Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057052.t1 | XP_003617173.1 | 96.4 | 223 | 7 | 1 | 1 | 222 | 1 | 223 | 5.00E-81 | 310.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057052.t1 | Q84WM9 | 71.9 | 228 | 58 | 1 | 1 | 222 | 1 | 228 | 4.6e-59 | 229.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057052.t1 | B7FMR1 | 96.4 | 223 | 7 | 1 | 1 | 222 | 1 | 223 | 3.6e-81 | 310.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050252 | MS.gene057052 | 0.817648 | 2.96E-52 | -1.69E-46 |
| MS.gene054937 | MS.gene057052 | 0.829142 | 6.07E-55 | -1.69E-46 |
| MS.gene057052 | MS.gene057092 | 0.804192 | 2.43E-49 | -1.69E-46 |
| MS.gene057052 | MS.gene058560 | 0.801049 | 1.08E-48 | -1.69E-46 |
| MS.gene057052 | MS.gene059726 | 0.802015 | 6.86E-49 | -1.69E-46 |
| MS.gene057052 | MS.gene060574 | 0.845354 | 4.28E-59 | -1.69E-46 |
| MS.gene057052 | MS.gene061145 | 0.808212 | 3.46E-50 | -1.69E-46 |
| MS.gene057052 | MS.gene063817 | 0.827226 | 1.76E-54 | -1.69E-46 |
| MS.gene057052 | MS.gene065297 | 0.805867 | 1.08E-49 | -1.69E-46 |
| MS.gene057052 | MS.gene073078 | 0.861856 | 7.64E-64 | -1.69E-46 |
| MS.gene057052 | MS.gene074594 | 0.811705 | 6.13E-51 | -1.69E-46 |
| MS.gene057052 | MS.gene21636 | 0.857257 | 1.85E-62 | -1.69E-46 |
| MS.gene057052 | MS.gene22465 | 0.830522 | 2.80E-55 | -1.69E-46 |
| MS.gene057052 | MS.gene23437 | 0.858807 | 6.39E-63 | -1.69E-46 |
| MS.gene057052 | MS.gene27000 | 0.810128 | 1.34E-50 | -1.69E-46 |
| MS.gene057052 | MS.gene27879 | 0.80671 | 7.21E-50 | -1.69E-46 |
| MS.gene057052 | MS.gene30933 | 0.805831 | 1.10E-49 | -1.69E-46 |
| MS.gene057052 | MS.gene31991 | 0.802229 | 6.20E-49 | -1.69E-46 |
| MS.gene057052 | MS.gene34283 | 0.846523 | 2.06E-59 | -1.69E-46 |
| MS.gene057052 | MS.gene34284 | 0.845817 | 3.20E-59 | -1.69E-46 |
| MS.gene057052 | MS.gene34285 | 0.836897 | 7.15E-57 | -1.69E-46 |
| MS.gene057052 | MS.gene35364 | 0.800045 | 1.73E-48 | -1.69E-46 |
| MS.gene057052 | MS.gene35379 | 0.80773 | 4.38E-50 | -1.69E-46 |
| MS.gene057052 | MS.gene37293 | 0.802168 | 6.38E-49 | -1.69E-46 |
| MS.gene057052 | MS.gene37379 | 0.806692 | 7.27E-50 | -1.69E-46 |
| MS.gene057052 | MS.gene37588 | 0.993297 | 9.02E-199 | -1.69E-46 |
| MS.gene057052 | MS.gene39764 | 0.99769 | 2.97E-247 | -1.69E-46 |
| MS.gene057052 | MS.gene40834 | 0.848943 | 4.44E-60 | -1.69E-46 |
| MS.gene057052 | MS.gene41901 | 0.828992 | 6.60E-55 | -1.69E-46 |
| MS.gene057052 | MS.gene41902 | 0.809245 | 2.08E-50 | -1.69E-46 |
| MS.gene057052 | MS.gene43070 | 0.827072 | 1.91E-54 | -1.69E-46 |
| MS.gene057052 | MS.gene48048 | 0.870775 | 1.13E-66 | -1.69E-46 |
| MS.gene057052 | MS.gene53465 | 0.832138 | 1.12E-55 | -1.69E-46 |
| MS.gene057052 | MS.gene57391 | 0.834587 | 2.75E-56 | -1.69E-46 |
| MS.gene057052 | MS.gene57462 | 0.814663 | 1.37E-51 | -1.69E-46 |
| MS.gene057052 | MS.gene60861 | 0.803952 | 2.73E-49 | -1.69E-46 |
| MS.gene057052 | MS.gene64754 | 0.850943 | 1.22E-60 | -1.69E-46 |
