Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37709.t1 | XP_013452839.1 | 97.4 | 230 | 6 | 0 | 1 | 230 | 1 | 230 | 5.90E-77 | 297.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37709.t1 | Q7SXU0 | 40.5 | 111 | 64 | 2 | 87 | 196 | 102 | 211 | 8.8e-13 | 75.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37709.t1 | I3SKP6 | 97.4 | 230 | 6 | 0 | 1 | 230 | 1 | 230 | 4.2e-77 | 297.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05190 | MS.gene37709 | 0.948517 | 8.06E-107 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene018560 | MS.gene37709 | PPI |
| MS.gene050761 | MS.gene37709 | PPI |
| MS.gene050964 | MS.gene37709 | PPI |
| MS.gene09852 | MS.gene37709 | PPI |
| MS.gene37709 | MS.gene061898 | PPI |
| MS.gene37709 | MS.gene054381 | PPI |
| MS.gene37709 | MS.gene072563 | PPI |
| MS.gene37709 | MS.gene64519 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37709.t1 | MTR_6g478160 | 98.696 | 230 | 3 | 0 | 1 | 230 | 1 | 230 | 7.54e-163 | 449 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37709.t1 | AT5G37475 | 64.502 | 231 | 72 | 6 | 3 | 230 | 2 | 225 | 6.34e-84 | 249 |
| MS.gene37709.t1 | AT5G37475 | 64.502 | 231 | 72 | 6 | 3 | 230 | 2 | 225 | 6.34e-84 | 249 |
| MS.gene37709.t1 | AT5G37475 | 64.502 | 231 | 72 | 6 | 3 | 230 | 2 | 225 | 6.34e-84 | 249 |
| MS.gene37709.t1 | AT1G66070 | 65.086 | 232 | 70 | 7 | 3 | 230 | 2 | 226 | 4.73e-83 | 247 |
| MS.gene37709.t1 | AT1G66070 | 65.086 | 232 | 70 | 7 | 3 | 230 | 2 | 226 | 4.73e-83 | 247 |
Find 36 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAGCCACCTAAACTTAAA+TGG | 0.183700 | 6.3:-71205348 | MS.gene37709:CDS |
| GCAGAAAAGTTATCATTATA+TGG | 0.227051 | 6.3:-71203258 | MS.gene37709:intron |
| TCATCTTCCCATTTAAGTTT+AGG | 0.277379 | 6.3:+71205340 | None:intergenic |
| GAAATCTGAGAGTGATTTCT+TGG | 0.281694 | 6.3:-71203398 | MS.gene37709:CDS |
| TACAGAAGACGCAATATCTT+TGG | 0.316638 | 6.3:+71203181 | None:intergenic |
| ATGCAAATCAATACCTTTGT+TGG | 0.335246 | 6.3:+71204593 | None:intergenic |
| ATATCGATGACTTCTCTAAA+AGG | 0.352339 | 6.3:-71203212 | MS.gene37709:CDS |
| AAGAAATCACTCTCAGATTT+CGG | 0.374125 | 6.3:+71203400 | None:intergenic |
| AGTTGAAGAAGCAGATTATA+AGG | 0.395629 | 6.3:-71203479 | MS.gene37709:CDS |
| GACGACAATGGAGGATGATT+GGG | 0.396252 | 6.3:-71206528 | None:intergenic |
| AAGGCCACTAAGGAATTGTT+TGG | 0.397033 | 6.3:-71203460 | MS.gene37709:CDS |
| CTCATGTAACTTAAGATCAA+TGG | 0.397639 | 6.3:+71205366 | None:intergenic |
| TGACGACAATGGAGGATGAT+TGG | 0.406272 | 6.3:-71206529 | None:intergenic |
| TGTTTCAGAGGAAGAGCAAT+TGG | 0.407424 | 6.3:-71205392 | MS.gene37709:intron |
| GGAAGAACCACTGGATCCTC+TGG | 0.438453 | 6.3:-71204629 | MS.gene37709:CDS |
| GCAGCAACAAAATCTTCATC+AGG | 0.455398 | 6.3:+71202961 | None:intergenic |
| TGCTGATCGATATGATGCTT+TGG | 0.462854 | 6.3:-71202941 | MS.gene37709:CDS |
| TGAGCCACCTAAACTTAAAT+GGG | 0.467131 | 6.3:-71205347 | MS.gene37709:CDS |
| CAGAAAAGTTATCATTATAT+GGG | 0.471042 | 6.3:-71203257 | MS.gene37709:CDS |
| CAGATTGTCCTTACAGGAGC+GGG | 0.475362 | 6.3:+71205268 | None:intergenic |
| TCATGTAACTTAAGATCAAT+GGG | 0.477397 | 6.3:+71205367 | None:intergenic |
| ACCACCAAACAATTCCTTAG+TGG | 0.482673 | 6.3:+71203456 | None:intergenic |
| AGCAGATTATAAGGCCACTA+AGG | 0.514749 | 6.3:-71203470 | MS.gene37709:CDS |
| AAAAGAAAAGGAAGAACCAC+TGG | 0.521558 | 6.3:-71204638 | MS.gene37709:CDS |
