AlfalfaGEDB | MS.gene05553

M. sativa cultivar XinJiangDaYe / MS.gene05553

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05553.t1	XP_024642050.1	95.7	375	16	0	1	375	77	451	1.10E-202	715.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05553.t1	I3T6N1	95.7	375	16	0	1	375	77	451	8.2e-203	715.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene05553	0.821219	4.53E-53	-1.69E-46
MS.gene049151	MS.gene05553	0.803277	3.76E-49	-1.69E-46
MS.gene049153	MS.gene05553	0.831266	1.84E-55	-1.69E-46
MS.gene049170	MS.gene05553	0.822965	1.79E-53	-1.69E-46
MS.gene049346	MS.gene05553	0.81733	3.49E-52	-1.69E-46
MS.gene049378	MS.gene05553	0.80472	1.89E-49	-1.69E-46
MS.gene049758	MS.gene05553	0.814491	1.50E-51	-1.69E-46
MS.gene049910	MS.gene05553	0.839879	1.22E-57	-1.69E-46
MS.gene049993	MS.gene05553	0.815101	1.10E-51	-1.69E-46
MS.gene050060	MS.gene05553	0.83	3.76E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05553.t1	MTR_6g088460	95.710	373	16	0	1	373	77	449	0.0	737

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05553.t1	AT5G19540	70.185	379	109	3	1	375	80	458	0.0	556
MS.gene05553.t1	AT5G19540	70.185	379	109	3	1	375	80	458	0.0	556

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Find 85 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCCAACAAGCGGCAT+AGG	0.495123	6.2:+85226543	None:intergenic
AAACGCTTCCGATGAGAAAA+AGG	0.312911	6.2:+85226526	None:intergenic
AAAGGCTTCAAAAGAGACCA+AGG	0.625052	6.2:+85229620	None:intergenic
AAAGGGATTGATGGTTCTAC+TGG	0.424242	6.2:-85229683	MS.gene05553:CDS
AACATACCGAAGAATTTCTG+TGG	0.646117	6.2:+85225439	None:intergenic
AACTCAAAACCTGGAGTAAT+TGG	0.256723	6.2:+85226791	None:intergenic
AAGACAGTGGCTAGGGCTTC+AGG	0.299667	6.2:-85225581	MS.gene05553:CDS
AAGATTGCCATACTTTACGG+GGG	0.703694	6.2:-85225731	MS.gene05553:CDS
AATAAGATTGCCATACTTTA+CGG	0.263181	6.2:-85225734	MS.gene05553:CDS
AATGTCTGATAACGGTTCAA+CGG	0.600103	6.2:+85225554	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTAGCAACTCAAAACC+TGG	+	chr6.2:85228346-85228365	None:intergenic	30.0%
AATACCTGCTCATCAAAATT+AGG	+	chr6.2:85228061-85228080	None:intergenic	30.0%
ACTTCACTTAACTTCTTCAA+TGG	+	chr6.2:85227751-85227770	None:intergenic	30.0%
AGACAATACATACTCTTCAT+CGG	+	chr6.2:85226260-85226279	None:intergenic	30.0%
ATAAGATTGCCATACTTTAC+GGG	-	chr6.2:85229392-85229411	MS.gene05553:intron	30.0%
ATCCAACAAAAGAAATGGAT+AGG	+	chr6.2:85226827-85226846	None:intergenic	30.0%
ATGTTACCACAGAAATTCTT+CGG	-	chr6.2:85229680-85229699	MS.gene05553:CDS	30.0%
ATTATCATCCTGACATTCAA+CGG	-	chr6.2:85227314-85227333	MS.gene05553:intron	30.0%
GAAACAGCCTATAACTAATA+AGG	+	chr6.2:85225821-85225840	None:intergenic	30.0%
GAGGAGAAATCTGTTATAAT+TGG	-	chr6.2:85229313-85229332	MS.gene05553:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	85225430	85229717	85225430	ID=MS.gene05553
chr6.2	mRNA	85225430	85229717	85225430	ID=MS.gene05553.t1;Parent=MS.gene05553
chr6.2	exon	85229613	85229717	85229613	ID=MS.gene05553.t1.exon1;Parent=MS.gene05553.t1
chr6.2	CDS	85229613	85229717	85229613	ID=cds.MS.gene05553.t1;Parent=MS.gene05553.t1
chr6.2	exon	85229475	85229512	85229475	ID=MS.gene05553.t1.exon2;Parent=MS.gene05553.t1
chr6.2	CDS	85229475	85229512	85229475	ID=cds.MS.gene05553.t1;Parent=MS.gene05553.t1
chr6.2	exon	85226801	85227071	85226801	ID=MS.gene05553.t1.exon3;Parent=MS.gene05553.t1
chr6.2	CDS	85226801	85227071	85226801	ID=cds.MS.gene05553.t1;Parent=MS.gene05553.t1
chr6.2	exon	85226417	85226700	85226417	ID=MS.gene05553.t1.exon4;Parent=MS.gene05553.t1
chr6.2	CDS	85226417	85226700	85226417	ID=cds.MS.gene05553.t1;Parent=MS.gene05553.t1
chr6.2	exon	85225430	85225859	85225430	ID=MS.gene05553.t1.exon5;Parent=MS.gene05553.t1
chr6.2	CDS	85225430	85225859	85225430	ID=cds.MS.gene05553.t1;Parent=MS.gene05553.t1

