Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36776.t1 | XP_003627005.1 | 99.8 | 832 | 2 | 0 | 1 | 832 | 1 | 832 | 0.00E+00 | 1680.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36776.t1 | Q9ZU11 | 83.7 | 838 | 127 | 5 | 1 | 832 | 3 | 836 | 0.0e+00 | 1421.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36776.t1 | G7LFY5 | 99.8 | 832 | 2 | 0 | 1 | 832 | 1 | 832 | 0.0e+00 | 1680.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene36776.t1 | TF | HB-HD-ZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene014625 | MS.gene36776 | PPI |
MS.gene40724 | MS.gene36776 | PPI |
MS.gene031245 | MS.gene36776 | PPI |
MS.gene40278 | MS.gene36776 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36776.t1 | MTR_8g013980 | 99.760 | 832 | 2 | 0 | 1 | 832 | 1 | 832 | 0.0 | 1730 |
MS.gene36776.t1 | MTR_2g101190 | 88.650 | 837 | 89 | 4 | 1 | 832 | 1 | 836 | 0.0 | 1557 |
MS.gene36776.t1 | MTR_3g109800 | 81.220 | 836 | 145 | 5 | 2 | 832 | 7 | 835 | 0.0 | 1434 |
MS.gene36776.t1 | MTR_3g109800 | 81.091 | 788 | 137 | 5 | 2 | 784 | 7 | 787 | 0.0 | 1339 |
MS.gene36776.t1 | MTR_3g109800 | 80.797 | 703 | 125 | 4 | 2 | 699 | 7 | 704 | 0.0 | 1194 |
MS.gene36776.t1 | MTR_2g030130 | 66.187 | 834 | 264 | 9 | 11 | 832 | 9 | 836 | 0.0 | 1149 |
MS.gene36776.t1 | MTR_4g058970 | 64.397 | 837 | 276 | 10 | 7 | 832 | 21 | 846 | 0.0 | 1108 |
MS.gene36776.t1 | MTR_2g094520 | 59.952 | 839 | 307 | 11 | 8 | 832 | 16 | 839 | 0.0 | 1038 |
MS.gene36776.t1 | MTR_3g109800 | 79.195 | 596 | 121 | 2 | 238 | 832 | 1 | 594 | 0.0 | 1013 |
MS.gene36776.t1 | MTR_8g432540 | 21.912 | 502 | 299 | 17 | 195 | 667 | 369 | 806 | 5.96e-14 | 76.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36776.t1 | AT1G52150 | 83.652 | 838 | 127 | 5 | 1 | 832 | 3 | 836 | 0.0 | 1469 |
MS.gene36776.t1 | AT1G52150 | 83.552 | 839 | 127 | 6 | 1 | 832 | 3 | 837 | 0.0 | 1464 |
MS.gene36776.t1 | AT1G52150 | 83.165 | 790 | 123 | 5 | 1 | 784 | 3 | 788 | 0.0 | 1368 |
MS.gene36776.t1 | AT4G32880 | 77.197 | 842 | 173 | 9 | 1 | 832 | 1 | 833 | 0.0 | 1354 |
MS.gene36776.t1 | AT2G34710 | 65.077 | 839 | 269 | 13 | 11 | 832 | 21 | 852 | 0.0 | 1104 |
MS.gene36776.t1 | AT1G30490 | 63.294 | 850 | 279 | 14 | 1 | 832 | 7 | 841 | 0.0 | 1081 |
MS.gene36776.t1 | AT5G60690 | 63.095 | 840 | 282 | 10 | 7 | 832 | 17 | 842 | 0.0 | 1079 |
MS.gene36776.t1 | AT5G32670 | 63.514 | 74 | 27 | 0 | 281 | 354 | 37 | 110 | 9.86e-25 | 102 |
MS.gene36776.t1 | AT4G00730 | 23.333 | 540 | 309 | 19 | 15 | 475 | 137 | 650 | 2.86e-19 | 93.6 |
MS.gene36776.t1 | AT4G04890 | 23.413 | 504 | 286 | 20 | 196 | 668 | 302 | 736 | 1.33e-17 | 88.2 |
MS.gene36776.t1 | AT4G04890 | 23.413 | 504 | 286 | 20 | 196 | 668 | 302 | 736 | 1.33e-17 | 88.2 |
MS.gene36776.t1 | AT1G05230 | 21.415 | 509 | 290 | 15 | 189 | 668 | 288 | 715 | 4.08e-13 | 73.6 |
MS.gene36776.t1 | AT1G05230 | 21.218 | 509 | 293 | 15 | 189 | 668 | 288 | 717 | 2.03e-12 | 71.6 |
MS.gene36776.t1 | AT1G05230 | 21.218 | 509 | 293 | 15 | 189 | 668 | 288 | 717 | 2.03e-12 | 71.6 |
MS.gene36776.t1 | AT1G05230 | 21.218 | 509 | 293 | 15 | 189 | 668 | 288 | 717 | 2.03e-12 | 71.6 |
