Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37900.t1 | XP_003616942.1 | 96.8 | 248 | 8 | 0 | 1 | 248 | 1 | 248 | 4.60E-128 | 467.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37900.t1 | G7K7L7 | 96.8 | 248 | 8 | 0 | 1 | 248 | 1 | 248 | 3.3e-128 | 467.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05344 | MS.gene37900 | -0.803676 | 3.11E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene37900 | 0.813061 | 3.10E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37900.t1 | MTR_5g085980 | 96.774 | 248 | 8 | 0 | 1 | 248 | 1 | 248 | 6.65e-180 | 494 |
| MS.gene37900.t1 | MTR_5g085980 | 96.371 | 248 | 7 | 1 | 1 | 248 | 1 | 246 | 2.88e-176 | 484 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37900.t1 | AT1G05060 | 58.333 | 252 | 101 | 2 | 1 | 248 | 1 | 252 | 3.94e-102 | 297 |
Find 50 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGATCTATCTAAAATTT+TGG | 0.076463 | 5.3:-69564472 | MS.gene37900:CDS |
| TAACGGCTTGTTTGGATTCT+TGG | 0.230694 | 5.3:+69567536 | None:intergenic |
| GATGCTGCTTTCAACTTCTC+CGG | 0.362635 | 5.3:+69566902 | None:intergenic |
| GATACAGAAGCTCGAAGTTT+GGG | 0.368646 | 5.3:+69567328 | None:intergenic |
| CATCATTCTCTGCATCGAAA+TGG | 0.371193 | 5.3:-69567366 | MS.gene37900:CDS |
| AGATACAGAAGCTCGAAGTT+TGG | 0.379162 | 5.3:+69567327 | None:intergenic |
| ATTGCCACTGCAGTTGTATT+CGG | 0.384023 | 5.3:-69564974 | MS.gene37900:CDS |
| AAGTTACCTTTGGCGCTAGA+AGG | 0.387475 | 5.3:-69567261 | MS.gene37900:intron |
| GGTGGTGCTGCAATGATAAT+TGG | 0.393917 | 5.3:-69564953 | MS.gene37900:CDS |
| CGATGAACGACACGTCGTTC+AGG | 0.396987 | 5.3:-69567467 | MS.gene37900:CDS |
| TCTCTTCCACAAGTTACCTT+TGG | 0.404695 | 5.3:-69567271 | MS.gene37900:CDS |
| TACATTATGCAGCTCTAACT+TGG | 0.413171 | 5.3:+69564919 | None:intergenic |
| TATGTCAAGAAAGTGGCATT+TGG | 0.416481 | 5.3:-69564526 | MS.gene37900:CDS |
| CGTTTCGTCTCTGAATAGTT+TGG | 0.431600 | 5.3:+69567399 | None:intergenic |
| AGGGAGTGTCGTAGAACTTC+GGG | 0.433676 | 5.3:+69567427 | None:intergenic |
| TTTCTAGCGGGAAGGTTAGC+AGG | 0.436098 | 5.3:-69567580 | MS.gene37900:CDS |
| ATCATTCTCTGCATCGAAAT+GGG | 0.438147 | 5.3:-69567365 | MS.gene37900:CDS |
| CGAAGAGGATTGATAGCATC+AGG | 0.449172 | 5.3:+69567304 | None:intergenic |
| ATCGAAATGGGCTCTTCAAT+CGG | 0.463139 | 5.3:-69567353 | MS.gene37900:CDS |
| CTCTGAATAGTTTGGAAGGA+AGG | 0.472817 | 5.3:+69567407 | None:intergenic |
| TACAGCTAATGAATTGCGTC+AGG | 0.486536 | 5.3:-69566948 | MS.gene37900:CDS |
| AAGGGAGTGTCGTAGAACTT+CGG | 0.511222 | 5.3:+69567426 | None:intergenic |
| ATGCTGCTTTCAACTTCTCC+GGG | 0.519765 | 5.3:+69566903 | None:intergenic |
| CAAGAAAGTGGCATTTGGAA+AGG | 0.526917 | 5.3:-69564521 | MS.gene37900:CDS |
| ATGGATGACCTCAAAACTAA+AGG | 0.534397 | 5.3:-69564705 | MS.gene37900:CDS |
| ATTATGCAGCTCTAACTTGG+AGG | 0.547168 | 5.3:+69564922 | None:intergenic |
| AAGAAAGTGGCATTTGGAAA+GGG | 0.553714 | 5.3:-69564520 | MS.gene37900:CDS |
| CTAATGAATTGCGTCAGGAC+CGG | 0.564086 | 5.3:-69566943 | MS.gene37900:CDS |
| CTGAGAATATGTCAAGAAAG+TGG | 0.564264 | 5.3:-69564533 | MS.gene37900:CDS |
