Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37854.t1 | XP_003617053.2 | 95.3 | 1373 | 62 | 2 | 1 | 1372 | 1 | 1372 | 0.00E+00 | 2593.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37854.t1 | Q7G9P4 | 60.2 | 1362 | 503 | 14 | 12 | 1369 | 3 | 1329 | 0.0e+00 | 1607.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37854.t1 | G7KHG0 | 95.3 | 1373 | 62 | 2 | 1 | 1372 | 1 | 1372 | 0.0e+00 | 2593.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052011 | MS.gene37854 | -0.817754 | 2.80E-52 | -1.69E-46 |
MS.gene054183 | MS.gene37854 | 0.815939 | 7.15E-52 | -1.69E-46 |
MS.gene054719 | MS.gene37854 | 0.814025 | 1.90E-51 | -1.69E-46 |
MS.gene055539 | MS.gene37854 | 0.806511 | 7.94E-50 | -1.69E-46 |
MS.gene05553 | MS.gene37854 | 0.815562 | 8.68E-52 | -1.69E-46 |
MS.gene056723 | MS.gene37854 | 0.80817 | 3.53E-50 | -1.69E-46 |
MS.gene059420 | MS.gene37854 | 0.813826 | 2.10E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene052054 | MS.gene37854 | PPI |
MS.gene78384 | MS.gene37854 | PPI |
MS.gene37854 | MS.gene31092 | PPI |
MS.gene45551 | MS.gene37854 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37854.t1 | MTR_5g087410 | 95.339 | 1373 | 62 | 2 | 1 | 1372 | 1 | 1372 | 0.0 | 2616 |
MS.gene37854.t1 | MTR_5g087410 | 94.610 | 1243 | 65 | 2 | 1 | 1242 | 1 | 1242 | 0.0 | 2340 |
MS.gene37854.t1 | MTR_5g087390 | 78.077 | 1373 | 277 | 9 | 1 | 1369 | 1 | 1353 | 0.0 | 2205 |
MS.gene37854.t1 | MTR_2g098030 | 30.807 | 1412 | 828 | 39 | 1 | 1348 | 7 | 1333 | 1.39e-159 | 516 |
MS.gene37854.t1 | MTR_2g098030 | 30.807 | 1412 | 828 | 39 | 1 | 1348 | 3 | 1329 | 1.59e-159 | 516 |
MS.gene37854.t1 | MTR_2g098030 | 30.129 | 1321 | 776 | 37 | 91 | 1348 | 3 | 1239 | 7.75e-151 | 490 |
MS.gene37854.t1 | MTR_4g119170 | 78.049 | 41 | 8 | 1 | 968 | 1008 | 183 | 222 | 2.77e-12 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37854.t1 | AT3G43600 | 60.044 | 1369 | 486 | 19 | 11 | 1371 | 2 | 1317 | 0.0 | 1657 |
MS.gene37854.t1 | AT1G04580 | 58.613 | 1370 | 513 | 14 | 12 | 1368 | 6 | 1334 | 0.0 | 1629 |
MS.gene37854.t1 | AT2G27150 | 60.073 | 1365 | 506 | 15 | 12 | 1372 | 3 | 1332 | 0.0 | 1627 |
MS.gene37854.t1 | AT2G27150 | 60.073 | 1365 | 506 | 15 | 12 | 1372 | 3 | 1332 | 0.0 | 1627 |
MS.gene37854.t1 | AT5G20960 | 58.370 | 1374 | 538 | 17 | 8 | 1372 | 17 | 1365 | 0.0 | 1611 |
MS.gene37854.t1 | AT5G20960 | 58.370 | 1374 | 538 | 17 | 8 | 1372 | 17 | 1365 | 0.0 | 1611 |
MS.gene37854.t1 | AT2G27150 | 58.753 | 1251 | 477 | 15 | 126 | 1372 | 1 | 1216 | 0.0 | 1469 |
MS.gene37854.t1 | AT2G27150 | 58.753 | 1251 | 477 | 15 | 126 | 1372 | 1 | 1216 | 0.0 | 1469 |
MS.gene37854.t1 | AT2G27150 | 58.612 | 1196 | 457 | 14 | 12 | 1203 | 3 | 1164 | 0.0 | 1377 |
MS.gene37854.t1 | AT2G27150 | 56.932 | 1082 | 428 | 14 | 126 | 1203 | 1 | 1048 | 0.0 | 1218 |
MS.gene37854.t1 | AT4G34890 | 30.720 | 1403 | 825 | 36 | 10 | 1348 | 15 | 1334 | 2.69e-161 | 521 |
MS.gene37854.t1 | AT4G34900 | 30.478 | 1401 | 825 | 38 | 13 | 1348 | 10 | 1326 | 2.32e-154 | 502 |
MS.gene37854.t1 | AT4G34900 | 29.932 | 1323 | 779 | 37 | 91 | 1348 | 3 | 1242 | 3.70e-147 | 481 |
