Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05190.t1 | XP_013452839.1 | 97.4 | 230 | 6 | 0 | 1 | 230 | 1 | 230 | 5.90E-77 | 297.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05190.t1 | Q7SXU0 | 40.5 | 111 | 64 | 2 | 87 | 196 | 102 | 211 | 8.8e-13 | 75.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05190.t1 | I3SKP6 | 97.4 | 230 | 6 | 0 | 1 | 230 | 1 | 230 | 4.2e-77 | 297.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05190 | MS.gene057094 | 0.809904 | 1.50E-50 | -1.69E-46 |
| MS.gene05190 | MS.gene057144 | 0.807126 | 5.89E-50 | -1.69E-46 |
| MS.gene05190 | MS.gene057145 | 0.802812 | 4.70E-49 | -1.69E-46 |
| MS.gene05190 | MS.gene37293 | 0.842978 | 1.86E-58 | -1.69E-46 |
| MS.gene05190 | MS.gene37709 | 0.948517 | 8.06E-107 | -1.69E-46 |
| MS.gene05190 | MS.gene48279 | 0.823656 | 1.23E-53 | -1.69E-46 |
| MS.gene05190 | MS.gene48281 | 0.822571 | 2.21E-53 | -1.69E-46 |
| MS.gene05190 | MS.gene48400 | 0.810785 | 9.70E-51 | -1.69E-46 |
| MS.gene05190 | MS.gene55744 | 0.824264 | 8.87E-54 | -1.69E-46 |
| MS.gene05190 | MS.gene58707 | 0.801948 | 7.08E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene05190 | MS.gene09852 | PPI |
| MS.gene05190 | MS.gene018560 | PPI |
| MS.gene05190 | MS.gene050964 | PPI |
| MS.gene05190 | MS.gene050761 | PPI |
| MS.gene05190 | MS.gene072563 | PPI |
| MS.gene05190 | MS.gene061898 | PPI |
| MS.gene05190 | MS.gene054381 | PPI |
| MS.gene05190 | MS.gene64519 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05190.t1 | MTR_6g478160 | 98.696 | 230 | 3 | 0 | 1 | 230 | 1 | 230 | 7.54e-163 | 449 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05190.t1 | AT5G37475 | 64.502 | 231 | 72 | 6 | 3 | 230 | 2 | 225 | 6.34e-84 | 249 |
| MS.gene05190.t1 | AT5G37475 | 64.502 | 231 | 72 | 6 | 3 | 230 | 2 | 225 | 6.34e-84 | 249 |
| MS.gene05190.t1 | AT5G37475 | 64.502 | 231 | 72 | 6 | 3 | 230 | 2 | 225 | 6.34e-84 | 249 |
| MS.gene05190.t1 | AT1G66070 | 65.086 | 232 | 70 | 7 | 3 | 230 | 2 | 226 | 4.73e-83 | 247 |
| MS.gene05190.t1 | AT1G66070 | 65.086 | 232 | 70 | 7 | 3 | 230 | 2 | 226 | 4.73e-83 | 247 |
Find 36 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAGCCACCTAAACTTAAA+TGG | 0.183700 | 6.4:+52273379 | MS.gene05190:CDS |
| GCAGAAAAGTTATCATTATA+TGG | 0.227051 | 6.4:+52275469 | MS.gene05190:intron |
| TCATCTTCCCATTTAAGTTT+AGG | 0.277379 | 6.4:-52273387 | None:intergenic |
| GAAATCTGAGAGTGATTTCT+TGG | 0.281694 | 6.4:+52275329 | MS.gene05190:CDS |
| TACAGAAGACGCAATATCTT+TGG | 0.316638 | 6.4:-52275546 | None:intergenic |
| ATGCAAATCAATACCTTTGT+TGG | 0.335246 | 6.4:-52274134 | None:intergenic |
| ATATCGATGACTTCTCTAAA+AGG | 0.352339 | 6.4:+52275515 | MS.gene05190:CDS |
| AAGAAATCACTCTCAGATTT+CGG | 0.374125 | 6.4:-52275327 | None:intergenic |
| AGTTGAAGAAGCAGATTATA+AGG | 0.395629 | 6.4:+52275248 | MS.gene05190:CDS |
| GACGACAATGGAGGATGATT+GGG | 0.396252 | 6.4:+52272199 | None:intergenic |
| AAGGCCACTAAGGAATTGTT+TGG | 0.397033 | 6.4:+52275267 | MS.gene05190:CDS |
| CTCATGTAACTTAAGATCAA+TGG | 0.397639 | 6.4:-52273361 | None:intergenic |
| TGACGACAATGGAGGATGAT+TGG | 0.406272 | 6.4:+52272198 | None:intergenic |
| TGTTTCAGAGGAAGAGCAAT+TGG | 0.407424 | 6.4:+52273335 | MS.gene05190:intron |
| GGAAGAACCACTGGATCCTC+TGG | 0.438453 | 6.4:+52274098 | MS.gene05190:CDS |
| GCAGCAACAAAATCTTCATC+AGG | 0.455398 | 6.4:-52275766 | None:intergenic |
| TGCTGATCGATATGATGCTT+TGG | 0.462854 | 6.4:+52275786 | MS.gene05190:CDS |