| MS.gene057052 | MS.gene67151 | 0.839405 | 1.62E-57 | -1.69E-46 |
| MS.gene057052 | MS.gene67234 | 0.804715 | 1.89E-49 | -1.69E-46 |
| MS.gene057052 | MS.gene67681 | 0.838761 | 2.37E-57 | -1.69E-46 |
| MS.gene057052 | MS.gene68049 | 0.861489 | 9.90E-64 | -1.69E-46 |
| MS.gene057052 | MS.gene70215 | 0.832739 | 7.96E-56 | -1.69E-46 |
| MS.gene057052 | MS.gene70805 | 0.825609 | 4.27E-54 | -1.69E-46 |
| MS.gene057052 | MS.gene77306 | 0.810529 | 1.10E-50 | -1.69E-46 |
| MS.gene057052 | MS.gene87309 | 0.823565 | 1.29E-53 | -1.69E-46 |
| MS.gene057052 | MS.gene88892 | 0.845177 | 4.78E-59 | -1.69E-46 |
| MS.gene057052 | MS.gene89608 | 0.849641 | 2.84E-60 | -1.69E-46 |
| MS.gene057052 | MS.gene90723 | 0.80801 | 3.82E-50 | -1.69E-46 |
| MS.gene057052 | MS.gene91826 | 0.826161 | 3.16E-54 | -1.69E-46 |
| MS.gene057052 | MS.gene94182 | 0.807081 | 6.02E-50 | -1.69E-46 |
| MS.gene057052 | MS.gene94561 | 0.819179 | 1.33E-52 | -1.69E-46 |
| MS.gene057052 | MS.gene95803 | 0.814376 | 1.59E-51 | -1.69E-46 |
| MS.gene057052 | MS.gene98113 | 0.834456 | 2.97E-56 | -1.69E-46 |
| MS.gene057052 | MS.gene99406 | 0.852564 | 4.25E-61 | -1.69E-46 |
| MS.gene057052 | MS.gene99709 | 0.812239 | 4.69E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene057052 | MS.gene81545 | PPI |
| MS.gene057052 | MS.gene73243 | PPI |
| MS.gene016914 | MS.gene057052 | PPI |
| MS.gene057052 | MS.gene048096 | PPI |
| MS.gene043773 | MS.gene057052 | PPI |
| MS.gene057052 | MS.gene92572 | PPI |
| MS.gene057052 | MS.gene037669 | PPI |
| MS.gene036405 | MS.gene057052 | PPI |
| MS.gene057052 | MS.gene68663 | PPI |
| MS.gene37588 | MS.gene057052 | PPI |
| MS.gene057052 | MS.gene39764 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057052.t1 | MTR_5g088660 | 97.758 | 223 | 4 | 1 | 1 | 222 | 1 | 223 | 5.55e-156 | 431 |
| MS.gene057052.t1 | MTR_4g019610 | 63.636 | 231 | 75 | 3 | 1 | 222 | 1 | 231 | 5.57e-76 | 229 |
| MS.gene057052.t1 | MTR_4g019610 | 63.636 | 231 | 75 | 3 | 1 | 222 | 1 | 231 | 1.24e-75 | 229 |
| MS.gene057052.t1 | MTR_2g461200 | 63.203 | 231 | 76 | 4 | 1 | 222 | 1 | 231 | 5.51e-74 | 224 |
| MS.gene057052.t1 | MTR_2g461200 | 63.203 | 231 | 76 | 4 | 1 | 222 | 1 | 231 | 7.73e-74 | 224 |
| MS.gene057052.t1 | MTR_2g461200 | 55.556 | 180 | 71 | 4 | 1 | 171 | 1 | 180 | 7.73e-37 | 127 |
| MS.gene057052.t1 | MTR_5g088685 | 90.698 | 43 | 4 | 0 | 129 | 171 | 7 | 49 | 6.43e-21 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057052.t1 | AT5G12110 | 69.737 | 228 | 63 | 3 | 1 | 222 | 1 | 228 | 8.98e-100 | 289 |
| MS.gene057052.t1 | AT5G19510 | 74.107 | 224 | 56 | 2 | 1 | 222 | 1 | 224 | 1.55e-90 | 266 |
| MS.gene057052.t1 | AT2G18110 | 58.079 | 229 | 84 | 4 | 5 | 222 | 4 | 231 | 1.72e-72 | 220 |
| MS.gene057052.t1 | AT1G30230 | 59.211 | 228 | 83 | 4 | 5 | 222 | 4 | 231 | 3.69e-69 | 211 |
| MS.gene057052.t1 | AT1G30230 | 59.211 | 228 | 83 | 4 | 5 | 222 | 4 | 231 | 8.57e-69 | 212 |