MS.gene37854.t1 | AT4G34900 | 28.902 | 1211 | 738 | 34 | 13 | 1175 | 10 | 1145 | 2.15e-116 | 394 |
MS.gene37854.t1 | AT1G02590 | 66.000 | 50 | 17 | 0 | 1187 | 1236 | 26 | 75 | 1.47e-17 | 79.3 |
Find 264 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCTCGGTTTGAACTCTTTC+TGG | 0.085297 | 5.3:-70258937 | MS.gene37854:CDS |
TTGAAATGGGTCAGGGTTTA+TGG | 0.139888 | 5.3:-70255578 | MS.gene37854:CDS |
AAAACCAATGGTTATTTAAA+TGG | 0.159311 | 5.3:-70257846 | MS.gene37854:CDS |
TTTGAACTCTTTCTGGAAAA+AGG | 0.162836 | 5.3:-70258930 | MS.gene37854:CDS |
GCTAACTTGTTCCATATTAA+AGG | 0.170436 | 5.3:+70255777 | None:intergenic |
GGAATGTCTGTTTCCCTCTT+TGG | 0.189245 | 5.3:-70259130 | MS.gene37854:CDS |
AGAAGGGTTGGAGGAGGTTT+TGG | 0.201063 | 5.3:-70256506 | MS.gene37854:CDS |
AACATACAGTGTCGGATTTA+AGG | 0.224137 | 5.3:-70256147 | MS.gene37854:CDS |
CCATGATAGGAGCTGTTTCC+TGG | 0.234783 | 5.3:+70253417 | None:intergenic |
GTCGAGCAACGGATCATATT+TGG | 0.251503 | 5.3:+70259318 | None:intergenic |
AATATACCATGCCTTTAATA+TGG | 0.251942 | 5.3:-70255788 | MS.gene37854:CDS |
CTCAACCCTGCTGTGGATTT+AGG | 0.252324 | 5.3:-70254770 | MS.gene37854:CDS |
AAGATACTTGAAATGGAAAA+TGG | 0.265000 | 5.3:-70253299 | MS.gene37854:CDS |
TGCCTTACACCTTGAGATAT+TGG | 0.277247 | 5.3:-70256108 | MS.gene37854:CDS |
TGCTTCAAAGACTTGCTTCC+CGG | 0.291533 | 5.3:+70257734 | None:intergenic |
AAAGTTGTTGTTAATAATAC+TGG | 0.296448 | 5.3:-70258710 | MS.gene37854:CDS |
GATACTTGTAGGTTGTCTTT+TGG | 0.300306 | 5.3:-70258089 | MS.gene37854:CDS |
GATCAATCAGGGATTGAAAT+TGG | 0.303252 | 5.3:-70258605 | MS.gene37854:CDS |
TAATGGAACTGAAAGTCTTT+TGG | 0.310177 | 5.3:-70255508 | MS.gene37854:CDS |
ATCTCAATACTATTTCTATA+TGG | 0.316951 | 5.3:-70256666 | MS.gene37854:CDS |
TCAATTCATGAAAGATTTGC+AGG | 0.318071 | 5.3:-70259187 | MS.gene37854:CDS |
GTGGGAGGATCTTATTCTTC+AGG | 0.335115 | 5.3:-70255313 | MS.gene37854:intron |
TCTTGGAGCTTCTTCTTGAT+AGG | 0.335527 | 5.3:+70255354 | None:intergenic |
TTTACTACAGGCATGGTTGC+AGG | 0.338663 | 5.3:+70253349 | None:intergenic |
TGGTTGGTTGCAGGTGGTTG+TGG | 0.339600 | 5.3:-70259361 | MS.gene37854:intron |
AGAGGAGCTTCAATGTTTAT+TGG | 0.341442 | 5.3:-70258762 | MS.gene37854:CDS |
CATGTTGAGAAGTTCTTATC+AGG | 0.342829 | 5.3:-70258032 | MS.gene37854:CDS |
TACTCAGAAACTTGCAGATA+TGG | 0.346961 | 5.3:-70257006 | MS.gene37854:CDS |
GGAGCTTTCATACAGGGGTT+AGG | 0.349353 | 5.3:-70254312 | MS.gene37854:CDS |
TCAGAAGCTATAAACAAATC+AGG | 0.351547 | 5.3:+70258815 | None:intergenic |
ACACTGTATGTTATCTTCAT+TGG | 0.359016 | 5.3:+70256158 | None:intergenic |
TCCGTTAAGTACATCAATTA+TGG | 0.359698 | 5.3:-70254992 | MS.gene37854:CDS |
TATAAAACTTGGGCGAGAAT+TGG | 0.361814 | 5.3:-70257427 | MS.gene37854:CDS |
TGAAACAAACCTTGATGGTT+TGG | 0.369420 | 5.3:-70254268 | MS.gene37854:CDS |
AGCGCACCAGCTATGTTGTT+TGG | 0.371177 | 5.3:+70256047 | None:intergenic |
GGTGCTGCGCTACAAGCTTC+AGG | 0.373464 | 5.3:-70257669 | MS.gene37854:intron |
GCAATCTCTTCGGCAAATAA+AGG | 0.375692 | 5.3:+70257315 | None:intergenic |
CAAATCTTTCATGAATTGAA+TGG | 0.381723 | 5.3:+70259191 | None:intergenic |
TGATAGAACTTGTTTGCTCT+TGG | 0.382875 | 5.3:+70255337 | None:intergenic |
