AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene38133

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38133.t1 MTR_5g098420 98.091 419 8 0 2 420 3 421 0.0 837
MS.gene38133.t1 MTR_3g460780 65.372 309 105 2 33 339 30 338 3.67e-135 394
MS.gene38133.t1 MTR_7g075453 39.423 416 215 10 27 420 16 416 3.81e-81 256
MS.gene38133.t1 MTR_8g069000 90.164 61 6 0 1 61 1 61 1.06e-30 113
MS.gene38133.t1 MTR_1g009950 36.813 182 104 4 18 190 7 186 2.98e-27 109
MS.gene38133.t1 MTR_2g437700 27.378 347 232 11 8 337 1 344 1.30e-23 102
MS.gene38133.t1 MTR_1g009940 35.374 147 92 2 34 179 25 169 3.36e-22 96.3
MS.gene38133.t1 MTR_1g009910 34.694 147 93 2 34 179 25 169 1.49e-21 94.4
MS.gene38133.t1 MTR_3g108760 36.129 155 92 4 34 187 25 173 2.74e-19 87.4
MS.gene38133.t1 MTR_1g009920 35.345 116 73 1 34 149 25 138 1.19e-18 84.7
MS.gene38133.t1 MTR_2g017970 30.603 232 123 8 195 416 68 271 5.78e-17 81.3
MS.gene38133.t1 MTR_2g090765 31.984 247 136 9 183 419 25 249 9.31e-17 79.7
MS.gene38133.t1 MTR_4g059840 31.553 206 126 7 176 374 56 253 1.21e-16 80.5
MS.gene38133.t1 MTR_4g059790 31.373 204 125 7 178 374 58 253 1.52e-16 80.1
MS.gene38133.t1 MTR_2g017960 29.237 236 129 8 195 420 68 275 6.22e-15 75.1
MS.gene38133.t1 MTR_4g053380 32.124 193 114 7 185 363 63 252 1.25e-14 74.3
MS.gene38133.t1 MTR_4g059720 29.193 161 105 3 184 337 31 189 1.73e-13 70.5
MS.gene38133.t1 MTR_8g087460 27.969 261 153 10 178 420 73 316 6.34e-12 66.6
MS.gene38133.t1 MTR_8g087470 28.016 257 146 9 187 420 76 316 1.42e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38133.t1 AT4G12730 58.647 399 137 5 1 396 4 377 1.80e-158 453
MS.gene38133.t1 AT5G55730 56.906 362 140 4 33 379 25 385 1.12e-131 385
MS.gene38133.t1 AT5G55730 56.906 362 140 4 33 379 25 385 1.12e-131 385
MS.gene38133.t1 AT2G45470 43.112 392 201 8 16 391 9 394 2.73e-90 280
MS.gene38133.t1 AT3G60900 41.422 408 201 10 8 391 7 400 7.68e-87 271
MS.gene38133.t1 AT3G12660 43.421 152 83 2 29 179 20 169 4.31e-31 120
MS.gene38133.t1 AT3G46550 29.480 346 208 12 34 350 30 368 1.93e-27 113
MS.gene38133.t1 AT2G24450 37.427 171 96 5 10 179 9 169 6.23e-25 103
MS.gene38133.t1 AT4G31370 35.135 148 92 3 33 179 25 169 3.19e-21 93.2
MS.gene38133.t1 AT5G03170 29.474 190 121 6 179 360 19 203 4.64e-17 80.9
MS.gene38133.t1 AT2G20520 34.634 205 117 7 180 374 23 220 4.33e-16 77.8
MS.gene38133.t1 AT1G03870 31.016 187 112 7 194 367 38 220 1.30e-12 67.8
MS.gene38133.t1 AT5G60490 31.034 116 74 3 226 337 74 187 2.06e-11 64.3

Find 124 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTACTCTTTGCTGCTTT+TGG 0.147168 5.1:+79076408 None:intergenic
GGTGATTTGGTGGAGTTTCT+TGG 0.245142 5.1:+79077148 None:intergenic
GATGCCAAGAGAATTGTTTA+AGG 0.254991 5.1:-79076469 MS.gene38133:CDS
CAGTTTGTTTATTGGTGCTT+TGG 0.270880 5.1:-79076229 MS.gene38133:CDS
GATGATGAAAATGGAGTTAA+TGG 0.275353 5.1:-79076288 MS.gene38133:CDS
GTCAATATCACAAACCTAAA+AGG 0.277047 5.1:-79077059 MS.gene38133:CDS
AGAATTGTTTAAGGGAGTTA+AGG 0.283558 5.1:-79076460 MS.gene38133:CDS
TCTGCGTCGGCGGAGCTTAA+AGG 0.293364 5.1:+79076930 None:intergenic
ATCTGTAATGATTGGTATAC+TGG 0.301366 5.1:+79076672 None:intergenic
CTGGAACACCGTGGTATAAT+AGG 0.314783 5.1:+79076691 None:intergenic