MS.gene36776.t1 | AT1G05230 | 21.218 | 509 | 293 | 15 | 189 | 668 | 288 | 717 | 2.03e-12 | 71.6 |
MS.gene36776.t1 | AT1G05230 | 21.218 | 509 | 293 | 15 | 189 | 668 | 288 | 717 | 2.03e-12 | 71.6 |
MS.gene36776.t1 | AT1G05230 | 21.218 | 509 | 293 | 15 | 189 | 668 | 288 | 717 | 2.03e-12 | 71.6 |
MS.gene36776.t1 | AT1G05230 | 21.218 | 509 | 293 | 15 | 189 | 668 | 288 | 717 | 2.03e-12 | 71.6 |
MS.gene36776.t1 | AT1G05230 | 21.218 | 509 | 293 | 15 | 189 | 668 | 288 | 717 | 2.03e-12 | 71.6 |
MS.gene36776.t1 | AT1G05230 | 21.218 | 509 | 293 | 15 | 189 | 668 | 288 | 717 | 2.03e-12 | 71.6 |
MS.gene36776.t1 | AT1G05230 | 21.218 | 509 | 293 | 15 | 189 | 668 | 288 | 717 | 2.03e-12 | 71.6 |
MS.gene36776.t1 | AT1G73360 | 28.287 | 251 | 135 | 10 | 15 | 237 | 35 | 268 | 6.98e-11 | 66.6 |
MS.gene36776.t1 | AT3G61150 | 31.387 | 137 | 71 | 4 | 7 | 143 | 105 | 218 | 8.01e-11 | 66.2 |
Find 228 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTACAAGGGCCAACTTTAA+TGG | 0.244448 | 8.2:+79045799 | None:intergenic |
TGGCACCTGCTCGCGACTTC+TGG | 0.256710 | 8.2:-79047440 | MS.gene36776:CDS |
AGCAGAGGAAAGAGTCTTTC+AGG | 0.278587 | 8.2:-79048980 | MS.gene36776:CDS |
TTCATCACCTGACAAGTTAA+TGG | 0.282278 | 8.2:-79046459 | MS.gene36776:CDS |
AGTGATAATGCTGGAAATTC+TGG | 0.282961 | 8.2:-79044808 | MS.gene36776:CDS |
CTTCGAATTGAACTTGGTTT+AGG | 0.284511 | 8.2:+79049789 | None:intergenic |
CTCCATCAGCAGCTTATTCA+TGG | 0.284981 | 8.2:+79048929 | None:intergenic |
CGTATCATCCCTCTTGAATC+TGG | 0.289816 | 8.2:-79045001 | MS.gene36776:CDS |
GTTGGCCCTTGTAGCTTAAC+AGG | 0.293248 | 8.2:-79045791 | MS.gene36776:CDS |
ATTGGATCTGCAACAGTTAT+AGG | 0.295090 | 8.2:-79044579 | MS.gene36776:intron |
TGTAGACCTGTTGAATAATC+TGG | 0.306622 | 8.2:+79043309 | None:intergenic |
CTGCAGGACTTGCATCCCTT+GGG | 0.308926 | 8.2:+79048296 | None:intergenic |
AATAAGCACTTAATGGATAA+TGG | 0.320902 | 8.2:-79049873 | MS.gene36776:CDS |
GTGCTTATTACCATCCTTGC+AGG | 0.321255 | 8.2:+79049887 | None:intergenic |
GGATGGTAATAAGCACTTAA+TGG | 0.322988 | 8.2:-79049880 | MS.gene36776:CDS |
AACCAAGGCAAATCAAAGTT+TGG | 0.324378 | 8.2:-79049725 | MS.gene36776:CDS |
TGACTCACAACTCGTGTCTT+TGG | 0.332611 | 8.2:+79048360 | None:intergenic |
TGAGCAAGGGTTTGTGCCTC+AGG | 0.333658 | 8.2:+79044601 | None:intergenic |
TCTCACCTGGTGTATGAAAA+TGG | 0.337274 | 8.2:-79048879 | MS.gene36776:CDS |
ATACCTTCATTCCAGGCATT+TGG | 0.342067 | 8.2:+79048087 | None:intergenic |
CTCCTTCACAAGGTCTTATC+AGG | 0.342292 | 8.2:+79047134 | None:intergenic |
CCTGCAGGACTTGCATCCCT+TGG | 0.343323 | 8.2:+79048295 | None:intergenic |
TATAGTGGACGCAGTACTTC+TGG | 0.345373 | 8.2:+79046974 | None:intergenic |
TCTCTGGCCATCATTTCTTC+AGG | 0.345556 | 8.2:+79045577 | None:intergenic |
GCCCTTGACATTGGCCCTAC+TGG | 0.345949 | 8.2:-79044844 | MS.gene36776:CDS |
TACAGGCTTTACGTCATCTA+AGG | 0.346410 | 8.2:-79046742 | MS.gene36776:intron |
TCTTGAGATACCTTCATTCC+AGG | 0.353242 | 8.2:+79048080 | None:intergenic |
AAGTTTGGTTTCAGAATAGA+AGG | 0.353326 | 8.2:-79049710 | MS.gene36776:intron |
CAAGGCATCAATGCTATTAC+AGG | 0.357953 | 8.2:-79046378 | MS.gene36776:intron |