TGGAGGAATTGAAATGGGTC+AGG | 0.386950 | 5.3:-70255586 | MS.gene37854:CDS |
CGGGAATGTCTTTACTTGTA+AGG | 0.388052 | 5.3:+70257382 | None:intergenic |
ACTTCTTGCTGTGGATTCAA+TGG | 0.388300 | 5.3:-70258378 | MS.gene37854:CDS |
GAGTATGAAACAAACCTTGA+TGG | 0.394038 | 5.3:-70254273 | MS.gene37854:CDS |
CTCAGGAGAATTTCTCTTGT+CGG | 0.399628 | 5.3:+70259093 | None:intergenic |
GAGACACCGGGTGGTGGCTC+AGG | 0.401035 | 5.3:+70259076 | None:intergenic |
CATCTAAGTTGCTCCATGAT+AGG | 0.401591 | 5.3:+70253404 | None:intergenic |
GCCATAATTGATGTACTTAA+CGG | 0.404462 | 5.3:+70254991 | None:intergenic |
GGCATTATTGCGCTAACATC+GGG | 0.408095 | 5.3:+70256068 | None:intergenic |
AGTTTAATAGACTTAACATT+TGG | 0.411940 | 5.3:-70255713 | MS.gene37854:CDS |
TCGAAAGACAGATATGATAA+TGG | 0.412341 | 5.3:-70256195 | MS.gene37854:CDS |
TGTTGTTAATAATACTGGTA+TGG | 0.413382 | 5.3:-70258705 | MS.gene37854:CDS |
TTATCTTTGTTTCATTGGCA+TGG | 0.415973 | 5.3:+70258732 | None:intergenic |
GGCGAGCCAGTCACAAAATC+TGG | 0.417282 | 5.3:-70257690 | MS.gene37854:CDS |
AAAATCAAAAGGGATCAATC+AGG | 0.418309 | 5.3:-70258617 | MS.gene37854:CDS |
CAAATGACTGCGTTCGCGCT+TGG | 0.424368 | 5.3:-70255543 | MS.gene37854:CDS |
AATTGCATCTTGCAGATTGA+AGG | 0.424514 | 5.3:-70254333 | MS.gene37854:intron |
TCAGATTCAGCATTTCAGTT+GGG | 0.426549 | 5.3:-70253376 | MS.gene37854:CDS |
GAATAAACCTACTAGTTTAG+AGG | 0.426584 | 5.3:-70258780 | MS.gene37854:CDS |
GTTTGAATGGCTTGCATTGG+AGG | 0.429814 | 5.3:-70258333 | MS.gene37854:CDS |
GAGCTTTCATACAGGGGTTA+GGG | 0.432222 | 5.3:-70254311 | MS.gene37854:CDS |
TTGTACAAAGATACTTGAAA+TGG | 0.433052 | 5.3:-70253306 | MS.gene37854:CDS |
CCCGATGGTGGGGAGAATCT+TGG | 0.444224 | 5.3:-70257363 | MS.gene37854:CDS |
GGTTCTGTTGTTGTTGAAGT+TGG | 0.445396 | 5.3:-70255606 | MS.gene37854:CDS |
AGCAAACAAGTTCTATCAAG+TGG | 0.446618 | 5.3:-70255332 | MS.gene37854:CDS |
AGTGGTTGACGGATCAACTT+TGG | 0.448442 | 5.3:+70260130 | None:intergenic |
CAAATTGGTGATGTATCAAA+AGG | 0.449614 | 5.3:-70256861 | MS.gene37854:CDS |
TTTCCTACTTTATTGTCGTC+CGG | 0.452444 | 5.3:-70257753 | MS.gene37854:CDS |
TGAAGCTCCTCTAAACTAGT+AGG | 0.453256 | 5.3:+70258773 | None:intergenic |
AGAGTAATTACAAGAAGGGT+TGG | 0.459243 | 5.3:-70256518 | MS.gene37854:CDS |
GTAATTACAAGAAGGGTTGG+AGG | 0.460905 | 5.3:-70256515 | MS.gene37854:CDS |
GAACCATGATAGATACTTGT+AGG | 0.462124 | 5.3:-70258100 | MS.gene37854:CDS |
AAGCAAGTTGTGCAGCAGTT+AGG | 0.464928 | 5.3:-70255410 | MS.gene37854:CDS |
GATAAGTATATTGATATAAG+TGG | 0.465422 | 5.3:-70258656 | MS.gene37854:CDS |
CTTAACATTTGGAAGAAAAG+AGG | 0.468836 | 5.3:-70255702 | MS.gene37854:CDS |
TAGCTTCTGAGAAACATAGT+TGG | 0.471882 | 5.3:-70258802 | MS.gene37854:CDS |
CAACAGCAGCTTCAACACTT+AGG | 0.472257 | 5.3:+70256931 | None:intergenic |
TGTTCAGGTGTCTCCTTGCA+AGG | 0.472503 | 5.3:-70258132 | MS.gene37854:CDS |
AGTTATGCAATTGTCTTCAT+CGG | 0.474873 | 5.3:+70256619 | None:intergenic |
CCCCTCACTGCAGATCTACT+AGG | 0.475150 | 5.3:+70255966 | None:intergenic |
TATAGTAGAATGTGCATACT+CGG | 0.475558 | 5.3:+70256574 | None:intergenic |
GTTATGCAATTGTCTTCATC+GGG | 0.476854 | 5.3:+70256620 | None:intergenic |
