATG+AGG | - | chr2.3:13051260-13051279 | MS.gene35364:intron | 40.0% |
| ! | GAGGAATTTTGTCCCTGTTT+AGG | + | chr2.3:13050368-13050387 | None:intergenic | 40.0% |
| ! | TTCTTGGCATCAGCCTTTTT+AGG | + | chr2.3:13051150-13051169 | None:intergenic | 40.0% |
| ! | TTTAGGGTGTGTTTGGATTG+AGG | + | chr2.3:13052682-13052701 | None:intergenic | 40.0% |
| !! | AGGACATTCAACTCTGAAAC+TGG | - | chr2.3:13053037-13053056 | MS.gene35364:intron | 40.0% |
| !! | GGGGAACAAAAGCTTGTTTT+GGG | - | chr2.3:13050339-13050358 | MS.gene35364:intron | 40.0% |
| !! | TGAATTAGGTGCTGAGGTTA+AGG | - | chr2.3:13050099-13050118 | MS.gene35364:intron | 40.0% |
| !! | TGGGGAACAAAAGCTTGTTT+TGG | - | chr2.3:13050338-13050357 | MS.gene35364:intron | 40.0% |
| !!! | TGTTTTGGGAACCCTAAACA+GGG | - | chr2.3:13050353-13050372 | MS.gene35364:intron | 40.0% |
| !!! | TTGTTTTGGGAACCCTAAAC+AGG | - | chr2.3:13050352-13050371 | MS.gene35364:intron | 40.0% |
| ACAACCTTCACGTGTTTAGC+AGG | + | chr2.3:13051180-13051199 | None:intergenic | 45.0% | |
| AGAACCAAAAGCAGAGGAGA+AGG | - | chr2.3:13051116-13051135 | MS.gene35364:CDS | 45.0% | |
| ATATAGCCTCCCACCCTTAA+GGG | - | chr2.3:13052401-13052420 | MS.gene35364:intron | 45.0% | |
| CAGCTGCTTCAAGGTCATAT+GGG | + | chr2.3:13050147-13050166 | None:intergenic | 45.0% | |
| CCATCCAAACACACCCTTAA+GGG | + | chr2.3:13052417-13052436 | None:intergenic | 45.0% | |
| CGTGAAGGTTGTTGATCCAA+AGG | - | chr2.3:13051188-13051207 | MS.gene35364:intron | 45.0% | |
| GAAGGTTGTTGATCCAAAGG+AGG | - | chr2.3:13051191-13051210 | MS.gene35364:intron | 45.0% | |
| GACTCCTGTGAAGAAGGTAA+TGG | - | chr2.3:13051606-13051625 | MS.gene35364:intron | 45.0% | |
| GCTGCTAGTGTTCATTTCTG+TGG | - | chr2.3:13050444-13050463 | MS.gene35364:intron | 45.0% | |
| GGAGTCTTTCCACCTTTCTT+AGG | + | chr2.3:13052866-13052885 | None:intergenic | 45.0% | |
| GTTTGGATTGAGGGTTTAGG+AGG | + | chr2.3:13052672-13052691 | None:intergenic | 45.0% | |
| TCCATCCAAACACACCCTTA+AGG | + | chr2.3:13052418-13052437 | None:intergenic | 45.0% | |
| TCTTCATCTTCCTCCTCCTT+TGG | + | chr2.3:13051207-13051226 | None:intergenic | 45.0% | |
| TGAGAGTGATGAGGATGATG+AGG | - | chr2.3:13051579-13051598 | MS.gene35364:intron | 45.0% | |
| TGGACTGCAACAACATAGCA+AGG | - | chr2.3:13053057-13053076 | MS.gene35364:intron | 45.0% | |
| TGTGAATAGCAGCTGCTTCA+AGG | + | chr2.3:13050156-13050175 | None:intergenic | 45.0% | |