Find 51 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGGACATACTCGTTAAT+TGG | 0.274565 | 5.4:-69768921 | None:intergenic |
| TTAGCAGGTGCTCCTGCAGC+TGG | 0.312184 | 5.4:-69766882 | None:intergenic |
| TTACTCTCTTTCTTCTTTGC+GGG | 0.314961 | 5.4:-69768381 | None:intergenic |
| GATGATGATCTTGACCTCTT+TGG | 0.382817 | 5.4:+69768303 | MS.gene057052:CDS |
| ACATGCTCCCCAGGTTAAAC+CGG | 0.384492 | 5.4:-69768678 | None:intergenic |
| TCCCTCAATGATTTCCTCTC+TGG | 0.387083 | 5.4:+69766210 | MS.gene057052:CDS |
| TTGAAATTCCCGGTTTAACC+TGG | 0.398982 | 5.4:+69768669 | MS.gene057052:CDS |
| CTTACTCTCTTTCTTCTTTG+CGG | 0.404225 | 5.4:-69768382 | None:intergenic |
| GTTCGCAGCGTTGAAATTCC+CGG | 0.412225 | 5.4:+69768659 | MS.gene057052:CDS |
| CAAAGTGTATGGATATGTTT+CGG | 0.431607 | 5.4:+69766613 | MS.gene057052:CDS |
| AAGGATGATATCAAAGTGTA+TGG | 0.446962 | 5.4:+69766602 | MS.gene057052:CDS |
| TAAGAAGGCAGCAGAGGAAA+GGG | 0.453012 | 5.4:+69768344 | MS.gene057052:CDS |
| AGATACAAGATCGTCAATAA+TGG | 0.472820 | 5.4:-69768862 | None:intergenic |
| AGTGGAAGTGCTCCAGCTGC+AGG | 0.481359 | 5.4:+69766870 | MS.gene057052:CDS |
| AAGCTGGTTGCTGTTGGATA+CGG | 0.492710 | 5.4:+69768813 | MS.gene057052:CDS |
| TCCAGAGAGGAAATCATTGA+GGG | 0.494384 | 5.4:-69766211 | None:intergenic |
| TGAGACAGACATGAAGAAGC+TGG | 0.511507 | 5.4:+69768628 | MS.gene057052:CDS |
| TTGCATTGTTACAGCCAAGC+TGG | 0.512626 | 5.4:+69768797 | MS.gene057052:intron |
| TGAAACAGAGGAGGATAAGA+AGG | 0.514826 | 5.4:+69768329 | MS.gene057052:CDS |
| ATAAGAAGGCAGCAGAGGAA+AGG | 0.514986 | 5.4:+69768343 | MS.gene057052:CDS |
| TCATCATCATCTTCAGCAGC+AGG | 0.517729 | 5.4:-69768288 | None:intergenic |
| TTTCAACATACATGCTCCCC+AGG | 0.520277 | 5.4:-69768687 | None:intergenic |
| ATGCGACAATGTCACAGCTC+TGG | 0.527719 | 5.4:-69768938 | None:intergenic |
| ATGTCTGTCTCATCATCCCA+TGG | 0.532053 | 5.4:-69768617 | None:intergenic |
| TTCTGCTTGATGTTAAGCCA+TGG | 0.537433 | 5.4:+69768600 | MS.gene057052:CDS |
| TCTCTTCACATCTTGCTGCA+AGG | 0.539260 | 5.4:+69766684 | MS.gene057052:CDS |
| TGAAATTCCCGGTTTAACCT+GGG | 0.541002 | 5.4:+69768670 | MS.gene057052:CDS |
| TGGCTTAACATCAAGCAGAA+TGG | 0.546092 | 5.4:-69768597 | None:intergenic |
| AGACATGAAGAAGCTGGAAG+AGG | 0.547223 | 5.4:+69768634 | MS.gene057052:CDS |
| TTCCAGAGAGGAAATCATTG+AGG | 0.548339 | 5.4:-69766212 | None:intergenic |
| GAGATACATACAGCTTTAGC+AGG | 0.553332 | 5.4:-69766897 | None:intergenic |
| CTGTGAGTCTTTCTTCAATG+AGG | 0.560347 | 5.4:-69768893 | None:intergenic |
| ATCGTACCAACCAGCAACAT+TGG | 0.561284 | 5.4:-69766657 | None:intergenic |
| CTCAGATCTTCACACAGAAG+AGG | 0.570425 | 5.4:+69766179 | MS.gene057052:CDS |
| ACATTGGCAAAAGCATCACT+TGG | 0.572710 | 5.4:-69766641 | None:intergenic |
| TATTGACGATCTTGTATCTG+TGG | 0.575194 | 5.4:+69768866 | MS.gene057052:CDS |
| GGAGGATAAGAAGGCAGCAG+AGG | 0.581848 | 5.4:+69768338 | MS.gene057052:CDS |
| TCAGATCTTCACACAGAAGA+GGG | 0.583876 | 5.4:+69766180 | MS.gene057052:CDS |
| GCTCAAGGTGTGAAATTCAG+TGG | 0.585505 | 5.4:+69766852 | MS.gene057052:CDS |
