AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36282


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36282.t1 MTR_2g102370 93.681 364 22 1 1 363 1 364 0.0 705
MS.gene36282.t1 MTR_4g011900 59.504 363 142 1 1 363 3 360 2.94e-161 456
MS.gene36282.t1 MTR_2g102355 88.525 122 14 0 175 296 46 167 4.56e-75 230
MS.gene36282.t1 MTR_8g085650 36.240 367 200 8 1 363 5 341 6.36e-62 202
MS.gene36282.t1 MTR_7g095220 27.341 267 156 8 2 260 3 239 3.37e-20 90.9
MS.gene36282.t1 MTR_8g085600 26.821 302 179 11 3 296 77 344 3.16e-15 77.0
MS.gene36282.t1 MTR_8g080370 27.074 229 142 7 3 229 51 256 2.09e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36282.t1 AT1G80440 47.568 370 171 6 1 363 1 354 1.23e-119 350
MS.gene36282.t1 AT1G15670 48.087 366 180 4 1 363 1 359 1.41e-119 350
MS.gene36282.t1 AT2G44130 33.677 291 155 7 2 267 18 295 1.30e-41 150
MS.gene36282.t1 AT3G59940 28.928 401 228 11 2 352 14 407 7.34e-40 146
MS.gene36282.t1 AT3G63220 25.378 331 196 11 3 322 4 294 5.53e-19 87.4
MS.gene36282.t1 AT3G63220 25.378 331 196 11 3 322 11 301 5.88e-19 87.4
MS.gene36282.t1 AT3G63220 25.378 331 196 11 3 322 11 301 5.88e-19 87.4
MS.gene36282.t1 AT1G67480 29.237 236 128 8 3 229 39 244 2.45e-13 70.9
MS.gene36282.t1 AT1G67480 29.237 236 128 8 3 229 39 244 2.45e-13 70.9
MS.gene36282.t1 AT1G67480 29.237 236 128 8 3 229 39 244 2.45e-13 70.9

Find 0 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATAAACTAAATGTAT+TGG + 15227:54003-54022 MS.gene36282:CDS 10.0%
!!! AATACATTTAGTTTATAAAT+TGG - 15227:54004-54023 None:intergenic 10.0%
!!! ATACATTTAGTTTATAAATT+GGG - 15227:54003-54022 None:intergenic 10.0%
!!! ATAATTTTTTATCTGCTACG+TGG + 15227:54182-54201 MS.gene36282:CDS 25.0%
!!! GCTTTTTTCTGAATCAAATT+TGG - 15227:53951-53970 None:intergenic 25.0%
AATGTATTGGAAACTGAAAC+AGG + 15227:54016-54035 MS.gene36282:CDS 30.0%
AGAAGAATGTACATGTGTAA+GGG + 15227:54592-54611 MS.gene36282:CDS 30.0%
GATTCAGAAAAAAGCAAAAC+CGG + 15227:53956-53975 MS.gene36282:CDS 30.0%
TTCATGGAAAGCTTCAAATT+CGG + 15227:54150-54169 MS.gene36282:CDS 30.0%
! AAAAAGCAAAACCGGTTTAT+TGG + 15227:53964-53983 MS.gene36282:CDS 30.0%
! CAGATGCATTGTTATTGATT+GGG + 15227:54707-54726 MS.gene36282:CDS 30.0%
AGTTTCATACCAGGAATTTC+CGG + 15227:53817-53836 MS.gene36282:CDS 35.0%
GAAAACCCAGAAAATTTCAC+CGG + 15227:54799-54818 MS.gene36282:CDS 35.0%
GAGAAGAATGTACATGTGTA+AGG + 15227:54591-54610 MS.gene36282:CDS 35.0%
TCATGAAAGAATGGTCTATG+TGG + 15227:54261-54280 MS.gene36282:CDS 35.0%
TGCATCAGATCATGAAAGAA+TGG + 15227:54252-54271 MS.gene36282:CDS 35.0%
TGGAAACTGAAACAGGTATT+TGG + 15227:54023-54042 MS.gene36282:CDS 35.0%
