Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36282.t1 | XP_003597790.2 | 93.7 | 364 | 22 | 1 | 1 | 363 | 1 | 364 | 9.00E-205 | 722.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36282.t1 | Q9M8L2 | 47.6 | 370 | 171 | 6 | 1 | 363 | 1 | 354 | 4.8e-98 | 359.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36282.t1 | G7II60 | 93.7 | 364 | 22 | 1 | 1 | 363 | 1 | 364 | 6.5e-205 | 722.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050467 | MS.gene36282 | 0.803747 | 3.01E-49 | -1.69E-46 |
MS.gene050532 | MS.gene36282 | 0.805625 | 1.22E-49 | -1.69E-46 |
MS.gene05884 | MS.gene36282 | 0.803557 | 3.29E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36282.t1 | MTR_2g102370 | 93.681 | 364 | 22 | 1 | 1 | 363 | 1 | 364 | 0.0 | 705 |
MS.gene36282.t1 | MTR_4g011900 | 59.504 | 363 | 142 | 1 | 1 | 363 | 3 | 360 | 2.94e-161 | 456 |
MS.gene36282.t1 | MTR_2g102355 | 88.525 | 122 | 14 | 0 | 175 | 296 | 46 | 167 | 4.56e-75 | 230 |
MS.gene36282.t1 | MTR_8g085650 | 36.240 | 367 | 200 | 8 | 1 | 363 | 5 | 341 | 6.36e-62 | 202 |
MS.gene36282.t1 | MTR_7g095220 | 27.341 | 267 | 156 | 8 | 2 | 260 | 3 | 239 | 3.37e-20 | 90.9 |
MS.gene36282.t1 | MTR_8g085600 | 26.821 | 302 | 179 | 11 | 3 | 296 | 77 | 344 | 3.16e-15 | 77.0 |
MS.gene36282.t1 | MTR_8g080370 | 27.074 | 229 | 142 | 7 | 3 | 229 | 51 | 256 | 2.09e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36282.t1 | AT1G80440 | 47.568 | 370 | 171 | 6 | 1 | 363 | 1 | 354 | 1.23e-119 | 350 |
MS.gene36282.t1 | AT1G15670 | 48.087 | 366 | 180 | 4 | 1 | 363 | 1 | 359 | 1.41e-119 | 350 |
MS.gene36282.t1 | AT2G44130 | 33.677 | 291 | 155 | 7 | 2 | 267 | 18 | 295 | 1.30e-41 | 150 |
MS.gene36282.t1 | AT3G59940 | 28.928 | 401 | 228 | 11 | 2 | 352 | 14 | 407 | 7.34e-40 | 146 |
MS.gene36282.t1 | AT3G63220 | 25.378 | 331 | 196 | 11 | 3 | 322 | 4 | 294 | 5.53e-19 | 87.4 |
MS.gene36282.t1 | AT3G63220 | 25.378 | 331 | 196 | 11 | 3 | 322 | 11 | 301 | 5.88e-19 | 87.4 |
MS.gene36282.t1 | AT3G63220 | 25.378 | 331 | 196 | 11 | 3 | 322 | 11 | 301 | 5.88e-19 | 87.4 |
MS.gene36282.t1 | AT1G67480 | 29.237 | 236 | 128 | 8 | 3 | 229 | 39 | 244 | 2.45e-13 | 70.9 |
MS.gene36282.t1 | AT1G67480 | 29.237 | 236 | 128 | 8 | 3 | 229 | 39 | 244 | 2.45e-13 | 70.9 |
MS.gene36282.t1 | AT1G67480 | 29.237 | 236 | 128 | 8 | 3 | 229 | 39 | 244 | 2.45e-13 | 70.9 |