| ATTTCGGTATAAAAGTATCA+AGG | 0.522172 | 6.3:+71203416 | None:intergenic |
| TCTTCCCATTTAAGTTTAGG+TGG | 0.522816 | 6.3:+71205343 | None:intergenic |
| AAGATGATGTGAAGGACTCA+TGG | 0.536684 | 6.3:-71205306 | MS.gene37709:CDS |
| ACTAAGGAATTGTTTGGTGG+TGG | 0.543912 | 6.3:-71203454 | MS.gene37709:CDS |
| GCCACTAAGGAATTGTTTGG+TGG | 0.550879 | 6.3:-71203457 | MS.gene37709:CDS |
| GCAGAGAAAGAAGCCAATGC+TGG | 0.560128 | 6.3:-71203131 | MS.gene37709:CDS |
| TCAGATTGTCCTTACAGGAG+CGG | 0.604509 | 6.3:+71205267 | None:intergenic |
| ACGACAATGGAGGATGATTG+GGG | 0.635958 | 6.3:-71206527 | None:intergenic |
| AGATGATGTGAAGGACTCAT+GGG | 0.641424 | 6.3:-71205305 | MS.gene37709:CDS |
| CGTGGATGAAGATGATGTGA+AGG | 0.652162 | 6.3:-71205314 | MS.gene37709:CDS |
| ATGCAGAGCTCATCTCACAC+AGG | 0.689643 | 6.3:-71203372 | MS.gene37709:CDS |
| TAAATGGGAAGATGAAGACG+TGG | 0.710584 | 6.3:-71205332 | MS.gene37709:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATCAATAAAATAATAAAA+CGG | - | chr6.3:71203709-71203728 | MS.gene37709:intron | 10.0% |
| !! | AAAATAAAAAATTATGTCCA+TGG | + | chr6.3:71204417-71204436 | None:intergenic | 15.0% |
| !! | AAAATATTAAATATGGTATC+TGG | + | chr6.3:71203599-71203618 | None:intergenic | 15.0% |
| !! | ATACTAAATTAGTAATTGTT+AGG | + | chr6.3:71204513-71204532 | None:intergenic | 15.0% |
| !! | GCATGATAAAATATTAAATA+TGG | + | chr6.3:71203606-71203625 | None:intergenic | 15.0% |
| !!! | AGTTTTAAAATAAAAAATGG+TGG | - | chr6.3:71204251-71204270 | MS.gene37709:intron | 15.0% |
| !!! | ATAACTTTATATAAGTTTTC+AGG | + | chr6.3:71203760-71203779 | None:intergenic | 15.0% |
| !!! | CGTTTTATTATTTTATTGAT+TGG | + | chr6.3:71203711-71203730 | None:intergenic | 15.0% |
| !! | AAACAAGCAATAAGTATTTA+AGG | + | chr6.3:71204664-71204683 | None:intergenic | 20.0% |
| !! | ACATTCTACAAATAGTTAAA+AGG | + | chr6.3:71206138-71206157 | None:intergenic | 20.0% |
| !! | ATAATAAAAGCAACATAGAA+AGG | + | chr6.3:71206374-71206393 | None:intergenic | 20.0% |
| !! | CAGAAAAGTTATCATTATAT+GGG | - | chr6.3:71206185-71206204 | MS.gene37709:intron | 20.0% |
| !! | GGATGTTTATGAATTATTAT+TGG | - | chr6.3:71203667-71203686 | MS.gene37709:intron | 20.0% |
| !! | TAATTTAATGAGTTTCATGA+TGG | - | chr6.3:71204532-71204551 | MS.gene37709:intron | 20.0% |
| !! | TACAAATAGTTAAAAGGAAA+GGG | + | chr6.3:71206132-71206151 | None:intergenic | 20.0% |
| !!! | TAAAAGATTTAAAGCAAATG+TGG | + | chr6.3:71204356-71204375 | None:intergenic | 20.0% |
| !!! | TCTTTTCCTTTTACTAAATT+TGG | - | chr6.3:71205842-71205861 | MS.gene37709:intron | 20.0% |
| ! | AAAATTGAAATCAATGGGAA+AGG | + | chr6.3:71206414-71206433 | None:intergenic | 25.0% |
| ! | AAACTCGCTAAATTGTATTT+GGG | + | chr6.3:71203065-71203084 | None:intergenic | 25.0% |
| ! | AATAGAGAACAGATATACTT+AGG | + | chr6.3:71205774-71205793 | None:intergenic | 25.0% |
| ! | ATGTCCCAAATTAAAGAATA+AGG | + | chr6.3:71202959-71202978 | None:intergenic | 25.0% |
| ! | CATAGGAAGTAAATTAAATC+AGG | + | chr6.3:71205936-71205955 | None:intergenic | 25.0% |
| ! | CTACAAATAGTTAAAAGGAA+AGG | + | chr6.3:71206133-71206152 | None:intergenic | 25.0% |
| ! | GCAGAAAAGTTATCATTATA+TGG | - | chr6.3:71206184-71206203 | MS.gene37709:intron | 25.0% |
| ! | GGCAAAAAATTGAAATCAAT+GGG | + | chr6.3:71206419-71206438 | None:intergenic | 25.0% |
| ! | GTTATCCTAAAAGGAATATT+AGG | + | chr6.3:71204894-71204913 | None:intergenic | 25.0% |