CTGTGTAAGCATCCATATTA+TGG | 0.372634 | 8.2:+79045828 | None:intergenic |
CCAGCATGTCCAGCCCTGCC+TGG | 0.373494 | 8.2:+79043417 | None:intergenic |
TTTGCTTTATGTTTGTGAAC+TGG | 0.383504 | 8.2:-79043037 | MS.gene36776:CDS |
CTGAATCTTTCCTTTGGCAA+TGG | 0.387020 | 8.2:-79046434 | MS.gene36776:CDS |
CATCCACATTGTTGATCATA+TGG | 0.387385 | 8.2:-79047101 | MS.gene36776:CDS |
TCAGGTTGCAAGGTGTGAAT+AGG | 0.391944 | 8.2:-79048962 | MS.gene36776:CDS |
GGATCTCGCGTAGGAAATTA+CGG | 0.393856 | 8.2:-79045770 | MS.gene36776:CDS |
AGAATGGGCAGACCATAATA+TGG | 0.399984 | 8.2:-79045840 | MS.gene36776:CDS |
ATGGGTCTGAATCTTTCCTT+TGG | 0.411939 | 8.2:-79046440 | MS.gene36776:CDS |
TCCTAAAAGATCGTCCTTTG+TGG | 0.414014 | 8.2:-79047657 | MS.gene36776:CDS |
CCATCATTTCTTCAGGAGAA+TGG | 0.415643 | 8.2:+79045584 | None:intergenic |
GCATGTGAACTCAGATTAGA+AGG | 0.416254 | 8.2:+79044649 | None:intergenic |
CTAAGTGCCCGCAGAGCTGC+TGG | 0.418507 | 8.2:+79046668 | None:intergenic |
GAATTTCTTTCAAAGGCTAC+TGG | 0.419741 | 8.2:-79048128 | MS.gene36776:CDS |
AACCAAACTTTGATTTGCCT+TGG | 0.419790 | 8.2:+79049723 | None:intergenic |
ATACTAACCGGCTCAATCTC+TGG | 0.425078 | 8.2:+79046645 | None:intergenic |
TTTCTCAAACCAGGCAGGGC+TGG | 0.426900 | 8.2:-79043426 | MS.gene36776:CDS |
ATATAATACTGCGAACATAT+TGG | 0.427160 | 8.2:+79044704 | None:intergenic |
CATTGTTGATCATATGGACT+TGG | 0.428519 | 8.2:-79047095 | MS.gene36776:CDS |
CCAGGCAGGGCTGGACATGC+TGG | 0.429914 | 8.2:-79043417 | MS.gene36776:CDS |
GTTTCTCAGCCCAATGTCAC+TGG | 0.430041 | 8.2:-79046704 | MS.gene36776:CDS |
TTCAGACCCATTAACTTGTC+AGG | 0.430051 | 8.2:+79046452 | None:intergenic |
TCAAGAGCTTCAACCTGCTC+AGG | 0.430316 | 8.2:+79049831 | None:intergenic |
CCAAGGGATGCAAGTCCTGC+AGG | 0.431428 | 8.2:-79048295 | MS.gene36776:CDS |
AGGCACAAACCCTTGCTCAT+TGG | 0.433054 | 8.2:-79044597 | MS.gene36776:CDS |
CTCAATGGATTTACTGATGA+AGG | 0.445576 | 8.2:-79046533 | MS.gene36776:CDS |
TCATCACCTGACAAGTTAAT+GGG | 0.446259 | 8.2:-79046458 | MS.gene36776:CDS |
CATCATTTCTTCAGGAGAAT+GGG | 0.448210 | 8.2:+79045585 | None:intergenic |
AGCAAGAGCTTGTGGTCTAG+TGG | 0.450671 | 8.2:-79047790 | MS.gene36776:CDS |
TGTGGCACAGGAGGCATGCT+TGG | 0.453662 | 8.2:+79047190 | None:intergenic |
TCAGCAAATGAAGCATCAAT+TGG | 0.455580 | 8.2:+79045052 | None:intergenic |
TTCACTTTCTCAAACCAGGC+AGG | 0.455998 | 8.2:-79043431 | MS.gene36776:CDS |
TGCTAAAGTTTCTTCTGCAA+TGG | 0.458146 | 8.2:+79048151 | None:intergenic |
CTTCCCCACCCAGTGACATT+GGG | 0.458697 | 8.2:+79046695 | None:intergenic |
AAGACGACCAGCAGCTCTGC+GGG | 0.458787 | 8.2:-79046675 | MS.gene36776:CDS |
TATTGAGCTGCTTTATATGC+AGG | 0.461758 | 8.2:-79047575 | MS.gene36776:intron |
CTTGCATCTGCCCTTGACAT+TGG | 0.463238 | 8.2:-79044853 | MS.gene36776:CDS |
GAGAAAATATTTGATGATAA+TGG | 0.466405 | 8.2:-79043359 | MS.gene36776:CDS |
CGAAATCCAGAGGGTAGAAG+TGG | 0.468647 | 8.2:+79045022 | None:intergenic |
TCTTCCCCACCCAGTGACAT+TGG | 0.470531 | 8.2:+79046694 | None:intergenic |
CGAGAGAGCTGTTGCTTGGA+AGG | 0.471268 | 8.2:-79043090 | MS.gene36776:CDS |