Find 0 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTTATAAACTAAATGTAT+TGG | + | 15227:54003-54022 | MS.gene36282:CDS | 10.0% |
!!! | AATACATTTAGTTTATAAAT+TGG | - | 15227:54004-54023 | None:intergenic | 10.0% |
!!! | ATACATTTAGTTTATAAATT+GGG | - | 15227:54003-54022 | None:intergenic | 10.0% |
!!! | ATAATTTTTTATCTGCTACG+TGG | + | 15227:54182-54201 | MS.gene36282:CDS | 25.0% |
!!! | GCTTTTTTCTGAATCAAATT+TGG | - | 15227:53951-53970 | None:intergenic | 25.0% |
AATGTATTGGAAACTGAAAC+AGG | + | 15227:54016-54035 | MS.gene36282:CDS | 30.0% | |
AGAAGAATGTACATGTGTAA+GGG | + | 15227:54592-54611 | MS.gene36282:CDS | 30.0% | |
GATTCAGAAAAAAGCAAAAC+CGG | + | 15227:53956-53975 | MS.gene36282:CDS | 30.0% | |
TTCATGGAAAGCTTCAAATT+CGG | + | 15227:54150-54169 | MS.gene36282:CDS | 30.0% | |
! | AAAAAGCAAAACCGGTTTAT+TGG | + | 15227:53964-53983 | MS.gene36282:CDS | 30.0% |
! | CAGATGCATTGTTATTGATT+GGG | + | 15227:54707-54726 | MS.gene36282:CDS | 30.0% |
AGTTTCATACCAGGAATTTC+CGG | + | 15227:53817-53836 | MS.gene36282:CDS | 35.0% | |
GAAAACCCAGAAAATTTCAC+CGG | + | 15227:54799-54818 | MS.gene36282:CDS | 35.0% | |
GAGAAGAATGTACATGTGTA+AGG | + | 15227:54591-54610 | MS.gene36282:CDS | 35.0% | |
TCATGAAAGAATGGTCTATG+TGG | + | 15227:54261-54280 | MS.gene36282:CDS | 35.0% | |
TGCATCAGATCATGAAAGAA+TGG | + | 15227:54252-54271 | MS.gene36282:CDS | 35.0% | |
TGGAAACTGAAACAGGTATT+TGG | + | 15227:54023-54042 | MS.gene36282:CDS | 35.0% | |
TTGAAGCTTTCCATGAATCA+GGG | - | 15227:54147-54166 | None:intergenic | 35.0% | |
TTGTGTAGATGGTTGTGAAT+TGG | + | 15227:54567-54586 | MS.gene36282:CDS | 35.0% | |
! | ATAAGGAATGTTGCTTGTGT+GGG | + | 15227:54676-54695 | MS.gene36282:CDS | 35.0% |
! | GCAGATGCATTGTTATTGAT+TGG | + | 15227:54706-54725 | MS.gene36282:CDS | 35.0% |
! | TGTAAGATAGTGTTTTGTGC+CGG | + | 15227:54391-54410 | MS.gene36282:CDS | 35.0% |
! | TGTTATTGATTGGGTCTAGT+GGG | + | 15227:54716-54735 | MS.gene36282:CDS | 35.0% |
! | TTGTTATTGATTGGGTCTAG+TGG | + | 15227:54715-54734 | MS.gene36282:CDS | 35.0% |
! | TTTGAAGCTTTCCATGAATC+AGG | - | 15227:54148-54167 | None:intergenic | 35.0% |
!!! | ACCCTTGTTTTGTCAAATTG+CGG | + | 15227:54084-54103 | MS.gene36282:CDS | 35.0% |
AAAAGCAACCAGATTGAACG+TGG | - | 15227:54825-54844 | None:intergenic | 40.0% | |
ACCCGCAATTTGACAAAACA+AGG | - | 15227:54089-54108 | None:intergenic | 40.0% | |