| ! | TAAATCATAGGATTCAAACA+GGG | - | chr6.3:71205292-71205311 | MS.gene37709:CDS | 25.0% |
| ! | TCATGTAACTTAAGATCAAT+GGG | + | chr6.3:71204078-71204097 | None:intergenic | 25.0% |
| ! | TGATAACAAGTTATCCTAAA+AGG | + | chr6.3:71204903-71204922 | None:intergenic | 25.0% |
| !! | ACAGATTTTTCTCCTAATAT+AGG | + | chr6.3:71203090-71203109 | None:intergenic | 25.0% |
| !! | CATAATCATATTTTCTTAGC+CGG | + | chr6.3:71204994-71205013 | None:intergenic | 25.0% |
| !! | GCTTTTATGTACTTCTTTTA+CGG | - | chr6.3:71205072-71205091 | MS.gene37709:intron | 25.0% |
| !! | TATTTTCTTTAGACAAGATG+TGG | - | chr6.3:71204431-71204450 | MS.gene37709:intron | 25.0% |
| !! | TTGATCCTAATATTCCTTTT+AGG | - | chr6.3:71204886-71204905 | MS.gene37709:intron | 25.0% |
| !! | TTTGATCTTTTCATTTGCAA+TGG | + | chr6.3:71206291-71206310 | None:intergenic | 25.0% |
| !!! | ATTTCGGTATAAAAGTATCA+AGG | + | chr6.3:71206029-71206048 | None:intergenic | 25.0% |
| !!! | GGAAAAGATAGTTTTACATA+AGG | + | chr6.3:71205830-71205849 | None:intergenic | 25.0% |
| !!! | TAGACGTTTTAATCATAGAA+AGG | + | chr6.3:71205725-71205744 | None:intergenic | 25.0% |
| !!! | TTAAGGACACAGTTTTTTAA+GGG | + | chr6.3:71204647-71204666 | None:intergenic | 25.0% |
| !!! | TTGGTATCGATATATATCTT+AGG | - | chr6.3:71205477-71205496 | MS.gene37709:intron | 25.0% |
| !!! | TTTAAGGACACAGTTTTTTA+AGG | + | chr6.3:71204648-71204667 | None:intergenic | 25.0% |
| !!! | TTTTTCTAGCTAAGTAAGAT+TGG | + | chr6.3:71205531-71205550 | None:intergenic | 25.0% |
| AAATTGTATTTGGGTACTCA+GGG | + | chr6.3:71203056-71203075 | None:intergenic | 30.0% | |
| AAGAAATCACTCTCAGATTT+CGG | + | chr6.3:71206045-71206064 | None:intergenic | 30.0% | |
| AAGCAGCTGAAAACATTTAA+TGG | - | chr6.3:71203397-71203416 | MS.gene37709:CDS | 30.0% | |
| AATAGACTTTGGTCAAAGAA+AGG | + | chr6.3:71205658-71205677 | None:intergenic | 30.0% | |
| AATGTTGTATGACACTGAAA+TGG | - | chr6.3:71205405-71205424 | MS.gene37709:intron | 30.0% | |
| ACCAAAGTCTATTTAAGTAC+AGG | - | chr6.3:71205665-71205684 | MS.gene37709:intron | 30.0% | |
| ACCTGTACTTAAATAGACTT+TGG | + | chr6.3:71205669-71205688 | None:intergenic | 30.0% | |
| AGTAGAACCAGAAAAAGAAA+AGG | - | chr6.3:71204792-71204811 | MS.gene37709:intron | 30.0% | |
| AGTTGAAGAAGCAGATTATA+AGG | - | chr6.3:71205963-71205982 | MS.gene37709:intron | 30.0% | |
| ATATCGATACCAAATGACAT+TGG | + | chr6.3:71205470-71205489 | None:intergenic | 30.0% | |
| ATATCGATGACTTCTCTAAA+AGG | - | chr6.3:71206230-71206249 | MS.gene37709:intron | 30.0% | |
| ATGCAAATCAATACCTTTGT+TGG | + | chr6.3:71204852-71204871 | None:intergenic | 30.0% | |
| ATTTCAGTGTCATACAACAT+TGG | + | chr6.3:71205406-71205425 | None:intergenic | 30.0% | |
| CATTCATCAAGAAGAAAGTT+AGG | + | chr6.3:71206165-71206184 | None:intergenic | 30.0% | |
| CCAAATTAAAGAATAAGGTG+GGG | + | chr6.3:71202954-71202973 | None:intergenic | 30.0% | |
| CCCAAATTAAAGAATAAGGT+GGG | + | chr6.3:71202955-71202974 | None:intergenic | 30.0% | |
| CGGCAAAAAATTGAAATCAA+TGG | + | chr6.3:71206420-71206439 | None:intergenic | 30.0% | |
| CTACAAGTAGAAGTAAAGAA+AGG | - | chr6.3:71205571-71205590 | MS.gene37709:intron | 30.0% | |
| CTAGCTATATGTTAGTTACA+CGG | - | chr6.3:71205239-71205258 | MS.gene37709:intron | 30.0% | |
| CTCATGTAACTTAAGATCAA+TGG | + | chr6.3:71204079-71204098 | None:intergenic | 30.0% | |
| CTGAAATTGTTATAGTTCCA+TGG | - | chr6.3:71204397-71204416 | MS.gene37709:intron | 30.0% | |