TTGAAGCTTTCCATGAATCA+GGG - 15227:54147-54166 None:intergenic 35.0%
TTGTGTAGATGGTTGTGAAT+TGG + 15227:54567-54586 MS.gene36282:CDS 35.0%
! ATAAGGAATGTTGCTTGTGT+GGG + 15227:54676-54695 MS.gene36282:CDS 35.0%
! GCAGATGCATTGTTATTGAT+TGG + 15227:54706-54725 MS.gene36282:CDS 35.0%
! TGTAAGATAGTGTTTTGTGC+CGG + 15227:54391-54410 MS.gene36282:CDS 35.0%
! TGTTATTGATTGGGTCTAGT+GGG + 15227:54716-54735 MS.gene36282:CDS 35.0%
! TTGTTATTGATTGGGTCTAG+TGG + 15227:54715-54734 MS.gene36282:CDS 35.0%
! TTTGAAGCTTTCCATGAATC+AGG - 15227:54148-54167 None:intergenic 35.0%
!!! ACCCTTGTTTTGTCAAATTG+CGG + 15227:54084-54103 MS.gene36282:CDS 35.0%
AAAAGCAACCAGATTGAACG+TGG - 15227:54825-54844 None:intergenic 40.0%
ACCCGCAATTTGACAAAACA+AGG - 15227:54089-54108 None:intergenic 40.0%
AGGGTATGATCTAGTTGTCA+TGG + 15227:54111-54130 MS.gene36282:CDS 40.0%
ATCAAATTTGGACTGAACCG+TGG - 15227:53939-53958 None:intergenic 40.0%
CCCGCAATTTGACAAAACAA+GGG - 15227:54088-54107 None:intergenic 40.0%
GCACAAGAGAAAAATGTGCA+GGG - 15227:54235-54254 None:intergenic 40.0%
GGGTAACCCTTCACTTAATT+CGG - 15227:54068-54087 None:intergenic 40.0%
GGGTATGATCTAGTTGTCAT+GGG + 15227:54112-54131 MS.gene36282:CDS 40.0%
GGGTTTGGAGAACCTTATAT+GGG + 15227:54736-54755 MS.gene36282:CDS 40.0%
GGTAACCCTTCACTTAATTC+GGG - 15227:54067-54086 None:intergenic 40.0%
TACTCCAAACACCATTCTTC+AGG - 15227:54774-54793 None:intergenic 40.0%
TATGATCTAGTTGTCATGGG+AGG + 15227:54115-54134 MS.gene36282:CDS 40.0%
TCCAACACAAAGCCCATATA+AGG - 15227:54751-54770 None:intergenic 40.0%
TGCACAAGAGAAAAATGTGC+AGG - 15227:54236-54255 None:intergenic 40.0%
TGGGTTTGGAGAACCTTATA+TGG + 15227:54735-54754 MS.gene36282:CDS 40.0%
TTTGTCAAATTGCGGGTGTA+GGG + 15227:54092-54111 MS.gene36282:CDS 40.0%
TTTGTGTTGGACCTGAAGAA+TGG + 15227:54760-54779 MS.gene36282:CDS 40.0%
! ACCTTATATGGGCTTTGTGT+TGG + 15227:54747-54766 MS.gene36282:CDS 40.0%
! AGTTGTTGGTGGATATCGTA+CGG + 15227:54438-54457 MS.gene36282:CDS 40.0%
! GATAAGGAATGTTGCTTGTG+TGG + 15227:54675-54694 MS.gene36282:CDS 40.0%
! TTTGGTTCGAGTTTCATACC+AGG + 15227:53808-53827 MS.gene36282:CDS 40.0%
! TTTTGTCAAATTGCGGGTGT+AGG + 15227:54091-54110 MS.gene36282:CDS 40.0%
!!! CCCTTGTTTTGTCAAATTGC+GGG + 15227:54085-54104 MS.gene36282:CDS 40.0%
!!! CGTTCAATCTGGTTGCTTTT+TGG + 15227:54825-54844 MS.gene36282:CDS 40.0%
ACGATGTGGCAAATGATGTG+TGG + 15227:54332-54351 MS.gene36282:CDS 45.0%
ATCTAGTTGTCATGGGAGGA+TGG + 15227:54119-54138 MS.gene36282:CDS 45.0%
ATGGGACCCGAATTAAGTGA+AGG + 15227:54058-54077 MS.gene36282:CDS 45.0%
CAACCATCTACACAAGTCCT+TGG - 15227:54562-54581 None:intergenic 45.0%