TGCATTACAAGATATAAGTC+TGG | 0.474357 | 8.2:-79043381 | MS.gene36776:CDS |
CGAGATCCTGTTAAGCTACA+AGG | 0.476441 | 8.2:+79045785 | None:intergenic |
GTCTTCTGAGCCAGCACCAT+CGG | 0.476703 | 8.2:+79046944 | None:intergenic |
TTTAGCAGAATTTCTTTCAA+AGG | 0.476915 | 8.2:-79048135 | MS.gene36776:CDS |
GCTGGCTCAGAAGACTACTA+TGG | 0.477145 | 8.2:-79046936 | MS.gene36776:CDS |
CAGCCCAATGTCACTGGGTG+GGG | 0.478064 | 8.2:-79046698 | MS.gene36776:CDS |
GGTTTCAATGAGGCACTCAA+TGG | 0.478467 | 8.2:-79046548 | MS.gene36776:CDS |
TGTATTATGTTGCACTCTAA+AGG | 0.481143 | 8.2:-79043822 | MS.gene36776:intron |
GCAAGATCAAGAGTGCGATT+AGG | 0.482451 | 8.2:+79044871 | None:intergenic |
TGCAGGACTTGCATCCCTTG+GGG | 0.482836 | 8.2:+79048297 | None:intergenic |
GTTGAGTGGGTCCAAATGCC+TGG | 0.484697 | 8.2:-79048098 | MS.gene36776:CDS |
CTGATATGGACAGCCTGGTC+CGG | 0.485461 | 8.2:-79047859 | MS.gene36776:intron |
GTAGACCTGTTGAATAATCT+GGG | 0.486629 | 8.2:+79043310 | None:intergenic |
TGTTGTCTTCGAATTGAACT+TGG | 0.487679 | 8.2:+79049783 | None:intergenic |
CAGCATTATCACTTGATGCT+CGG | 0.488270 | 8.2:+79044818 | None:intergenic |
ACAGCTGCTGCCATTAAAGT+TGG | 0.491933 | 8.2:-79045809 | MS.gene36776:CDS |
AAATGATAGGTTGCAGAAGC+AGG | 0.492355 | 8.2:-79048904 | MS.gene36776:CDS |
ATTCCAATGGAATCCGGACC+AGG | 0.494411 | 8.2:+79047846 | None:intergenic |
GCTATTTCTCATGGTTGCAC+TGG | 0.496228 | 8.2:-79047819 | MS.gene36776:CDS |
GGTTCAATATTAGAAAGAAT+AGG | 0.496315 | 8.2:+79049744 | None:intergenic |
TTGCAACAGAAACAATTCTC+TGG | 0.496348 | 8.2:+79045561 | None:intergenic |
TCTAATCTGAGTTCACATGC+TGG | 0.496973 | 8.2:-79044646 | MS.gene36776:CDS |
TATGTTCACGCAGGAACCTC+AGG | 0.498436 | 8.2:+79045867 | None:intergenic |
AAAGTGCTAACGCTACCCTT+TGG | 0.500197 | 8.2:+79044674 | None:intergenic |
CATACGAGAGAGCTGTTGCT+TGG | 0.500411 | 8.2:-79043094 | MS.gene36776:CDS |
TTGGTAGCTTTGCAGTGGAA+TGG | 0.501949 | 8.2:-79045116 | MS.gene36776:intron |
TACTGGAACCGCTGTTGAGT+GGG | 0.504776 | 8.2:-79048111 | MS.gene36776:CDS |
TTGATGCTCGGTTTCCAGTA+GGG | 0.507932 | 8.2:+79044830 | None:intergenic |
ATATGAATCACCGATGGTGC+TGG | 0.508312 | 8.2:-79046954 | MS.gene36776:CDS |
TACACTTCTGTTGTAGAAGA+TGG | 0.508557 | 8.2:-79047408 | MS.gene36776:CDS |
ATCAATCACACTCACCCTGC+AGG | 0.508922 | 8.2:+79048280 | None:intergenic |
GGAATCGTCGCTATTTCTCA+TGG | 0.511365 | 8.2:-79047828 | MS.gene36776:CDS |
ATCAAGAGTGCGATTAGGAC+TGG | 0.512797 | 8.2:+79044876 | None:intergenic |
CTAATCTGAGTTCACATGCT+GGG | 0.513411 | 8.2:-79044645 | MS.gene36776:CDS |
CCATTCTCCTGAAGAAATGA+TGG | 0.515783 | 8.2:-79045584 | MS.gene36776:CDS |
GGTCCAAATGCCTGGAATGA+AGG | 0.515906 | 8.2:-79048090 | MS.gene36776:intron |
ACCATCGGTGATTCATATAG+TGG | 0.517896 | 8.2:+79046959 | None:intergenic |
GCGTGAACATAGATCAGAAT+GGG | 0.519247 | 8.2:-79045855 | MS.gene36776:CDS |
CTTGATGCTCGGTTTCCAGT+AGG | 0.520139 | 8.2:+79044829 | None:intergenic |
GCAGAAGCAGGTGTCTCACC+TGG | 0.520783 | 8.2:-79048892 | MS.gene36776:CDS |
TTCCAGTAGGGCCAATGTCA+AGG | 0.524338 | 8.2:+79044842 | None:intergenic |
TGTTGATCATATGGACTTGG+AGG | 0.525009 | 8.2:-79047092 | MS.gene36776:intron |