| AGTTTCCCTGGAAAAGCTCA+AGG | 0.588553 | 5.4:+69766837 | MS.gene057052:intron |
| TCTGCTTGATGTTAAGCCAT+GGG | 0.593895 | 5.4:+69768601 | MS.gene057052:CDS |
| CATGCTCCCCAGGTTAAACC+GGG | 0.597168 | 5.4:-69768677 | None:intergenic |
| ACAGCCAAGCTGGTTGCTGT+TGG | 0.600555 | 5.4:+69768807 | MS.gene057052:intron |
| TTCTGTGTGAAGATCTGAGA+AGG | 0.604138 | 5.4:-69766175 | None:intergenic |
| GAAATTCCCGGTTTAACCTG+GGG | 0.605534 | 5.4:+69768671 | MS.gene057052:CDS |
| ATTTAGGGATCAATTGACAA+AGG | 0.610680 | 5.4:+69766583 | MS.gene057052:intron |
| CCTCTGTTTCATCACCAAAG+AGG | 0.617705 | 5.4:-69768317 | None:intergenic |
| GAAGGCAGCAGAGGAAAGGG+AGG | 0.617890 | 5.4:+69768347 | MS.gene057052:CDS |
| GTATCCAACAGCAACCAGCT+TGG | 0.624167 | 5.4:-69768811 | None:intergenic |
| CCTCTTTGGTGATGAAACAG+AGG | 0.645851 | 5.4:+69768317 | MS.gene057052:CDS |
| CTTTGGTGATGAAACAGAGG+AGG | 0.675786 | 5.4:+69768320 | MS.gene057052:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAAGATCAATAATTA+AGG | - | chr5.4:69766736-69766755 | None:intergenic | 10.0% |
| !! | AATTTCAATAATAAAATTGT+TGG | - | chr5.4:69767769-69767788 | None:intergenic | 10.0% |
| !! | TTTATATTGAAATATGAATT+TGG | + | chr5.4:69766748-69766767 | MS.gene057052:intron | 10.0% |
| !! | CTGAAAGATTATTATTAATT+AGG | + | chr5.4:69767315-69767334 | MS.gene057052:intron | 15.0% |
| !!! | TCTATTTTATTGTTTTGAAT+GGG | + | chr5.4:69766519-69766538 | MS.gene057052:intron | 15.0% |
| !!! | TTCTATTTTATTGTTTTGAA+TGG | + | chr5.4:69766518-69766537 | MS.gene057052:intron | 15.0% |
| !! | AAAAATTTATAACGACTAGA+AGG | - | chr5.4:69768412-69768431 | None:intergenic | 20.0% |
| !! | AAAATTACAAAATGTCTTCT+AGG | - | chr5.4:69767604-69767623 | None:intergenic | 20.0% |
| !! | AACACGAAAAATTAAAATTG+AGG | - | chr5.4:69766923-69766942 | None:intergenic | 20.0% |
| !! | AATCATTGCATGTTTATTAT+AGG | + | chr5.4:69767889-69767908 | MS.gene057052:intron | 20.0% |
| !! | ACACGAAAAATTAAAATTGA+GGG | - | chr5.4:69766922-69766941 | None:intergenic | 20.0% |
| !! | AGTATTATGATTATACAACT+AGG | - | chr5.4:69767982-69768001 | None:intergenic | 20.0% |
| !! | ATTCGAATCAATAAAATAGA+AGG | - | chr5.4:69766370-69766389 | None:intergenic | 20.0% |
| !! | CTGGAAAAAAATATATTTCT+GGG | + | chr5.4:69766229-69766248 | MS.gene057052:CDS | 20.0% |
| !! | GTTATTGTCAATTGTAAATA+TGG | + | chr5.4:69767412-69767431 | MS.gene057052:intron | 20.0% |
| !! | TAAAAAAAGTAGAAATTGAG+AGG | - | chr5.4:69766267-69766286 | None:intergenic | 20.0% |
| !! | TCTGGAAAAAAATATATTTC+TGG | + | chr5.4:69766228-69766247 | MS.gene057052:CDS | 20.0% |
| !!! | AAATATATTTTTTTCCAGAG+AGG | - | chr5.4:69766227-69766246 | None:intergenic | 20.0% |
| !!! | ATTTGGGTTATTGAAATTTA+GGG | + | chr5.4:69766568-69766587 | MS.gene057052:intron | 20.0% |
| !!! | CATCTAACATAATTTGAAAT+CGG | + | chr5.4:69767098-69767117 | MS.gene057052:intron | 20.0% |
| !!! | CTATTTTATTGTTTTGAATG+GGG | + | chr5.4:69766520-69766539 | MS.gene057052:intron | 20.0% |