AGTGTCGGATTTAAGGATAA+TGG | 0.477311 | 5.3:-70256140 | MS.gene37854:CDS |
TTTGTGACTGGCTCGCCAAT+CGG | 0.477819 | 5.3:+70257696 | None:intergenic |
ACTCTATAAAAGCGAATCTT+CGG | 0.478509 | 5.3:-70258246 | MS.gene37854:CDS |
TGCAACCATGCCTGTAGTAA+AGG | 0.479131 | 5.3:-70253347 | MS.gene37854:CDS |
TGAAGTTGGAGGAATTGAAA+TGG | 0.479454 | 5.3:-70255592 | MS.gene37854:CDS |
TGGAGACCGTCTTGCATTTG+TGG | 0.479928 | 5.3:-70257283 | MS.gene37854:intron |
CTTGGAGCAAAGAGTAGATT+CGG | 0.480063 | 5.3:-70257345 | MS.gene37854:CDS |
TGTTAGAGTAATTACAAGAA+GGG | 0.480546 | 5.3:-70256522 | MS.gene37854:CDS |
ACACTACTTTGCAGCATACA+TGG | 0.480941 | 5.3:-70259262 | MS.gene37854:CDS |
GATTGAAGGAGCTTTCATAC+AGG | 0.481294 | 5.3:-70254319 | MS.gene37854:CDS |
CCAATGACTTCCTTTACTAC+AGG | 0.483740 | 5.3:+70253337 | None:intergenic |
ACCTGTCCTAAATCCACAGC+AGG | 0.489394 | 5.3:+70254764 | None:intergenic |
AAAGAGGGAAACAGACATTC+CGG | 0.491258 | 5.3:+70259132 | None:intergenic |
TCCTAGTAGATCTGCAGTGA+GGG | 0.493092 | 5.3:-70255967 | MS.gene37854:CDS |
CCAAGATTCTCCCCACCATC+GGG | 0.493500 | 5.3:+70257363 | None:intergenic |
GTTGTTAATAATACTGGTAT+GGG | 0.493709 | 5.3:-70258704 | MS.gene37854:CDS |
CCAGGAAACAGCTCCTATCA+TGG | 0.494053 | 5.3:-70253417 | MS.gene37854:CDS |
GCAAAAGAATAAGTTTCCTT+CGG | 0.494321 | 5.3:-70258414 | MS.gene37854:CDS |
AAGAGGGAAACAGACATTCC+GGG | 0.494887 | 5.3:+70259133 | None:intergenic |
CGTGCTTCTCCTCGACCGCT+TGG | 0.495712 | 5.3:-70258188 | MS.gene37854:CDS |
GAGGAATAGTGTCTATTGTT+GGG | 0.496222 | 5.3:+70254214 | None:intergenic |
TGAGGAATAGTGTCTATTGT+TGG | 0.496945 | 5.3:+70254213 | None:intergenic |
CAGATTCAGCATTTCAGTTG+GGG | 0.497145 | 5.3:-70253375 | MS.gene37854:CDS |
GGGAATCTTTGTCGCTGCAC+TGG | 0.499285 | 5.3:-70259016 | MS.gene37854:CDS |
TCTGTTGTTGTTGAAGTTGG+AGG | 0.499663 | 5.3:-70255603 | MS.gene37854:CDS |
CTTCATTGGATGTCTTCCTC+CGG | 0.500547 | 5.3:+70256172 | None:intergenic |
ATTACAAGAAGGGTTGGAGG+AGG | 0.500699 | 5.3:-70256512 | MS.gene37854:CDS |
TCACCAACAAATTGCCTACA+TGG | 0.501168 | 5.3:-70257492 | MS.gene37854:CDS |
TGCTTCTGATGTAGTGCTCC+CGG | 0.504638 | 5.3:+70255428 | None:intergenic |
AAAATAACAAGTATAAAACT+TGG | 0.505482 | 5.3:-70257438 | MS.gene37854:CDS |
GACCAATATCTCAAGGTGTA+AGG | 0.505776 | 5.3:+70256106 | None:intergenic |
AGCGCGTTTCCAAGCGGTCG+AGG | 0.505779 | 5.3:+70258179 | None:intergenic |
GAATTTCTTAAGACTTGTGT+AGG | 0.507795 | 5.3:+70255839 | None:intergenic |
TCATGGAGCAACTTAGATGA+TGG | 0.508647 | 5.3:-70253400 | MS.gene37854:CDS |
CTTGGTACAATTCAGTGTAA+TGG | 0.508656 | 5.3:-70255525 | MS.gene37854:CDS |
CCTGTAGTAAAGGAAGTCAT+TGG | 0.508900 | 5.3:-70253337 | MS.gene37854:CDS |
AACTCAAGCAAAGTGGTTGA+CGG | 0.509030 | 5.3:+70260119 | None:intergenic |
GATACCTTGAGTATGATTCA+AGG | 0.509496 | 5.3:-70255462 | MS.gene37854:CDS |
AATGAAACTCAGATAAAACT+TGG | 0.510179 | 5.3:-70256689 | MS.gene37854:intron |
TTCCTACTTTATTGTCGTCC+GGG | 0.512455 | 5.3:-70257752 | MS.gene37854:CDS |
ATGTCGGAAGCCTCGGTCGA+AGG | 0.512769 | 5.3:+70257810 | None:intergenic |
GTTGGTGATGCTCACTGTTG+AGG | 0.512791 | 5.3:+70254172 | None:intergenic |
TATTTATAGTGCAAAACCAT+TGG | 0.514867 | 5.3:-70257463 | MS.gene37854:CDS |