| TGAGCCACCTAAACTTAAAT+GGG | 0.467131 | 6.4:+52273380 | MS.gene05190:CDS |
| CAGAAAAGTTATCATTATAT+GGG | 0.471042 | 6.4:+52275470 | MS.gene05190:intron |
| CAGATTGTCCTTACAGGAGC+GGG | 0.475362 | 6.4:-52273459 | None:intergenic |
| TCATGTAACTTAAGATCAAT+GGG | 0.477397 | 6.4:-52273360 | None:intergenic |
| ACCACCAAACAATTCCTTAG+TGG | 0.482673 | 6.4:-52275271 | None:intergenic |
| AGCAGATTATAAGGCCACTA+AGG | 0.514749 | 6.4:+52275257 | MS.gene05190:CDS |
| AAAAGAAAAGGAAGAACCAC+TGG | 0.521558 | 6.4:+52274089 | MS.gene05190:CDS |
| ATTTCGGTATAAAAGTATCA+AGG | 0.522172 | 6.4:-52275311 | None:intergenic |
| TCTTCCCATTTAAGTTTAGG+TGG | 0.522816 | 6.4:-52273384 | None:intergenic |
| AAGATGATGTGAAGGACTCA+TGG | 0.536684 | 6.4:+52273421 | MS.gene05190:CDS |
| ACTAAGGAATTGTTTGGTGG+TGG | 0.543912 | 6.4:+52275273 | MS.gene05190:CDS |
| GCCACTAAGGAATTGTTTGG+TGG | 0.550879 | 6.4:+52275270 | MS.gene05190:CDS |
| GCAGAGAAAGAAGCCAATGC+TGG | 0.560128 | 6.4:+52275596 | MS.gene05190:CDS |
| TCAGATTGTCCTTACAGGAG+CGG | 0.604509 | 6.4:-52273460 | None:intergenic |
| ACGACAATGGAGGATGATTG+GGG | 0.635958 | 6.4:+52272200 | None:intergenic |
| AGATGATGTGAAGGACTCAT+GGG | 0.641424 | 6.4:+52273422 | MS.gene05190:CDS |
| CGTGGATGAAGATGATGTGA+AGG | 0.652162 | 6.4:+52273413 | MS.gene05190:CDS |
| ATGCAGAGCTCATCTCACAC+AGG | 0.689643 | 6.4:+52275355 | MS.gene05190:CDS |
| TAAATGGGAAGATGAAGACG+TGG | 0.710584 | 6.4:+52273395 | MS.gene05190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATCAATAAAATAATAAAA+CGG | + | chr6.4:52272994-52273013 | MS.gene05190:intron | 10.0% |
| !! | AAAATAAAAAATTATGTCCA+TGG | - | chr6.4:52273702-52273721 | None:intergenic | 15.0% |
| !! | AAAATATTAAATATGGTATC+TGG | - | chr6.4:52272884-52272903 | None:intergenic | 15.0% |
| !! | ATACTAAATTAGTAATTGTT+AGG | - | chr6.4:52273798-52273817 | None:intergenic | 15.0% |
| !! | GCATGATAAAATATTAAATA+TGG | - | chr6.4:52272891-52272910 | None:intergenic | 15.0% |
| !!! | AGTTTTAAAATAAAAAATGG+TGG | + | chr6.4:52273536-52273555 | MS.gene05190:intron | 15.0% |
| !!! | ATAACTTTATATAAGTTTTC+AGG | - | chr6.4:52273045-52273064 | None:intergenic | 15.0% |
| !!! | CGTTTTATTATTTTATTGAT+TGG | - | chr6.4:52272996-52273015 | None:intergenic | 15.0% |
| !! | AAACAAGCAATAAGTATTTA+AGG | - | chr6.4:52273949-52273968 | None:intergenic | 20.0% |
| !! | ACATTCTACAAATAGTTAAA+AGG | - | chr6.4:52275423-52275442 | None:intergenic | 20.0% |
| !! | ATAATAAAAGCAACATAGAA+AGG | - | chr6.4:52275659-52275678 | None:intergenic | 20.0% |
| !! | CAGAAAAGTTATCATTATAT+GGG | + | chr6.4:52275470-52275489 | MS.gene05190:intron | 20.0% |
| !! | GGATGTTTATGAATTATTAT+TGG | + | chr6.4:52272952-52272971 | MS.gene05190:intron | 20.0% |
| !! | TAATTTAATGAGTTTCATGA+TGG | + | chr6.4:52273817-52273836 | MS.gene05190:intron | 20.0% |
| !! | TACAAATAGTTAAAAGGAAA+GGG | - | chr6.4:52275417-52275436 | None:intergenic | 20.0% |
| !!! | TAAAAGATTTAAAGCAAATG+TGG | - | chr6.4:52273641-52273660 | None:intergenic | 20.0% |
| !!! | TCTTTTCCTTTTACTAAATT+TGG | + | chr6.4:52275127-52275146 | MS.gene05190:intron | 20.0% |
| ! | AAAATTGAAATCAATGGGAA+AGG | - | chr6.4:52275699-52275718 | None:intergenic | 25.0% |
| ! | AAACTCGCTAAATTGTATTT+GGG | - | chr6.4:52272350-52272369 | None:intergenic | 25.0% |
| ! | AATAGAGAACAGATATACTT+AGG | - | chr6.4:52275059-52275078 | None:intergenic | 25.0% |
| ! | ATGTCCCAAATTAAAGAATA+AGG | - | chr6.4:52272244-52272263 | None:intergenic | 25.0% |