GAAAGAATGGTCTATGTGGC+AGG + 15227:54265-54284 MS.gene36282:CDS 45.0%
GATATCGTACGGAGATGCAA+GGG + 15227:54449-54468 MS.gene36282:CDS 45.0%
GCAAACAGAGATTCAAACGC+CGG + 15227:53865-53884 MS.gene36282:CDS 45.0%
GCAACATTCCTTATCTCCCT+AGG - 15227:54670-54689 None:intergenic 45.0%
GTCAGCATTTGCTTACGATG+TGG + 15227:54318-54337 MS.gene36282:CDS 45.0%
TACACAAGTCCTTGGACATG+TGG - 15227:54554-54573 None:intergenic 45.0%
TCACTTAATTCGGGTCCCAT+TGG - 15227:54058-54077 None:intergenic 45.0%
TCTAGTTGTCATGGGAGGAT+GGG + 15227:54120-54139 MS.gene36282:CDS 45.0%
TCTGGCACGATCAAAGTTGT+TGG + 15227:54424-54443 MS.gene36282:CDS 45.0%
TGCTCAGAAAATCCTAGCCA+CGG + 15227:53919-53938 MS.gene36282:CDS 45.0%
TGGACCTGAAGAATGGTGTT+TGG + 15227:54767-54786 MS.gene36282:CDS 45.0%
TGGGACCCGAATTAAGTGAA+GGG + 15227:54059-54078 MS.gene36282:CDS 45.0%
TGTCCAAGGACTTGTGTAGA+TGG + 15227:54556-54575 MS.gene36282:CDS 45.0%
TTCATACCAGGAATTTCCGG+CGG + 15227:53820-53839 MS.gene36282:CDS 45.0%
! ATTTGGAGCGAGTTGCCAAT+GGG + 15227:54040-54059 MS.gene36282:CDS 45.0%
! CGCTGCTTTAGCCAATAAAC+CGG - 15227:53978-53997 None:intergenic 45.0%
! TATTTGGAGCGAGTTGCCAA+TGG + 15227:54039-54058 MS.gene36282:CDS 45.0%
!! AGACATAGCACGAGAGTGTT+TGG + 15227:53790-53809 MS.gene36282:CDS 45.0%
!! TTGATTGGGTCTAGTGGGTT+TGG + 15227:54721-54740 MS.gene36282:CDS 45.0%
AGAATGGTCTATGTGGCAGG+AGG + 15227:54268-54287 MS.gene36282:CDS 50.0%
ATTGGATGGTGACACGTGGA+AGG + 15227:54630-54649 MS.gene36282:CDS 50.0%
ATTTGGACTGAACCGTGGCT+AGG - 15227:53934-53953 None:intergenic 50.0%
CACTCTCGTGCTATGTCTTC+TGG - 15227:53788-53807 None:intergenic 50.0%
GGATATCGTACGGAGATGCA+AGG + 15227:54448-54467 MS.gene36282:CDS 50.0%
GGCACGATCAAAGTTGTTGG+TGG + 15227:54427-54446 MS.gene36282:CDS 50.0%
TCCAAAAACTCCTCCTCGAC+CGG - 15227:54526-54545 None:intergenic 50.0%
TGGATGATGCCACATGTCCA+AGG + 15227:54542-54561 MS.gene36282:CDS 50.0%
TGTTTGCCACCCTTTGCTCA+CGG - 15227:53852-53871 None:intergenic 50.0%
! ACGTGGCCGGTGAAATTTTC+TGG - 15227:54808-54827 None:intergenic 50.0%
! ATGTTGCTTGTGTGGGAGCT+TGG + 15227:54683-54702 MS.gene36282:CDS 50.0%
! CGTGGCCGGTGAAATTTTCT+GGG - 15227:54807-54826 None:intergenic 50.0%
! GATGATGTCGTGGCATTGGA+TGG + 15227:54616-54635 MS.gene36282:CDS 50.0%
! GTGTAAGGGTGATGATGTCG+TGG + 15227:54606-54625 MS.gene36282:CDS 50.0%
! GTGTTTTGTGCCGGAGACAA+TGG + 15227:54400-54419 MS.gene36282:CDS 50.0%
! TGTTGCTTGTGTGGGAGCTT+GGG + 15227:54684-54703 MS.gene36282:CDS 50.0%
AAAAATGTGCAGGGCCCACC+AGG - 15227:54226-54245 None:intergenic 55.0%
AGGAGTTCGATGTAGCCACG+TGG + 15227:54491-54510 MS.gene36282:CDS 55.0%
