Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37005.t1 | XP_013444296.1 | 96.2 | 448 | 16 | 1 | 1 | 447 | 1 | 448 | 2.20E-253 | 884.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37005.t1 | Q8VYU3 | 61.0 | 462 | 163 | 8 | 1 | 454 | 1 | 453 | 6.4e-156 | 552.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37005.t1 | A0A072TNB0 | 96.2 | 448 | 16 | 1 | 1 | 447 | 1 | 448 | 1.6e-253 | 884.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052710 | MS.gene37005 | 0.80876 | 2.64E-50 | -1.69E-46 |
| MS.gene055251 | MS.gene37005 | 0.836581 | 8.60E-57 | -1.69E-46 |
| MS.gene060076 | MS.gene37005 | 0.822056 | 2.90E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37005.t1 | MTR_8g016030 | 96.205 | 448 | 16 | 1 | 1 | 447 | 1 | 448 | 0.0 | 894 |
| MS.gene37005.t1 | MTR_8g012570 | 70.236 | 467 | 127 | 5 | 1 | 457 | 1 | 465 | 0.0 | 645 |
| MS.gene37005.t1 | MTR_7g055700 | 68.251 | 463 | 128 | 6 | 1 | 454 | 1 | 453 | 0.0 | 630 |
| MS.gene37005.t1 | MTR_7g055700 | 68.986 | 345 | 96 | 4 | 119 | 454 | 1 | 343 | 5.18e-172 | 486 |
| MS.gene37005.t1 | MTR_7g060730 | 72.289 | 83 | 22 | 1 | 70 | 152 | 27 | 108 | 1.96e-38 | 135 |
| MS.gene37005.t1 | MTR_7g060740 | 49.153 | 118 | 40 | 4 | 193 | 310 | 14 | 111 | 2.81e-24 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37005.t1 | AT3G07270 | 57.602 | 467 | 183 | 8 | 1 | 458 | 1 | 461 | 0.0 | 517 |
| MS.gene37005.t1 | AT3G07270 | 59.326 | 445 | 168 | 7 | 21 | 458 | 23 | 461 | 0.0 | 517 |
Find 90 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTACTGATTGCTTTAATTT+TGG | 0.144486 | 8.2:-77089616 | None:intergenic |
| TATATGAACAACACCATAAA+AGG | 0.177080 | 8.2:-77089886 | None:intergenic |
| AATGACAAAGTTCGTCTTAA+AGG | 0.202003 | 8.2:+77089546 | MS.gene37005:CDS |
| TCTTCAATTGTTAAATCTTT+AGG | 0.230854 | 8.2:+77089660 | MS.gene37005:CDS |
| TCTGCTTTGTAAGCCTTTCT+TGG | 0.234131 | 8.2:-77089995 | None:intergenic |
| GGCCTAAATAATAATAAAAT+TGG | 0.265269 | 8.2:+77089108 | MS.gene37005:CDS |
| CAAAGATCTGTTACTAGGTT+TGG | 0.272301 | 8.2:+77087267 | MS.gene37005:CDS |
| ATGAACTATTGATTGTAAAA+TGG | 0.296775 | 8.2:-77089949 | None:intergenic |
| AAAGATCTGTTACTAGGTTT+GGG | 0.298638 | 8.2:+77087268 | MS.gene37005:CDS |
| GTTAAGTTACTTGTTTCTTC+AGG | 0.301438 | 8.2:+77089447 | MS.gene37005:CDS |
| TTTAGTCTTCTTAAGTTTAG+AGG | 0.309476 | 8.2:+77089516 | MS.gene37005:CDS |
| AGCAATCAGTACTTCTATTA+TGG | 0.318044 | 8.2:+77089626 | MS.gene37005:CDS |
| TTATTATTTAGGCCATCTTC+AGG | 0.323009 | 8.2:-77089099 | None:intergenic |
| TCTACAAGCTCTTTCCTTGT+TGG | 0.323847 | 8.2:-77089690 | None:intergenic |
| ACCGCAACCATTGCCGTATT+AGG | 0.326394 | 8.2:+77090122 | MS.gene37005:CDS |
| TGCTTAAGCCTACCACTCTT+TGG | 0.341064 | 8.2:-77089248 | None:intergenic |
| CATGTTGGTTATATCCCTTC+AGG | 0.349179 | 8.2:+77089225 | MS.gene37005:CDS |
| GATATCGACTCAAACGATAT+AGG | 0.353026 | 8.2:+77089420 | MS.gene37005:CDS |
| TTACTTGTTTCTTCAGGATC+TGG | 0.355301 | 8.2:+77089453 | MS.gene37005:CDS |
| TGTAAAATGGACTTTCCAAT+TGG | 0.369408 | 8.2:-77089936 | None:intergenic |
| ACATGACACTTGACTTGAAA+TGG | 0.378614 | 8.2:-77089207 | None:intergenic |
| AGTATGATAGCAACTCCTTC+TGG | 0.380673 | 8.2:-77089366 | None:intergenic |
| TGCTCACATTGTGACCAAAA+AGG | 0.383650 | 8.2:-77089852 | None:intergenic |
| ATAGGATACTTTCTTTCTAA+AGG | 0.384378 | 8.2:+77089906 | MS.gene37005:CDS |