| !!! | GAAATAAAAATAGAGTACTT+TGG | - | chr5.4:69767716-69767735 | None:intergenic | 20.0% |
| !!! | TCATTAAGTGATATTTTTAC+AGG | + | chr5.4:69768563-69768582 | MS.gene057052:intron | 20.0% |
| !!! | TTTTATTGTTTCTGAGATTT+GGG | + | chr5.4:69766312-69766331 | MS.gene057052:intron | 20.0% |
| !!! | TTTTTACTGTTTTGAGATTT+GGG | + | chr5.4:69766410-69766429 | MS.gene057052:intron | 20.0% |
| !!! | TTTTTATTGTTTCTGAGATT+TGG | + | chr5.4:69766311-69766330 | MS.gene057052:intron | 20.0% |
| !!! | TTTTTTACTGTTTTGAGATT+TGG | + | chr5.4:69766409-69766428 | MS.gene057052:intron | 20.0% |
| ! | AGAATTAATCTGGTAATTAG+TGG | + | chr5.4:69767559-69767578 | MS.gene057052:intron | 25.0% |
| ! | ATAAATAATCCACACGAAAA+AGG | + | chr5.4:69767645-69767664 | MS.gene057052:intron | 25.0% |
| ! | ATCATTGGAATTTATTTGTC+AGG | + | chr5.4:69768260-69768279 | MS.gene057052:intron | 25.0% |
| ! | CATGTTTATTATAGGCAATT+AGG | + | chr5.4:69767897-69767916 | MS.gene057052:intron | 25.0% |
| ! | CTACTAACTAATTTGATCAT+TGG | + | chr5.4:69768245-69768264 | MS.gene057052:intron | 25.0% |
| !! | CTTTCTGAAAATAAATGACT+AGG | - | chr5.4:69767232-69767251 | None:intergenic | 25.0% |
| !! | GATTTGGGTTATTGAAATTT+AGG | + | chr5.4:69766567-69766586 | MS.gene057052:intron | 25.0% |
| !! | GGTTTTACAAATTCTATGTT+GGG | + | chr5.4:69766333-69766352 | MS.gene057052:intron | 25.0% |
| !! | TATTGGTCTAAGAATTAATC+TGG | + | chr5.4:69767549-69767568 | MS.gene057052:intron | 25.0% |
| !! | TTGATTCGAATTGAAAAGAT+TGG | + | chr5.4:69766379-69766398 | MS.gene057052:intron | 25.0% |
| !! | TTTTGACATGACATACTATA+AGG | + | chr5.4:69768011-69768030 | MS.gene057052:intron | 25.0% |
| !!! | AAGCATATTTTTGAGAAAAG+TGG | + | chr5.4:69768451-69768470 | MS.gene057052:intron | 25.0% |
| !!! | GAGTCTCTGATTTTATTTAT+TGG | + | chr5.4:69767532-69767551 | MS.gene057052:intron | 25.0% |
| !!! | GGTTTTTTAGAGTAGTATTA+TGG | + | chr5.4:69767816-69767835 | MS.gene057052:intron | 25.0% |
| !!! | TTAAGTGATATTTTTACAGG+TGG | + | chr5.4:69768566-69768585 | MS.gene057052:intron | 25.0% |
| !!! | TTTTACTGTTTCTGAGATTT+GGG | + | chr5.4:69766461-69766480 | MS.gene057052:intron | 25.0% |
| !!! | TTTTTACTGTTTCTGAGATT+TGG | + | chr5.4:69766460-69766479 | MS.gene057052:intron | 25.0% |
| AAGGATGATATCAAAGTGTA+TGG | + | chr5.4:69766602-69766621 | MS.gene057052:CDS | 30.0% | |
| ACTTAAGATGAAAAGCTTAC+AGG | - | chr5.4:69767183-69767202 | None:intergenic | 30.0% | |
| AGAATACAAAACACTAGAGT+TGG | - | chr5.4:69767496-69767515 | None:intergenic | 30.0% | |
| AGATACAAGATCGTCAATAA+TGG | - | chr5.4:69768865-69768884 | None:intergenic | 30.0% | |
| ATTTAGGGATCAATTGACAA+AGG | + | chr5.4:69766583-69766602 | MS.gene057052:intron | 30.0% | |
| CAAAGTGTATGGATATGTTT+CGG | + | chr5.4:69766613-69766632 | MS.gene057052:CDS | 30.0% | |
| GAAAAGCTTACAGGTTTAAA+GGG | - | chr5.4:69767174-69767193 | None:intergenic | 30.0% | |
| GCTAAGTTAGTAACTATGAA+AGG | + | chr5.4:69768101-69768120 | MS.gene057052:intron | 30.0% | |