ATATCCATTTAAATAACCAT+TGG | 0.515425 | 5.3:+70257842 | None:intergenic |
GTTAAACTCGGTTGTGGTGA+AGG | 0.515849 | 5.3:-70260068 | MS.gene37854:intron |
CACAGAGTTCTCTCCTCAAA+GGG | 0.517487 | 5.3:-70254150 | MS.gene37854:intron |
GAAGTTGGAGGAATTGAAAT+GGG | 0.520541 | 5.3:-70255591 | MS.gene37854:CDS |
GACTTCCTTTACTACAGGCA+TGG | 0.521295 | 5.3:+70253342 | None:intergenic |
TACTCATTTGCCTTCGACCG+AGG | 0.523022 | 5.3:-70257820 | MS.gene37854:CDS |
TCCAAGATTCTCCCCACCAT+CGG | 0.524071 | 5.3:+70257362 | None:intergenic |
ATCAGATTCAGCATTTCAGT+TGG | 0.524166 | 5.3:-70253377 | MS.gene37854:CDS |
TGTAGGCAATTTGTTGGTGA+TGG | 0.524596 | 5.3:+70257495 | None:intergenic |
CTTGCAAAACCAAACCATCA+AGG | 0.524719 | 5.3:+70254259 | None:intergenic |
AGCTACACTTTCGATGGAAG+TGG | 0.525447 | 5.3:-70255889 | MS.gene37854:CDS |
ATTTCAACATTGAACTGTTG+AGG | 0.525678 | 5.3:+70254195 | None:intergenic |
TTACTACAGGCATGGTTGCA+GGG | 0.527766 | 5.3:+70253350 | None:intergenic |
ATGTTAGAGTAATTACAAGA+AGG | 0.528061 | 5.3:-70256523 | MS.gene37854:CDS |
AAGTGTTAGCAACCTGTATG+AGG | 0.528216 | 5.3:-70258000 | MS.gene37854:CDS |
CCCTGCTGTGGATTTAGGAC+AGG | 0.528247 | 5.3:-70254765 | MS.gene37854:intron |
TGACTGGTGCAAAGTTTGAA+TGG | 0.530477 | 5.3:-70258346 | MS.gene37854:CDS |
ATAGTAGAATGTGCATACTC+GGG | 0.532417 | 5.3:+70256575 | None:intergenic |
CAATGCGGTTTCTGTACTCC+CGG | 0.532666 | 5.3:-70259151 | MS.gene37854:CDS |
AACACATCTAGCAATCTCTT+CGG | 0.533493 | 5.3:+70257305 | None:intergenic |
CTCGCCAATCGGATTATACT+CGG | 0.534737 | 5.3:+70257707 | None:intergenic |
TATAGGTGAGGCTGTATATG+TGG | 0.535937 | 5.3:-70257526 | MS.gene37854:intron |
GCAAGTTGATAGCCTCATAC+AGG | 0.536058 | 5.3:+70257988 | None:intergenic |
GCTTCAACACTTAGGATAGG+TGG | 0.536240 | 5.3:+70256939 | None:intergenic |
AATGATCCCTGCGTGTCACC+TGG | 0.536476 | 5.3:+70255942 | None:intergenic |
GGAAAATGGACAACAAGTAA+AGG | 0.537435 | 5.3:-70253285 | None:intergenic |
CTTGTTCCATATTAAAGGCA+TGG | 0.538302 | 5.3:+70255782 | None:intergenic |
GGGAAGCAAGTCTTTGAAGC+AGG | 0.538409 | 5.3:-70257732 | MS.gene37854:CDS |
GTACTTAACGGAATTACTAC+CGG | 0.539640 | 5.3:+70255003 | None:intergenic |
GGAGGAATTGAAATGGGTCA+GGG | 0.541924 | 5.3:-70255585 | MS.gene37854:CDS |
AAGAGTGTTAAACTCGGTTG+TGG | 0.542468 | 5.3:-70260074 | MS.gene37854:CDS |
TGCAGGCATCAGCAATTGGT+CGG | 0.544147 | 5.3:+70258990 | None:intergenic |
ATACCTTGAGTATGATTCAA+GGG | 0.546156 | 5.3:-70255461 | MS.gene37854:CDS |
CATAAAAGAGAATCAGAAGC+AGG | 0.547205 | 5.3:-70257790 | MS.gene37854:CDS |
TGGCATTATTGCGCTAACAT+CGG | 0.547988 | 5.3:+70256067 | None:intergenic |
TATAAATATATGCTCCATGT+AGG | 0.548342 | 5.3:+70257478 | None:intergenic |
TTGAGATATTGGTCAACGCT+GGG | 0.548841 | 5.3:-70256097 | MS.gene37854:CDS |
GCTCCATGTAGGCAATTTGT+TGG | 0.550732 | 5.3:+70257489 | None:intergenic |
TCTACTATAGCAAGATGCCT+TGG | 0.550881 | 5.3:-70256560 | MS.gene37854:CDS |
GTAAAGACATTCCCGATGGT+GGG | 0.554298 | 5.3:-70257374 | MS.gene37854:CDS |
AACTGAAGCTGCTAGAAGCA+AGG | 0.554927 | 5.3:+70253471 | None:intergenic |
TTTCTTGAGAGACCACCGTT+AGG | 0.556346 | 5.3:-70258308 | MS.gene37854:CDS |