| TGTGTTTGGATGGAGGGTTT+AGG | - | chr2.3:13052424-13052443 | MS.gene35364:intron | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | + | chr2.3:13052670-13052689 | None:intergenic | 45.0% | |
| TTTAGCAGGTGCAGCATTCT+TGG | + | chr2.3:13051166-13051185 | None:intergenic | 45.0% | |
| TTTCCACCTTTCTTAGGGTG+AGG | + | chr2.3:13052860-13052879 | None:intergenic | 45.0% | |
| TTTGGATGGAGGGTTTAGGA+GGG | - | chr2.3:13052428-13052447 | MS.gene35364:intron | 45.0% | |
| ! | AACAGATCTGTAAGGCACCT+AGG | + | chr2.3:13050744-13050763 | None:intergenic | 45.0% |
| ! | ACCCATACCATTTTGCTCTG+TGG | + | chr2.3:13051006-13051025 | None:intergenic | 45.0% |
| ! | GAAACCTTCTCCTCTGCTTT+TGG | + | chr2.3:13051123-13051142 | None:intergenic | 45.0% |
| ! | GCTTTTGTTCCCCAACTTTG+AGG | + | chr2.3:13050332-13050351 | None:intergenic | 45.0% |
| ! | TAAGGGTGTGTTTGGATGGA+GGG | - | chr2.3:13052418-13052437 | MS.gene35364:intron | 45.0% |
| ! | TGTGCCATTACCTTCTTCAC+AGG | + | chr2.3:13051613-13051632 | None:intergenic | 45.0% |
| ! | TTAAGGGTGTGTTTGGATGG+AGG | - | chr2.3:13052417-13052436 | MS.gene35364:intron | 45.0% |
| !! | GGAGTTTTGGCATCACTGTT+AGG | + | chr2.3:13052887-13052906 | None:intergenic | 45.0% |
| !! | TTAGGTGCTGAGGTTAAGGT+TGG | - | chr2.3:13050103-13050122 | MS.gene35364:intron | 45.0% |
| !!! | TTCTCCTCTGCTTTTGGTTC+TGG | + | chr2.3:13051117-13051136 | None:intergenic | 45.0% |
| !!! | TTTATTTGTTATAATTATTA+TGG | - | chr2.3:13051649-13051668 | MS.gene35364:CDS | 5.0% |
| AAAACTCCCAAGTCTGGAGG+AGG | - | chr2.3:13052899-13052918 | MS.gene35364:intron | 50.0% | |
| AATGCCACTCCTGAGAAGAC+TGG | - | chr2.3:13051786-13051805 | MS.gene35364:CDS | 50.0% | |
| ACGAGTGAGGAAGGTGAAAC+TGG | - | chr2.3:13050854-13050873 | MS.gene35364:intron | 50.0% | |
| ACTCCTCACCCTAAGAAAGG+TGG | - | chr2.3:13052854-13052873 | MS.gene35364:intron | 50.0% | |
| AGACAAACCAAACGAGCCTG+TGG | - | chr2.3:13050299-13050318 | MS.gene35364:intron | 50.0% | |
| AGGTTGACCAGGGAAAGAAG+AGG | - | chr2.3:13051715-13051734 | MS.gene35364:CDS | 50.0% | |
| ATTGAGGGTTTAGGAGGGGA+AGG | + | chr2.3:13052666-13052685 | None:intergenic | 50.0% | |
| CATATAGCCTCCCACCCTTA+AGG | - | chr2.3:13052400-13052419 | MS.gene35364:intron | 50.0% | |
| CCAAACACACCCTTAAGGGT+GGG | + | chr2.3:13052413-13052432 | None:intergenic | 50.0% | |
| GATGCCAAAACTCCCAAGTC+TGG | - | chr2.3:13052893-13052912 | MS.gene35364:intron | 50.0% | |
| GCAACTCCTCACCCTAAGAA+AGG | - | chr2.3:13052851-13052870 | MS.gene35364:intron | 50.0% | |