CAGCCTGGTCCGGATTCCAT+TGG | 0.526878 | 8.2:-79047849 | MS.gene36776:CDS |
ATGATCAACAATGTGGATGA+TGG | 0.527724 | 8.2:+79047105 | None:intergenic |
GCTACTATGGCCTGCAAGGA+TGG | 0.529224 | 8.2:-79049897 | None:intergenic |
TGCTGATGGAGGAAAATGAT+AGG | 0.530081 | 8.2:-79048917 | MS.gene36776:CDS |
GCGACGATTCCAATGGAATC+CGG | 0.530819 | 8.2:+79047840 | None:intergenic |
GCTCAATAGTGTGTGCTAGC+GGG | 0.534034 | 8.2:+79045732 | None:intergenic |
GGAATGGATGAGAATGCTAT+TGG | 0.534330 | 8.2:-79045100 | MS.gene36776:CDS |
GATGCCCCACTTCTACCCTC+TGG | 0.535941 | 8.2:-79045028 | MS.gene36776:CDS |
AGCAGGTTGAAGCTCTTGAA+AGG | 0.536769 | 8.2:-79049827 | MS.gene36776:CDS |
TTGGAAGTTATTAAGTTGGA+CGG | 0.536877 | 8.2:-79045613 | MS.gene36776:CDS |
ACGCAGGAACCTCAGGAGAA+TGG | 0.537875 | 8.2:+79045874 | None:intergenic |
GATCTCGCGTAGGAAATTAC+GGG | 0.538410 | 8.2:-79045769 | MS.gene36776:CDS |
CGAGCATCAAGTGATAATGC+TGG | 0.543560 | 8.2:-79044817 | MS.gene36776:CDS |
GCTCTAACAAAATGTGGCAC+AGG | 0.544412 | 8.2:+79047178 | None:intergenic |
CGAGCAGGTGCCAATGTGGT+TGG | 0.545131 | 8.2:+79047450 | None:intergenic |
TGAGTTCACATGCTGGGCTG+AGG | 0.546668 | 8.2:-79044639 | MS.gene36776:CDS |
TCAGCCCAATGTCACTGGGT+GGG | 0.546882 | 8.2:-79046699 | MS.gene36776:CDS |
CTGTAATAGCATTGATGCCT+TGG | 0.547972 | 8.2:+79046379 | None:intergenic |
AGCAAATATAAGTTCTGCAC+AGG | 0.548261 | 8.2:+79045075 | None:intergenic |
GCAGGACTTGCATCCCTTGG+GGG | 0.548645 | 8.2:+79048298 | None:intergenic |
ACAGCTCTCTCGTATGAGAC+AGG | 0.550158 | 8.2:+79043101 | None:intergenic |
TGGTATTTGTCTCTCAAGCA+TGG | 0.550328 | 8.2:-79043129 | MS.gene36776:CDS |
AACAACCAGAAGTCGCGAGC+AGG | 0.555588 | 8.2:+79047435 | None:intergenic |
AGGAACCTCAGGAGAATGGC+TGG | 0.557188 | 8.2:+79045878 | None:intergenic |
TATTATATCATCAGTCCAAA+GGG | 0.557286 | 8.2:-79044689 | MS.gene36776:CDS |
CTCAGCCCAATGTCACTGGG+TGG | 0.560247 | 8.2:-79046700 | MS.gene36776:CDS |
AAAGAGTCTTTCAGGTTGCA+AGG | 0.562032 | 8.2:-79048972 | MS.gene36776:CDS |
AGTACTTCTGGAACGCTCCA+TGG | 0.562310 | 8.2:+79046986 | None:intergenic |
CTACTTAAATCTAATACTGA+AGG | 0.567758 | 8.2:-79043887 | MS.gene36776:CDS |
CTGATAAGACCTTGTGAAGG+AGG | 0.568786 | 8.2:-79047133 | MS.gene36776:CDS |
TTAGATGTAGAGAGAAGCAG+AGG | 0.568817 | 8.2:-79048995 | MS.gene36776:intron |
TACAGCTACTATGGCCTGCA+AGG | 0.569997 | 8.2:-79049901 | None:intergenic |
TGCTCAATAGTGTGTGCTAG+CGG | 0.571029 | 8.2:+79045731 | None:intergenic |
TGCCTCCAGCCATTCTCCTG+AGG | 0.572080 | 8.2:-79045883 | MS.gene36776:CDS |
GCAAGAGAATGTAGCATGCA+TGG | 0.572833 | 8.2:-79044731 | MS.gene36776:CDS |
TCACTTTCTCAAACCAGGCA+GGG | 0.575818 | 8.2:-79043430 | MS.gene36776:CDS |
GAGCAAGGGTTTGTGCCTCA+GGG | 0.577463 | 8.2:+79044602 | None:intergenic |
TTCTTTCTAATATTGAACCA+AGG | 0.579624 | 8.2:-79049740 | MS.gene36776:CDS |
GCAAGAGCTTGTGGTCTAGT+GGG | 0.580275 | 8.2:-79047789 | MS.gene36776:CDS |
GAGCAGACATGCTGCCTAGT+GGG | 0.581394 | 8.2:-79047159 | MS.gene36776:CDS |
TGTACGTTATACACCTGAGC+AGG | 0.585492 | 8.2:-79049844 | MS.gene36776:CDS |
CTACTGGAACCGCTGTTGAG+TGG | 0.586215 | 8.2:-79048112 | MS.gene36776:CDS |