| TCGATATCTTTGTATGGAAA+AGG | 0.388798 | 8.2:-77089405 | None:intergenic |
| TCCACCTACCAATGGTGAAA+TGG | 0.397277 | 8.2:-77090027 | None:intergenic |
| CCAAGTGCTACATCTCTTGA+AGG | 0.424595 | 8.2:+77090194 | MS.gene37005:CDS |
| ATATCGACTCAAACGATATA+GGG | 0.424779 | 8.2:+77089421 | MS.gene37005:CDS |
| TTTGAGTCGATATCTTTGTA+TGG | 0.426394 | 8.2:-77089411 | None:intergenic |
| TCTAAAGGATGCTATCCAAT+TGG | 0.437570 | 8.2:+77089921 | MS.gene37005:CDS |
| AATAAAATTGGTCATGGTGG+TGG | 0.440425 | 8.2:+77089120 | MS.gene37005:CDS |
| TCAAACTTCAAGTCCAAGAA+AGG | 0.442950 | 8.2:+77089982 | MS.gene37005:CDS |
| TTTCAGTTAATGGGGTCGTT+TGG | 0.445001 | 8.2:+77087148 | None:intergenic |
| AAGGCCTTTGCAACACGAAA+TGG | 0.450325 | 8.2:-77087325 | None:intergenic |
| TCCTAATACGGCAATGGTTG+CGG | 0.451246 | 8.2:-77090123 | None:intergenic |
| ACCTCTGGTTCCTTCAGAAA+AGG | 0.470637 | 8.2:-77087344 | None:intergenic |
| AGTTGAAAAGTGTCCTAATA+CGG | 0.473329 | 8.2:-77090135 | None:intergenic |
| GTCACACTTGTATGATCTCT+AGG | 0.476571 | 8.2:+77090075 | MS.gene37005:CDS |
| ATCTTTGACTGCACACTCAA+TGG | 0.481435 | 8.2:-77087251 | None:intergenic |
| ATTGGTCATGGTGGTGGAGT+AGG | 0.493372 | 8.2:+77089126 | MS.gene37005:CDS |
| TGTGTTCAGCTTTGCATCAA+GGG | 0.508751 | 8.2:+77089337 | MS.gene37005:CDS |
| CGATATCTTTGTATGGAAAA+GGG | 0.509754 | 8.2:-77089404 | None:intergenic |
| TGCAGAAACCATTTCACCAT+TGG | 0.513288 | 8.2:+77090019 | MS.gene37005:CDS |
| ATGTGTTCAGCTTTGCATCA+AGG | 0.516850 | 8.2:+77089336 | MS.gene37005:CDS |
| CTAATACCAATGGAGAGGTA+AGG | 0.520921 | 8.2:+77089793 | MS.gene37005:CDS |
| CTACCACTCTTTGGCCTGAA+GGG | 0.523240 | 8.2:-77089239 | None:intergenic |
| CCTACCACTCTTTGGCCTGA+AGG | 0.523497 | 8.2:-77089240 | None:intergenic |
| CCTTCAAGAGATGTAGCACT+TGG | 0.525506 | 8.2:-77090194 | None:intergenic |
| AACATTGATATAGAGATGAA+TGG | 0.535613 | 8.2:+77089762 | MS.gene37005:CDS |
| TATTATTTAGGCCATCTTCA+GGG | 0.537173 | 8.2:-77089098 | None:intergenic |
| ATCAAACCTTACCTCTCCAT+TGG | 0.540240 | 8.2:-77089799 | None:intergenic |
| TCACACTTGTATGATCTCTA+GGG | 0.541059 | 8.2:+77090076 | MS.gene37005:CDS |
| GACACCATTTCGTGTTGCAA+AGG | 0.541589 | 8.2:+77087321 | MS.gene37005:CDS |
| AATAATAATAAAATTGGTCA+TGG | 0.542699 | 8.2:+77089114 | MS.gene37005:CDS |
| ATATGAACAACACCATAAAA+GGG | 0.543872 | 8.2:-77089885 | None:intergenic |
| AATAATAAAATTGGTCATGG+TGG | 0.544701 | 8.2:+77089117 | MS.gene37005:CDS |
| GGTTACATTTCTAATACCAA+TGG | 0.551456 | 8.2:+77089783 | MS.gene37005:CDS |
| GCAGTCAAAGATCTGTTACT+AGG | 0.561012 | 8.2:+77087262 | MS.gene37005:CDS |
| GGTGCATTATTCCCTGAAGA+TGG | 0.565188 | 8.2:+77089087 | MS.gene37005:CDS |
| CTTAAGCAAGCTTCCTCGTG+TGG | 0.570483 | 8.2:+77089263 | MS.gene37005:CDS |
| CCTTCAGGCCAAAGAGTGGT+AGG | 0.576895 | 8.2:+77089240 | MS.gene37005:CDS |
| TTTCAAGTCAAGTGTCATGT+TGG | 0.580286 | 8.2:+77089210 | MS.gene37005:CDS |
| GGGGAAGATATTAATAGGGA+AGG | 0.581098 | 8.2:+77087289 | MS.gene37005:CDS |
| AAGATCTGTTACTAGGTTTG+GGG | 0.583510 | 8.2:+77087269 | MS.gene37005:CDS |
| ACCATTTCACCATTGGTAGG+TGG | 0.594194 | 8.2:+77090026 | MS.gene37005:CDS |
| GGTCATGGTGGTGGAGTAGG+TGG | 0.598165 | 8.2:+77089129 | MS.gene37005:CDS |
| GAAACCATTTCACCATTGGT+AGG | 0.598373 | 8.2:+77090023 | MS.gene37005:CDS |