AGGGTATGATCTAGTTGTCA+TGG | + | 15227:54111-54130 | MS.gene36282:CDS | 40.0% | |
ATCAAATTTGGACTGAACCG+TGG | - | 15227:53939-53958 | None:intergenic | 40.0% | |
CCCGCAATTTGACAAAACAA+GGG | - | 15227:54088-54107 | None:intergenic | 40.0% | |
GCACAAGAGAAAAATGTGCA+GGG | - | 15227:54235-54254 | None:intergenic | 40.0% | |
GGGTAACCCTTCACTTAATT+CGG | - | 15227:54068-54087 | None:intergenic | 40.0% | |
GGGTATGATCTAGTTGTCAT+GGG | + | 15227:54112-54131 | MS.gene36282:CDS | 40.0% | |
GGGTTTGGAGAACCTTATAT+GGG | + | 15227:54736-54755 | MS.gene36282:CDS | 40.0% | |
GGTAACCCTTCACTTAATTC+GGG | - | 15227:54067-54086 | None:intergenic | 40.0% | |
TACTCCAAACACCATTCTTC+AGG | - | 15227:54774-54793 | None:intergenic | 40.0% | |
TATGATCTAGTTGTCATGGG+AGG | + | 15227:54115-54134 | MS.gene36282:CDS | 40.0% | |
TCCAACACAAAGCCCATATA+AGG | - | 15227:54751-54770 | None:intergenic | 40.0% | |
TGCACAAGAGAAAAATGTGC+AGG | - | 15227:54236-54255 | None:intergenic | 40.0% | |
TGGGTTTGGAGAACCTTATA+TGG | + | 15227:54735-54754 | MS.gene36282:CDS | 40.0% | |
TTTGTCAAATTGCGGGTGTA+GGG | + | 15227:54092-54111 | MS.gene36282:CDS | 40.0% | |
TTTGTGTTGGACCTGAAGAA+TGG | + | 15227:54760-54779 | MS.gene36282:CDS | 40.0% | |
! | ACCTTATATGGGCTTTGTGT+TGG | + | 15227:54747-54766 | MS.gene36282:CDS | 40.0% |
! | AGTTGTTGGTGGATATCGTA+CGG | + | 15227:54438-54457 | MS.gene36282:CDS | 40.0% |
! | GATAAGGAATGTTGCTTGTG+TGG | + | 15227:54675-54694 | MS.gene36282:CDS | 40.0% |
! | TTTGGTTCGAGTTTCATACC+AGG | + | 15227:53808-53827 | MS.gene36282:CDS | 40.0% |
! | TTTTGTCAAATTGCGGGTGT+AGG | + | 15227:54091-54110 | MS.gene36282:CDS | 40.0% |
!!! | CCCTTGTTTTGTCAAATTGC+GGG | + | 15227:54085-54104 | MS.gene36282:CDS | 40.0% |
!!! | CGTTCAATCTGGTTGCTTTT+TGG | + | 15227:54825-54844 | MS.gene36282:CDS | 40.0% |
ACGATGTGGCAAATGATGTG+TGG | + | 15227:54332-54351 | MS.gene36282:CDS | 45.0% | |
ATCTAGTTGTCATGGGAGGA+TGG | + | 15227:54119-54138 | MS.gene36282:CDS | 45.0% | |
ATGGGACCCGAATTAAGTGA+AGG | + | 15227:54058-54077 | MS.gene36282:CDS | 45.0% | |
CAACCATCTACACAAGTCCT+TGG | - | 15227:54562-54581 | None:intergenic | 45.0% | |
GAAAGAATGGTCTATGTGGC+AGG | + | 15227:54265-54284 | MS.gene36282:CDS | 45.0% | |
GATATCGTACGGAGATGCAA+GGG | + | 15227:54449-54468 | MS.gene36282:CDS | 45.0% | |
GCAAACAGAGATTCAAACGC+CGG | + | 15227:53865-53884 | MS.gene36282:CDS | 45.0% | |