TAGTGGGACTAGAACCCACT+AGG | 0.586368 | 8.2:-79047773 | MS.gene36776:CDS |
TGATGAAGGATGGACAATGA+TGG | 0.587248 | 8.2:-79046519 | MS.gene36776:CDS |
TTTCTCAGCCCAATGTCACT+GGG | 0.588485 | 8.2:-79046703 | MS.gene36776:CDS |
CATGAATAAGCTGCTGATGG+AGG | 0.588751 | 8.2:-79048928 | MS.gene36776:CDS |
TCCAGTAGGGCCAATGTCAA+GGG | 0.589155 | 8.2:+79044843 | None:intergenic |
GTATTATATCATCAGTCCAA+AGG | 0.589604 | 8.2:-79044690 | MS.gene36776:CDS |
CACTTAGCCAGAGATTGAGC+CGG | 0.590279 | 8.2:-79046652 | MS.gene36776:intron |
TTGTAGATGCTACTTAGGCG+TGG | 0.590476 | 8.2:-79043912 | MS.gene36776:intron |
AGTGTTCACTTTCTCAAACC+AGG | 0.592651 | 8.2:-79043435 | MS.gene36776:CDS |
ATGGATTTACTGATGAAGGA+TGG | 0.595578 | 8.2:-79046529 | MS.gene36776:CDS |
TGTTGCAGATCCAATGAGCA+AGG | 0.597888 | 8.2:+79044587 | None:intergenic |
GCTTTATGCACCAACCACAT+TGG | 0.599013 | 8.2:-79047460 | MS.gene36776:CDS |
AGAAATAGCGACGATTCCAA+TGG | 0.599267 | 8.2:+79047833 | None:intergenic |
GGTATTTGTCTCTCAAGCAT+GGG | 0.600880 | 8.2:-79043128 | MS.gene36776:CDS |
AGCCATGAATAAGCTGCTGA+TGG | 0.601468 | 8.2:-79048931 | MS.gene36776:CDS |
ATAAGACCTTGTGAAGGAGG+TGG | 0.601925 | 8.2:-79047130 | MS.gene36776:CDS |
TCTTTGCAGGGGTTTCAATG+AGG | 0.604942 | 8.2:-79046558 | MS.gene36776:intron |
AATAGTTCCACCGCTAGCAG+TGG | 0.607297 | 8.2:+79047594 | None:intergenic |
TCTGGACCACTTACCCTAGT+GGG | 0.608488 | 8.2:+79047759 | None:intergenic |
CAAGGGATGCAAGTCCTGCA+GGG | 0.611498 | 8.2:-79048294 | MS.gene36776:intron |
AACACAGCATTACTGACAGA+AGG | 0.611683 | 8.2:+79046407 | None:intergenic |
CTAACAAAATGTGGCACAGG+AGG | 0.612984 | 8.2:+79047181 | None:intergenic |
AATGTGCTGCCCACTGCTAG+CGG | 0.616645 | 8.2:-79047604 | MS.gene36776:CDS |
ATGTCTGCTCTAACAAAATG+TGG | 0.616648 | 8.2:+79047172 | None:intergenic |
GGTGTCGCAGCAAGAGCTTG+TGG | 0.617510 | 8.2:-79047798 | MS.gene36776:CDS |
GATGAAGGATGGACAATGAT+GGG | 0.617941 | 8.2:-79046518 | MS.gene36776:CDS |
ATAGTTCCACCGCTAGCAGT+GGG | 0.625406 | 8.2:+79047595 | None:intergenic |
GAAATCCAGAGGGTAGAAGT+GGG | 0.626534 | 8.2:+79045023 | None:intergenic |
AGAAGGAAATCCATTGCCAA+AGG | 0.629899 | 8.2:+79046424 | None:intergenic |
GGTCTTATCAGGTACCCACT+AGG | 0.630106 | 8.2:+79047145 | None:intergenic |
GTGCTGCCCACTGCTAGCGG+TGG | 0.632331 | 8.2:-79047601 | MS.gene36776:CDS |
TGCGTGAACATAGATCAGAA+TGG | 0.632509 | 8.2:-79045856 | MS.gene36776:CDS |
AGCATCAGAGTGGTGCCACA+AGG | 0.633858 | 8.2:+79043844 | None:intergenic |
GTTGCAGATCCAATGAGCAA+GGG | 0.634819 | 8.2:+79044588 | None:intergenic |
AGACACGAGTTGTGAGTCAG+TGG | 0.635890 | 8.2:-79048356 | MS.gene36776:CDS |
AGCACACACTATTGAGCATG+AGG | 0.637565 | 8.2:-79045726 | MS.gene36776:CDS |
ATCTGGACCACTTACCCTAG+TGG | 0.637854 | 8.2:+79047758 | None:intergenic |
GCTGGGCTGAGGTCACCGCT+AGG | 0.643168 | 8.2:-79044628 | MS.gene36776:CDS |
AGAGCAGACATGCTGCCTAG+TGG | 0.643425 | 8.2:-79047160 | MS.gene36776:CDS |
TGGACAATGATGGGCAATGA+CGG | 0.644598 | 8.2:-79046509 | MS.gene36776:CDS |
GAAGACGACCAGCAGCTCTG+CGG | 0.647462 | 8.2:-79046676 | MS.gene36776:CDS |
CATTGACAATATCAACAGCT+CGG | 0.648913 | 8.2:+79047623 | None:intergenic |