GTAACAACAAGTGAAGGCAT+TGG | 0.559162 | 5.3:-70259232 | MS.gene37854:CDS |
TCTTCGGAGACAAGAAGCAC+TGG | 0.559547 | 5.3:-70258230 | MS.gene37854:CDS |
TTCAACAACAACAGAACCAT+CGG | 0.560103 | 5.3:+70255611 | None:intergenic |
ATAATGCCAAACAACATAGC+TGG | 0.561669 | 5.3:-70256053 | MS.gene37854:CDS |
GATGTTGATATGGAGGATCT+CGG | 0.561827 | 5.3:-70258953 | MS.gene37854:CDS |
AGTAAAGACATTCCCGATGG+TGG | 0.563406 | 5.3:-70257375 | MS.gene37854:CDS |
AAAGTTTGAATGGCTTGCAT+TGG | 0.563510 | 5.3:-70258336 | MS.gene37854:CDS |
TCCTCTACTCTGTCGAGCAA+CGG | 0.563980 | 5.3:+70259307 | None:intergenic |
AGAAACCGCATTGCGAAGCA+TGG | 0.564320 | 5.3:+70259161 | None:intergenic |
ATTGAAGGAGCTTTCATACA+GGG | 0.565150 | 5.3:-70254318 | MS.gene37854:CDS |
AATTCTCCTGAGCCACCACC+CGG | 0.565247 | 5.3:-70259082 | MS.gene37854:CDS |
CAACCTACAAGTATCTATCA+TGG | 0.566537 | 5.3:+70258097 | None:intergenic |
AAATTCTATGATAATTCTTG+TGG | 0.568554 | 5.3:-70255822 | MS.gene37854:CDS |
TGTTGCAGCTACACTTTCGA+TGG | 0.570023 | 5.3:-70255895 | MS.gene37854:CDS |
ACACAGAGTTCTCTCCTCAA+AGG | 0.570443 | 5.3:-70254151 | MS.gene37854:CDS |
CATATGAGCAAAGTTGCGAC+TGG | 0.571603 | 5.3:-70258482 | MS.gene37854:CDS |
GAAGAGATTGCTAGATGTGT+TGG | 0.572808 | 5.3:-70257303 | MS.gene37854:CDS |
AGTTACTATACTTCTTGCTG+TGG | 0.573276 | 5.3:-70258387 | MS.gene37854:CDS |
TGCAGCTGATGTTGATATGG+AGG | 0.573289 | 5.3:-70258960 | MS.gene37854:CDS |
AAGACAGATATGATAATGGC+CGG | 0.573521 | 5.3:-70256191 | MS.gene37854:CDS |
GGCATTGGAAACAGTAAACA+AGG | 0.580439 | 5.3:-70259217 | MS.gene37854:CDS |
TCTCCTTGCAAGGATACTGA+TGG | 0.580536 | 5.3:-70258122 | MS.gene37854:CDS |
TAAAGACATTCCCGATGGTG+GGG | 0.581442 | 5.3:-70257373 | MS.gene37854:CDS |
AAGAGGAATATCTCGAGTAC+CGG | 0.582902 | 5.3:-70255685 | MS.gene37854:CDS |
GTGGAAATAGATCTTCTGAC+AGG | 0.583841 | 5.3:-70254842 | MS.gene37854:CDS |
TCAATGGTTCACATAATGAC+TGG | 0.584244 | 5.3:-70258362 | MS.gene37854:CDS |
TTGAGGAGAGAACTCTGTGT+TGG | 0.585612 | 5.3:+70254154 | None:intergenic |
AAATCAAAAGGGATCAATCA+GGG | 0.587834 | 5.3:-70258616 | MS.gene37854:CDS |
GATCAGCTGTAAAAGAAGCC+AGG | 0.587903 | 5.3:-70253435 | MS.gene37854:CDS |
CTTCAACACTTAGGATAGGT+GGG | 0.589169 | 5.3:+70256940 | None:intergenic |
ACAAAGTCTCAACCCTGCTG+TGG | 0.589598 | 5.3:-70254777 | MS.gene37854:CDS |
AAATAACAAGTATAAAACTT+GGG | 0.592067 | 5.3:-70257437 | MS.gene37854:CDS |
AACTGACAGCTAAACTCGAA+AGG | 0.592575 | 5.3:+70257913 | None:intergenic |
ATTCGGAACACGGCTAGTGT+AGG | 0.592880 | 5.3:-70258455 | MS.gene37854:CDS |
ATTGACAAGAGCGCCAAAGA+GGG | 0.593036 | 5.3:+70259117 | None:intergenic |
CGGAACACGGCTAGTGTAGG+TGG | 0.595009 | 5.3:-70258452 | MS.gene37854:CDS |
CAAGATGAAACCTCGACACA+TGG | 0.595318 | 5.3:-70257939 | MS.gene37854:CDS |
CACTGATTGAAAGTCCTGCA+AGG | 0.595946 | 5.3:-70257869 | MS.gene37854:CDS |
TCACAAGATTGTTTCTGCTG+AGG | 0.599599 | 5.3:-70256823 | MS.gene37854:intron |
CTTGAGATATTGGTCAACGC+TGG | 0.600176 | 5.3:-70256098 | MS.gene37854:CDS |
TACTTAACGGAATTACTACC+GGG | 0.602026 | 5.3:+70255004 | None:intergenic |
ATTGGAACTTGATGCAGTGA+GGG | 0.603274 | 5.3:-70257409 | MS.gene37854:CDS |
TGTGTCGAGGTTTCATCTTG+AGG | 0.603815 | 5.3:+70257942 | None:intergenic |