| AAGGACCACTAGATCAATGT+TGG | 0.603976 | 8.2:+77089565 | MS.gene37005:CDS |
| AATGTGAAGGACATTGTTGA+AGG | 0.604917 | 8.2:+77089066 | MS.gene37005:CDS |
| GGACACCAACATTGATCTAG+TGG | 0.609250 | 8.2:-77089570 | None:intergenic |
| GAAACTTCAGCATATAGAGA+AGG | 0.616046 | 8.2:-77089591 | None:intergenic |
| AAGACTCACAATAAGAGTAG+AGG | 0.617418 | 8.2:-77089176 | None:intergenic |
| TCGACTCAAACGATATAGGG+TGG | 0.618583 | 8.2:+77089424 | MS.gene37005:CDS |
| CGACTCAAACGATATAGGGT+GGG | 0.620043 | 8.2:+77089425 | MS.gene37005:CDS |
| TTTCAACTAATCTTGCTGCA+AGG | 0.621567 | 8.2:+77090150 | MS.gene37005:CDS |
| AAAGTGTCCTAATACGGCAA+TGG | 0.624670 | 8.2:-77090129 | None:intergenic |
| CAAGTGCTACATCTCTTGAA+GGG | 0.625994 | 8.2:+77090195 | MS.gene37005:CDS |
| TCAAATGCATTCAAATTGTG+AGG | 0.628000 | 8.2:+77087171 | MS.gene37005:CDS |
| AAGCAAGCTTCCTCGTGTGG+CGG | 0.628840 | 8.2:+77089266 | MS.gene37005:CDS |
| AGATCTGTTACTAGGTTTGG+GGG | 0.630337 | 8.2:+77087270 | MS.gene37005:CDS |
| CTTTAGGAGAAGATCCAACA+AGG | 0.631850 | 8.2:+77089676 | MS.gene37005:CDS |
| AAATGTGATTGTAGTTGTTG+AGG | 0.632370 | 8.2:+77090049 | MS.gene37005:CDS |
| CACACTTGTATGATCTCTAG+GGG | 0.636802 | 8.2:+77090077 | MS.gene37005:CDS |
| AGGTTATAGGCAAAATGTGA+AGG | 0.638395 | 8.2:+77089053 | MS.gene37005:intron |
| ATCACATTTCCACCTACCAA+TGG | 0.639419 | 8.2:-77090035 | None:intergenic |
| GCAAATGCTTCCGCCACACG+AGG | 0.643408 | 8.2:-77089276 | None:intergenic |
| CATTTCTAATACCAATGGAG+AGG | 0.648093 | 8.2:+77089788 | MS.gene37005:CDS |
| TATCCCTTCAGGCCAAAGAG+TGG | 0.666606 | 8.2:+77089236 | MS.gene37005:CDS |
| CATCAAGGGATACAACCAGA+AGG | 0.683587 | 8.2:+77089351 | MS.gene37005:CDS |
| ATCTCATCTGCTAAACGCTG+AGG | 0.692989 | 8.2:-77089315 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAATCAATTTCTTTA+TGG | - | chr8.2:77087810-77087829 | None:intergenic | 10.0% |
| !! | AAATTAATCAATTTCTTTAT+GGG | - | chr8.2:77087809-77087828 | None:intergenic | 10.0% |
| !!! | AAAATAAAAACTTTTTTCTT+TGG | + | chr8.2:77088290-77088309 | MS.gene37005:intron | 10.0% |
| !! | AATAATAATAAAATTGGTCA+TGG | + | chr8.2:77089114-77089133 | MS.gene37005:CDS | 15.0% |
| !! | AATTAATCAATTTCTTTATG+GGG | - | chr8.2:77087808-77087827 | None:intergenic | 15.0% |
| !! | ATTTGGTTAAATAACATTTA+AGG | + | chr8.2:77088325-77088344 | MS.gene37005:intron | 15.0% |
| !! | TAATTTCTTCAAAACATTTA+AGG | + | chr8.2:77088351-77088370 | MS.gene37005:intron | 15.0% |
| !! | TGATATAACAAACAAAATTT+AGG | + | chr8.2:77087761-77087780 | MS.gene37005:intron | 15.0% |
| !! | TTTAATTAGATTTGTACTTA+AGG | + | chr8.2:77089011-77089030 | MS.gene37005:intron | 15.0% |
| !!! | AAAAAAAAAAAAGTACACTA+AGG | - | chr8.2:77087548-77087567 | None:intergenic | 15.0% |
| !!! | AACAAAATTTAGGATATTAT+TGG | + | chr8.2:77087771-77087790 | MS.gene37005:intron | 15.0% |
| !!! | GACCAATTTTATTATTATTT+AGG | - | chr8.2:77089113-77089132 | None:intergenic | 15.0% |
| !!! | GTACAAACATTTTTTTAAAA+AGG | + | chr8.2:77088601-77088620 | MS.gene37005:intron | 15.0% |
| !!! | TAAATGTTATTTAACCAAAT+AGG | - | chr8.2:77088325-77088344 | None:intergenic | 15.0% |
| !!! | TTTTAAAAAATCTTTCTTGA+AGG | + | chr8.2:77088162-77088181 | MS.gene37005:intron | 15.0% |
| !! | AAAAAAACATAGTTTCTTTG+TGG | - | chr8.2:77088992-77089011 | None:intergenic | 20.0% |
| !! | AACATCACATTATATATGTA+AGG | + | chr8.2:77087906-77087925 | MS.gene37005:intron | 20.0% |