| GTATTTCTTAGAGTAACACT+GGG | + | chr5.4:69767003-69767022 | MS.gene057052:intron | 30.0% | |
| TGAAAAGCTTACAGGTTTAA+AGG | - | chr5.4:69767175-69767194 | None:intergenic | 30.0% | |
| TGTATTTCTTAGAGTAACAC+TGG | + | chr5.4:69767002-69767021 | MS.gene057052:intron | 30.0% | |
| ! | AGTAGAAATTGAGAGGATTT+TGG | - | chr5.4:69766260-69766279 | None:intergenic | 30.0% |
| ! | GGGTTTTACAAATTCTATGT+TGG | + | chr5.4:69766332-69766351 | MS.gene057052:intron | 30.0% |
| ! | GTAGAAATTGAGAGGATTTT+GGG | - | chr5.4:69766259-69766278 | None:intergenic | 30.0% |
| ! | TAGAAATTGAGAGGATTTTG+GGG | - | chr5.4:69766258-69766277 | None:intergenic | 30.0% |
| !! | CATTTTTCAGCAATATACTG+TGG | + | chr5.4:69767028-69767047 | MS.gene057052:intron | 30.0% |
| !! | TTGTTTTTCACTTTTGAGCA+TGG | - | chr5.4:69767461-69767480 | None:intergenic | 30.0% |
| !!! | TTTTGTATGATTAGTTTCCC+TGG | + | chr5.4:69766825-69766844 | MS.gene057052:intron | 30.0% |
| AACCATCCATGTTGCTATAT+TGG | - | chr5.4:69767800-69767819 | None:intergenic | 35.0% | |
| ACCTAAACTTCACAACAACT+TGG | - | chr5.4:69768188-69768207 | None:intergenic | 35.0% | |
| ACTTGGTAAACATCTCTATC+AGG | - | chr5.4:69768068-69768087 | None:intergenic | 35.0% | |
| AGAAAAGTGGTCATTGAGTT+TGG | + | chr5.4:69768464-69768483 | MS.gene057052:intron | 35.0% | |
| AGTTGTATTGAAGTCACTGA+AGG | + | chr5.4:69768220-69768239 | MS.gene057052:intron | 35.0% | |
| CCTAAACTTCACAACAACTT+GGG | - | chr5.4:69768187-69768206 | None:intergenic | 35.0% | |
| CTTACTCTCTTTCTTCTTTG+CGG | - | chr5.4:69768385-69768404 | None:intergenic | 35.0% | |
| GACATGACATACTATAAGGA+TGG | + | chr5.4:69768015-69768034 | MS.gene057052:intron | 35.0% | |
| GCAATGATTAAAAACATGCG+TGG | - | chr5.4:69767878-69767897 | None:intergenic | 35.0% | |
| TAGCTAACAACTATGTCACT+TGG | - | chr5.4:69768085-69768104 | None:intergenic | 35.0% | |
| TATTGACGATCTTGTATCTG+TGG | + | chr5.4:69768866-69768885 | MS.gene057052:CDS | 35.0% | |
| TTACTCTCTTTCTTCTTTGC+GGG | - | chr5.4:69768384-69768403 | None:intergenic | 35.0% | |
| TTATGTCACGTAGAGTTGTA+TGG | + | chr5.4:69766966-69766985 | MS.gene057052:intron | 35.0% | |
| TTTCAGCCAATATAGCAACA+TGG | + | chr5.4:69767791-69767810 | MS.gene057052:intron | 35.0% | |
| !! | GGGTTTTTCAAATTCTATGC+TGG | + | chr5.4:69766430-69766449 | MS.gene057052:intron | 35.0% |
| AGCCAATATAGCAACATGGA+TGG | + | chr5.4:69767795-69767814 | MS.gene057052:intron | 40.0% | |
| CAATTCCTACGTGACTGATT+TGG | + | chr5.4:69768770-69768789 | MS.gene057052:intron | 40.0% | |
| CCCAAGTTGTTGTGAAGTTT+AGG | + | chr5.4:69768184-69768203 | MS.gene057052:intron | 40.0% | |
| CTATCAGGTTCAACTAACAC+AGG | - | chr5.4:69768053-69768072 | None:intergenic | 40.0% | |
| CTCTGGACATACTCGTTAAT+TGG | - | chr5.4:69768924-69768943 | None:intergenic | 40.0% | |
| CTGTGAGTCTTTCTTCAATG+AGG | - | chr5.4:69768896-69768915 | None:intergenic | 40.0% | |
| GATGATGATCTTGACCTCTT+TGG | + | chr5.4:69768303-69768322 | MS.gene057052:CDS | 40.0% | |
| TCAGATCTTCACACAGAAGA+GGG | + | chr5.4:69766180-69766199 | MS.gene057052:CDS | 40.0% | |