| ! | CATAGGAAGTAAATTAAATC+AGG | - | chr6.4:52275221-52275240 | None:intergenic | 25.0% |
| ! | CTACAAATAGTTAAAAGGAA+AGG | - | chr6.4:52275418-52275437 | None:intergenic | 25.0% |
| ! | GCAGAAAAGTTATCATTATA+TGG | + | chr6.4:52275469-52275488 | MS.gene05190:intron | 25.0% |
| ! | GGCAAAAAATTGAAATCAAT+GGG | - | chr6.4:52275704-52275723 | None:intergenic | 25.0% |
| ! | GTTATCCTAAAAGGAATATT+AGG | - | chr6.4:52274179-52274198 | None:intergenic | 25.0% |
| ! | TAAATCATAGGATTCAAACA+GGG | + | chr6.4:52274577-52274596 | MS.gene05190:intron | 25.0% |
| ! | TCATGTAACTTAAGATCAAT+GGG | - | chr6.4:52273363-52273382 | None:intergenic | 25.0% |
| ! | TGATAACAAGTTATCCTAAA+AGG | - | chr6.4:52274188-52274207 | None:intergenic | 25.0% |
| !! | ACAGATTTTTCTCCTAATAT+AGG | - | chr6.4:52272375-52272394 | None:intergenic | 25.0% |
| !! | CATAATCATATTTTCTTAGC+CGG | - | chr6.4:52274279-52274298 | None:intergenic | 25.0% |
| !! | GCTTTTATGTACTTCTTTTA+CGG | + | chr6.4:52274357-52274376 | MS.gene05190:intron | 25.0% |
| !! | TATTTTCTTTAGACAAGATG+TGG | + | chr6.4:52273716-52273735 | MS.gene05190:intron | 25.0% |
| !! | TTGATCCTAATATTCCTTTT+AGG | + | chr6.4:52274171-52274190 | MS.gene05190:intron | 25.0% |
| !! | TTTGATCTTTTCATTTGCAA+TGG | - | chr6.4:52275576-52275595 | None:intergenic | 25.0% |
| !!! | ATTTCGGTATAAAAGTATCA+AGG | - | chr6.4:52275314-52275333 | None:intergenic | 25.0% |
| !!! | GGAAAAGATAGTTTTACATA+AGG | - | chr6.4:52275115-52275134 | None:intergenic | 25.0% |
| !!! | TAGACGTTTTAATCATAGAA+AGG | - | chr6.4:52275010-52275029 | None:intergenic | 25.0% |
| !!! | TTAAGGACACAGTTTTTTAA+GGG | - | chr6.4:52273932-52273951 | None:intergenic | 25.0% |
| !!! | TTGGTATCGATATATATCTT+AGG | + | chr6.4:52274762-52274781 | MS.gene05190:intron | 25.0% |
| !!! | TTTAAGGACACAGTTTTTTA+AGG | - | chr6.4:52273933-52273952 | None:intergenic | 25.0% |
| !!! | TTTTTCTAGCTAAGTAAGAT+TGG | - | chr6.4:52274816-52274835 | None:intergenic | 25.0% |
| AAATTGTATTTGGGTACTCA+GGG | - | chr6.4:52272341-52272360 | None:intergenic | 30.0% | |
| AAGAAATCACTCTCAGATTT+CGG | - | chr6.4:52275330-52275349 | None:intergenic | 30.0% | |
| AAGCAGCTGAAAACATTTAA+TGG | + | chr6.4:52272682-52272701 | MS.gene05190:intron | 30.0% | |
| AATAGACTTTGGTCAAAGAA+AGG | - | chr6.4:52274943-52274962 | None:intergenic | 30.0% | |
| AATGTTGTATGACACTGAAA+TGG | + | chr6.4:52274690-52274709 | MS.gene05190:intron | 30.0% | |
| ACCAAAGTCTATTTAAGTAC+AGG | + | chr6.4:52274950-52274969 | MS.gene05190:intron | 30.0% | |
| ACCTGTACTTAAATAGACTT+TGG | - | chr6.4:52274954-52274973 | None:intergenic | 30.0% | |
| AGTAGAACCAGAAAAAGAAA+AGG | + | chr6.4:52274077-52274096 | MS.gene05190:CDS | 30.0% | |
| AGTTGAAGAAGCAGATTATA+AGG | + | chr6.4:52275248-52275267 | MS.gene05190:CDS | 30.0% | |
| ATATCGATACCAAATGACAT+TGG | - | chr6.4:52274755-52274774 | None:intergenic | 30.0% | |
| ATATCGATGACTTCTCTAAA+AGG | + | chr6.4:52275515-52275534 | MS.gene05190:CDS | 30.0% | |
| ATGCAAATCAATACCTTTGT+TGG | - | chr6.4:52274137-52274156 | None:intergenic | 30.0% | |
| ATTTCAGTGTCATACAACAT+TGG | - | chr6.4:52274691-52274710 | None:intergenic | 30.0% | |
| CATTCATCAAGAAGAAAGTT+AGG | - | chr6.4:52275450-52275469 | None:intergenic | 30.0% | |
| CCAAATTAAAGAATAAGGTG+GGG | - | chr6.4:52272239-52272258 | None:intergenic | 30.0% | |
| CCCAAATTAAAGAATAAGGT+GGG | - | chr6.4:52272240-52272259 | None:intergenic | 30.0% | |
| CGGCAAAAAATTGAAATCAA+TGG | - | chr6.4:52275705-52275724 | None:intergenic | 30.0% | |