| !! | ACATCACATTATATATGTAA+GGG | + | chr8.2:77087907-77087926 | MS.gene37005:intron | 20.0% |
| !! | ATGGACAAAAAAATATTGTA+GGG | + | chr8.2:77088742-77088761 | MS.gene37005:intron | 20.0% |
| !! | GGCCTAAATAATAATAAAAT+TGG | + | chr8.2:77089108-77089127 | MS.gene37005:CDS | 20.0% |
| !! | TAATAGTTAGAAAAACATTG+TGG | + | chr8.2:77088000-77088019 | MS.gene37005:intron | 20.0% |
| !! | TATGGACAAAAAAATATTGT+AGG | + | chr8.2:77088741-77088760 | MS.gene37005:intron | 20.0% |
| !! | TCTTCAATTGTTAAATCTTT+AGG | + | chr8.2:77089660-77089679 | MS.gene37005:CDS | 20.0% |
| !!! | AAATAGCATTTTTGTTCAAA+AGG | + | chr8.2:77088955-77088974 | MS.gene37005:intron | 20.0% |
| !!! | ATGAACTATTGATTGTAAAA+TGG | - | chr8.2:77089952-77089971 | None:intergenic | 20.0% |
| !!! | ATGTTTTTCTAACTATTACT+TGG | - | chr8.2:77087998-77088017 | None:intergenic | 20.0% |
| !!! | CAATCAATAGTTCATTTTTA+TGG | + | chr8.2:77089957-77089976 | MS.gene37005:CDS | 20.0% |
| !!! | GTGATTTTTCTAAAAAATGA+CGG | - | chr8.2:77088126-77088145 | None:intergenic | 20.0% |
| !!! | TATTTTTTAGAAATATGAGG+TGG | - | chr8.2:77088896-77088915 | None:intergenic | 20.0% |
| !!! | TGGTATTTTTTAGAAATATG+AGG | - | chr8.2:77088899-77088918 | None:intergenic | 20.0% |
| !!! | TTGTAACACATTTTAAGATA+TGG | + | chr8.2:77088769-77088788 | MS.gene37005:intron | 20.0% |
| ! | AACATTGATATAGAGATGAA+TGG | + | chr8.2:77089762-77089781 | MS.gene37005:CDS | 25.0% |
| ! | AACCATTTCAAAAATCTAGT+AGG | - | chr8.2:77089720-77089739 | None:intergenic | 25.0% |
| ! | AATAATAAAATTGGTCATGG+TGG | + | chr8.2:77089117-77089136 | MS.gene37005:CDS | 25.0% |
| ! | AGAACAAAAATGCTGAAATA+TGG | + | chr8.2:77089484-77089503 | MS.gene37005:CDS | 25.0% |
| ! | AGATACGATAAAGTCAATAA+AGG | + | chr8.2:77088521-77088540 | MS.gene37005:intron | 25.0% |
| ! | ATAGGATACTTTCTTTCTAA+AGG | + | chr8.2:77089906-77089925 | MS.gene37005:CDS | 25.0% |
| ! | ATATGAACAACACCATAAAA+GGG | - | chr8.2:77089888-77089907 | None:intergenic | 25.0% |
| ! | CATAATATGCATAACAACAT+GGG | + | chr8.2:77088434-77088453 | MS.gene37005:intron | 25.0% |
| ! | GCATTCTTCATAAATAAAAG+TGG | - | chr8.2:77087385-77087404 | None:intergenic | 25.0% |
| ! | TAAAACTCGACAATTATCTT+AGG | + | chr8.2:77088836-77088855 | MS.gene37005:intron | 25.0% |
| ! | TATATGAACAACACCATAAA+AGG | - | chr8.2:77089889-77089908 | None:intergenic | 25.0% |
| ! | TGTACCTGAATCATATATTA+TGG | + | chr8.2:77088723-77088742 | MS.gene37005:intron | 25.0% |
| ! | TGTCCTAATGATATTGTTTA+CGG | + | chr8.2:77087412-77087431 | MS.gene37005:intron | 25.0% |
| ! | TTGTCCATAATATATGATTC+AGG | - | chr8.2:77088730-77088749 | None:intergenic | 25.0% |
| ! | TTTAAAAAGGTCCTATACAA+AGG | + | chr8.2:77088614-77088633 | MS.gene37005:intron | 25.0% |
| !! | AGTTCATACAAACTATTTTC+TGG | + | chr8.2:77088057-77088076 | MS.gene37005:intron | 25.0% |
| !! | ATTTCTAAAAAATACCACAG+CGG | + | chr8.2:77088902-77088921 | MS.gene37005:intron | 25.0% |
| !! | GATATTAAACTTTTATCTGC+AGG | + | chr8.2:77089033-77089052 | MS.gene37005:intron | 25.0% |
| !! | TGTTTTCGACTTATATTTTC+AGG | + | chr8.2:77087487-77087506 | MS.gene37005:intron | 25.0% |
| !! | TTTAGTCTTCTTAAGTTTAG+AGG | + | chr8.2:77089516-77089535 | MS.gene37005:CDS | 25.0% |
| !!! | AGTACTGATTGCTTTAATTT+TGG | - | chr8.2:77089619-77089638 | None:intergenic | 25.0% |