GTCGCGAGCAGGTGCCAATG+TGG | 0.649892 | 8.2:+79047446 | None:intergenic |
TAATGCTGTGTTATGTGCCA+AGG | 0.650005 | 8.2:-79046396 | MS.gene36776:CDS |
TAGACCTGTTGAATAATCTG+GGG | 0.651755 | 8.2:+79043311 | None:intergenic |
ATGGAACCACCTCCTTCACA+AGG | 0.652482 | 8.2:+79047124 | None:intergenic |
AATCTGTACTCAAGTCCTTG+TGG | 0.653586 | 8.2:-79043859 | MS.gene36776:CDS |
GAGATCCTGTTAAGCTACAA+GGG | 0.654440 | 8.2:+79045786 | None:intergenic |
AGCAAGGGTTTGTGCCTCAG+GGG | 0.654661 | 8.2:+79044603 | None:intergenic |
TCCACTATATGAATCACCGA+TGG | 0.655585 | 8.2:-79046960 | MS.gene36776:CDS |
AGCTTAACAGGATCTCGCGT+AGG | 0.658137 | 8.2:-79045779 | MS.gene36776:CDS |
TGTGAGTCAGTGGTGACTAG+TGG | 0.658501 | 8.2:-79048346 | MS.gene36776:CDS |
CCGAACATAATGTCAAACAA+AGG | 0.672666 | 8.2:+79043013 | None:intergenic |
AGGGATGATACGAAATCCAG+AGG | 0.676709 | 8.2:+79045012 | None:intergenic |
GTGTGCCTTAGATCTGTGAG+AGG | 0.677270 | 8.2:-79047237 | MS.gene36776:intron |
ATCTCGCGTAGGAAATTACG+GGG | 0.678836 | 8.2:-79045768 | MS.gene36776:CDS |
GGCTCAGAAGACTACTATGG+CGG | 0.682781 | 8.2:-79046933 | MS.gene36776:intron |
TACCTGATAAGACCTTGTGA+AGG | 0.684274 | 8.2:-79047136 | MS.gene36776:CDS |
TGTAGAAGATGGCAGCCTAG+TGG | 0.684422 | 8.2:-79047397 | MS.gene36776:intron |
GGGATGATACGAAATCCAGA+GGG | 0.685666 | 8.2:+79045013 | None:intergenic |
AGTCCATATGATCAACAATG+TGG | 0.687782 | 8.2:+79047098 | None:intergenic |
CGGCAATCACGAAACCACAA+AGG | 0.688045 | 8.2:+79047643 | None:intergenic |
AAATCCAGAGGGTAGAAGTG+GGG | 0.695513 | 8.2:+79045024 | None:intergenic |
AGTGGGACTAGAACCCACTA+GGG | 0.698187 | 8.2:-79047772 | MS.gene36776:intron |
ATTCTGATCTATGTTCACGC+AGG | 0.699759 | 8.2:+79045858 | None:intergenic |
AACCTCAGGAGAATGGCTGG+AGG | 0.701734 | 8.2:+79045881 | None:intergenic |
ACACACTATTGAGCATGAGG+AGG | 0.703064 | 8.2:-79045723 | MS.gene36776:intron |
AGACCTGTTGAATAATCTGG+GGG | 0.704064 | 8.2:+79043312 | None:intergenic |
AACATAATACAGCATCAGAG+TGG | 0.704741 | 8.2:+79043834 | None:intergenic |
TGTGCCTCAGGGGTACCTAG+CGG | 0.706731 | 8.2:+79044613 | None:intergenic |
CATTTGGACCCACTCAACAG+CGG | 0.709948 | 8.2:+79048103 | None:intergenic |
TGGTTTGAGAAAGTGAACAC+TGG | 0.711249 | 8.2:+79043437 | None:intergenic |
GTCACCGCTAGGTACCCCTG+AGG | 0.759127 | 8.2:-79044617 | MS.gene36776:CDS |
TCTCGCGTAGGAAATTACGG+GGG | 0.824268 | 8.2:-79045767 | MS.gene36776:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 79043025 | 79049913 | 79043025 | ID=MS.gene36776 |
chr8.2 | mRNA | 79043025 | 79049913 | 79043025 | ID=MS.gene36776.t1;Parent=MS.gene36776 |
chr8.2 | exon | 79049711 | 79049913 | 79049711 | ID=MS.gene36776.t1.exon1;Parent=MS.gene36776.t1 |
chr8.2 | CDS | 79049711 | 79049913 | 79049711 | ID=cds.MS.gene36776.t1;Parent=MS.gene36776.t1 |
chr8.2 | exon | 79048854 | 79049013 | 79048854 | ID=MS.gene36776.t1.exon2;Parent=MS.gene36776.t1 |
chr8.2 | CDS | 79048854 | 79049013 | 79048854 | ID=cds.MS.gene36776.t1;Parent=MS.gene36776.t1 |
chr8.2 | exon | 79048295 | 79048386 | 79048295 | ID=MS.gene36776.t1.exon3;Parent=MS.gene36776.t1 |