GCAACATTCCTTATCTCCCT+AGG | - | 15227:54670-54689 | None:intergenic | 45.0% | |
GTCAGCATTTGCTTACGATG+TGG | + | 15227:54318-54337 | MS.gene36282:CDS | 45.0% | |
TACACAAGTCCTTGGACATG+TGG | - | 15227:54554-54573 | None:intergenic | 45.0% | |
TCACTTAATTCGGGTCCCAT+TGG | - | 15227:54058-54077 | None:intergenic | 45.0% | |
TCTAGTTGTCATGGGAGGAT+GGG | + | 15227:54120-54139 | MS.gene36282:CDS | 45.0% | |
TCTGGCACGATCAAAGTTGT+TGG | + | 15227:54424-54443 | MS.gene36282:CDS | 45.0% | |
TGCTCAGAAAATCCTAGCCA+CGG | + | 15227:53919-53938 | MS.gene36282:CDS | 45.0% | |
TGGACCTGAAGAATGGTGTT+TGG | + | 15227:54767-54786 | MS.gene36282:CDS | 45.0% | |
TGGGACCCGAATTAAGTGAA+GGG | + | 15227:54059-54078 | MS.gene36282:CDS | 45.0% | |
TGTCCAAGGACTTGTGTAGA+TGG | + | 15227:54556-54575 | MS.gene36282:CDS | 45.0% | |
TTCATACCAGGAATTTCCGG+CGG | + | 15227:53820-53839 | MS.gene36282:CDS | 45.0% | |
! | ATTTGGAGCGAGTTGCCAAT+GGG | + | 15227:54040-54059 | MS.gene36282:CDS | 45.0% |
! | CGCTGCTTTAGCCAATAAAC+CGG | - | 15227:53978-53997 | None:intergenic | 45.0% |
! | TATTTGGAGCGAGTTGCCAA+TGG | + | 15227:54039-54058 | MS.gene36282:CDS | 45.0% |
!! | AGACATAGCACGAGAGTGTT+TGG | + | 15227:53790-53809 | MS.gene36282:CDS | 45.0% |
!! | TTGATTGGGTCTAGTGGGTT+TGG | + | 15227:54721-54740 | MS.gene36282:CDS | 45.0% |
AGAATGGTCTATGTGGCAGG+AGG | + | 15227:54268-54287 | MS.gene36282:CDS | 50.0% | |
ATTGGATGGTGACACGTGGA+AGG | + | 15227:54630-54649 | MS.gene36282:CDS | 50.0% | |
ATTTGGACTGAACCGTGGCT+AGG | - | 15227:53934-53953 | None:intergenic | 50.0% | |
CACTCTCGTGCTATGTCTTC+TGG | - | 15227:53788-53807 | None:intergenic | 50.0% | |
GGATATCGTACGGAGATGCA+AGG | + | 15227:54448-54467 | MS.gene36282:CDS | 50.0% | |
GGCACGATCAAAGTTGTTGG+TGG | + | 15227:54427-54446 | MS.gene36282:CDS | 50.0% | |
TCCAAAAACTCCTCCTCGAC+CGG | - | 15227:54526-54545 | None:intergenic | 50.0% | |
TGGATGATGCCACATGTCCA+AGG | + | 15227:54542-54561 | MS.gene36282:CDS | 50.0% | |
TGTTTGCCACCCTTTGCTCA+CGG | - | 15227:53852-53871 | None:intergenic | 50.0% | |
! | ACGTGGCCGGTGAAATTTTC+TGG | - | 15227:54808-54827 | None:intergenic | 50.0% |
! | ATGTTGCTTGTGTGGGAGCT+TGG | + | 15227:54683-54702 | MS.gene36282:CDS | 50.0% |
! | CGTGGCCGGTGAAATTTTCT+GGG | - | 15227:54807-54826 | None:intergenic | 50.0% |
! | GATGATGTCGTGGCATTGGA+TGG | + | 15227:54616-54635 | MS.gene36282:CDS | 50.0% |