| !!! | ATACAAACTATTTTCTGGTT+GGG | + | chr8.2:77088062-77088081 | MS.gene37005:intron | 25.0% |
| !!! | GTTACTATGTAATTTTAGTG+AGG | + | chr8.2:77087618-77087637 | MS.gene37005:intron | 25.0% |
| !!! | TTTGGAAACTTTTTCCTATT+TGG | + | chr8.2:77088308-77088327 | MS.gene37005:intron | 25.0% |
| !!! | TTTTATGGTGTTGTTCATAT+AGG | + | chr8.2:77089888-77089907 | MS.gene37005:CDS | 25.0% |
| AAAACATAAGACATGAACGA+AGG | - | chr8.2:77087703-77087722 | None:intergenic | 30.0% | |
| AAAGATCTGTTACTAGGTTT+GGG | + | chr8.2:77087268-77087287 | MS.gene37005:CDS | 30.0% | |
| AAATGTGATTGTAGTTGTTG+AGG | + | chr8.2:77090049-77090068 | MS.gene37005:CDS | 30.0% | |
| AATGACAAAGTTCGTCTTAA+AGG | + | chr8.2:77089546-77089565 | MS.gene37005:CDS | 30.0% | |
| ACATTATATATGTAAGGGTC+GGG | + | chr8.2:77087912-77087931 | MS.gene37005:intron | 30.0% | |
| AGCAATCAGTACTTCTATTA+TGG | + | chr8.2:77089626-77089645 | MS.gene37005:CDS | 30.0% | |
| CACATTATATATGTAAGGGT+CGG | + | chr8.2:77087911-77087930 | MS.gene37005:intron | 30.0% | |
| CCATAATATGCATAACAACA+TGG | + | chr8.2:77088433-77088452 | MS.gene37005:intron | 30.0% | |
| CCATGTTGTTATGCATATTA+TGG | - | chr8.2:77088436-77088455 | None:intergenic | 30.0% | |
| CGACAATTATCTTAGGTTAT+GGG | + | chr8.2:77088843-77088862 | MS.gene37005:intron | 30.0% | |
| CGATATCTTTGTATGGAAAA+GGG | - | chr8.2:77089407-77089426 | None:intergenic | 30.0% | |
| GACAATTATCTTAGGTTATG+GGG | + | chr8.2:77088844-77088863 | MS.gene37005:intron | 30.0% | |
| GAGGTTTGAATAATAAGAAG+CGG | + | chr8.2:77087637-77087656 | MS.gene37005:intron | 30.0% | |
| GATCCGTAAACAATATCATT+AGG | - | chr8.2:77087418-77087437 | None:intergenic | 30.0% | |
| GGTTACATTTCTAATACCAA+TGG | + | chr8.2:77089783-77089802 | MS.gene37005:CDS | 30.0% | |
| GTTTATGAACTTCACCTTTA+AGG | - | chr8.2:77087968-77087987 | None:intergenic | 30.0% | |
| TATTATTTAGGCCATCTTCA+GGG | - | chr8.2:77089101-77089120 | None:intergenic | 30.0% | |
| TCAAATGCATTCAAATTGTG+AGG | + | chr8.2:77087171-77087190 | MS.gene37005:CDS | 30.0% | |
| TCGACAATTATCTTAGGTTA+TGG | + | chr8.2:77088842-77088861 | MS.gene37005:intron | 30.0% | |
| TCGATATCTTTGTATGGAAA+AGG | - | chr8.2:77089408-77089427 | None:intergenic | 30.0% | |
| TCTAGGGGAATTGAAAAATT+TGG | + | chr8.2:77090092-77090111 | MS.gene37005:CDS | 30.0% | |
| TGTAATTGAGAATTTAGACG+TGG | + | chr8.2:77088566-77088585 | MS.gene37005:intron | 30.0% | |
| TTATTATTTAGGCCATCTTC+AGG | - | chr8.2:77089102-77089121 | None:intergenic | 30.0% | |
| TTGACTTTATCGTATCTTCA+TGG | - | chr8.2:77088518-77088537 | None:intergenic | 30.0% | |
| TTTATCGTATCTTCATGGTT+TGG | - | chr8.2:77088513-77088532 | None:intergenic | 30.0% | |
| TTTGAGTCGATATCTTTGTA+TGG | - | chr8.2:77089414-77089433 | None:intergenic | 30.0% | |
| TTTGGGGGAAGATATTAATA+GGG | + | chr8.2:77087285-77087304 | MS.gene37005:CDS | 30.0% | |
| ! | AACTTTTATCTGCAGGTTAT+AGG | + | chr8.2:77089040-77089059 | MS.gene37005:intron | 30.0% |
| ! | GTTAAGTTACTTGTTTCTTC+AGG | + | chr8.2:77089447-77089466 | MS.gene37005:CDS | 30.0% |
| ! | TGTAAAATGGACTTTCCAAT+TGG | - | chr8.2:77089939-77089958 | None:intergenic | 30.0% |
| ! | TTCGTTCATGTCTTATGTTT+TGG | + | chr8.2:77087702-77087721 | MS.gene37005:intron | 30.0% |
| !! | AGTTGAAAAGTGTCCTAATA+CGG | - | chr8.2:77090138-77090157 | None:intergenic | 30.0% |