| GCAGCTGCTTCAAGGTCATA+TGG | + | chr2.3:13050148-13050167 | None:intergenic | 50.0% | |
| GGAAGAGACTCCTGTGAAGA+AGG | - | chr2.3:13051600-13051619 | MS.gene35364:intron | 50.0% | |
| GGTTGTTGATCCAAAGGAGG+AGG | - | chr2.3:13051194-13051213 | MS.gene35364:intron | 50.0% | |
| GTTTGGATGGAGGGTTTAGG+AGG | - | chr2.3:13052427-13052446 | MS.gene35364:intron | 50.0% | |
| TCCAAACACACCCTTAAGGG+TGG | + | chr2.3:13052414-13052433 | None:intergenic | 50.0% | |
| TGCACCTGCTAAACACGTGA+AGG | - | chr2.3:13051173-13051192 | MS.gene35364:CDS | 50.0% | |
| TTGAGGGTTTAGGAGGGGAA+GGG | + | chr2.3:13052665-13052684 | None:intergenic | 50.0% | |
| TTGGATGGAGGGTTTAGGAG+GGG | - | chr2.3:13052429-13052448 | MS.gene35364:intron | 50.0% | |
| TTGGTCTCACCAGTCTTCTC+AGG | + | chr2.3:13051798-13051817 | None:intergenic | 50.0% | |
| ! | CCCTTAAGGGTGTGTTTGGA+TGG | - | chr2.3:13052414-13052433 | MS.gene35364:intron | 50.0% |
| ! | TCCTCCAGACTTGGGAGTTT+TGG | + | chr2.3:13052900-13052919 | None:intergenic | 50.0% |
| !!! | TGTTTTGGCTTGCACGAGTG+AGG | - | chr2.3:13050841-13050860 | MS.gene35364:intron | 50.0% |
| AACACACCCTTAAGGGTGGG+AGG | + | chr2.3:13052410-13052429 | None:intergenic | 55.0% | |
| AGAGAGTCCTCCTCCAGACT+TGG | + | chr2.3:13052909-13052928 | None:intergenic | 55.0% | |
| ATGGAGGGTTTAGGAGGGGA+AGG | - | chr2.3:13052433-13052452 | MS.gene35364:intron | 55.0% | |
| CATTGGGCCTCTTCTTTCCC+TGG | + | chr2.3:13051725-13051744 | None:intergenic | 55.0% | |
| CTCACCAGTCTTCTCAGGAG+TGG | + | chr2.3:13051793-13051812 | None:intergenic | 55.0% | |
| GAGAGTCCTCCTCCAGACTT+GGG | + | chr2.3:13052908-13052927 | None:intergenic | 55.0% | |
| GCCAAAACTCCCAAGTCTGG+AGG | - | chr2.3:13052896-13052915 | MS.gene35364:intron | 55.0% | |
| TGGAGGGTTTAGGAGGGGAA+GGG | - | chr2.3:13052434-13052453 | MS.gene35364:intron | 55.0% | |
| ! | CCCACCCTTAAGGGTGTGTT+TGG | - | chr2.3:13052410-13052429 | MS.gene35364:intron | 55.0% |
| !! | TTGGCTTGCACGAGTGAGGA+AGG | - | chr2.3:13050845-13050864 | MS.gene35364:intron | 55.0% |
| AGGGTTTAGGAGGGGAAGGG+AGG | - | chr2.3:13052437-13052456 | MS.gene35364:intron | 60.0% | |
| AGGGTTTAGGAGGGGAAGGG+AGG | + | chr2.3:13052456-13052437 | None:intergenic | 60.0% | |
| GGGTTTAGGAGGGGAAGGGA+GGG | - | chr2.3:13052438-13052457 | MS.gene35364:intron | 60.0% | |
| GGGTTTAGGAGGGGAAGGGA+GGG | + | chr2.3:13052457-13052438 | None:intergenic | 60.0% | |
| GGTTTAGGAGGGGAAGGGAG+GGG | - | chr2.3:13052439-13052458 | MS.gene35364:intron | 60.0% | |