| GTGTCGTTCATCGACAGTGT+TGG | 0.565460 | 5.3:+69567477 | None:intergenic |
| AAGTTGAAAGCAGCATCTGA+AGG | 0.570779 | 5.3:-69566896 | MS.gene37900:CDS |
| AATGAACCTTCTAGCGCCAA+AGG | 0.571487 | 5.3:+69567255 | None:intergenic |
| GAATTGCCTGAAGCAAAACA+TGG | 0.573837 | 5.3:-69566983 | MS.gene37900:CDS |
| ACGCAATTCATTAGCTGTAG+AGG | 0.575232 | 5.3:+69566952 | None:intergenic |
| CAAACTATTCAGAGACGAAA+CGG | 0.576652 | 5.3:-69567398 | MS.gene37900:CDS |
| TCGTCTCTGAATAGTTTGGA+AGG | 0.591010 | 5.3:+69567403 | None:intergenic |
| TGCTGCAATGATAATTGGTA+TGG | 0.594663 | 5.3:-69564948 | MS.gene37900:CDS |
| TCTGAATAGTTTGGAAGGAA+GGG | 0.594862 | 5.3:+69567408 | None:intergenic |
| TGACCTCAAAACTAAAGGAA+AGG | 0.603490 | 5.3:-69564700 | MS.gene37900:CDS |
| TGCAATGATAATTGGTATGG+TGG | 0.615522 | 5.3:-69564945 | MS.gene37900:CDS |
| GCCACTGCAGTTGTATTCGG+TGG | 0.617882 | 5.3:-69564971 | MS.gene37900:CDS |
| AGAGAAACGAAAGCGCGAAG+AGG | 0.618299 | 5.3:+69567289 | None:intergenic |
| GGTTAACATAGACGTCATAC+CGG | 0.620666 | 5.3:+69566924 | None:intergenic |
| AATTGCCTGAAGCAAAACAT+GGG | 0.623883 | 5.3:-69566982 | MS.gene37900:CDS |
| AGTTGAAAGCAGCATCTGAA+GGG | 0.631833 | 5.3:-69566895 | MS.gene37900:CDS |
| CTAGCGCCAAAGGTAACTTG+TGG | 0.643943 | 5.3:+69567265 | None:intergenic |
| ATTGCCTGAAGCAAAACATG+GGG | 0.672964 | 5.3:-69566981 | MS.gene37900:CDS |
| GTATGACGTCTATGTTAACC+CGG | 0.686842 | 5.3:-69566921 | MS.gene37900:CDS |
| ACCACCGAATACAACTGCAG+TGG | 0.702322 | 5.3:+69564970 | None:intergenic |
| TAGAACTTCGGGAAGCACGT+CGG | 0.706030 | 5.3:+69567438 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAATTGAAAACAAAAT+AGG | + | chr5.3:69567035-69567054 | None:intergenic | 10.0% |
| !!! | ATATAATGTTTTAACAAAAT+AGG | - | chr5.3:69566165-69566184 | MS.gene37900:intron | 10.0% |
| !!! | ATTGTATTTAAAATTGATTT+TGG | + | chr5.3:69564933-69564952 | None:intergenic | 10.0% |
| !!! | TATAATGTTTTAACAAAATA+GGG | - | chr5.3:69566166-69566185 | MS.gene37900:intron | 10.0% |
| !!! | TTTTTCTTCTTTTTATATAT+AGG | + | chr5.3:69566489-69566508 | None:intergenic | 10.0% |
| !! | AAAATAGGAATTAGAAAATA+TGG | + | chr5.3:69567020-69567039 | None:intergenic | 15.0% |
| !! | AAATAGGAATTAGAAAATAT+GGG | + | chr5.3:69567019-69567038 | None:intergenic | 15.0% |
| !! | TAATTCAATAATTGCTTAAT+GGG | - | chr5.3:69565320-69565339 | MS.gene37900:intron | 15.0% |
| !! | TTAGTCTACTTATATAATTA+AGG | + | chr5.3:69566941-69566960 | None:intergenic | 15.0% |
| !!! | AAAAGATCTATCTAAAATTT+TGG | - | chr5.3:69567575-69567594 | MS.gene37900:CDS | 15.0% |
| !!! | AAAGATCTATCTAAAATTTT+GGG | - | chr5.3:69567576-69567595 | MS.gene37900:CDS | 15.0% |
| !!! | TTTGTTTTCAATTTTATAGT+TGG | - | chr5.3:69567037-69567056 | MS.gene37900:intron | 15.0% |
| !!! | TTTTTTTCAATTCAATTTCT+AGG | - | chr5.3:69564848-69564867 | MS.gene37900:intron | 15.0% |
| !! | AAACTTATGTATATTAGCTA+TGG | - | chr5.3:69565604-69565623 | MS.gene37900:intron | 20.0% |
| !! | CTAATTCAATAATTGCTTAA+TGG | - | chr5.3:69565319-69565338 | MS.gene37900:intron | 20.0% |