| GAAAAAGCTACTGAAAAGAA+GGG | - | chr6.3:71204763-71204782 | MS.gene37709:intron | 30.0% | |
| GAAACTCGCTAAATTGTATT+TGG | + | chr6.3:71203066-71203085 | None:intergenic | 30.0% | |
| GAATGAGGACATCATATAAA+AGG | - | chr6.3:71205879-71205898 | MS.gene37709:intron | 30.0% | |
| GTAAATCATAGGATTCAAAC+AGG | - | chr6.3:71205291-71205310 | MS.gene37709:CDS | 30.0% | |
| GTCTGTTACATAACAAAAGT+GGG | + | chr6.3:71202984-71203003 | None:intergenic | 30.0% | |
| TAAATCCTTTCTCTTTACTG+AGG | - | chr6.3:71203646-71203665 | MS.gene37709:intron | 30.0% | |
| TAAATTGTATTTGGGTACTC+AGG | + | chr6.3:71203057-71203076 | None:intergenic | 30.0% | |
| TACATAAAAGCAACCAAACA+AGG | + | chr6.3:71205063-71205082 | None:intergenic | 30.0% | |
| TATCGATACCAAATGACATT+GGG | + | chr6.3:71205469-71205488 | None:intergenic | 30.0% | |
| TCCCAAATTAAAGAATAAGG+TGG | + | chr6.3:71202956-71202975 | None:intergenic | 30.0% | |
| TGAAAAAGCTACTGAAAAGA+AGG | - | chr6.3:71204762-71204781 | MS.gene37709:intron | 30.0% | |
| TGACAGCCAAATTTAGTAAA+AGG | + | chr6.3:71205851-71205870 | None:intergenic | 30.0% | |
| TGTGGCAATAATTAGTACTT+AGG | + | chr6.3:71205372-71205391 | None:intergenic | 30.0% | |
| TTTCAGTGTCATACAACATT+GGG | + | chr6.3:71205405-71205424 | None:intergenic | 30.0% | |
| ! | AACTTGCTCAAGTCTAAATT+AGG | + | chr6.3:71205913-71205932 | None:intergenic | 30.0% |
| ! | AATTAGTACTTAGGCTTTAG+TGG | + | chr6.3:71205363-71205382 | None:intergenic | 30.0% |
| ! | AGCATTTTCACAAGTTATCT+CGG | - | chr6.3:71203359-71203378 | MS.gene37709:CDS | 30.0% |
| ! | CCCACCTTATTCTTTAATTT+GGG | - | chr6.3:71202952-71202971 | MS.gene37709:CDS | 30.0% |
| ! | TCATCTTCCCATTTAAGTTT+AGG | + | chr6.3:71204105-71204124 | None:intergenic | 30.0% |
| ! | TTCAAACAGTTGATATGTGT+TGG | - | chr6.3:71203538-71203557 | MS.gene37709:intron | 30.0% |
| ! | TTGACAGTTCACTAACATTT+TGG | - | chr6.3:71203792-71203811 | MS.gene37709:intron | 30.0% |
| ! | TTTTCCATCACAAATTGCAA+CGG | + | chr6.3:71205337-71205356 | None:intergenic | 30.0% |
| !!! | GTTTTTTAAGGGTGTATCTA+AGG | + | chr6.3:71204636-71204655 | None:intergenic | 30.0% |
| !!! | TTTTCAGTAGCTTTTTCAGA+AGG | + | chr6.3:71204760-71204779 | None:intergenic | 30.0% |
| AAAAGAAAAGGAAGAACCAC+TGG | - | chr6.3:71204804-71204823 | MS.gene37709:intron | 35.0% | |
| AAAAGAACAACTGCATATCC+AGG | + | chr6.3:71203515-71203534 | None:intergenic | 35.0% | |
| AAAGAACAACTGCATATCCA+GGG | + | chr6.3:71203514-71203533 | None:intergenic | 35.0% | |
| AAAGTGGTCTGTGAATACAT+TGG | - | chr6.3:71205115-71205134 | MS.gene37709:intron | 35.0% | |
| AAATCACTTGTGAGACTGTT+TGG | + | chr6.3:71203453-71203472 | None:intergenic | 35.0% | |
| AACATCCTCAGTAAAGAGAA+AGG | + | chr6.3:71203654-71203673 | None:intergenic | 35.0% | |
| AAGTGGTCTGTGAATACATT+GGG | - | chr6.3:71205116-71205135 | MS.gene37709:intron | 35.0% | |
| AATCACTTGTGAGACTGTTT+GGG | + | chr6.3:71203452-71203471 | None:intergenic | 35.0% | |
| AATCATAGAAAGGAAGCCAA+AGG | + | chr6.3:71205715-71205734 | None:intergenic | 35.0% | |
| AATGCTGGTAAAAAGAAGAC+AGG | - | chr6.3:71206326-71206345 | MS.gene37709:intron | 35.0% | |
| AATTCCGTTGCAATTTGTGA+TGG | - | chr6.3:71205330-71205349 | MS.gene37709:CDS | 35.0% | |
| ACATTGGGTCTTAAAATGTG+TGG | + | chr6.3:71205390-71205409 | None:intergenic | 35.0% | |
| ACCAAACAAGGAAGAAGATT+TGG | + | chr6.3:71205051-71205070 | None:intergenic | 35.0% | |