| !! | ATATCGACTCAAACGATATA+GGG | + | chr8.2:77089421-77089440 | MS.gene37005:CDS | 30.0% |
| !! | CATACAAACTATTTTCTGGT+TGG | + | chr8.2:77088061-77088080 | MS.gene37005:intron | 30.0% |
| !! | CTCCTACTAGATTTTTGAAA+TGG | + | chr8.2:77089715-77089734 | MS.gene37005:CDS | 30.0% |
| !! | TCACCTTTAAGGTTAATAAG+TGG | - | chr8.2:77087957-77087976 | None:intergenic | 30.0% |
| !!! | TACAAACTATTTTCTGGTTG+GGG | + | chr8.2:77088063-77088082 | MS.gene37005:intron | 30.0% |
| !!! | TTAGACGTGGTTTTATAGAA+AGG | + | chr8.2:77088579-77088598 | MS.gene37005:intron | 30.0% |
| AAGACTCACAATAAGAGTAG+AGG | - | chr8.2:77089179-77089198 | None:intergenic | 35.0% | |
| AAGATCTGTTACTAGGTTTG+GGG | + | chr8.2:77087269-77087288 | MS.gene37005:CDS | 35.0% | |
| AATAAAATTGGTCATGGTGG+TGG | + | chr8.2:77089120-77089139 | MS.gene37005:CDS | 35.0% | |
| AATGTGAAGGACATTGTTGA+AGG | + | chr8.2:77089066-77089085 | MS.gene37005:CDS | 35.0% | |
| ACTAGATGTTGCCTTTGTAT+AGG | - | chr8.2:77088628-77088647 | None:intergenic | 35.0% | |
| AGGTTATAGGCAAAATGTGA+AGG | + | chr8.2:77089053-77089072 | MS.gene37005:intron | 35.0% | |
| ATCAACTGAATTATGCTCAC+AGG | - | chr8.2:77087883-77087902 | None:intergenic | 35.0% | |
| ATTTCTTTATGGGGATCTAG+TGG | - | chr8.2:77087799-77087818 | None:intergenic | 35.0% | |
| CAAAGATCTGTTACTAGGTT+TGG | + | chr8.2:77087267-77087286 | MS.gene37005:CDS | 35.0% | |
| CATTATATATGTAAGGGTCG+GGG | + | chr8.2:77087913-77087932 | MS.gene37005:intron | 35.0% | |
| CATTTCTAATACCAATGGAG+AGG | + | chr8.2:77089788-77089807 | MS.gene37005:CDS | 35.0% | |
| CCTCCACTTATTAACCTTAA+AGG | + | chr8.2:77087951-77087970 | MS.gene37005:intron | 35.0% | |
| GAAACTTCAGCATATAGAGA+AGG | - | chr8.2:77089594-77089613 | None:intergenic | 35.0% | |
| GTTTGGGGGAAGATATTAAT+AGG | + | chr8.2:77087284-77087303 | MS.gene37005:CDS | 35.0% | |
| TCAAACTTCAAGTCCAAGAA+AGG | + | chr8.2:77089982-77090001 | MS.gene37005:CDS | 35.0% | |
| TCACACTTGTATGATCTCTA+GGG | + | chr8.2:77090076-77090095 | MS.gene37005:CDS | 35.0% | |
| TCTAAAGGATGCTATCCAAT+TGG | + | chr8.2:77089921-77089940 | MS.gene37005:CDS | 35.0% | |
| TGGAATACTCTCCAAAAACT+TGG | - | chr8.2:77090177-77090196 | None:intergenic | 35.0% | |
| TTTCAACTAATCTTGCTGCA+AGG | + | chr8.2:77090150-77090169 | MS.gene37005:CDS | 35.0% | |
| ! | AAAAGTACACATCGTTTCTG+CGG | + | chr8.2:77088930-77088949 | MS.gene37005:intron | 35.0% |
| ! | ACATGACACTTGACTTGAAA+TGG | - | chr8.2:77089210-77089229 | None:intergenic | 35.0% |
| ! | CATCATTTGCTTCCCTTTTA+TGG | + | chr8.2:77089873-77089892 | MS.gene37005:CDS | 35.0% |
| ! | TTACTTGTTTCTTCAGGATC+TGG | + | chr8.2:77089453-77089472 | MS.gene37005:CDS | 35.0% |
| ! | TTTCAAGTCAAGTGTCATGT+TGG | + | chr8.2:77089210-77089229 | MS.gene37005:CDS | 35.0% |
| !! | CCTTTAAGGTTAATAAGTGG+AGG | - | chr8.2:77087954-77087973 | None:intergenic | 35.0% |
| !! | GATATCGACTCAAACGATAT+AGG | + | chr8.2:77089420-77089439 | MS.gene37005:CDS | 35.0% |
| !! | TAGAATTTGCCTTTCTGGTT+TGG | + | chr8.2:77088457-77088476 | MS.gene37005:intron | 35.0% |
| !!! | ACAAACTATTTTCTGGTTGG+GGG | + | chr8.2:77088064-77088083 | MS.gene37005:intron | 35.0% |
| AAGGACCACTAGATCAATGT+TGG | + | chr8.2:77089565-77089584 | MS.gene37005:CDS | 40.0% | |
| ACATAAGACATGAACGAAGG+TGG | - | chr8.2:77087700-77087719 | None:intergenic | 40.0% | |