| !! | TGAATTAGTGTTTAACTAAA+CGG | + | chr5.3:69565307-69565326 | None:intergenic | 20.0% |
| !!! | AAATTGATTTTGGTATTTTG+TGG | + | chr5.3:69564923-69564942 | None:intergenic | 20.0% |
| !!! | ATAAATGTTGAGATTTTATG+AGG | - | chr5.3:69565866-69565885 | MS.gene37900:intron | 20.0% |
| !!! | TAAATGTTGAGATTTTATGA+GGG | - | chr5.3:69565867-69565886 | MS.gene37900:intron | 20.0% |
| !!! | TTCTAGATTTTATTCTAACT+TGG | + | chr5.3:69564898-69564917 | None:intergenic | 20.0% |
| !!! | TTTCAATTTTATAGTTGGAA+AGG | - | chr5.3:69567042-69567061 | MS.gene37900:intron | 20.0% |
| !!! | TTTTAAATTTATGCTTACTG+TGG | - | chr5.3:69566049-69566068 | MS.gene37900:intron | 20.0% |
| !!! | TTTTTATATATAGGACAAGA+GGG | + | chr5.3:69566480-69566499 | None:intergenic | 20.0% |
| ! | AAATAAAATAATCAAGTCCG+AGG | - | chr5.3:69566511-69566530 | MS.gene37900:intron | 25.0% |
| ! | AATGGTCATCATTATAATCA+TGG | - | chr5.3:69566341-69566360 | MS.gene37900:intron | 25.0% |
| ! | AATTGCAAAATCCAGTTTAT+TGG | - | chr5.3:69567285-69567304 | MS.gene37900:CDS | 25.0% |
| ! | AGCAATTCTCAATAAAAACA+AGG | - | chr5.3:69565259-69565278 | MS.gene37900:intron | 25.0% |
| ! | AGGATTATCATAGTTTATAG+TGG | + | chr5.3:69565716-69565735 | None:intergenic | 25.0% |
| ! | ATAAATGTGAGGTTTAAACA+GGG | - | chr5.3:69566252-69566271 | MS.gene37900:intron | 25.0% |
| ! | ATGTACTAAATATCCCAAAA+TGG | + | chr5.3:69566853-69566872 | None:intergenic | 25.0% |
| ! | GAAATGCAATTATTTCACAT+AGG | + | chr5.3:69566605-69566624 | None:intergenic | 25.0% |
| ! | GATAAATTGGGTATTAAGAA+GGG | - | chr5.3:69564980-69564999 | MS.gene37900:CDS | 25.0% |
| ! | GTGAAATAATTGCATTTCTA+AGG | - | chr5.3:69566607-69566626 | MS.gene37900:intron | 25.0% |
| ! | TAAGTACTTGTGTAAGTATT+TGG | + | chr5.3:69565494-69565513 | None:intergenic | 25.0% |
| ! | TGATAAATTGGGTATTAAGA+AGG | - | chr5.3:69564979-69564998 | MS.gene37900:CDS | 25.0% |
| !! | AAAACTTACCCATATTTTCA+TGG | + | chr5.3:69567418-69567437 | None:intergenic | 25.0% |
| !! | AAACTTACCCATATTTTCAT+GGG | + | chr5.3:69567417-69567436 | None:intergenic | 25.0% |
| !! | AAATGTTGAGATTTTATGAG+GGG | - | chr5.3:69565868-69565887 | MS.gene37900:intron | 25.0% |
| !! | ACTGGATTTTGCAATTTATA+TGG | + | chr5.3:69567281-69567300 | None:intergenic | 25.0% |
| !! | ATGCCAAAACTTTGATTTAT+AGG | - | chr5.3:69567491-69567510 | MS.gene37900:CDS | 25.0% |
| !! | ATTTTGTTCCCATGAAAATA+TGG | - | chr5.3:69567406-69567425 | MS.gene37900:CDS | 25.0% |
| !! | CTAGTTTGAAATTATTGCTA+AGG | - | chr5.3:69566133-69566152 | MS.gene37900:intron | 25.0% |
| !! | CTTTTGAGCTAATTTTGTAA+CGG | + | chr5.3:69564531-69564550 | None:intergenic | 25.0% |
| !! | CTTTTTATATATAGGACAAG+AGG | + | chr5.3:69566481-69566500 | None:intergenic | 25.0% |
| !! | TCTCGTATATAAGAACATTT+TGG | + | chr5.3:69566679-69566698 | None:intergenic | 25.0% |
| !! | TGTTCCATTAATTTGAATGA+GGG | - | chr5.3:69565916-69565935 | MS.gene37900:intron | 25.0% |
| !! | TTTTGTTCCCATGAAAATAT+GGG | - | chr5.3:69567407-69567426 | MS.gene37900:CDS | 25.0% |
| !!! | ATTTTGGGATATTTAGTACA+TGG | - | chr5.3:69566852-69566871 | MS.gene37900:intron | 25.0% |