chr8.2 | CDS | 79048295 | 79048386 | 79048295 | ID=cds.MS.gene36776.t1;Parent=MS.gene36776.t1 |
chr8.2 | exon | 79048091 | 79048181 | 79048091 | ID=MS.gene36776.t1.exon4;Parent=MS.gene36776.t1 |
chr8.2 | CDS | 79048091 | 79048181 | 79048091 | ID=cds.MS.gene36776.t1;Parent=MS.gene36776.t1 |
chr8.2 | exon | 79047773 | 79047868 | 79047773 | ID=MS.gene36776.t1.exon5;Parent=MS.gene36776.t1 |
chr8.2 | CDS | 79047773 | 79047868 | 79047773 | ID=cds.MS.gene36776.t1;Parent=MS.gene36776.t1 |
chr8.2 | exon | 79047576 | 79047689 | 79047576 | ID=MS.gene36776.t1.exon6;Parent=MS.gene36776.t1 |
chr8.2 | CDS | 79047576 | 79047689 | 79047576 | ID=cds.MS.gene36776.t1;Parent=MS.gene36776.t1 |
chr8.2 | exon | 79047398 | 79047481 | 79047398 | ID=MS.gene36776.t1.exon7;Parent=MS.gene36776.t1 |
chr8.2 | CDS | 79047398 | 79047481 | 79047398 | ID=cds.MS.gene36776.t1;Parent=MS.gene36776.t1 |
chr8.2 | exon | 79047093 | 79047248 | 79047093 | ID=MS.gene36776.t1.exon8;Parent=MS.gene36776.t1 |
chr8.2 | CDS | 79047093 | 79047248 | 79047093 | ID=cds.MS.gene36776.t1;Parent=MS.gene36776.t1 |
chr8.2 | exon | 79046934 | 79047008 | 79046934 | ID=MS.gene36776.t1.exon9;Parent=MS.gene36776.t1 |
chr8.2 | CDS | 79046934 | 79047008 | 79046934 | ID=cds.MS.gene36776.t1;Parent=MS.gene36776.t1 |
chr8.2 | exon | 79046653 | 79046759 | 79046653 | ID=MS.gene36776.t1.exon10;Parent=MS.gene36776.t1 |
chr8.2 | CDS | 79046653 | 79046759 | 79046653 | ID=cds.MS.gene36776.t1;Parent=MS.gene36776.t1 |
chr8.2 | exon | 79046379 | 79046571 | 79046379 | ID=MS.gene36776.t1.exon11;Parent=MS.gene36776.t1 |
chr8.2 | CDS | 79046379 | 79046571 | 79046379 | ID=cds.MS.gene36776.t1;Parent=MS.gene36776.t1 |
chr8.2 | exon | 79045724 | 79045909 | 79045724 | ID=MS.gene36776.t1.exon12;Parent=MS.gene36776.t1 |
chr8.2 | CDS | 79045724 | 79045909 | 79045724 | ID=cds.MS.gene36776.t1;Parent=MS.gene36776.t1 |
chr8.2 | exon | 79045561 | 79045638 | 79045561 | ID=MS.gene36776.t1.exon13;Parent=MS.gene36776.t1 |
chr8.2 | CDS | 79045561 | 79045638 | 79045561 | ID=cds.MS.gene36776.t1;Parent=MS.gene36776.t1 |
chr8.2 | exon | 79044997 | 79045131 | 79044997 | ID=MS.gene36776.t1.exon14;Parent=MS.gene36776.t1 |
chr8.2 | CDS | 79044997 | 79045131 | 79044997 | ID=cds.MS.gene36776.t1;Parent=MS.gene36776.t1 |
chr8.2 | exon | 79044580 | 79044905 | 79044580 | ID=MS.gene36776.t1.exon15;Parent=MS.gene36776.t1 |
chr8.2 | CDS | 79044580 | 79044905 | 79044580 | ID=cds.MS.gene36776.t1;Parent=MS.gene36776.t1 |
chr8.2 | exon | 79043823 | 79043928 | 79043823 | ID=MS.gene36776.t1.exon16;Parent=MS.gene36776.t1 |
chr8.2 | CDS | 79043823 | 79043928 | 79043823 | ID=cds.MS.gene36776.t1;Parent=MS.gene36776.t1 |
chr8.2 | exon | 79043316 | 79043465 | 79043316 | ID=MS.gene36776.t1.exon17;Parent=MS.gene36776.t1 |
chr8.2 | CDS | 79043316 | 79043465 | 79043316 | ID=cds.MS.gene36776.t1;Parent=MS.gene36776.t1 |
chr8.2 | exon | 79043025 | 79043171 | 79043025 | ID=MS.gene36776.t1.exon18;Parent=MS.gene36776.t1 |
chr8.2 | CDS | 79043025 | 79043171 | 79043025 | ID=cds.MS.gene36776.t1;Parent=MS.gene36776.t1 |
Gene Sequence |
Protein sequence |