| AGATCATAGTTACTCACCTC+TGG | - | chr8.2:77087362-77087381 | None:intergenic | 40.0% | |
| AGATCTGTTACTAGGTTTGG+GGG | + | chr8.2:77087270-77087289 | MS.gene37005:CDS | 40.0% | |
| AGTATGATAGCAACTCCTTC+TGG | - | chr8.2:77089369-77089388 | None:intergenic | 40.0% | |
| ATCAAACCTTACCTCTCCAT+TGG | - | chr8.2:77089802-77089821 | None:intergenic | 40.0% | |
| ATCACATTTCCACCTACCAA+TGG | - | chr8.2:77090038-77090057 | None:intergenic | 40.0% | |
| ATCTTTGACTGCACACTCAA+TGG | - | chr8.2:77087254-77087273 | None:intergenic | 40.0% | |
| ATGGGTAGAATTTGCCTTTC+TGG | + | chr8.2:77088452-77088471 | MS.gene37005:intron | 40.0% | |
| ATGTGTTCAGCTTTGCATCA+AGG | + | chr8.2:77089336-77089355 | MS.gene37005:CDS | 40.0% | |
| CAAGTGCTACATCTCTTGAA+GGG | + | chr8.2:77090195-77090214 | MS.gene37005:CDS | 40.0% | |
| CACACTTGTATGATCTCTAG+GGG | + | chr8.2:77090077-77090096 | MS.gene37005:CDS | 40.0% | |
| CTAATACCAATGGAGAGGTA+AGG | + | chr8.2:77089793-77089812 | MS.gene37005:CDS | 40.0% | |
| GAAACCATTTCACCATTGGT+AGG | + | chr8.2:77090023-77090042 | MS.gene37005:CDS | 40.0% | |
| GCAGTCAAAGATCTGTTACT+AGG | + | chr8.2:77087262-77087281 | MS.gene37005:CDS | 40.0% | |
| GGGGAAGATATTAATAGGGA+AGG | + | chr8.2:77087289-77087308 | MS.gene37005:CDS | 40.0% | |
| GTCACACTTGTATGATCTCT+AGG | + | chr8.2:77090075-77090094 | MS.gene37005:CDS | 40.0% | |
| TCTACAAGCTCTTTCCTTGT+TGG | - | chr8.2:77089693-77089712 | None:intergenic | 40.0% | |
| TCTGCTTTGTAAGCCTTTCT+TGG | - | chr8.2:77089998-77090017 | None:intergenic | 40.0% | |
| TGCAGAAACCATTTCACCAT+TGG | + | chr8.2:77090019-77090038 | MS.gene37005:CDS | 40.0% | |
| TGCTCACATTGTGACCAAAA+AGG | - | chr8.2:77089855-77089874 | None:intergenic | 40.0% | |
| TGTGTTCAGCTTTGCATCAA+GGG | + | chr8.2:77089337-77089356 | MS.gene37005:CDS | 40.0% | |
| ! | AAAGTGTCCTAATACGGCAA+TGG | - | chr8.2:77090132-77090151 | None:intergenic | 40.0% |
| ! | CATGTTGGTTATATCCCTTC+AGG | + | chr8.2:77089225-77089244 | MS.gene37005:CDS | 40.0% |
| ! | CTGAAGTGAACTTGCCTTTT+TGG | + | chr8.2:77089838-77089857 | MS.gene37005:CDS | 40.0% |
| ! | CTTTAGGAGAAGATCCAACA+AGG | + | chr8.2:77089676-77089695 | MS.gene37005:CDS | 40.0% |
| AAGGCCTTTGCAACACGAAA+TGG | - | chr8.2:77087328-77087347 | None:intergenic | 45.0% | |
| ACCATTTCACCATTGGTAGG+TGG | + | chr8.2:77090026-77090045 | MS.gene37005:CDS | 45.0% | |
| ATCTCATCTGCTAAACGCTG+AGG | - | chr8.2:77089318-77089337 | None:intergenic | 45.0% | |
| CATCAAGGGATACAACCAGA+AGG | + | chr8.2:77089351-77089370 | MS.gene37005:CDS | 45.0% | |
| CCAAGTGCTACATCTCTTGA+AGG | + | chr8.2:77090194-77090213 | MS.gene37005:CDS | 45.0% | |
| CCTTCAAGAGATGTAGCACT+TGG | - | chr8.2:77090197-77090216 | None:intergenic | 45.0% | |
| CGACTCAAACGATATAGGGT+GGG | + | chr8.2:77089425-77089444 | MS.gene37005:CDS | 45.0% | |
| GACACCATTTCGTGTTGCAA+AGG | + | chr8.2:77087321-77087340 | MS.gene37005:CDS | 45.0% | |
| GGACACCAACATTGATCTAG+TGG | - | chr8.2:77089573-77089592 | None:intergenic | 45.0% | |
| GGTGCATTATTCCCTGAAGA+TGG | + | chr8.2:77089087-77089106 | MS.gene37005:CDS | 45.0% | |
| TCCACCTACCAATGGTGAAA+TGG | - | chr8.2:77090030-77090049 | None:intergenic | 45.0% | |
| TCCTAATACGGCAATGGTTG+CGG | - | chr8.2:77090126-77090145 | None:intergenic | 45.0% | |
| TCGACTCAAACGATATAGGG+TGG | + | chr8.2:77089424-77089443 | MS.gene37005:CDS | 45.0% | |