| !!! | CTTTTTTCTGTTTTAACAGA+TGG | - | chr5.3:69567323-69567342 | MS.gene37900:CDS | 25.0% |
| !!! | TTTTTGATATTCTCAAGTTG+TGG | + | chr5.3:69567384-69567403 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTTGAGTGTTTC+AGG | - | chr5.3:69565038-69565057 | MS.gene37900:intron | 25.0% |
| AACTGTTTCGATGATTGAAT+AGG | - | chr5.3:69565366-69565385 | MS.gene37900:intron | 30.0% | |
| AACTTCACATTACATCTCTA+TGG | - | chr5.3:69565635-69565654 | MS.gene37900:intron | 30.0% | |
| AATAAAAACAAGGTGTACAG+GGG | - | chr5.3:69565269-69565288 | MS.gene37900:intron | 30.0% | |
| ACATTAAAGTGTAACGGTAT+AGG | + | chr5.3:69565736-69565755 | None:intergenic | 30.0% | |
| ACTGTTTCGATGATTGAATA+GGG | - | chr5.3:69565367-69565386 | MS.gene37900:intron | 30.0% | |
| ACTTCCCTCATTCAAATTAA+TGG | + | chr5.3:69565923-69565942 | None:intergenic | 30.0% | |
| AGATGTAATGTGAAGTTTGA+TGG | + | chr5.3:69565632-69565651 | None:intergenic | 30.0% | |
| AGATTAAGAAGCCAATAAAC+TGG | + | chr5.3:69567299-69567318 | None:intergenic | 30.0% | |
| AGCAACACATTAAAGTGTAA+CGG | + | chr5.3:69565742-69565761 | None:intergenic | 30.0% | |
| AGTAAGAAGAAACAATACTG+TGG | + | chr5.3:69567210-69567229 | None:intergenic | 30.0% | |
| ATAGCGTCAAGAAAAGAATA+AGG | - | chr5.3:69566967-69566986 | MS.gene37900:CDS | 30.0% | |
| CAATAAAAACAAGGTGTACA+GGG | - | chr5.3:69565268-69565287 | MS.gene37900:intron | 30.0% | |
| CATTTGAACAGAAATTTGTG+AGG | + | chr5.3:69566883-69566902 | None:intergenic | 30.0% | |
| CTCACAAATTTCTGTTCAAA+TGG | - | chr5.3:69566881-69566900 | MS.gene37900:intron | 30.0% | |
| GAAAAATCGAGAGAATGATA+AGG | + | chr5.3:69564824-69564843 | None:intergenic | 30.0% | |
| GAAACTGTTAAAAACACCAT+GGG | - | chr5.3:69566395-69566414 | MS.gene37900:intron | 30.0% | |
| GATAAATGTGAGGTTTAAAC+AGG | - | chr5.3:69566251-69566270 | MS.gene37900:intron | 30.0% | |
| GATAAGCTGAAAATAGCTTA+TGG | - | chr5.3:69565448-69565467 | MS.gene37900:intron | 30.0% | |
| TAAATGTGAGGTTTAAACAG+GGG | - | chr5.3:69566253-69566272 | MS.gene37900:intron | 30.0% | |
| TCAATAAAAACAAGGTGTAC+AGG | - | chr5.3:69565267-69565286 | MS.gene37900:intron | 30.0% | |
| TGAAACTGTTAAAAACACCA+TGG | - | chr5.3:69566394-69566413 | MS.gene37900:intron | 30.0% | |
| TGTTTGTAGTTTCTAAACTG+TGG | - | chr5.3:69565012-69565031 | MS.gene37900:intron | 30.0% | |
| TTACTTCTCTGTTATAAGTC+AGG | - | chr5.3:69566307-69566326 | MS.gene37900:intron | 30.0% | |
| TTATACACACTATGCTCTTT+AGG | - | chr5.3:69566801-69566820 | MS.gene37900:intron | 30.0% | |
| TTATGTTGTGCTTCAAATTC+AGG | - | chr5.3:69566905-69566924 | MS.gene37900:CDS | 30.0% | |
| ! | AATGTTGAGATTTTATGAGG+GGG | - | chr5.3:69565869-69565888 | MS.gene37900:intron | 30.0% |
| ! | CAGCCTATAAATCAAAGTTT+TGG | + | chr5.3:69567497-69567516 | None:intergenic | 30.0% |
| ! | CATTTTCTCATTGTAGGTTA+AGG | - | chr5.3:69565231-69565250 | MS.gene37900:intron | 30.0% |
| ! | CTGTTCCATTAATTTGAATG+AGG | - | chr5.3:69565915-69565934 | MS.gene37900:intron | 30.0% |
| !! | TAATTTTGTAACGGCTTGTT+TGG | + | chr5.3:69564522-69564541 | None:intergenic | 30.0% |