| AGAAAACCGAGAATAACATC+TGG | - | chr6.3:71203238-71203257 | MS.gene37709:CDS | 35.0% | |
| AGAATCATACAGTGTGTGAT+TGG | + | chr6.3:71203925-71203944 | None:intergenic | 35.0% | |
| AGGAGAAAAATCTGTGAACT+TGG | - | chr6.3:71203095-71203114 | MS.gene37709:intron | 35.0% | |
| ATACAGTGTGTGATTGGAAT+AGG | + | chr6.3:71203919-71203938 | None:intergenic | 35.0% | |
| ATGAGCCACCTAAACTTAAA+TGG | - | chr6.3:71204094-71204113 | MS.gene37709:intron | 35.0% | |
| ATTGAAATCAATGGGAAAGG+AGG | + | chr6.3:71206411-71206430 | None:intergenic | 35.0% | |
| CCAAACAAGGAAGAAGATTT+GGG | + | chr6.3:71205050-71205069 | None:intergenic | 35.0% | |
| CCCCACCTTATTCTTTAATT+TGG | - | chr6.3:71202951-71202970 | MS.gene37709:CDS | 35.0% | |
| GAAAACCGAGAATAACATCT+GGG | - | chr6.3:71203239-71203258 | MS.gene37709:CDS | 35.0% | |
| GAAATCTGAGAGTGATTTCT+TGG | - | chr6.3:71206044-71206063 | MS.gene37709:intron | 35.0% | |
| GGACATCATATAAAAGGAAC+AGG | - | chr6.3:71205885-71205904 | MS.gene37709:intron | 35.0% | |
| GGAGAAAAATCTGTGAACTT+GGG | - | chr6.3:71203096-71203115 | MS.gene37709:intron | 35.0% | |
| GGTCTGTTACATAACAAAAG+TGG | + | chr6.3:71202985-71203004 | None:intergenic | 35.0% | |
| TAAAGAAAGGTTGCGAATGA+GGG | - | chr6.3:71205584-71205603 | MS.gene37709:intron | 35.0% | |
| TAAAGCAAATGTGGTTGCAT+TGG | + | chr6.3:71204347-71204366 | None:intergenic | 35.0% | |
| TACAGAAGACGCAATATCTT+TGG | + | chr6.3:71206264-71206283 | None:intergenic | 35.0% | |
| TACAGTGTGTGATTGGAATA+GGG | + | chr6.3:71203918-71203937 | None:intergenic | 35.0% | |
| TAGCGAGTTTCTCCTATATT+AGG | - | chr6.3:71203075-71203094 | MS.gene37709:intron | 35.0% | |
| TCTTAGAGGCTGTAAATCAT+AGG | - | chr6.3:71205280-71205299 | MS.gene37709:intron | 35.0% | |
| TGAGCCACCTAAACTTAAAT+GGG | - | chr6.3:71204095-71204114 | MS.gene37709:intron | 35.0% | |
| TGCAGTAAAAACTACTGAGA+AGG | - | chr6.3:71204723-71204742 | MS.gene37709:CDS | 35.0% | |
| TGCTTGTGTATTTGTTTCAG+AGG | - | chr6.3:71204038-71204057 | MS.gene37709:intron | 35.0% | |
| ! | ACAGGTTGAATTGGCTTATT+TGG | + | chr6.3:71203491-71203510 | None:intergenic | 35.0% |
| ! | AGATGTTATTCTCGGTTTTC+TGG | + | chr6.3:71203239-71203258 | None:intergenic | 35.0% |
| ! | GCTAAGTAAGATTGGCTATA+AGG | + | chr6.3:71205523-71205542 | None:intergenic | 35.0% |
| ! | GGTTCTTCCTTTTCTTTTTC+TGG | + | chr6.3:71204802-71204821 | None:intergenic | 35.0% |
| ! | TAAATATGGTATCTGGAGTC+AGG | + | chr6.3:71203592-71203611 | None:intergenic | 35.0% |
| ! | TCTTCCCATTTAAGTTTAGG+TGG | + | chr6.3:71204102-71204121 | None:intergenic | 35.0% |
| ! | TCTTTTCAGATTGTCCTTAC+AGG | + | chr6.3:71204183-71204202 | None:intergenic | 35.0% |
| ! | TGTCTTCTTTTTACCAGCAT+TGG | + | chr6.3:71206327-71206346 | None:intergenic | 35.0% |
| ! | TTCTCAGTAGTTTTTACTGC+AGG | + | chr6.3:71204724-71204743 | None:intergenic | 35.0% |
| ! | TTCTTCAACTAGTCTGTCAT+AGG | + | chr6.3:71205953-71205972 | None:intergenic | 35.0% |
| !!! | CAATTTTTTGCCGTGTCTTT+AGG | - | chr6.3:71206427-71206446 | MS.gene37709:intron | 35.0% |
| !!! | GCTTTTTCAGAAGGCTTTTT+AGG | + | chr6.3:71204751-71204770 | None:intergenic | 35.0% |
| !!! | GTGGTTTTATTGTGGTAAAG+TGG | - | chr6.3:71205099-71205118 | MS.gene37709:intron | 35.0% |
| !!! | TTTTAGAGCCAGTTCTTCTT+TGG | - | chr6.3:71205163-71205182 | MS.gene37709:intron | 35.0% |
| AAATGGCAATGAGCTCTTTG+CGG | - | chr6.3:71205422-71205441 | MS.gene37709:intron | 40.0% | |