| CTACAAGTAGAAGTAAAGAA+AGG | + | chr6.4:52274856-52274875 | MS.gene05190:intron | 30.0% | |
| CTAGCTATATGTTAGTTACA+CGG | + | chr6.4:52274524-52274543 | MS.gene05190:intron | 30.0% | |
| CTCATGTAACTTAAGATCAA+TGG | - | chr6.4:52273364-52273383 | None:intergenic | 30.0% | |
| CTGAAATTGTTATAGTTCCA+TGG | + | chr6.4:52273682-52273701 | MS.gene05190:intron | 30.0% | |
| GAAAAAGCTACTGAAAAGAA+GGG | + | chr6.4:52274048-52274067 | MS.gene05190:CDS | 30.0% | |
| GAAACTCGCTAAATTGTATT+TGG | - | chr6.4:52272351-52272370 | None:intergenic | 30.0% | |
| GAATGAGGACATCATATAAA+AGG | + | chr6.4:52275164-52275183 | MS.gene05190:intron | 30.0% | |
| GTAAATCATAGGATTCAAAC+AGG | + | chr6.4:52274576-52274595 | MS.gene05190:intron | 30.0% | |
| GTCTGTTACATAACAAAAGT+GGG | - | chr6.4:52272269-52272288 | None:intergenic | 30.0% | |
| TAAATCCTTTCTCTTTACTG+AGG | + | chr6.4:52272931-52272950 | MS.gene05190:intron | 30.0% | |
| TAAATTGTATTTGGGTACTC+AGG | - | chr6.4:52272342-52272361 | None:intergenic | 30.0% | |
| TACATAAAAGCAACCAAACA+AGG | - | chr6.4:52274348-52274367 | None:intergenic | 30.0% | |
| TATCGATACCAAATGACATT+GGG | - | chr6.4:52274754-52274773 | None:intergenic | 30.0% | |
| TCCCAAATTAAAGAATAAGG+TGG | - | chr6.4:52272241-52272260 | None:intergenic | 30.0% | |
| TGAAAAAGCTACTGAAAAGA+AGG | + | chr6.4:52274047-52274066 | MS.gene05190:CDS | 30.0% | |
| TGACAGCCAAATTTAGTAAA+AGG | - | chr6.4:52275136-52275155 | None:intergenic | 30.0% | |
| TGATTGTGTATTTGTTTCAG+AGG | + | chr6.4:52273323-52273342 | MS.gene05190:intron | 30.0% | |
| TGTGGCAATAATTAGTACTT+AGG | - | chr6.4:52274657-52274676 | None:intergenic | 30.0% | |
| TTTCAGTGTCATACAACATT+GGG | - | chr6.4:52274690-52274709 | None:intergenic | 30.0% | |
| ! | AACTTGCTCAAGTCTAAATT+AGG | - | chr6.4:52275198-52275217 | None:intergenic | 30.0% |
| ! | AATTAGTACTTAGGCTTTAG+TGG | - | chr6.4:52274648-52274667 | None:intergenic | 30.0% |
| ! | AGCATTTTCACAAGTTATCT+CGG | + | chr6.4:52272644-52272663 | MS.gene05190:intron | 30.0% |
| ! | CCCACCTTATTCTTTAATTT+GGG | + | chr6.4:52272237-52272256 | MS.gene05190:intron | 30.0% |
| ! | TCATCTTCCCATTTAAGTTT+AGG | - | chr6.4:52273390-52273409 | None:intergenic | 30.0% |
| ! | TTCAAACAGTTGATATGTGT+TGG | + | chr6.4:52272823-52272842 | MS.gene05190:intron | 30.0% |
| ! | TTGACAGTTCACTAACATTT+TGG | + | chr6.4:52273077-52273096 | MS.gene05190:intron | 30.0% |
| ! | TTTTCCATCACAAATTGCAA+CGG | - | chr6.4:52274622-52274641 | None:intergenic | 30.0% |
| !!! | GTTTTTTAAGGGTGTATCTA+AGG | - | chr6.4:52273921-52273940 | None:intergenic | 30.0% |
| !!! | TTTTCAGTAGCTTTTTCAGA+AGG | - | chr6.4:52274045-52274064 | None:intergenic | 30.0% |
| AAAAGAAAAGGAAGAACCAC+TGG | + | chr6.4:52274089-52274108 | MS.gene05190:CDS | 35.0% | |
| AAAAGAACAACTGCATATCC+AGG | - | chr6.4:52272800-52272819 | None:intergenic | 35.0% | |
| AAAGAACAACTGCATATCCA+GGG | - | chr6.4:52272799-52272818 | None:intergenic | 35.0% | |
| AAAGTGGTCTGTGAATACAT+TGG | + | chr6.4:52274400-52274419 | MS.gene05190:intron | 35.0% | |
| AACATCCTCAGTAAAGAGAA+AGG | - | chr6.4:52272939-52272958 | None:intergenic | 35.0% | |
| AAGTGGTCTGTGAATACATT+GGG | + | chr6.4:52274401-52274420 | MS.gene05190:intron | 35.0% | |
| AATCACTTGTGAGACTGTTT+GGG | - | chr6.4:52272737-52272756 | None:intergenic | 35.0% | |
| AATCATAGAAAGGAAGCCAA+AGG | - | chr6.4:52275000-52275019 | None:intergenic | 35.0% | |
| AATGCTGGTAAAAAGAAGAC+AGG | + | chr6.4:52275611-52275630 | MS.gene05190:CDS | 35.0% | |