| !!! | TTATTGATTTTGCGTGTGTT+TGG | - | chr5.3:69564871-69564890 | MS.gene37900:intron | 30.0% |
| AAGAAAGTGGCATTTGGAAA+GGG | - | chr5.3:69567527-69567546 | MS.gene37900:CDS | 35.0% | |
| AATTGCCTGAAGCAAAACAT+GGG | - | chr5.3:69565065-69565084 | MS.gene37900:intron | 35.0% | |
| ACTATGCTCTTTAGGTATCA+AGG | - | chr5.3:69566809-69566828 | MS.gene37900:intron | 35.0% | |
| AGGGAACTAAGATAAATGTG+AGG | - | chr5.3:69566241-69566260 | MS.gene37900:intron | 35.0% | |
| ATCATTCTCTGCATCGAAAT+GGG | - | chr5.3:69564682-69564701 | MS.gene37900:CDS | 35.0% | |
| ATGAATAGTGCAACTTCATC+TGG | + | chr5.3:69566754-69566773 | None:intergenic | 35.0% | |
| ATGGATGACCTCAAAACTAA+AGG | - | chr5.3:69567342-69567361 | MS.gene37900:CDS | 35.0% | |
| CAAACTATTCAGAGACGAAA+CGG | - | chr5.3:69564649-69564668 | MS.gene37900:CDS | 35.0% | |
| CCAAGACAACTTTCGAATAA+TGG | - | chr5.3:69566211-69566230 | MS.gene37900:intron | 35.0% | |
| CCATTATTCGAAAGTTGTCT+TGG | + | chr5.3:69566214-69566233 | None:intergenic | 35.0% | |
| CCTTGTCAATGTTACAGTTA+GGG | - | chr5.3:69566103-69566122 | MS.gene37900:intron | 35.0% | |
| CTGAGAATATGTCAAGAAAG+TGG | - | chr5.3:69567514-69567533 | MS.gene37900:CDS | 35.0% | |
| CTTGTCAATGTTACAGTTAG+GGG | - | chr5.3:69566104-69566123 | MS.gene37900:intron | 35.0% | |
| GCTGAAAATAGCTTATGGTA+TGG | - | chr5.3:69565453-69565472 | MS.gene37900:intron | 35.0% | |
| GGAAAACTAATTGTGTAGAC+AGG | - | chr5.3:69565689-69565708 | MS.gene37900:intron | 35.0% | |
| GTCAAGTAAATACTTTGTCG+AGG | + | chr5.3:69565583-69565602 | None:intergenic | 35.0% | |
| TAAAATAATCAAGTCCGAGG+AGG | - | chr5.3:69566514-69566533 | MS.gene37900:intron | 35.0% | |
| TAAGACTTAATGAACCTCCT+CGG | + | chr5.3:69566531-69566550 | None:intergenic | 35.0% | |
| TAAGTATTTGGAAGAGCCTA+TGG | + | chr5.3:69565482-69565501 | None:intergenic | 35.0% | |
| TATGAGGGGGATAACTTATT+GGG | - | chr5.3:69565882-69565901 | MS.gene37900:intron | 35.0% | |
| TATGTCAAGAAAGTGGCATT+TGG | - | chr5.3:69567521-69567540 | MS.gene37900:CDS | 35.0% | |
| TCCTTGTCAATGTTACAGTT+AGG | - | chr5.3:69566102-69566121 | MS.gene37900:intron | 35.0% | |
| TCTGAATAGTTTGGAAGGAA+GGG | + | chr5.3:69564642-69564661 | None:intergenic | 35.0% | |
| TGACCTCAAAACTAAAGGAA+AGG | - | chr5.3:69567347-69567366 | MS.gene37900:CDS | 35.0% | |
| TGCAATGATAATTGGTATGG+TGG | - | chr5.3:69567102-69567121 | MS.gene37900:intron | 35.0% | |
| TGCTGCAATGATAATTGGTA+TGG | - | chr5.3:69567099-69567118 | MS.gene37900:intron | 35.0% | |
| TGTGTTTCAACTAACCAACT+TGG | - | chr5.3:69565819-69565838 | MS.gene37900:intron | 35.0% | |
| TTATGAGGGGGATAACTTAT+TGG | - | chr5.3:69565881-69565900 | MS.gene37900:intron | 35.0% | |
| TTGCATGCTATTACTACCTT+CGG | + | chr5.3:69566702-69566721 | None:intergenic | 35.0% | |
| TTTATGCTTACTGTGGCTAT+AGG | - | chr5.3:69566056-69566075 | MS.gene37900:intron | 35.0% | |
| ! | ACAACTTTCGAATAATGGAG+AGG | - | chr5.3:69566216-69566235 | MS.gene37900:intron | 35.0% |
| ! | AGCTGCACTTGTTGATAAAT+TGG | - | chr5.3:69564967-69564986 | MS.gene37900:CDS | 35.0% |
| ! | ATAATTGCTTAATGGGCATG+TGG | - | chr5.3:69565327-69565346 | MS.gene37900:intron | 35.0% |