| AAGATGATGTGAAGGACTCA+TGG | - | chr6.3:71204136-71204155 | MS.gene37709:intron | 40.0% | |
| AAGGCCACTAAGGAATTGTT+TGG | - | chr6.3:71205982-71206001 | MS.gene37709:intron | 40.0% | |
| ACCACCAAACAATTCCTTAG+TGG | + | chr6.3:71205989-71206008 | None:intergenic | 40.0% | |
| AGATGATGTGAAGGACTCAT+GGG | - | chr6.3:71204137-71204156 | MS.gene37709:intron | 40.0% | |
| AGCAGATTATAAGGCCACTA+AGG | - | chr6.3:71205972-71205991 | MS.gene37709:intron | 40.0% | |
| AGTAGATGCCAAAGAAGAAC+TGG | + | chr6.3:71205174-71205193 | None:intergenic | 40.0% | |
| ATAAGGCCTAGACAACACAA+TGG | + | chr6.3:71205506-71205525 | None:intergenic | 40.0% | |
| ATCATAGGATTCAAACAGGG+TGG | - | chr6.3:71205295-71205314 | MS.gene37709:CDS | 40.0% | |
| CCCAAATCTTCTTCCTTGTT+TGG | - | chr6.3:71205047-71205066 | MS.gene37709:intron | 40.0% | |
| CTGAAAAACTTCGCCAACAA+AGG | - | chr6.3:71204836-71204855 | MS.gene37709:intron | 40.0% | |
| CTTTAGACAAGATGTGGTGT+GGG | - | chr6.3:71204437-71204456 | MS.gene37709:intron | 40.0% | |
| GCAGCAACAAAATCTTCATC+AGG | + | chr6.3:71206484-71206503 | None:intergenic | 40.0% | |
| GCTGTCATAGTTTCTGAATG+AGG | - | chr6.3:71205864-71205883 | MS.gene37709:intron | 40.0% | |
| GTAAAGAAAGGTTGCGAATG+AGG | - | chr6.3:71205583-71205602 | MS.gene37709:intron | 40.0% | |
| TAAATGGGAAGATGAAGACG+TGG | - | chr6.3:71204110-71204129 | MS.gene37709:intron | 40.0% | |
| TCTTTAGACAAGATGTGGTG+TGG | - | chr6.3:71204436-71204455 | MS.gene37709:intron | 40.0% | |
| TGAACCTGAATACGTGGTAT+AGG | + | chr6.3:71203166-71203185 | None:intergenic | 40.0% | |
| TGCTGATCGATATGATGCTT+TGG | - | chr6.3:71206501-71206520 | MS.gene37709:intron | 40.0% | |
| TGTTTCAGAGGAAGAGCAAT+TGG | - | chr6.3:71204050-71204069 | MS.gene37709:intron | 40.0% | |
| TTTAGACAAGATGTGGTGTG+GGG | - | chr6.3:71204438-71204457 | MS.gene37709:intron | 40.0% | |
| TTTCTTGCCACCTAAAGACA+CGG | + | chr6.3:71206440-71206459 | None:intergenic | 40.0% | |
| ! | AAGAAGATTTGGGTTTGTGG+AGG | + | chr6.3:71205040-71205059 | None:intergenic | 40.0% |
| ! | ACTAAGGAATTGTTTGGTGG+TGG | - | chr6.3:71205988-71206007 | MS.gene37709:intron | 40.0% |
| ! | AGGAAGAAGATTTGGGTTTG+TGG | + | chr6.3:71205043-71205062 | None:intergenic | 40.0% |
| ! | ATCATATTTTCTTAGCCGGC+AGG | + | chr6.3:71204990-71205009 | None:intergenic | 40.0% |
| ! | GTACTTCTTTTACGGAAACG+TGG | - | chr6.3:71205080-71205099 | MS.gene37709:intron | 40.0% |
| !!! | ACGGAAACGTGGTTTTATTG+TGG | - | chr6.3:71205091-71205110 | MS.gene37709:intron | 40.0% |
| !!! | TAGCTCTTTTTGGGTCTTAG+AGG | - | chr6.3:71205266-71205285 | MS.gene37709:intron | 40.0% |
| !!! | TTTTTTGCCGTGTCTTTAGG+TGG | - | chr6.3:71206430-71206449 | MS.gene37709:intron | 40.0% |
| AACCGAGAATAACATCTGGG+TGG | - | chr6.3:71203242-71203261 | MS.gene37709:CDS | 45.0% | |
| AATGAGCTCTTTGCGGAGAT+GGG | - | chr6.3:71205429-71205448 | MS.gene37709:intron | 45.0% | |
| ACCGAGAATAACATCTGGGT+GGG | - | chr6.3:71203243-71203262 | MS.gene37709:CDS | 45.0% | |
| ACGATGGACCCAATGTCATT+TGG | - | chr6.3:71205458-71205477 | MS.gene37709:intron | 45.0% | |
| ACTTTCCGAACTCTCCCTAT+GGG | - | chr6.3:71203130-71203149 | MS.gene37709:CDS | 45.0% | |
| AGGTCACCATTGTGTTGTCT+AGG | - | chr6.3:71205497-71205516 | MS.gene37709:intron | 45.0% | |
| AGGTGAGAAAACCGTAACAG+TGG | + | chr6.3:71203027-71203046 | None:intergenic | 45.0% | |
| ATAGGTACCACAGTTCCCAT+AGG | + | chr6.3:71203148-71203167 | None:intergenic | 45.0% | |