| AATTCCGTTGCAATTTGTGA+TGG | + | chr6.4:52274615-52274634 | MS.gene05190:intron | 35.0% | |
| ACATTGGGTCTTAAAATGTG+TGG | - | chr6.4:52274675-52274694 | None:intergenic | 35.0% | |
| ACCAAACAAGGAAGAAGATT+TGG | - | chr6.4:52274336-52274355 | None:intergenic | 35.0% | |
| AGAAAACCGAGAATAACATC+TGG | + | chr6.4:52272523-52272542 | MS.gene05190:intron | 35.0% | |
| AGAATCATACAGTGTGTGAT+TGG | - | chr6.4:52273210-52273229 | None:intergenic | 35.0% | |
| AGGAGAAAAATCTGTGAACT+TGG | + | chr6.4:52272380-52272399 | MS.gene05190:intron | 35.0% | |
| ATACAGTGTGTGATTGGAAT+AGG | - | chr6.4:52273204-52273223 | None:intergenic | 35.0% | |
| ATGAGCCACCTAAACTTAAA+TGG | + | chr6.4:52273379-52273398 | MS.gene05190:CDS | 35.0% | |
| ATTGAAATCAATGGGAAAGG+AGG | - | chr6.4:52275696-52275715 | None:intergenic | 35.0% | |
| CCAAACAAGGAAGAAGATTT+GGG | - | chr6.4:52274335-52274354 | None:intergenic | 35.0% | |
| CCCCACCTTATTCTTTAATT+TGG | + | chr6.4:52272236-52272255 | MS.gene05190:intron | 35.0% | |
| GAAAACCGAGAATAACATCT+GGG | + | chr6.4:52272524-52272543 | MS.gene05190:intron | 35.0% | |
| GAAATCTGAGAGTGATTTCT+TGG | + | chr6.4:52275329-52275348 | MS.gene05190:CDS | 35.0% | |
| GGACATCATATAAAAGGAAC+AGG | + | chr6.4:52275170-52275189 | MS.gene05190:intron | 35.0% | |
| GGAGAAAAATCTGTGAACTT+GGG | + | chr6.4:52272381-52272400 | MS.gene05190:intron | 35.0% | |
| GGTCTGTTACATAACAAAAG+TGG | - | chr6.4:52272270-52272289 | None:intergenic | 35.0% | |
| TAAAGAAAGGTTGCGAATGA+GGG | + | chr6.4:52274869-52274888 | MS.gene05190:intron | 35.0% | |
| TAAAGCAAATGTGGTTGCAT+TGG | - | chr6.4:52273632-52273651 | None:intergenic | 35.0% | |
| TAATCACTTGTGAGACTGTT+TGG | - | chr6.4:52272738-52272757 | None:intergenic | 35.0% | |
| TACAGAAGACGCAATATCTT+TGG | - | chr6.4:52275549-52275568 | None:intergenic | 35.0% | |
| TACAGTGTGTGATTGGAATA+GGG | - | chr6.4:52273203-52273222 | None:intergenic | 35.0% | |
| TAGCGAGTTTCTCCTATATT+AGG | + | chr6.4:52272360-52272379 | MS.gene05190:intron | 35.0% | |
| TCTTAGAGGCTGTAAATCAT+AGG | + | chr6.4:52274565-52274584 | MS.gene05190:intron | 35.0% | |
| TGAGCCACCTAAACTTAAAT+GGG | + | chr6.4:52273380-52273399 | MS.gene05190:CDS | 35.0% | |
| TGCAGTAAAAACTACTGAGA+AGG | + | chr6.4:52274008-52274027 | MS.gene05190:CDS | 35.0% | |
| ! | ACAGGTTGAATTGGCTTATT+TGG | - | chr6.4:52272776-52272795 | None:intergenic | 35.0% |
| ! | AGATGTTATTCTCGGTTTTC+TGG | - | chr6.4:52272524-52272543 | None:intergenic | 35.0% |
| ! | GCTAAGTAAGATTGGCTATA+AGG | - | chr6.4:52274808-52274827 | None:intergenic | 35.0% |
| ! | GGTTCTTCCTTTTCTTTTTC+TGG | - | chr6.4:52274087-52274106 | None:intergenic | 35.0% |
| ! | TAAATATGGTATCTGGAGTC+AGG | - | chr6.4:52272877-52272896 | None:intergenic | 35.0% |
| ! | TCTTCCCATTTAAGTTTAGG+TGG | - | chr6.4:52273387-52273406 | None:intergenic | 35.0% |
| ! | TCTTTTCAGATTGTCCTTAC+AGG | - | chr6.4:52273468-52273487 | None:intergenic | 35.0% |
| ! | TGTCTTCTTTTTACCAGCAT+TGG | - | chr6.4:52275612-52275631 | None:intergenic | 35.0% |
| ! | TTCTCAGTAGTTTTTACTGC+AGG | - | chr6.4:52274009-52274028 | None:intergenic | 35.0% |
| ! | TTCTTCAACTAGTCTGTCAT+AGG | - | chr6.4:52275238-52275257 | None:intergenic | 35.0% |
| !!! | CAATTTTTTGCCGTGTCTTT+AGG | + | chr6.4:52275712-52275731 | MS.gene05190:intron | 35.0% |
| !!! | GCTTTTTCAGAAGGCTTTTT+AGG | - | chr6.4:52274036-52274055 | None:intergenic | 35.0% |
| !!! | GTGGTTTTATTGTGGTAAAG+TGG | + | chr6.4:52274384-52274403 | MS.gene05190:intron | 35.0% |