| ! | GCTGCACTTGTTGATAAATT+GGG | - | chr5.3:69564968-69564987 | MS.gene37900:CDS | 35.0% |
| ! | GTTTTCCATCAACTTTTAGC+TGG | + | chr5.3:69565676-69565695 | None:intergenic | 35.0% |
| ! | TACATTATGCAGCTCTAACT+TGG | + | chr5.3:69567131-69567150 | None:intergenic | 35.0% |
| ! | TGCTCTCATTTTCTCATTGT+AGG | - | chr5.3:69565225-69565244 | MS.gene37900:intron | 35.0% |
| ! | TGGCACATATGCTTTTCATT+CGG | - | chr5.3:69566361-69566380 | MS.gene37900:intron | 35.0% |
| ! | TTCGAATAATGGAGAGGAAA+GGG | - | chr5.3:69566222-69566241 | MS.gene37900:intron | 35.0% |
| ! | TTTCGAATAATGGAGAGGAA+AGG | - | chr5.3:69566221-69566240 | MS.gene37900:intron | 35.0% |
| !! | AATTGCAGTTGGGTGTTATT+TGG | - | chr5.3:69566277-69566296 | MS.gene37900:intron | 35.0% |
| !! | ATTGCAGTTGGGTGTTATTT+GGG | - | chr5.3:69566278-69566297 | MS.gene37900:intron | 35.0% |
| !!! | ACAGTGTTGGTTTTTGAGAT+TGG | + | chr5.3:69564560-69564579 | None:intergenic | 35.0% |
| !!! | CATCCTTTCCTTTAGTTTTG+AGG | + | chr5.3:69567353-69567372 | None:intergenic | 35.0% |
| !!! | TTGTTTTGAGTGTTTCAGGT+GGG | - | chr5.3:69565042-69565061 | MS.gene37900:intron | 35.0% |
| !!! | TTTGTTTTGAGTGTTTCAGG+TGG | - | chr5.3:69565041-69565060 | MS.gene37900:intron | 35.0% |
| AAACAGGGGAAATTGCAGTT+GGG | - | chr5.3:69566267-69566286 | MS.gene37900:intron | 40.0% | |
| AAGGATCCAGCAAATGCTTT+GGG | - | chr5.3:69566986-69567005 | MS.gene37900:CDS | 40.0% | |
| AAGTTGAAAGCAGCATCTGA+AGG | - | chr5.3:69565151-69565170 | MS.gene37900:intron | 40.0% | |
| AATCAGATGCTCCCATAGTA+TGG | - | chr5.3:69565551-69565570 | MS.gene37900:intron | 40.0% | |
| ACGCAATTCATTAGCTGTAG+AGG | + | chr5.3:69565098-69565117 | None:intergenic | 40.0% | |
| AGATACAGAAGCTCGAAGTT+TGG | + | chr5.3:69564723-69564742 | None:intergenic | 40.0% | |
| AGCTAAAGTTAAACCCTTGC+AGG | - | chr5.3:69565975-69565994 | MS.gene37900:intron | 40.0% | |
| AGTTGAAAGCAGCATCTGAA+GGG | - | chr5.3:69565152-69565171 | MS.gene37900:intron | 40.0% | |
| ATTGCCACTGCAGTTGTATT+CGG | - | chr5.3:69567073-69567092 | MS.gene37900:intron | 40.0% | |
| ATTGCCTGAAGCAAAACATG+GGG | - | chr5.3:69565066-69565085 | MS.gene37900:intron | 40.0% | |
| CAAGAAAGTGGCATTTGGAA+AGG | - | chr5.3:69567526-69567545 | MS.gene37900:CDS | 40.0% | |
| CATCATTCTCTGCATCGAAA+TGG | - | chr5.3:69564681-69564700 | MS.gene37900:CDS | 40.0% | |
| CCCTAACTGTAACATTGACA+AGG | + | chr5.3:69566106-69566125 | None:intergenic | 40.0% | |
| CGAGGTAACATCCATACTAT+GGG | + | chr5.3:69565565-69565584 | None:intergenic | 40.0% | |
| CGTTTCGTCTCTGAATAGTT+TGG | + | chr5.3:69564651-69564670 | None:intergenic | 40.0% | |
| CTCTGAATAGTTTGGAAGGA+AGG | + | chr5.3:69564643-69564662 | None:intergenic | 40.0% | |
| CTGTACCAGCTAAAAGTTGA+TGG | - | chr5.3:69565668-69565687 | MS.gene37900:intron | 40.0% | |
| GAATTGCCTGAAGCAAAACA+TGG | - | chr5.3:69565064-69565083 | MS.gene37900:intron | 40.0% | |
| GATACAGAAGCTCGAAGTTT+GGG | + | chr5.3:69564722-69564741 | None:intergenic | 40.0% | |
| GCTTATGGTATGGTATCCAT+AGG | - | chr5.3:69565463-69565482 | MS.gene37900:intron | 40.0% | |