| TGCTTAAGCCTACCACTCTT+TGG | - | chr8.2:77089251-77089270 | None:intergenic | 45.0% | |
| TTCCGTTCGATTCTCTCCTA+GGG | + | chr8.2:77088480-77088499 | MS.gene37005:intron | 45.0% | |
| ! | ACCTCTGGTTCCTTCAGAAA+AGG | - | chr8.2:77087347-77087366 | None:intergenic | 45.0% |
| ! | GTTGCAAAGGCCTTTTCTGA+AGG | + | chr8.2:77087334-77087353 | MS.gene37005:CDS | 45.0% |
| ! | TGCTGCAAGGACCAAGTTTT+TGG | + | chr8.2:77090163-77090182 | MS.gene37005:CDS | 45.0% |
| !! | ATGGTTTGGTTCTATCCCCT+AGG | - | chr8.2:77088499-77088518 | None:intergenic | 45.0% |
| !!! | TGTACTTTTGAGATCCGCTG+TGG | - | chr8.2:77088919-77088938 | None:intergenic | 45.0% |
| !! | TTTATAAAAAAATTCTTATA+AGG | - | chr8.2:77088695-77088714 | None:intergenic | 5.0% |
| ACCGCAACCATTGCCGTATT+AGG | + | chr8.2:77090122-77090141 | MS.gene37005:CDS | 50.0% | |
| CGAACGGAACCAAACCAGAA+AGG | - | chr8.2:77088469-77088488 | None:intergenic | 50.0% | |
| CTACCACTCTTTGGCCTGAA+GGG | - | chr8.2:77089242-77089261 | None:intergenic | 50.0% | |
| CTTAAGCAAGCTTCCTCGTG+TGG | + | chr8.2:77089263-77089282 | MS.gene37005:CDS | 50.0% | |
| GTTCCGTTCGATTCTCTCCT+AGG | + | chr8.2:77088479-77088498 | MS.gene37005:intron | 50.0% | |
| TATCCCTTCAGGCCAAAGAG+TGG | + | chr8.2:77089236-77089255 | MS.gene37005:CDS | 50.0% | |
| TCCCCTAGGAGAGAATCGAA+CGG | - | chr8.2:77088485-77088504 | None:intergenic | 50.0% | |
| TCCGTTCGATTCTCTCCTAG+GGG | + | chr8.2:77088481-77088500 | MS.gene37005:intron | 50.0% | |
| ! | AAAGCATCTGGTGACAGGGA+CGG | - | chr8.2:77087677-77087696 | None:intergenic | 50.0% |
| !! | ATTGGTCATGGTGGTGGAGT+AGG | + | chr8.2:77089126-77089145 | MS.gene37005:CDS | 50.0% |
| !! | GAACGAAGGTGGAAAGCATC+TGG | - | chr8.2:77087689-77087708 | None:intergenic | 50.0% |
| !! | GCCTTTTCTGAAGGAACCAG+AGG | + | chr8.2:77087343-77087362 | MS.gene37005:CDS | 50.0% |
| !! | GTGGAAAGCATCTGGTGACA+GGG | - | chr8.2:77087681-77087700 | None:intergenic | 50.0% |
| AAGCAAGCTTCCTCGTGTGG+CGG | + | chr8.2:77089266-77089285 | MS.gene37005:CDS | 55.0% | |
| AAGCATCTGGTGACAGGGAC+GGG | - | chr8.2:77087676-77087695 | None:intergenic | 55.0% | |
| CCTACCACTCTTTGGCCTGA+AGG | - | chr8.2:77089243-77089262 | None:intergenic | 55.0% | |
| CCTTCAGGCCAAAGAGTGGT+AGG | + | chr8.2:77089240-77089259 | MS.gene37005:CDS | 55.0% | |
| !! | GGTGGAAAGCATCTGGTGAC+AGG | - | chr8.2:77087682-77087701 | None:intergenic | 55.0% |
| AGCATCTGGTGACAGGGACG+GGG | - | chr8.2:77087675-77087694 | None:intergenic | 60.0% | |
| GCAAATGCTTCCGCCACACG+AGG | - | chr8.2:77089279-77089298 | None:intergenic | 60.0% | |
| !! | GGTCATGGTGGTGGAGTAGG+TGG | + | chr8.2:77089129-77089148 | MS.gene37005:CDS | 60.0% |
| GCATCTGGTGACAGGGACGG+GGG | - | chr8.2:77087674-77087693 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 77087157 | 77090223 | 77087157 | ID=MS.gene37005 |
| chr8.2 | mRNA | 77087157 | 77090223 | 77087157 | ID=MS.gene37005.t1;Parent=MS.gene37005 |
| chr8.2 | exon | 77087157 | 77087364 | 77087157 | ID=MS.gene37005.t1.exon1;Parent=MS.gene37005.t1 |
| chr8.2 | CDS | 77087157 | 77087364 | 77087157 | ID=cds.MS.gene37005.t1;Parent=MS.gene37005.t1 |
| chr8.2 | exon | 77089055 | 77090223 | 77089055 | ID=MS.gene37005.t1.exon2;Parent=MS.gene37005.t1 |
| chr8.2 | CDS | 77089055 | 77090223 | 77089055 | ID=cds.MS.gene37005.t1;Parent=MS.gene37005.t1 |
| Gene Sequence |
| Protein sequence |