| !!! | TTTTAGAGCCAGTTCTTCTT+TGG | + | chr6.4:52274448-52274467 | MS.gene05190:intron | 35.0% |
| AAATGGCAATGAGCTCTTTG+CGG | + | chr6.4:52274707-52274726 | MS.gene05190:intron | 40.0% | |
| AAGATGATGTGAAGGACTCA+TGG | + | chr6.4:52273421-52273440 | MS.gene05190:CDS | 40.0% | |
| AAGGCCACTAAGGAATTGTT+TGG | + | chr6.4:52275267-52275286 | MS.gene05190:CDS | 40.0% | |
| ACCACCAAACAATTCCTTAG+TGG | - | chr6.4:52275274-52275293 | None:intergenic | 40.0% | |
| AGATGATGTGAAGGACTCAT+GGG | + | chr6.4:52273422-52273441 | MS.gene05190:CDS | 40.0% | |
| AGCAGATTATAAGGCCACTA+AGG | + | chr6.4:52275257-52275276 | MS.gene05190:CDS | 40.0% | |
| AGTAGATGCCAAAGAAGAAC+TGG | - | chr6.4:52274459-52274478 | None:intergenic | 40.0% | |
| ATAAGGCCTAGACAACACAA+TGG | - | chr6.4:52274791-52274810 | None:intergenic | 40.0% | |
| ATCATAGGATTCAAACAGGG+TGG | + | chr6.4:52274580-52274599 | MS.gene05190:intron | 40.0% | |
| CCCAAATCTTCTTCCTTGTT+TGG | + | chr6.4:52274332-52274351 | MS.gene05190:intron | 40.0% | |
| CTGAAAAACTTCGCCAACAA+AGG | + | chr6.4:52274121-52274140 | MS.gene05190:CDS | 40.0% | |
| CTTTAGACAAGATGTGGTGT+GGG | + | chr6.4:52273722-52273741 | MS.gene05190:intron | 40.0% | |
| GCAGCAACAAAATCTTCATC+AGG | - | chr6.4:52275769-52275788 | None:intergenic | 40.0% | |
| GCTGTCATAGTTTCTGAATG+AGG | + | chr6.4:52275149-52275168 | MS.gene05190:intron | 40.0% | |
| GTAAAGAAAGGTTGCGAATG+AGG | + | chr6.4:52274868-52274887 | MS.gene05190:intron | 40.0% | |
| TAAATGGGAAGATGAAGACG+TGG | + | chr6.4:52273395-52273414 | MS.gene05190:CDS | 40.0% | |
| TCTTTAGACAAGATGTGGTG+TGG | + | chr6.4:52273721-52273740 | MS.gene05190:intron | 40.0% | |
| TGAACCTGAATACGTGGTAT+AGG | - | chr6.4:52272451-52272470 | None:intergenic | 40.0% | |
| TGCTGATCGATATGATGCTT+TGG | + | chr6.4:52275786-52275805 | MS.gene05190:CDS | 40.0% | |
| TGTTTCAGAGGAAGAGCAAT+TGG | + | chr6.4:52273335-52273354 | MS.gene05190:intron | 40.0% | |
| TTTAGACAAGATGTGGTGTG+GGG | + | chr6.4:52273723-52273742 | MS.gene05190:intron | 40.0% | |
| TTTCTTGCCACCTAAAGACA+CGG | - | chr6.4:52275725-52275744 | None:intergenic | 40.0% | |
| ! | AAGAAGATTTGGGTTTGTGG+AGG | - | chr6.4:52274325-52274344 | None:intergenic | 40.0% |
| ! | ACTAAGGAATTGTTTGGTGG+TGG | + | chr6.4:52275273-52275292 | MS.gene05190:CDS | 40.0% |
| ! | AGGAAGAAGATTTGGGTTTG+TGG | - | chr6.4:52274328-52274347 | None:intergenic | 40.0% |
| ! | ATCATATTTTCTTAGCCGGC+AGG | - | chr6.4:52274275-52274294 | None:intergenic | 40.0% |
| ! | GTACTTCTTTTACGGAAACG+TGG | + | chr6.4:52274365-52274384 | MS.gene05190:intron | 40.0% |
| !!! | ACGGAAACGTGGTTTTATTG+TGG | + | chr6.4:52274376-52274395 | MS.gene05190:intron | 40.0% |
| !!! | TAGCTCTTTTTGGGTCTTAG+AGG | + | chr6.4:52274551-52274570 | MS.gene05190:intron | 40.0% |
| !!! | TTTTTTGCCGTGTCTTTAGG+TGG | + | chr6.4:52275715-52275734 | MS.gene05190:intron | 40.0% |
| AACCGAGAATAACATCTGGG+TGG | + | chr6.4:52272527-52272546 | MS.gene05190:intron | 45.0% | |
| AATGAGCTCTTTGCGGAGAT+GGG | + | chr6.4:52274714-52274733 | MS.gene05190:intron | 45.0% | |
| ACCGAGAATAACATCTGGGT+GGG | + | chr6.4:52272528-52272547 | MS.gene05190:intron | 45.0% | |
| ACGATGGACCCAATGTCATT+TGG | + | chr6.4:52274743-52274762 | MS.gene05190:intron | 45.0% | |
| ACTTTCCGAACTCTCCCTAT+GGG | + | chr6.4:52272415-52272434 | MS.gene05190:intron | 45.0% | |
| AGGTCACCATTGTGTTGTCT+AGG | + | chr6.4:52274782-52274801 | MS.gene05190:intron | 45.0% | |