| GGTTAACATAGACGTCATAC+CGG | + | chr5.3:69565126-69565145 | None:intergenic | 40.0% | |
| GTATGACGTCTATGTTAACC+CGG | - | chr5.3:69565126-69565145 | MS.gene37900:intron | 40.0% | |
| GTTCTTATATACGAGACCGA+AGG | - | chr5.3:69566683-69566702 | MS.gene37900:intron | 40.0% | |
| GTTTCAACTAACCAACTTGG+CGG | - | chr5.3:69565822-69565841 | MS.gene37900:intron | 40.0% | |
| TAAACAGGGGAAATTGCAGT+TGG | - | chr5.3:69566266-69566285 | MS.gene37900:intron | 40.0% | |
| TAAGGATCCAGCAAATGCTT+TGG | - | chr5.3:69566985-69567004 | MS.gene37900:CDS | 40.0% | |
| TACAGCTAATGAATTGCGTC+AGG | - | chr5.3:69565099-69565118 | MS.gene37900:intron | 40.0% | |
| TCGAGGTAACATCCATACTA+TGG | + | chr5.3:69565566-69565585 | None:intergenic | 40.0% | |
| TCGTCTCTGAATAGTTTGGA+AGG | + | chr5.3:69564647-69564666 | None:intergenic | 40.0% | |
| TCTCTTCCACAAGTTACCTT+TGG | - | chr5.3:69564776-69564795 | MS.gene37900:intron | 40.0% | |
| ! | ATCGAAATGGGCTCTTCAAT+CGG | - | chr5.3:69564694-69564713 | MS.gene37900:CDS | 40.0% |
| ! | ATTATGCAGCTCTAACTTGG+AGG | + | chr5.3:69567128-69567147 | None:intergenic | 40.0% |
| ! | GGCACATATGCTTTTCATTC+GGG | - | chr5.3:69566362-69566381 | MS.gene37900:intron | 40.0% |
| ! | GTTATAAGTCAGGTTGTGTG+TGG | - | chr5.3:69566317-69566336 | MS.gene37900:intron | 40.0% |
| ! | TAACGGCTTGTTTGGATTCT+TGG | + | chr5.3:69564514-69564533 | None:intergenic | 40.0% |
| !! | TACTATGGGAGCATCTGATT+AGG | + | chr5.3:69565551-69565570 | None:intergenic | 40.0% |
| !! | TGAGTGATGTTCTGCCATTT+TGG | - | chr5.3:69566836-69566855 | MS.gene37900:intron | 40.0% |
| !!! | GAGTGATGTTCTGCCATTTT+GGG | - | chr5.3:69566837-69566856 | MS.gene37900:intron | 40.0% |
| AAGTTACCTTTGGCGCTAGA+AGG | - | chr5.3:69564786-69564805 | MS.gene37900:intron | 45.0% | |
| AATGAACCTTCTAGCGCCAA+AGG | + | chr5.3:69564795-69564814 | None:intergenic | 45.0% | |
| ACAAGTTTCTCCCCTGTTAC+CGG | + | chr5.3:69566004-69566023 | None:intergenic | 45.0% | |
| AGGATCCAGCAAATGCTTTG+GGG | - | chr5.3:69566987-69567006 | MS.gene37900:CDS | 45.0% | |
| CTAATGAATTGCGTCAGGAC+CGG | - | chr5.3:69565104-69565123 | MS.gene37900:intron | 45.0% | |
| CTGTGGCTATAGGATGTCAA+AGG | - | chr5.3:69566066-69566085 | MS.gene37900:intron | 45.0% | |
| ! | AGTCAGGTTGTGTGTGGTAA+TGG | - | chr5.3:69566323-69566342 | MS.gene37900:intron | 45.0% |
| ! | ATCATCCCCAAAGCATTTGC+TGG | + | chr5.3:69566995-69567014 | None:intergenic | 45.0% |
| ! | CGAAGAGGATTGATAGCATC+AGG | + | chr5.3:69564746-69564765 | None:intergenic | 45.0% |
| ! | GAAACCCCATGTTTTGCTTC+AGG | + | chr5.3:69565073-69565092 | None:intergenic | 45.0% |
| !! | AAGGGAGTGTCGTAGAACTT+CGG | + | chr5.3:69564624-69564643 | None:intergenic | 45.0% |
| !! | ATGCTGCTTTCAACTTCTCC+GGG | + | chr5.3:69565147-69565166 | None:intergenic | 45.0% |
| !! | CGGAAACTGAGTTGATGTAG+TGG | - | chr5.3:69565842-69565861 | MS.gene37900:intron | 45.0% |
| !! | GATGCTGCTTTCAACTTCTC+CGG | + | chr5.3:69565148-69565167 | None:intergenic | 45.0% |
| !! | GGTGGTGCTGCAATGATAAT+TGG | - | chr5.3:69567094-69567113 | MS.gene37900:intron | 45.0% |