| CATCTACTGTGTACTTGTGC+AGG | - | chr6.3:71205186-71205205 | MS.gene37709:intron | 45.0% | |
| CGTGGATGAAGATGATGTGA+AGG | - | chr6.3:71204128-71204147 | MS.gene37709:intron | 45.0% | |
| CTGTCAACAACCCACTGTTA+CGG | - | chr6.3:71203013-71203032 | MS.gene37709:intron | 45.0% | |
| GCCACTAAGGAATTGTTTGG+TGG | - | chr6.3:71205985-71206004 | MS.gene37709:intron | 45.0% | |
| GGTACCTATACCACGTATTC+AGG | - | chr6.3:71203159-71203178 | MS.gene37709:CDS | 45.0% | |
| GGTGAGAAAACCGTAACAGT+GGG | + | chr6.3:71203026-71203045 | None:intergenic | 45.0% | |
| GGTGGACATAGCTCATTCAT+AGG | - | chr6.3:71204269-71204288 | MS.gene37709:intron | 45.0% | |
| TAGGTACCACAGTTCCCATA+GGG | + | chr6.3:71203147-71203166 | None:intergenic | 45.0% | |
| TATTTGGGTACTCAGGGAAG+AGG | + | chr6.3:71203050-71203069 | None:intergenic | 45.0% | |
| TCAGATTGTCCTTACAGGAG+CGG | + | chr6.3:71204178-71204197 | None:intergenic | 45.0% | |
| ! | AACATTCTGTAGCCTTGCCA+TGG | - | chr6.3:71204961-71204980 | MS.gene37709:intron | 45.0% |
| ! | ACACGGTGAGTAGCTCTTTT+TGG | - | chr6.3:71205256-71205275 | MS.gene37709:intron | 45.0% |
| ! | ATATGGTATCTGGAGTCAGG+TGG | + | chr6.3:71203589-71203608 | None:intergenic | 45.0% |
| ! | ATGTGGTTGCATTGGCATCA+AGG | + | chr6.3:71204339-71204358 | None:intergenic | 45.0% |
| ! | CACGGTGAGTAGCTCTTTTT+GGG | - | chr6.3:71205257-71205276 | MS.gene37709:intron | 45.0% |
| ! | GTATTCAGGTTCAACTCCCA+TGG | - | chr6.3:71203173-71203192 | MS.gene37709:CDS | 45.0% |
| ! | TATCCAGGGACAGGTTGAAT+TGG | + | chr6.3:71203500-71203519 | None:intergenic | 45.0% |
| !!! | TATAGTTTTAAAATAAAAAA+TGG | - | chr6.3:71204248-71204267 | MS.gene37709:intron | 5.0% |
| AACTCTCCCTATGGGAACTG+TGG | - | chr6.3:71203138-71203157 | MS.gene37709:CDS | 50.0% | |
| AAGCCAATTCAACCTGTCCC+TGG | - | chr6.3:71203494-71203513 | MS.gene37709:intron | 50.0% | |
| ACAACTGCATATCCAGGGAC+AGG | + | chr6.3:71203509-71203528 | None:intergenic | 50.0% | |
| AGAAAGGTTGCGAATGAGGG+AGG | - | chr6.3:71205587-71205606 | MS.gene37709:intron | 50.0% | |
| AGCGAGTGTTTGCCTTCCAT+GGG | + | chr6.3:71203192-71203211 | None:intergenic | 50.0% | |
| ATGCAGAGCTCATCTCACAC+AGG | - | chr6.3:71206070-71206089 | MS.gene37709:intron | 50.0% | |
| CAATGAGCTCTTTGCGGAGA+TGG | - | chr6.3:71205428-71205447 | MS.gene37709:intron | 50.0% | |
| CACTCGCTAAAATGTCCCTG+CGG | - | chr6.3:71203204-71203223 | MS.gene37709:CDS | 50.0% | |
| CACTTTCCGAACTCTCCCTA+TGG | - | chr6.3:71203129-71203148 | MS.gene37709:CDS | 50.0% | |
| CAGATTGTCCTTACAGGAGC+GGG | + | chr6.3:71204177-71204196 | None:intergenic | 50.0% | |
| CAGTTCCCATAGGGAGAGTT+CGG | + | chr6.3:71203138-71203157 | None:intergenic | 50.0% | |
| CCCCACCCAGATGTTATTCT+CGG | + | chr6.3:71203247-71203266 | None:intergenic | 50.0% | |
| CCGAGAATAACATCTGGGTG+GGG | - | chr6.3:71203244-71203263 | MS.gene37709:CDS | 50.0% | |
| CGTGCTTGCATGCTATCATC+AGG | - | chr6.3:71204687-71204706 | MS.gene37709:CDS | 50.0% | |
| GAAAGGTTGCGAATGAGGGA+GGG | - | chr6.3:71205588-71205607 | MS.gene37709:intron | 50.0% | |
| GCAGAGAAAGAAGCCAATGC+TGG | - | chr6.3:71206311-71206330 | MS.gene37709:intron | 50.0% | |
| GGGAGTTGAACCTGAATACG+TGG | + | chr6.3:71203172-71203191 | None:intergenic | 50.0% | |
| TAAAATGTCCCTGCGGCAGA+GGG | - | chr6.3:71203211-71203230 | MS.gene37709:CDS | 50.0% | |
| TAGCGAGTGTTTGCCTTCCA+TGG | + | chr6.3:71203193-71203212 | None:intergenic | 50.0% | |