| TCCAGAGAGGAAATCATTGA+GGG | - | chr5.4:69766214-69766233 | None:intergenic | 40.0% | |
| TCTGCTTGATGTTAAGCCAT+GGG | + | chr5.4:69768601-69768620 | MS.gene057052:CDS | 40.0% | |
| TGAAACAGAGGAGGATAAGA+AGG | + | chr5.4:69768329-69768348 | MS.gene057052:CDS | 40.0% | |
| TGAAATTCCCGGTTTAACCT+GGG | + | chr5.4:69768670-69768689 | MS.gene057052:CDS | 40.0% | |
| TGCGTGGATCTCATTAAGAA+AGG | - | chr5.4:69767862-69767881 | None:intergenic | 40.0% | |
| TGGCTTAACATCAAGCAGAA+TGG | - | chr5.4:69768600-69768619 | None:intergenic | 40.0% | |
| TTCCAGAGAGGAAATCATTG+AGG | - | chr5.4:69766215-69766234 | None:intergenic | 40.0% | |
| TTCTGCTTGATGTTAAGCCA+TGG | + | chr5.4:69768600-69768619 | MS.gene057052:CDS | 40.0% | |
| TTCTGTGTGAAGATCTGAGA+AGG | - | chr5.4:69766178-69766197 | None:intergenic | 40.0% | |
| TTGAAATTCCCGGTTTAACC+TGG | + | chr5.4:69768669-69768688 | MS.gene057052:CDS | 40.0% | |
| ! | GAGATACATACAGCTTTAGC+AGG | - | chr5.4:69766900-69766919 | None:intergenic | 40.0% |
| !! | AAGTACTGTCCTTTTTCGTG+TGG | - | chr5.4:69767657-69767676 | None:intergenic | 40.0% |
| !! | ACATTGGCAAAAGCATCACT+TGG | - | chr5.4:69766644-69766663 | None:intergenic | 40.0% |
| ACAAGCCAAATCAGTCACGT+AGG | - | chr5.4:69768778-69768797 | None:intergenic | 45.0% | |
| AGAAAGGAGCTCTACAGTAC+TGG | - | chr5.4:69767846-69767865 | None:intergenic | 45.0% | |
| AGACATGAAGAAGCTGGAAG+AGG | + | chr5.4:69768634-69768653 | MS.gene057052:CDS | 45.0% | |
| AGTTTCCCTGGAAAAGCTCA+AGG | + | chr5.4:69766837-69766856 | MS.gene057052:intron | 45.0% | |
| ATAAGAAGGCAGCAGAGGAA+AGG | + | chr5.4:69768343-69768362 | MS.gene057052:CDS | 45.0% | |
| ATCGTACCAACCAGCAACAT+TGG | - | chr5.4:69766660-69766679 | None:intergenic | 45.0% | |
| ATGTCTGTCTCATCATCCCA+TGG | - | chr5.4:69768620-69768639 | None:intergenic | 45.0% | |
| CCTCTGTTTCATCACCAAAG+AGG | - | chr5.4:69768320-69768339 | None:intergenic | 45.0% | |
| CTCAGATCTTCACACAGAAG+AGG | + | chr5.4:69766179-69766198 | MS.gene057052:CDS | 45.0% | |
| GAAATTCCCGGTTTAACCTG+GGG | + | chr5.4:69768671-69768690 | MS.gene057052:CDS | 45.0% | |
| GCTCAAGGTGTGAAATTCAG+TGG | + | chr5.4:69766852-69766871 | MS.gene057052:CDS | 45.0% | |
| TAAGAAGGCAGCAGAGGAAA+GGG | + | chr5.4:69768344-69768363 | MS.gene057052:CDS | 45.0% | |
| TCATCATCATCTTCAGCAGC+AGG | - | chr5.4:69768291-69768310 | None:intergenic | 45.0% | |
| TCCCTCAATGATTTCCTCTC+TGG | + | chr5.4:69766210-69766229 | MS.gene057052:CDS | 45.0% | |
| TCTCTTCACATCTTGCTGCA+AGG | + | chr5.4:69766684-69766703 | MS.gene057052:CDS | 45.0% | |
| TGAGACAGACATGAAGAAGC+TGG | + | chr5.4:69768628-69768647 | MS.gene057052:CDS | 45.0% | |
| TTGCATTGTTACAGCCAAGC+TGG | + | chr5.4:69768797-69768816 | MS.gene057052:intron | 45.0% | |
| TTTCAACATACATGCTCCCC+AGG | - | chr5.4:69768690-69768709 | None:intergenic | 45.0% | |
| ! | AAGCTGGTTGCTGTTGGATA+CGG | + | chr5.4:69768813-69768832 | MS.gene057052:CDS | 45.0% |