! | GTGTAAGGGTGATGATGTCG+TGG | + | 15227:54606-54625 | MS.gene36282:CDS | 50.0% |
! | GTGTTTTGTGCCGGAGACAA+TGG | + | 15227:54400-54419 | MS.gene36282:CDS | 50.0% |
! | TGTTGCTTGTGTGGGAGCTT+GGG | + | 15227:54684-54703 | MS.gene36282:CDS | 50.0% |
AAAAATGTGCAGGGCCCACC+AGG | - | 15227:54226-54245 | None:intergenic | 55.0% | |
AGGAGTTCGATGTAGCCACG+TGG | + | 15227:54491-54510 | MS.gene36282:CDS | 55.0% | |
AGTTCGATGTAGCCACGTGG+AGG | + | 15227:54494-54513 | MS.gene36282:CDS | 55.0% | |
GACCTGTACTCCTCCGTACA+CGG | - | 15227:53898-53917 | None:intergenic | 55.0% | |
GAGGATGGGACCCTGATTCA+TGG | + | 15227:54134-54153 | MS.gene36282:CDS | 55.0% | |
GCAACCAGATTGAACGTGGC+CGG | - | 15227:54821-54840 | None:intergenic | 55.0% | |
GCGATTCGAACGTAGTGCTG+AGG | + | 15227:54471-54490 | MS.gene36282:CDS | 55.0% | |
GTGGATCCCGCTTCCTGATA+TGG | + | 15227:54351-54370 | MS.gene36282:CDS | 55.0% | |
TCCCTCGCCATATCAGGAAG+CGG | - | 15227:54361-54380 | None:intergenic | 55.0% | |
TTATCTGCTACGTGGCGTCG+CGG | + | 15227:54190-54209 | MS.gene36282:CDS | 55.0% | |
TTCACCGGCCACGTTCAATC+TGG | + | 15227:54814-54833 | MS.gene36282:CDS | 55.0% | |
! | GGGTGATGATGTCGTGGCAT+TGG | + | 15227:54612-54631 | MS.gene36282:CDS | 55.0% |
! | TCCGGTCGAGGAGGAGTTTT+TGG | + | 15227:54522-54541 | MS.gene36282:CDS | 55.0% |
! | TGGCATTGGATGGTGACACG+TGG | + | 15227:54626-54645 | MS.gene36282:CDS | 55.0% |
!! | CGAAGGTGCCTAGGGAGATA+AGG | + | 15227:54659-54678 | MS.gene36282:CDS | 55.0% |
CCCGCTTCCTGATATGGCGA+GGG | + | 15227:54357-54376 | MS.gene36282:CDS | 60.0% | |
CCCTCGCCATATCAGGAAGC+GGG | - | 15227:54360-54379 | None:intergenic | 60.0% | |
CGATGTAGCCACGTGGAGGT+GGG | + | 15227:54498-54517 | MS.gene36282:CDS | 60.0% | |
CGGTAGCCACCGTGAGCAAA+GGG | + | 15227:53840-53859 | MS.gene36282:CDS | 60.0% | |
CGTGCCAGAGCCATTGTCTC+CGG | - | 15227:54413-54432 | None:intergenic | 60.0% | |
CTCCGTACACGGCGAAACTC+CGG | - | 15227:53887-53906 | None:intergenic | 60.0% | |
GATGTAGCCACGTGGAGGTG+GGG | + | 15227:54499-54518 | MS.gene36282:CDS | 60.0% | |
GGATGGTGACACGTGGAAGG+TGG | + | 15227:54633-54652 | MS.gene36282:CDS | 60.0% | |
TAGCCACCGTGAGCAAAGGG+TGG | + | 15227:53843-53862 | MS.gene36282:CDS | 60.0% | |
TATCTGCTACGTGGCGTCGC+GGG | + | 15227:54191-54210 | MS.gene36282:CDS | 60.0% | |
TCACGCTCCCTCGCCATATC+AGG | - | 15227:54367-54386 | None:intergenic | 60.0% | |