| GGTTTAGGAGGGGAAGGGAG+GGG | + | chr2.3:13052458-13052439 | None:intergenic | 60.0% | |
| AGGAGGGGAAGGGAGGGGAA+GGG | + | chr2.3:13052655-13052674 | None:intergenic | 65.0% | |
| TAGGAGGGGAAGGGAGGGGA+AGG | + | chr2.3:13052462-13052443 | None:intergenic | 65.0% | |
| TAGGAGGGGAAGGGAGGGGA+GGG | - | chr2.3:13052443-13052462 | MS.gene35364:intron | 65.0% | |
| TTAGGAGGGGAAGGGAGGGG+AGG | - | chr2.3:13052442-13052461 | MS.gene35364:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 13049819 | 13053099 | 13049819 | ID=MS.gene35364 |
| chr2.3 | mRNA | 13049819 | 13053099 | 13049819 | ID=MS.gene35364.t1;Parent=MS.gene35364 |
| chr2.3 | exon | 13053087 | 13053099 | 13053087 | ID=MS.gene35364.t1.exon1;Parent=MS.gene35364.t1 |
| chr2.3 | CDS | 13053087 | 13053099 | 13053087 | ID=cds.MS.gene35364.t1;Parent=MS.gene35364.t1 |
| chr2.3 | exon | 13052735 | 13052811 | 13052735 | ID=MS.gene35364.t1.exon2;Parent=MS.gene35364.t1 |
| chr2.3 | CDS | 13052735 | 13052811 | 13052735 | ID=cds.MS.gene35364.t1;Parent=MS.gene35364.t1 |
| chr2.3 | exon | 13052456 | 13052642 | 13052456 | ID=MS.gene35364.t1.exon3;Parent=MS.gene35364.t1 |
| chr2.3 | CDS | 13052456 | 13052642 | 13052456 | ID=cds.MS.gene35364.t1;Parent=MS.gene35364.t1 |
| chr2.3 | exon | 13051901 | 13051945 | 13051901 | ID=MS.gene35364.t1.exon4;Parent=MS.gene35364.t1 |
| chr2.3 | CDS | 13051901 | 13051945 | 13051901 | ID=cds.MS.gene35364.t1;Parent=MS.gene35364.t1 |
| chr2.3 | exon | 13051637 | 13051809 | 13051637 | ID=MS.gene35364.t1.exon5;Parent=MS.gene35364.t1 |
| chr2.3 | CDS | 13051637 | 13051809 | 13051637 | ID=cds.MS.gene35364.t1;Parent=MS.gene35364.t1 |
| chr2.3 | exon | 13051297 | 13051368 | 13051297 | ID=MS.gene35364.t1.exon6;Parent=MS.gene35364.t1 |
| chr2.3 | CDS | 13051297 | 13051368 | 13051297 | ID=cds.MS.gene35364.t1;Parent=MS.gene35364.t1 |
| chr2.3 | exon | 13051111 | 13051201 | 13051111 | ID=MS.gene35364.t1.exon7;Parent=MS.gene35364.t1 |
| chr2.3 | CDS | 13051111 | 13051201 | 13051111 | ID=cds.MS.gene35364.t1;Parent=MS.gene35364.t1 |
| chr2.3 | exon | 13049973 | 13050090 | 13049973 | ID=MS.gene35364.t1.exon8;Parent=MS.gene35364.t1 |
| chr2.3 | CDS | 13049973 | 13050090 | 13049973 | ID=cds.MS.gene35364.t1;Parent=MS.gene35364.t1 |
| chr2.3 | exon | 13049819 | 13049879 | 13049819 | ID=MS.gene35364.t1.exon9;Parent=MS.gene35364.t1 |
| chr2.3 | CDS | 13049819 | 13049879 | 13049819 | ID=cds.MS.gene35364.t1;Parent=MS.gene35364.t1 |
| Gene Sequence |
| Protein sequence |