| ! | CTTTTGCCAATGTTGCTGGT+TGG | + | chr5.4:69766651-69766670 | MS.gene057052:CDS | 45.0% |
| ! | GATGCTTTTGCCAATGTTGC+TGG | + | chr5.4:69766647-69766666 | MS.gene057052:CDS | 45.0% |
| ! | TCACACCTTGAGCTTTTCCA+GGG | - | chr5.4:69766845-69766864 | None:intergenic | 45.0% |
| ! | TTCACACCTTGAGCTTTTCC+AGG | - | chr5.4:69766846-69766865 | None:intergenic | 45.0% |
| !! | CCTCTTTGGTGATGAAACAG+AGG | + | chr5.4:69768317-69768336 | MS.gene057052:CDS | 45.0% |
| !! | CTTTGGTGATGAAACAGAGG+AGG | + | chr5.4:69768320-69768339 | MS.gene057052:CDS | 45.0% |
| !!! | TTGATTTTTTTTTTTATAAA+AGG | - | chr5.4:69768753-69768772 | None:intergenic | 5.0% |
| ACATGCTCCCCAGGTTAAAC+CGG | - | chr5.4:69768681-69768700 | None:intergenic | 50.0% | |
| ATGCGACAATGTCACAGCTC+TGG | - | chr5.4:69768941-69768960 | None:intergenic | 50.0% | |
| GTATCCAACAGCAACCAGCT+TGG | - | chr5.4:69768814-69768833 | None:intergenic | 50.0% | |
| ! | GTTCGCAGCGTTGAAATTCC+CGG | + | chr5.4:69768659-69768678 | MS.gene057052:CDS | 50.0% |
| ACAGCCAAGCTGGTTGCTGT+TGG | + | chr5.4:69768807-69768826 | MS.gene057052:intron | 55.0% | |
| CATGCTCCCCAGGTTAAACC+GGG | - | chr5.4:69768680-69768699 | None:intergenic | 55.0% | |
| GGAGGATAAGAAGGCAGCAG+AGG | + | chr5.4:69768338-69768357 | MS.gene057052:CDS | 55.0% | |
| GAAGGCAGCAGAGGAAAGGG+AGG | + | chr5.4:69768347-69768366 | MS.gene057052:CDS | 60.0% | |
| TTAGCAGGTGCTCCTGCAGC+TGG | - | chr5.4:69766885-69766904 | None:intergenic | 60.0% | |
| !! | AGTGGAAGTGCTCCAGCTGC+AGG | + | chr5.4:69766870-69766889 | MS.gene057052:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 69766165 | 69768974 | 69766165 | ID=MS.gene057052 |
| chr5.4 | mRNA | 69766165 | 69768974 | 69766165 | ID=MS.gene057052.t1;Parent=MS.gene057052 |
| chr5.4 | exon | 69766165 | 69766250 | 69766165 | ID=MS.gene057052.t1.exon1;Parent=MS.gene057052.t1 |
| chr5.4 | CDS | 69766165 | 69766250 | 69766165 | ID=cds.MS.gene057052.t1;Parent=MS.gene057052.t1 |
| chr5.4 | exon | 69766589 | 69766705 | 69766589 | ID=MS.gene057052.t1.exon2;Parent=MS.gene057052.t1 |
| chr5.4 | CDS | 69766589 | 69766705 | 69766589 | ID=cds.MS.gene057052.t1;Parent=MS.gene057052.t1 |
| chr5.4 | exon | 69766839 | 69766908 | 69766839 | ID=MS.gene057052.t1.exon3;Parent=MS.gene057052.t1 |
| chr5.4 | CDS | 69766839 | 69766908 | 69766839 | ID=cds.MS.gene057052.t1;Parent=MS.gene057052.t1 |
| chr5.4 | exon | 69768282 | 69768399 | 69768282 | ID=MS.gene057052.t1.exon4;Parent=MS.gene057052.t1 |
| chr5.4 | CDS | 69768282 | 69768399 | 69768282 | ID=cds.MS.gene057052.t1;Parent=MS.gene057052.t1 |
| chr5.4 | exon | 69768585 | 69768698 | 69768585 | ID=MS.gene057052.t1.exon5;Parent=MS.gene057052.t1 |
| chr5.4 | CDS | 69768585 | 69768698 | 69768585 | ID=cds.MS.gene057052.t1;Parent=MS.gene057052.t1 |
| chr5.4 | exon | 69768811 | 69768974 | 69768811 | ID=MS.gene057052.t1.exon6;Parent=MS.gene057052.t1 |
| chr5.4 | CDS | 69768811 | 69768974 | 69768811 | ID=cds.MS.gene057052.t1;Parent=MS.gene057052.t1 |
| Gene Sequence |
| Protein sequence |