TCCCGCTTCCTGATATGGCG+AGG | + | 15227:54356-54375 | MS.gene36282:CDS | 60.0% | |
TCGATGTAGCCACGTGGAGG+TGG | + | 15227:54497-54516 | MS.gene36282:CDS | 60.0% | |
TGGCTACCGCCGGAAATTCC+TGG | - | 15227:53829-53848 | None:intergenic | 60.0% | |
TGGTGACACGTGGAAGGTGG+TGG | + | 15227:54636-54655 | MS.gene36282:CDS | 60.0% | |
TGTGCCGGAGACAATGGCTC+TGG | + | 15227:54406-54425 | MS.gene36282:CDS | 60.0% | |
TGTGGCAGGAGGACATGACG+AGG | + | 15227:54279-54298 | MS.gene36282:CDS | 60.0% | |
TTGCCACCCTTTGCTCACGG+TGG | - | 15227:53849-53868 | None:intergenic | 60.0% | |
ATCTGCTACGTGGCGTCGCG+GGG | + | 15227:54192-54211 | MS.gene36282:CDS | 65.0% | |
CGCCGGAGTTTCGCCGTGTA+CGG | + | 15227:53882-53901 | MS.gene36282:CDS | 65.0% | |
CGGAGTTTCGCCGTGTACGG+AGG | + | 15227:53885-53904 | MS.gene36282:CDS | 65.0% | |
GCAGGGCCCACCAGGCATAT+CGG | - | 15227:54218-54237 | None:intergenic | 65.0% | |
GCGGTAGCCACCGTGAGCAA+AGG | + | 15227:53839-53858 | MS.gene36282:CDS | 65.0% | |
TTGCTCACGGTGGCTACCGC+CGG | - | 15227:53839-53858 | None:intergenic | 65.0% | |
! | CACGTGGAAGGTGGTGGCGA+AGG | + | 15227:54642-54661 | MS.gene36282:CDS | 65.0% |
! | CGCCGTGTACGGAGGAGTAC+AGG | + | 15227:53893-53912 | MS.gene36282:CDS | 65.0% |
!! | AGGTGGTGGCGAAGGTGCCT+AGG | + | 15227:54650-54669 | MS.gene36282:CDS | 65.0% |
!! | GGTGGTGGCGAAGGTGCCTA+GGG | + | 15227:54651-54670 | MS.gene36282:CDS | 65.0% |
AGCCACGTGGAGGTGGGGTC+CGG | + | 15227:54504-54523 | MS.gene36282:CDS | 70.0% | |
GCGGGGCCGATATGCCTGGT+GGG | + | 15227:54209-54228 | MS.gene36282:CDS | 70.0% | |
CGCGGGGCCGATATGCCTGG+TGG | + | 15227:54208-54227 | MS.gene36282:CDS | 75.0% | |
CGTCGCGGGGCCGATATGCC+TGG | + | 15227:54205-54224 | MS.gene36282:CDS | 75.0% | |
GACCGGACCCCACCTCCACG+TGG | - | 15227:54509-54528 | None:intergenic | 75.0% | |
GAGGTGGGGTCCGGTCGAGG+AGG | + | 15227:54513-54532 | MS.gene36282:CDS | 75.0% | |
GTGGAGGTGGGGTCCGGTCG+AGG | + | 15227:54510-54529 | MS.gene36282:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
15227 | gene | 53764 | 54855 | 53764 | ID=MS.gene36282 |
15227 | mRNA | 53764 | 54855 | 53764 | ID=MS.gene36282.t1;Parent=MS.gene36282 |
15227 | exon | 53764 | 54855 | 53764 | ID=MS.gene36282.t1.exon1;Parent=MS.gene36282.t1 |
15227 | CDS | 53764 | 54855 | 53764 | ID=cds.MS.gene36282.t1;Parent=MS.gene36282.t1 |
Gene Sequence |
Protein sequence |