| TAGGGAGAGTTCGGAAAGTG+TGG | + | chr6.3:71203129-71203148 | None:intergenic | 50.0% | |
| TCAGGTTCAACTCCCATGGA+AGG | - | chr6.3:71203177-71203196 | MS.gene37709:CDS | 50.0% | |
| ! | ACACAGGCTTCGTGCTTTTG+AGG | - | chr6.3:71206086-71206105 | MS.gene37709:intron | 50.0% |
| ! | CGGAGATGGGACTTTTACGA+TGG | - | chr6.3:71205442-71205461 | MS.gene37709:intron | 50.0% |
| ! | TTTTCAGCCAGAGGATCCAG+TGG | + | chr6.3:71204823-71204842 | None:intergenic | 50.0% |
| !! | ACAGTGGGTTGTTGACAGGT+AGG | + | chr6.3:71203011-71203030 | None:intergenic | 50.0% |
| !! | CGTAACAGTGGGTTGTTGAC+AGG | + | chr6.3:71203015-71203034 | None:intergenic | 50.0% |
| !! | GTTTTTACTGCAGGTGCTGC+AGG | + | chr6.3:71204715-71204734 | None:intergenic | 50.0% |
| !! | TGGCGAAGTTTTTCAGCCAG+AGG | + | chr6.3:71204832-71204851 | None:intergenic | 50.0% |
| CTAAAATGTCCCTGCGGCAG+AGG | - | chr6.3:71203210-71203229 | MS.gene37709:CDS | 55.0% | |
| GAATAACATCTGGGTGGGGC+TGG | - | chr6.3:71203248-71203267 | MS.gene37709:CDS | 55.0% | |
| GGAAGAACCACTGGATCCTC+TGG | - | chr6.3:71204813-71204832 | MS.gene37709:intron | 55.0% | |
| GGGTTGTTGACAGGTAGGAC+TGG | + | chr6.3:71203006-71203025 | None:intergenic | 55.0% | |
| TTGGGTACTCAGGGAAGAGG+AGG | + | chr6.3:71203047-71203066 | None:intergenic | 55.0% | |
| AAGACGAGCCCGCTCCTGTA+AGG | - | chr6.3:71204166-71204185 | MS.gene37709:intron | 60.0% | |
| GCGTCGCTGCAGTAGACCTT+TGG | - | chr6.3:71205696-71205715 | MS.gene37709:intron | 60.0% | |
| TCTTAGCCGGCAGGCATCCA+TGG | + | chr6.3:71204981-71205000 | None:intergenic | 60.0% | |
| GCCTTGCCATGGATGCCTGC+CGG | - | chr6.3:71204972-71204991 | MS.gene37709:intron | 65.0% | |
| TTCTGGCACCCTCTGCCGCA+GGG | + | chr6.3:71203222-71203241 | None:intergenic | 65.0% | |
| ! | TTTCTGGCACCCTCTGCCGC+AGG | + | chr6.3:71203223-71203242 | None:intergenic | 65.0% |
| GCCGGCAGGCATCCATGGCA+AGG | + | chr6.3:71204976-71204995 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 71202921 | 71206543 | 71202921 | ID=MS.gene37709 |
| chr6.3 | mRNA | 71202921 | 71206543 | 71202921 | ID=MS.gene37709.t1;Parent=MS.gene37709 |
| chr6.3 | exon | 71206528 | 71206543 | 71206528 | ID=MS.gene37709.t1.exon1;Parent=MS.gene37709.t1 |
| chr6.3 | CDS | 71206528 | 71206543 | 71206528 | ID=cds.MS.gene37709.t1;Parent=MS.gene37709.t1 |
| chr6.3 | exon | 71205282 | 71205406 | 71205282 | ID=MS.gene37709.t1.exon2;Parent=MS.gene37709.t1 |
| chr6.3 | CDS | 71205282 | 71205406 | 71205282 | ID=cds.MS.gene37709.t1;Parent=MS.gene37709.t1 |
| chr6.3 | exon | 71204607 | 71204755 | 71204607 | ID=MS.gene37709.t1.exon3;Parent=MS.gene37709.t1 |
| chr6.3 | CDS | 71204607 | 71204755 | 71204607 | ID=cds.MS.gene37709.t1;Parent=MS.gene37709.t1 |
| chr6.3 | exon | 71203357 | 71203504 | 71203357 | ID=MS.gene37709.t1.exon4;Parent=MS.gene37709.t1 |
| chr6.3 | CDS | 71203357 | 71203504 | 71203357 | ID=cds.MS.gene37709.t1;Parent=MS.gene37709.t1 |
| chr6.3 | exon | 71203117 | 71203276 | 71203117 | ID=MS.gene37709.t1.exon5;Parent=MS.gene37709.t1 |
| chr6.3 | CDS | 71203117 | 71203276 | 71203117 | ID=cds.MS.gene37709.t1;Parent=MS.gene37709.t1 |
| chr6.3 | exon | 71202921 | 71203015 | 71202921 | ID=MS.gene37709.t1.exon6;Parent=MS.gene37709.t1 |
| chr6.3 | CDS | 71202921 | 71203015 | 71202921 | ID=cds.MS.gene37709.t1;Parent=MS.gene37709.t1 |
| Gene Sequence |
| Protein sequence |