| AGGTGAGAAAACCGTAACAG+TGG | - | chr6.4:52272312-52272331 | None:intergenic | 45.0% | |
| ATAGGTACCACAGTTCCCAT+AGG | - | chr6.4:52272433-52272452 | None:intergenic | 45.0% | |
| CATCTACTGTGTACTTGTGC+AGG | + | chr6.4:52274471-52274490 | MS.gene05190:intron | 45.0% | |
| CGTGGATGAAGATGATGTGA+AGG | + | chr6.4:52273413-52273432 | MS.gene05190:CDS | 45.0% | |
| CTGTCAACAACCCACTGTTA+CGG | + | chr6.4:52272298-52272317 | MS.gene05190:intron | 45.0% | |
| GCCACTAAGGAATTGTTTGG+TGG | + | chr6.4:52275270-52275289 | MS.gene05190:CDS | 45.0% | |
| GGTACCTATACCACGTATTC+AGG | + | chr6.4:52272444-52272463 | MS.gene05190:intron | 45.0% | |
| GGTGAGAAAACCGTAACAGT+GGG | - | chr6.4:52272311-52272330 | None:intergenic | 45.0% | |
| GGTGGACATAGCTCATTCAT+AGG | + | chr6.4:52273554-52273573 | MS.gene05190:intron | 45.0% | |
| TAGGTACCACAGTTCCCATA+GGG | - | chr6.4:52272432-52272451 | None:intergenic | 45.0% | |
| TATTTGGGTACTCAGGGAAG+AGG | - | chr6.4:52272335-52272354 | None:intergenic | 45.0% | |
| TCAGATTGTCCTTACAGGAG+CGG | - | chr6.4:52273463-52273482 | None:intergenic | 45.0% | |
| ! | AACATTCTGTAGCCTTGCCA+TGG | + | chr6.4:52274246-52274265 | MS.gene05190:intron | 45.0% |
| ! | ACACGGTGAGTAGCTCTTTT+TGG | + | chr6.4:52274541-52274560 | MS.gene05190:intron | 45.0% |
| ! | ATATGGTATCTGGAGTCAGG+TGG | - | chr6.4:52272874-52272893 | None:intergenic | 45.0% |
| ! | ATGTGGTTGCATTGGCATCA+AGG | - | chr6.4:52273624-52273643 | None:intergenic | 45.0% |
| ! | CACGGTGAGTAGCTCTTTTT+GGG | + | chr6.4:52274542-52274561 | MS.gene05190:intron | 45.0% |
| ! | GTATTCAGGTTCAACTCCCA+TGG | + | chr6.4:52272458-52272477 | MS.gene05190:intron | 45.0% |
| ! | TATCCAGGGACAGGTTGAAT+TGG | - | chr6.4:52272785-52272804 | None:intergenic | 45.0% |
| !!! | TATAGTTTTAAAATAAAAAA+TGG | + | chr6.4:52273533-52273552 | MS.gene05190:intron | 5.0% |
| AACTCTCCCTATGGGAACTG+TGG | + | chr6.4:52272423-52272442 | MS.gene05190:intron | 50.0% | |
| AAGCCAATTCAACCTGTCCC+TGG | + | chr6.4:52272779-52272798 | MS.gene05190:intron | 50.0% | |
| ACAACTGCATATCCAGGGAC+AGG | - | chr6.4:52272794-52272813 | None:intergenic | 50.0% | |
| AGAAAGGTTGCGAATGAGGG+AGG | + | chr6.4:52274872-52274891 | MS.gene05190:intron | 50.0% | |
| AGCGAGTGTTTGCCTTCCAT+GGG | - | chr6.4:52272477-52272496 | None:intergenic | 50.0% | |
| ATGCAGAGCTCATCTCACAC+AGG | + | chr6.4:52275355-52275374 | MS.gene05190:CDS | 50.0% | |
| CAATGAGCTCTTTGCGGAGA+TGG | + | chr6.4:52274713-52274732 | MS.gene05190:intron | 50.0% | |
| CACTCGCTAAAATGTCCCTG+CGG | + | chr6.4:52272489-52272508 | MS.gene05190:intron | 50.0% | |
| CACTTTCCGAACTCTCCCTA+TGG | + | chr6.4:52272414-52272433 | MS.gene05190:intron | 50.0% | |
| CAGATTGTCCTTACAGGAGC+GGG | - | chr6.4:52273462-52273481 | None:intergenic | 50.0% | |
| CAGTTCCCATAGGGAGAGTT+CGG | - | chr6.4:52272423-52272442 | None:intergenic | 50.0% | |
| CCCCACCCAGATGTTATTCT+CGG | - | chr6.4:52272532-52272551 | None:intergenic | 50.0% | |
| CCGAGAATAACATCTGGGTG+GGG | + | chr6.4:52272529-52272548 | MS.gene05190:intron | 50.0% | |
| CGTGCTTGCATGCTATCATC+AGG | + | chr6.4:52273972-52273991 | MS.gene05190:intron | 50.0% | |
| GAAAGGTTGCGAATGAGGGA+GGG | + | chr6.4:52274873-52274892 | MS.gene05190:intron | 50.0% | |
| GCAGAGAAAGAAGCCAATGC+TGG | + | chr6.4:52275596-52275615 | MS.gene05190:CDS | 50.0% | |
| GGGAGTTGAACCTGAATACG+TGG | - | chr6.4:52272457-52272476 | None:intergenic | 50.0% | |
| TAAAATGTCCCTGCGGCAGA+GGG | + | chr6.4:52272496-52272515 | MS.gene05190:intron | 50.0% | |