CGGTCGAGGAGAAGCACGGT+AGG | 0.604039 | 5.3:+70258193 | None:intergenic |
CAGGGATCATTCATCGCCGA+AGG | 0.604188 | 5.3:-70255930 | MS.gene37854:CDS |
GGCACCGAGTATAATCCGAT+TGG | 0.607478 | 5.3:-70257711 | MS.gene37854:CDS |
ACAGATATTATTTATGACTG+TGG | 0.608611 | 5.3:-70254800 | MS.gene37854:CDS |
TGTAGGTGGCAATCTCGTGA+TGG | 0.609830 | 5.3:-70258438 | MS.gene37854:CDS |
GCAGCTTCAACACTTAGGAT+AGG | 0.615611 | 5.3:+70256936 | None:intergenic |
AAAGGCATGGTATATTCAAG+TGG | 0.616955 | 5.3:+70255795 | None:intergenic |
AGATTCAGCATTTCAGTTGG+GGG | 0.618333 | 5.3:-70253374 | MS.gene37854:CDS |
CAGCGTTGACCAATATCTCA+AGG | 0.619845 | 5.3:+70256099 | None:intergenic |
ACTGAAGCTGCTAGAAGCAA+GGG | 0.621006 | 5.3:+70253472 | None:intergenic |
TACCTTGAGTATGATTCAAG+GGG | 0.621896 | 5.3:-70255460 | MS.gene37854:CDS |
AGTATAGTAACTATATCCGA+AGG | 0.623016 | 5.3:+70258398 | None:intergenic |
TGGTGATGTATCAAAAGGAA+TGG | 0.624656 | 5.3:-70256856 | MS.gene37854:CDS |
TAAGAAAGCGCGTTTCCAAG+CGG | 0.625443 | 5.3:+70258173 | None:intergenic |
GCAAACAAGTTCTATCAAGT+GGG | 0.627419 | 5.3:-70255331 | MS.gene37854:CDS |
TTGAAGGAGCTTTCATACAG+GGG | 0.629840 | 5.3:-70254317 | MS.gene37854:CDS |
TCCGTTGCTCGACAGAGTAG+AGG | 0.630138 | 5.3:-70259308 | MS.gene37854:CDS |
TTCCCGGACGACAATAAAGT+AGG | 0.631349 | 5.3:+70257750 | None:intergenic |
GTTCCATCAGTATCCTTGCA+AGG | 0.631683 | 5.3:+70258119 | None:intergenic |
GAAGCTGCTAGAAGCAAGGG+TGG | 0.633414 | 5.3:+70253475 | None:intergenic |
AGGGATTGAAATTGGAGCAG+CGG | 0.634981 | 5.3:-70258597 | MS.gene37854:CDS |
CCTAGTAGATCTGCAGTGAG+GGG | 0.636496 | 5.3:-70255966 | MS.gene37854:CDS |
CTTAGTCTAAGACCAACTCC+AGG | 0.636986 | 5.3:-70255651 | MS.gene37854:CDS |
CAATTCAAGAGTGTTAAACT+CGG | 0.637477 | 5.3:-70260080 | MS.gene37854:CDS |
GGGTCAGGGTTTATGGACAA+AGG | 0.638534 | 5.3:-70255571 | MS.gene37854:CDS |
TTGTGATCACGATCGTATCG+AGG | 0.638841 | 5.3:+70258875 | None:intergenic |
TTATGGCGCTGCAGTTAGTG+AGG | 0.639556 | 5.3:-70254975 | MS.gene37854:intron |
ACGTAAGAACTCAAGCAAAG+TGG | 0.639962 | 5.3:+70260112 | None:intergenic |
AATTGGAACTTGATGCAGTG+AGG | 0.642361 | 5.3:-70257410 | MS.gene37854:CDS |
TAGTGTGAGGCAAGAGCTCG+CGG | 0.644034 | 5.3:+70259279 | None:intergenic |
TGTTCAGTAACAACAAGTGA+AGG | 0.644430 | 5.3:-70259238 | MS.gene37854:CDS |
GGATTCCATGCTTCGCAATG+CGG | 0.645234 | 5.3:-70259166 | MS.gene37854:CDS |
CATTGACAAGAGCGCCAAAG+AGG | 0.645264 | 5.3:+70259116 | None:intergenic |
TTCATCGGGTACAGCGAGCG+CGG | 0.646281 | 5.3:+70256634 | None:intergenic |
AGCACACTTTCAAAACCTAA+CGG | 0.648249 | 5.3:+70258293 | None:intergenic |
AACAAGTTCTATCAAGTGGG+AGG | 0.649091 | 5.3:-70255328 | MS.gene37854:CDS |
CTAGTAGATCTGCAGTGAGG+GGG | 0.651811 | 5.3:-70255965 | MS.gene37854:CDS |
TAGTAGAATGTGCATACTCG+GGG | 0.656429 | 5.3:+70256576 | None:intergenic |
ATCCTAGTAGATCTGCAGTG+AGG | 0.657711 | 5.3:-70255968 | MS.gene37854:CDS |
CAAGCGGTCGAGGAGAAGCA+CGG | 0.658870 | 5.3:+70258189 | None:intergenic |
AGTCCTGCAAGGAAAACCAA+TGG | 0.663028 | 5.3:-70257858 | MS.gene37854:CDS |
TTCATCTTGAGGTGTAATAG+CGG | 0.666785 | 5.3:+70257953 | None:intergenic |