| !!! | CGTCGAGCTTTTAGAACTCA+TGG | - | chr5.3:69566425-69566444 | MS.gene37900:intron | 45.0% |
| ACCACCGAATACAACTGCAG+TGG | + | chr5.3:69567080-69567099 | None:intergenic | 50.0% | |
| CAACTCAGTTTCCGCCAAGT+TGG | + | chr5.3:69565836-69565855 | None:intergenic | 50.0% | |
| CAAGTTTCTCCCCTGTTACC+GGG | + | chr5.3:69566003-69566022 | None:intergenic | 50.0% | |
| CTAGCGCCAAAGGTAACTTG+TGG | + | chr5.3:69564785-69564804 | None:intergenic | 50.0% | |
| GGTAACAGGGGAGAAACTTG+TGG | - | chr5.3:69566003-69566022 | MS.gene37900:intron | 50.0% | |
| GTTAAACCCTTGCAGGTTCC+CGG | - | chr5.3:69565982-69566001 | MS.gene37900:intron | 50.0% | |
| ! | AGAGAAACGAAAGCGCGAAG+AGG | + | chr5.3:69564761-69564780 | None:intergenic | 50.0% |
| ! | GTGTCGTTCATCGACAGTGT+TGG | + | chr5.3:69564573-69564592 | None:intergenic | 50.0% |
| ! | TAGAACTTCGGGAAGCACGT+CGG | + | chr5.3:69564612-69564631 | None:intergenic | 50.0% |
| ! | TTTCTAGCGGGAAGGTTAGC+AGG | - | chr5.3:69564467-69564486 | MS.gene37900:CDS | 50.0% |
| !! | AGGGAGTGTCGTAGAACTTC+GGG | + | chr5.3:69564623-69564642 | None:intergenic | 50.0% |
| CGATGAACGACACGTCGTTC+AGG | - | chr5.3:69564580-69564599 | MS.gene37900:intron | 55.0% | |
| CTGTTACCGGGAACCTGCAA+GGG | + | chr5.3:69565991-69566010 | None:intergenic | 55.0% | |
| CTTGCAGGTTCCCGGTAACA+GGG | - | chr5.3:69565990-69566009 | MS.gene37900:intron | 55.0% | |
| GCCACTGCAGTTGTATTCGG+TGG | - | chr5.3:69567076-69567095 | MS.gene37900:intron | 55.0% | |
| TTGCAGGTTCCCGGTAACAG+GGG | - | chr5.3:69565991-69566010 | MS.gene37900:intron | 55.0% | |
| AGCTCGACGCACTCTTCCCA+TGG | + | chr5.3:69566414-69566433 | None:intergenic | 60.0% | |
| CCTGTTACCGGGAACCTGCA+AGG | + | chr5.3:69565992-69566011 | None:intergenic | 60.0% | |
| CCTTGCAGGTTCCCGGTAAC+AGG | - | chr5.3:69565989-69566008 | MS.gene37900:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 69564461 | 69567608 | 69564461 | ID=MS.gene37900 |
| chr5.3 | mRNA | 69564461 | 69567608 | 69564461 | ID=MS.gene37900.t1;Parent=MS.gene37900 |
| chr5.3 | exon | 69567262 | 69567608 | 69567262 | ID=MS.gene37900.t1.exon1;Parent=MS.gene37900.t1 |
| chr5.3 | CDS | 69567262 | 69567608 | 69567262 | ID=cds.MS.gene37900.t1;Parent=MS.gene37900.t1 |
| chr5.3 | exon | 69566885 | 69567009 | 69566885 | ID=MS.gene37900.t1.exon2;Parent=MS.gene37900.t1 |
| chr5.3 | CDS | 69566885 | 69567009 | 69566885 | ID=cds.MS.gene37900.t1;Parent=MS.gene37900.t1 |
| chr5.3 | exon | 69564922 | 69565013 | 69564922 | ID=MS.gene37900.t1.exon3;Parent=MS.gene37900.t1 |
| chr5.3 | CDS | 69564922 | 69565013 | 69564922 | ID=cds.MS.gene37900.t1;Parent=MS.gene37900.t1 |
| chr5.3 | exon | 69564641 | 69564727 | 69564641 | ID=MS.gene37900.t1.exon4;Parent=MS.gene37900.t1 |
| chr5.3 | CDS | 69564641 | 69564727 | 69564641 | ID=cds.MS.gene37900.t1;Parent=MS.gene37900.t1 |
| chr5.3 | exon | 69564461 | 69564556 | 69564461 | ID=MS.gene37900.t1.exon5;Parent=MS.gene37900.t1 |
| chr5.3 | CDS | 69564461 | 69564556 | 69564461 | ID=cds.MS.gene37900.t1;Parent=MS.gene37900.t1 |
| Gene Sequence |
| Protein sequence |