| TAGCGAGTGTTTGCCTTCCA+TGG | - | chr6.4:52272478-52272497 | None:intergenic | 50.0% | |
| TAGGGAGAGTTCGGAAAGTG+TGG | - | chr6.4:52272414-52272433 | None:intergenic | 50.0% | |
| TCAGGTTCAACTCCCATGGA+AGG | + | chr6.4:52272462-52272481 | MS.gene05190:intron | 50.0% | |
| ! | ACACAGGCTTCGTGCTTTTG+AGG | + | chr6.4:52275371-52275390 | MS.gene05190:CDS | 50.0% |
| ! | CGGAGATGGGACTTTTACGA+TGG | + | chr6.4:52274727-52274746 | MS.gene05190:intron | 50.0% |
| ! | TTTTCAGCCAGAGGATCCAG+TGG | - | chr6.4:52274108-52274127 | None:intergenic | 50.0% |
| !! | ACAGTGGGTTGTTGACAGGT+AGG | - | chr6.4:52272296-52272315 | None:intergenic | 50.0% |
| !! | CGTAACAGTGGGTTGTTGAC+AGG | - | chr6.4:52272300-52272319 | None:intergenic | 50.0% |
| !! | GTTTTTACTGCAGGTGCTGC+AGG | - | chr6.4:52274000-52274019 | None:intergenic | 50.0% |
| !! | TGGCGAAGTTTTTCAGCCAG+AGG | - | chr6.4:52274117-52274136 | None:intergenic | 50.0% |
| CTAAAATGTCCCTGCGGCAG+AGG | + | chr6.4:52272495-52272514 | MS.gene05190:intron | 55.0% | |
| GAATAACATCTGGGTGGGGC+TGG | + | chr6.4:52272533-52272552 | MS.gene05190:intron | 55.0% | |
| GGAAGAACCACTGGATCCTC+TGG | + | chr6.4:52274098-52274117 | MS.gene05190:CDS | 55.0% | |
| GGGTTGTTGACAGGTAGGAC+TGG | - | chr6.4:52272291-52272310 | None:intergenic | 55.0% | |
| TTGGGTACTCAGGGAAGAGG+AGG | - | chr6.4:52272332-52272351 | None:intergenic | 55.0% | |
| AAGACGAGCCCGCTCCTGTA+AGG | + | chr6.4:52273451-52273470 | MS.gene05190:intron | 60.0% | |
| GCGTCGCTGCAGTAGACCTT+TGG | + | chr6.4:52274981-52275000 | MS.gene05190:intron | 60.0% | |
| TCTTAGCCGGCAGGCATCCA+TGG | - | chr6.4:52274266-52274285 | None:intergenic | 60.0% | |
| GCCTTGCCATGGATGCCTGC+CGG | + | chr6.4:52274257-52274276 | MS.gene05190:intron | 65.0% | |
| TTCTGGCACCCTCTGCCGCA+GGG | - | chr6.4:52272507-52272526 | None:intergenic | 65.0% | |
| ! | TTTCTGGCACCCTCTGCCGC+AGG | - | chr6.4:52272508-52272527 | None:intergenic | 65.0% |
| GCCGGCAGGCATCCATGGCA+AGG | - | chr6.4:52274261-52274280 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 52272206 | 52275828 | 52272206 | ID=MS.gene05190 |
| chr6.4 | mRNA | 52272206 | 52275828 | 52272206 | ID=MS.gene05190.t1;Parent=MS.gene05190 |
| chr6.4 | exon | 52272206 | 52272221 | 52272206 | ID=MS.gene05190.t1.exon1;Parent=MS.gene05190.t1 |
| chr6.4 | CDS | 52272206 | 52272221 | 52272206 | ID=cds.MS.gene05190.t1;Parent=MS.gene05190.t1 |
| chr6.4 | exon | 52273343 | 52273467 | 52273343 | ID=MS.gene05190.t1.exon2;Parent=MS.gene05190.t1 |
| chr6.4 | CDS | 52273343 | 52273467 | 52273343 | ID=cds.MS.gene05190.t1;Parent=MS.gene05190.t1 |
| chr6.4 | exon | 52273994 | 52274142 | 52273994 | ID=MS.gene05190.t1.exon3;Parent=MS.gene05190.t1 |
| chr6.4 | CDS | 52273994 | 52274142 | 52273994 | ID=cds.MS.gene05190.t1;Parent=MS.gene05190.t1 |
| chr6.4 | exon | 52275245 | 52275392 | 52275245 | ID=MS.gene05190.t1.exon4;Parent=MS.gene05190.t1 |
| chr6.4 | CDS | 52275245 | 52275392 | 52275245 | ID=cds.MS.gene05190.t1;Parent=MS.gene05190.t1 |
| chr6.4 | exon | 52275473 | 52275632 | 52275473 | ID=MS.gene05190.t1.exon5;Parent=MS.gene05190.t1 |
| chr6.4 | CDS | 52275473 | 52275632 | 52275473 | ID=cds.MS.gene05190.t1;Parent=MS.gene05190.t1 |
| chr6.4 | exon | 52275734 | 52275828 | 52275734 | ID=MS.gene05190.t1.exon6;Parent=MS.gene05190.t1 |
| chr6.4 | CDS | 52275734 | 52275828 | 52275734 | ID=cds.MS.gene05190.t1;Parent=MS.gene05190.t1 |
| Gene Sequence |
| Protein sequence |