ATGAAGATAACATACAGTGT+CGG | 0.668821 | 5.3:-70256155 | MS.gene37854:CDS |
AACTCACCACAAATGCAAGA+CGG | 0.675674 | 5.3:+70257277 | None:intergenic |
AAGCACGGTAGGTGTCGAAG+AGG | 0.677790 | 5.3:+70258204 | None:intergenic |
GGATATTACAAAGATAAACA+AGG | 0.678422 | 5.3:-70258683 | MS.gene37854:CDS |
CGAAAGGTAACCATGTGTCG+AGG | 0.684226 | 5.3:+70257929 | None:intergenic |
ACAAGTAAAGACATTCCCGA+TGG | 0.691237 | 5.3:-70257378 | MS.gene37854:CDS |
AGACTAAGCTCATACAACAC+CGG | 0.692405 | 5.3:+70255666 | None:intergenic |
ACAGATATGATAATGGCCGG+AGG | 0.700168 | 5.3:-70256188 | MS.gene37854:CDS |
CCTGTCCTAAATCCACAGCA+GGG | 0.710740 | 5.3:+70254765 | None:intergenic |
ACCTTGAGTATGATTCAAGG+GGG | 0.715581 | 5.3:-70255459 | MS.gene37854:CDS |
AAGACTGTAATCAACAACAG+AGG | 0.724599 | 5.3:+70256974 | None:intergenic |
ACACTTTCAAAACCTAACGG+TGG | 0.726815 | 5.3:+70258296 | None:intergenic |
GTATGCTGCAAAGTAGTGTG+AGG | 0.774133 | 5.3:+70259266 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 70253288 | 70260222 | 70253288 | ID=MS.gene37854 |
chr5.3 | mRNA | 70253288 | 70260222 | 70253288 | ID=MS.gene37854.t1;Parent=MS.gene37854 |
chr5.3 | exon | 70260069 | 70260222 | 70260069 | ID=MS.gene37854.t1.exon1;Parent=MS.gene37854.t1 |
chr5.3 | CDS | 70260069 | 70260222 | 70260069 | ID=cds.MS.gene37854.t1;Parent=MS.gene37854.t1 |
chr5.3 | exon | 70257670 | 70259370 | 70257670 | ID=MS.gene37854.t1.exon2;Parent=MS.gene37854.t1 |
chr5.3 | CDS | 70257670 | 70259370 | 70257670 | ID=cds.MS.gene37854.t1;Parent=MS.gene37854.t1 |
chr5.3 | exon | 70257284 | 70257543 | 70257284 | ID=MS.gene37854.t1.exon3;Parent=MS.gene37854.t1 |
chr5.3 | CDS | 70257284 | 70257543 | 70257284 | ID=cds.MS.gene37854.t1;Parent=MS.gene37854.t1 |
chr5.3 | exon | 70256824 | 70257036 | 70256824 | ID=MS.gene37854.t1.exon4;Parent=MS.gene37854.t1 |
chr5.3 | CDS | 70256824 | 70257036 | 70256824 | ID=cds.MS.gene37854.t1;Parent=MS.gene37854.t1 |
chr5.3 | exon | 70256481 | 70256699 | 70256481 | ID=MS.gene37854.t1.exon5;Parent=MS.gene37854.t1 |
chr5.3 | CDS | 70256481 | 70256699 | 70256481 | ID=cds.MS.gene37854.t1;Parent=MS.gene37854.t1 |
chr5.3 | exon | 70255314 | 70256279 | 70255314 | ID=MS.gene37854.t1.exon6;Parent=MS.gene37854.t1 |
chr5.3 | CDS | 70255314 | 70256279 | 70255314 | ID=cds.MS.gene37854.t1;Parent=MS.gene37854.t1 |
chr5.3 | exon | 70254976 | 70255071 | 70254976 | ID=MS.gene37854.t1.exon7;Parent=MS.gene37854.t1 |
chr5.3 | CDS | 70254976 | 70255071 | 70254976 | ID=cds.MS.gene37854.t1;Parent=MS.gene37854.t1 |
chr5.3 | exon | 70254766 | 70254864 | 70254766 | ID=MS.gene37854.t1.exon8;Parent=MS.gene37854.t1 |
chr5.3 | CDS | 70254766 | 70254864 | 70254766 | ID=cds.MS.gene37854.t1;Parent=MS.gene37854.t1 |
chr5.3 | exon | 70254151 | 70254340 | 70254151 | ID=MS.gene37854.t1.exon9;Parent=MS.gene37854.t1 |
chr5.3 | CDS | 70254151 | 70254340 | 70254151 | ID=cds.MS.gene37854.t1;Parent=MS.gene37854.t1 |
chr5.3 | exon | 70253288 | 70253508 | 70253288 | ID=MS.gene37854.t1.exon10;Parent=MS.gene37854.t1 |
chr5.3 | CDS | 70253288 | 70253508 | 70253288 | ID=cds.MS.gene37854.t1;Parent=MS.gene37854.t1 |
Gene Sequence |
Protein sequence |