Gene Sequence

>MS.gene05553

ATGAGGTTCAAGAAAGGGATTGATGGTTCTACTGGTTTGTTGCAAACTGCTGTTGTTAGATATAAGAAGAAGTTTCCTTGGTCTCTTTTGAAGCCTTTTCTTCAGGTTGGTTTAAAGTTTGCGTCTTTCTTGTTTTTTTCTCAATTGGGTTTTTTTTTTTTTTGTTTAGAATGATTTTTTTTGATGTTATTTGTTGTTGTTGTAGGTTGATTTGATTTCAACAATTCACATAGCAGATGAAGAGTATGTATTTTTTATCTTGTCATTTTTTTTCCCTTTTGGAATTTGGTAGTTTTAGCTTAATACCTTTTTGGATAAACAACTTAAGTTAAATTCTTATGAATAATCTATTTCTATTAGAAAAGATACAATAATGACAAATCTGTTTCCTTATTAGTTATAGGCTGTTTCCATAAGCTATCATGGAGAGACTATGGAAATAAGCAGAAAGCAGGTTATACACATGTCTTAAGCTGTTTCCAAATACTCTCTTGAACAGTCTCACAAGTGCTTACGAAGCTCTGTGAAAGCAGCTTATTACATTTTGAATTTTGTAGTGTTCAACAGCAACTTAGAGCATGTTTGGATTGAATTTTTTGAGTTTATACAATGTGCAAGCACTTCTGAAGCTCTGTGAAGGAGCTTACGAAAATATTTGTTAGAACTCAATGAGTTCCATTGACTAGCTTCAGAGAAGCTTCTTGAGTTCTCAAAGAAAGAGAGAGCGTATTGAATCAGTTATACATTTAACATTATGAATAAAGATATTACAAGACAAGTATTTATATGTTGTTGACCATGGATGGTAGCTGTAACATAATTGGTTACCGATGAAGAGTATGTATTGTCTATCTTGCCCTTTTTTTCGCTGATTGATTTTTGGATTTGGTAGTTTTCAAGAGCAACTTAAGGTTTGTTTGGATTGACTTATTTGAGCTTATCTACTAACTTAAGCACTTGTAAGACTGTTTGAGATAACTTATGAAAACAACTTATGACATGTCAATAAGCTATTTCAGTAATGTTATTAGTGTGGGCACTTGGATAAACAATTTAGTCAAGTGTTTATTTAATAAGTACGTATCATACAAGCTTAAGCTCTTTTTACAATCAAAGTTAAAATGAGGAGAAACTCAACATTAGCTCTTTATATGTTGTATCTATAAGTTATTTTAGAAATTTTATGAAAATTGGTTGAAAATAACTTATGATCTTATCATTTGCTATTTTTAGTATCTCTAGCTTCCAAATACTTACATAAATGTTTATGTCATCAGCTAAATTCTTACAAACTTACATATATGTTTTATTTATGTCATAAAGATAAACTCTTTGAAACACTCTCACTGAGTGTTTGGATTTCAATTTGAAATTGTTCTAAGTTTATGTCTAAGCCTATCCATTTCTTTTGTTGGATAGGCTAAAACATATGATTGAGTCTTAAATCCAAACACTCTGGACTCGTTAGGCGGCAAAGAAATTTGGGTATGGATGAGGGGCTGATACAATTCACAGGGTTTTTTGAGGAAAGATTATGAAGAATTATGGGAAATCAATCATGAGAACAGGTGGATAGGCAGGAGACTTATAATTTCTGAGATGAACAAGTAGAATTGGAGTTTTACATGTATAGTTTTAGATATTTATGCAGGTCTAGCAAACCACTGGTTTGCAGCCCATGTGGTTATGGATAAGGTTAAGGCCAATCTCACTGAGTGCTAATCATTATGTTCAAATTTTTATTTAGGAGTTTTTAGTGTACATCTATTGATATTATTGGTGATGATCGGAGGACTATGTGTAAATGTGTAATGATATTGCTAGATAGTATTTTACTTTTGCTCTCTCCGAAATATTTAGTTCATAATAAAATGGATGAACAAAATTATCATCCTGACATTCAACGGCCGCGGGGGTGGGGGGAGGGAAGAGAGACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAAAAAGAATAATATTAGCTGTACCTTTGGCGTGGATTGCTGAACTACATCTCAAACAAACTGCGGATATGCTTACAAACTTTCTACATTTTGTGAAGTCACGAATATGGCTACTTTTCTAGTTTTGAACATTCTCTAAGATTTGTTTTGATAAATATGATTCTCACATCGGAAAGTCTCACCTAAGTGAGGCTTATAAGCCTAGGGATTTTCTCACCTAATGGACTACTTTTGGGATAGGTTCTCCCTTTGGATTTATGCTCTTAAGATTAGTGCTGCCATTGAGACTAATGACTTCTCGGTCGGAAAGGGCTACTTGCGAAGGGTTCTGATCGGTGGAGGGTTCCGACCATTGAAGAAGTTAAGTGAAGTCACGGAGTAAGTGTCATTGAGTGAAAGTTGTCGTAGGCATCGATCCTCGAATGATGGTGCGTTGGTGTGAGTCACACACTGTGGAGTCTCACCTAAGAAGTGAGACTTAAACGTCAAAGGGTTCTTTCACCTAATGGACTAGTGTTATGTGATGAGCTTTCCCTTTAGGCTTATGCTCATAACTAAGTACTACTGCACAAGTGCTCGTTGATGCATGGACTTAATTTGTTTATCATATTTATTTACATTTTCCCCAAAGCAGTATATTAACTTTTAATTTTGATGATCCTAATTTTGATGAGCAGGTATTTTCTGGCCCTCCAGAAGGAGCTTGAGTCCTACGATTGTGTCCTTTATGAAATGGTAGCTAGCAAGGAAACTTTAGAGAATATGAGAAACCCTATGGCTAAAAAAAGGTTAAAAGGATCACAAACTAGAGGTTTTAACATTATTGGATGCATCCAAAGACAGATGGCTCAAATTCTCAGGCTTGATTTCCAATTAGATTGTCTCAATTACCAGTCTGAAAATTGGCAACATGCAGATCTTGATTATGAGACCTTCCAATTACTCCAGGTTTTGAGTTGCTAATTTTTAGTCGATTATGAAGAGTAATGAATAATGATCGTTATTTATATTCATTGTTGAGATCTGATTTTTCTCTCTTTTGTTTCAGCAAGCAAAAGGTGAAAGTTTATTTTCTTTTGCAAAGGATATGACTCTTAGATCTACAAAGGCAATGTTGCAGCCTTCAATTCCGGAAGATCTTGATCCATGGAGATCTAAGCTTTTATGGGCTTCACGTGTACTTCCTATGCCGCTTGTTGGCCTTTTTCTCATCGGAAGCGTTTGTGCAAATGTGGGAAGTCCAGCATCAGAATATCCTGAAATAGAAGCATTGTCAAGGCTTGATGTAAGTGCAGCAATGAAGGTCTTCCTTGCAAAGAGACTAACATCTGAGTAAGTCCCTCTCATTTCTGTGTGCATCTCTCTCTCTAATTTATAGAAGCTCTTGTTCCTGTAGGGTTTTGAGCTACGAGCTTACTTTTGATCTTGTCATTTAAGTGCATGTTTGGATCCATGGTGAGTTTGGCTGAATCACAGTGTGCCACAATGATTTTGGGAAGATCTTGAACAAAATCACAGTGCCGACATGATTTCGTCAAACTCATCATGATTTCAAACATGCACTGAAAGTAGAAAAAAGTTTGCAAGATGCTCTTTAATACACTCTTGACAACATAGTCTCTTCTACTGGTTGAAATTCATATAGGTCCCGCATAATTTTGTGGGGTCCGTTTCTAAAACAGTGGGATCTTAATGAATTTCAACAAATAAGAGAGAGTGCATTCTGAACTGAAGAATATGTAGCTAGCAATCCTTTTGAAAGTGTTGTCCAGGACATAAAACTTGGTTGAAACCGTGCAATTCAAGAGATTGCATAAACACAATCATATTAATTTTCTTTTGTTGAGTCACAAAACTTGAGTATTGATGATAAATTTTTTGCTGTACAGCTTGACACAAAATACGGCAGATGTGGAGGAGAAATCTGTTATAATTGGTGAGAGAAATCGAGTTGCAATCGAGAACCTCAGAAAAGCAATGGATAAGGGACAAAATAAGATTGCCATACTTTACGGGGGTGGCCACATGCCGGATCTCGGAAGGAGATTGAGGGAGGAGTTCGATTTAGTCCCGTCTGGTGTGGAGTGGGTAACAGCTTGGTCCATAAGGAAAAGGAAACTTGATACAAGTTCACTTCCGTTTCTGAAGACAGTGGCTAGGGCTTCAGGTTGGCCGTTGAACCGTTATCAGACATTGGCTTTGCTCATCTTTTCGTCAATCTTGGCGGTGGATCTGTGGTTTTGGGAGCTATTCTTCGGTACCACGGTGAATTGGGTCTCTGATGTTACCACAGAAATTCTTCGGTATGTTGGTAATTAA

Protein sequence

>MS.gene05553.t1

MRFKKGIDGSTGLLQTAVVRYKKKFPWSLLKPFLQVDLISTIHIADEEYFLALQKELESYDCVLYEMVASKETLENMRNPMAKKRLKGSQTRGFNIIGCIQRQMAQILRLDFQLDCLNYQSENWQHADLDYETFQLLQQAKGESLFSFAKDMTLRSTKAMLQPSIPEDLDPWRSKLLWASRVLPMPLVGLFLIGSVCANVGSPASEYPEIEALSRLDVSAAMKVFLAKRLTSDLTQNTADVEEKSVIIGERNRVAIENLRKAMDKGQNKIAILYGGGHMPDLGRRLREEFDLVPSGVEWVTAWSIRKRKLDTSSLPFLKTVARASGWPLNRYQTLALLIFSSILAVDLWFWELFFGTTVNWVSDVTTEILRYVGN