AGTTCGATGTAGCCACGTGG+AGG + 15227:54494-54513 MS.gene36282:CDS 55.0%
GACCTGTACTCCTCCGTACA+CGG - 15227:53898-53917 None:intergenic 55.0%
GAGGATGGGACCCTGATTCA+TGG + 15227:54134-54153 MS.gene36282:CDS 55.0%
GCAACCAGATTGAACGTGGC+CGG - 15227:54821-54840 None:intergenic 55.0%
GCGATTCGAACGTAGTGCTG+AGG + 15227:54471-54490 MS.gene36282:CDS 55.0%
GTGGATCCCGCTTCCTGATA+TGG + 15227:54351-54370 MS.gene36282:CDS 55.0%
TCCCTCGCCATATCAGGAAG+CGG - 15227:54361-54380 None:intergenic 55.0%
TTATCTGCTACGTGGCGTCG+CGG + 15227:54190-54209 MS.gene36282:CDS 55.0%
TTCACCGGCCACGTTCAATC+TGG + 15227:54814-54833 MS.gene36282:CDS 55.0%
! GGGTGATGATGTCGTGGCAT+TGG + 15227:54612-54631 MS.gene36282:CDS 55.0%
! TCCGGTCGAGGAGGAGTTTT+TGG + 15227:54522-54541 MS.gene36282:CDS 55.0%
! TGGCATTGGATGGTGACACG+TGG + 15227:54626-54645 MS.gene36282:CDS 55.0%
!! CGAAGGTGCCTAGGGAGATA+AGG + 15227:54659-54678 MS.gene36282:CDS 55.0%
CCCGCTTCCTGATATGGCGA+GGG + 15227:54357-54376 MS.gene36282:CDS 60.0%
CCCTCGCCATATCAGGAAGC+GGG - 15227:54360-54379 None:intergenic 60.0%
CGATGTAGCCACGTGGAGGT+GGG + 15227:54498-54517 MS.gene36282:CDS 60.0%
CGGTAGCCACCGTGAGCAAA+GGG + 15227:53840-53859 MS.gene36282:CDS 60.0%
CGTGCCAGAGCCATTGTCTC+CGG - 15227:54413-54432 None:intergenic 60.0%
CTCCGTACACGGCGAAACTC+CGG - 15227:53887-53906 None:intergenic 60.0%
GATGTAGCCACGTGGAGGTG+GGG + 15227:54499-54518 MS.gene36282:CDS 60.0%
GGATGGTGACACGTGGAAGG+TGG + 15227:54633-54652 MS.gene36282:CDS 60.0%
TAGCCACCGTGAGCAAAGGG+TGG + 15227:53843-53862 MS.gene36282:CDS 60.0%
TATCTGCTACGTGGCGTCGC+GGG + 15227:54191-54210 MS.gene36282:CDS 60.0%
TCACGCTCCCTCGCCATATC+AGG - 15227:54367-54386 None:intergenic 60.0%
TCCCGCTTCCTGATATGGCG+AGG + 15227:54356-54375 MS.gene36282:CDS 60.0%
TCGATGTAGCCACGTGGAGG+TGG + 15227:54497-54516 MS.gene36282:CDS 60.0%
TGGCTACCGCCGGAAATTCC+TGG - 15227:53829-53848 None:intergenic 60.0%
TGGTGACACGTGGAAGGTGG+TGG + 15227:54636-54655 MS.gene36282:CDS 60.0%
TGTGCCGGAGACAATGGCTC+TGG + 15227:54406-54425 MS.gene36282:CDS 60.0%
TGTGGCAGGAGGACATGACG+AGG + 15227:54279-54298 MS.gene36282:CDS 60.0%
TTGCCACCCTTTGCTCACGG+TGG - 15227:53849-53868 None:intergenic 60.0%
ATCTGCTACGTGGCGTCGCG+GGG + 15227:54192-54211 MS.gene36282:CDS 65.0%
CGCCGGAGTTTCGCCGTGTA+CGG + 15227:53882-53901 MS.gene36282:CDS 65.0%
CGGAGTTTCGCCGTGTACGG+AGG + 15227:53885-53904 MS.gene36282:CDS 65.0%
GCAGGGCCCACCAGGCATAT+CGG - 15227:54218-54237 None:intergenic 65.0%
GCGGTAGCCACCGTGAGCAA+AGG + 15227:53839-53858 MS.gene36282:CDS 65.0%
TTGCTCACGGTGGCTACCGC+CGG - 15227:53839-53858 None:intergenic 65.0%
! CACGTGGAAGGTGGTGGCGA+AGG + 15227:54642-54661 MS.gene36282:CDS 65.0%
! CGCCGTGTACGGAGGAGTAC+AGG + 15227:53893-53912 MS.gene36282:CDS 65.0%
!! AGGTGGTGGCGAAGGTGCCT+AGG + 15227:54650-54669 MS.gene36282:CDS 65.0%
!! GGTGGTGGCGAAGGTGCCTA+GGG + 15227:54651-54670 MS.gene36282:CDS 65.0%
AGCCACGTGGAGGTGGGGTC+CGG + 15227:54504-54523 MS.gene36282:CDS 70.0%
GCGGGGCCGATATGCCTGGT+GGG + 15227:54209-54228 MS.gene36282:CDS 70.0%
CGCGGGGCCGATATGCCTGG+TGG + 15227:54208-54227 MS.gene36282:CDS 75.0%
CGTCGCGGGGCCGATATGCC+TGG + 15227:54205-54224 MS.gene36282:CDS 75.0%
GACCGGACCCCACCTCCACG+TGG - 15227:54509-54528 None:intergenic 75.0%
GAGGTGGGGTCCGGTCGAGG+AGG + 15227:54513-54532 MS.gene36282:CDS 75.0%
GTGGAGGTGGGGTCCGGTCG+AGG + 15227:54510-54529 MS.gene36282:CDS 75.0%


Chromosome Type Strat End Strand Name
15227 gene 53764 54855 53764 ID=MS.gene36282
15227 mRNA 53764 54855 53764 ID=MS.gene36282.t1;Parent=MS.gene36282
15227 exon 53764 54855 53764 ID=MS.gene36282.t1.exon1;Parent=MS.gene36282.t1
15227 CDS 53764 54855 53764 ID=cds.MS.gene36282.t1;Parent=MS.gene36282.t1
Gene Sequence

>MS.gene36282

ATGGAGTTGATTTCAGGTTTACCAGAAGACATAGCACGAGAGTGTTTGGTTCGAGTTTCATACCAGGAATTTCCGGCGGTAGCCACCGTGAGCAAAGGGTGGCAAACAGAGATTCAAACGCCGGAGTTTCGCCGTGTACGGAGGAGTACAGGTCATGCTCAGAAAATCCTAGCCACGGTTCAGTCCAAATTTGATTCAGAAAAAAGCAAAACCGGTTTATTGGCTAAAGCAGCGAACCCAATTTATAAACTAAATGTATTGGAAACTGAAACAGGTATTTGGAGCGAGTTGCCAATGGGACCCGAATTAAGTGAAGGGTTACCCTTGTTTTGTCAAATTGCGGGTGTAGGGTATGATCTAGTTGTCATGGGAGGATGGGACCCTGATTCATGGAAAGCTTCAAATTCGGTGTTTATTTATAATTTTTTATCTGCTACGTGGCGTCGCGGGGCCGATATGCCTGGTGGGCCCTGCACATTTTTCTCTTGTGCATCAGATCATGAAAGAATGGTCTATGTGGCAGGAGGACATGACGAGGAGAAGAATGCATTGAAGTCAGCATTTGCTTACGATGTGGCAAATGATGTGTGGATCCCGCTTCCTGATATGGCGAGGGAGCGTGATGAGTGTAAGATAGTGTTTTGTGCCGGAGACAATGGCTCTGGCACGATCAAAGTTGTTGGTGGATATCGTACGGAGATGCAAGGGCGATTCGAACGTAGTGCTGAGGAGTTCGATGTAGCCACGTGGAGGTGGGGTCCGGTCGAGGAGGAGTTTTTGGATGATGCCACATGTCCAAGGACTTGTGTAGATGGTTGTGAATTGGAGAGAAGAATGTACATGTGTAAGGGTGATGATGTCGTGGCATTGGATGGTGACACGTGGAAGGTGGTGGCGAAGGTGCCTAGGGAGATAAGGAATGTTGCTTGTGTGGGAGCTTGGGCAGATGCATTGTTATTGATTGGGTCTAGTGGGTTTGGAGAACCTTATATGGGCTTTGTGTTGGACCTGAAGAATGGTGTTTGGAGTAAACTTGAAAACCCAGAAAATTTCACCGGCCACGTTCAATCTGGTTGCTTTTTGGAGATTTAA

Protein sequence

>MS.gene36282.t1

MELISGLPEDIARECLVRVSYQEFPAVATVSKGWQTEIQTPEFRRVRRSTGHAQKILATVQSKFDSEKSKTGLLAKAANPIYKLNVLETETGIWSELPMGPELSEGLPLFCQIAGVGYDLVVMGGWDPDSWKASNSVFIYNFLSATWRRGADMPGGPCTFFSCASDHERMVYVAGGHDEEKNALKSAFAYDVANDVWIPLPDMARERDECKIVFCAGDNGSGTIKVVGGYRTEMQGRFERSAEEFDVATWRWGPVEEEFLDDATCPRTCVDGCELERRMYMCKGDDVVALDGDTWKVVAKVPREIRNVACVGAWADALLLIGSSGFGEPYMGFVLDLKNGVWSKLENPENFTGHVQSGCFLEI