TCAAGGGTTGAGATTCATTA+TGG 0.318794 5.1:-79076259 MS.gene38133:CDS
CCAAGTGACATTGATTTAAT+CGG 0.340784 5.1:-79076891 MS.gene38133:CDS
AAAGGTGGCAAAGTCGGTTT+TGG 0.345872 5.1:-79077041 MS.gene38133:CDS
ATCATATTTGTTATGGCCTT+CGG 0.360900 5.1:+79076611 None:intergenic
CAAGAAGAAGAAGGCGGCGC+CGG 0.364739 5.1:-79076385 MS.gene38133:CDS
CAGTGTTAACTTTGGTTTCA+AGG 0.373237 5.1:+79076556 None:intergenic
ATTTCAACATCTGTAATGAT+TGG 0.375565 5.1:+79076664 None:intergenic
GCGCGTGATGTTGTGGTTGC+CGG 0.375636 5.1:+79077373 None:intergenic
GTCGATGGCTAGGATGGTTA+TGG 0.377750 5.1:+79077265 None:intergenic
GGCGGCGCCGGCGGCGGATG+AGG 0.389395 5.1:-79076373 MS.gene38133:CDS
GGAGGTGGCGGCAGCGGCGA+TGG 0.390080 5.1:+79077394 None:intergenic
AAAGCTGCTGATGATGAAAA+TGG 0.396296 5.1:-79076297 MS.gene38133:CDS
ATGAAGACCGTCGTTGTCTT+CGG 0.397307 5.1:+79077016 None:intergenic
GGCGGTTCCAGCGGCGGATC+CGG 0.405430 5.1:+79077088 None:intergenic
CTGTGAAATCATATTTGTTA+TGG 0.408434 5.1:+79076604 None:intergenic
ATCGCCGCTGCCGCCACCTC+CGG 0.408440 5.1:-79077392 MS.gene38133:CDS
TTAAAGGATTACTGATTTGA+AGG 0.408846 5.1:+79076946 None:intergenic
GAAGAAGGCGGCGCCGGCGG+CGG 0.414846 5.1:-79076379 MS.gene38133:CDS
GTTAACACTGCAAATATTGT+TGG 0.417708 5.1:-79076543 MS.gene38133:CDS
GAAGAAGAAGGCGGCGCCGG+CGG 0.417754 5.1:-79076382 MS.gene38133:CDS
GGAGTTAATGGATTAAATCA+AGG 0.421979 5.1:-79076276 MS.gene38133:CDS
ATGCCAAGAGAATTGTTTAA+GGG 0.423949 5.1:-79076468 MS.gene38133:CDS
TGTAGTGTATAAGATAAGTA+AGG 0.425772 5.1:-79076496 MS.gene38133:CDS
ATTGTTTAAGGGAGTTAAGG+AGG 0.430839 5.1:-79076457 MS.gene38133:CDS
TCAGAATCTGCATCTGCATC+TGG 0.432705 5.1:+79076327 None:intergenic
CTTATCTTATACACTACAAA+AGG 0.441117 5.1:+79076501 None:intergenic
GTTTGTGATATTGACGTAAC+CGG 0.442226 5.1:+79077067 None:intergenic
CGCCGACGCAGAAGCGCCGA+CGG 0.447538 5.1:-79076919 MS.gene38133:CDS
GTTGCCGGAGGTGGCGGCAG+CGG 0.450353 5.1:+79077388 None:intergenic
AATATTTGCAGTGTTAACTT+TGG 0.452437 5.1:+79076548 None:intergenic
GTGTGGTACCGTCGGTGATT+TGG 0.461418 5.1:+79077135 None:intergenic
TCAACGGATTCTTTGAAAGT+AGG 0.465548 5.1:+79076807 None:intergenic
ACTCCCTTAAACAATTCTCT+TGG 0.467873 5.1:+79076465 None:intergenic
TGCCGTCGGCGCTTCTGCGT+CGG 0.476325 5.1:+79076917 None:intergenic
GGTGGCGGCAGCGGCGATGG+TGG 0.476691 5.1:+79077397 None:intergenic
GATGGAAAGGTAGTGGTTGA+AGG 0.482791 5.1:+79077322 None:intergenic
CCGATTAAATCAATGTCACT+TGG 0.484710 5.1:+79076891 None:intergenic
CAGCGGCGGATCCGGTAGCT+TGG 0.489876 5.1:+79077096 None:intergenic
GTTGTGGTTGCCGGAGGTGG+CGG 0.490801 5.1:+79077382 None:intergenic
CAAGCTACCGGATCCGCCGC+TGG 0.491705 5.1:-79077095 MS.gene38133:CDS
GGAGAGGTGTTTGTCTAGGA+GGG 0.492717 5.1:+79077226 None:intergenic
TCCTCCATGTTCCAAGCTAC+CGG 0.493888 5.1:-79077107 MS.gene38133:CDS
CTCATCGGCGAGGTGGGTGA+TGG 0.495826 5.1:+79077304 None:intergenic
GTAACAAATCTGCAAAAGAT+TGG 0.498004 5.1:+79076847 None:intergenic
CCGCTGACGGCGGTATCTGT+TGG 0.500494 5.1:+79076762 None:intergenic
CAACGGATTCTTTGAAAGTA+GGG 0.501623 5.1:+79076808 None:intergenic
GATGTTGTGGTTGCCGGAGG+TGG 0.513269 5.1:+79077379 None:intergenic
AACAGTTAAACCGCCGTCAA+CGG 0.515932 5.1:+79076791 None:intergenic
TGATGGAGAGGTGTTTGTCT+AGG 0.520466 5.1:+79077222 None:intergenic
TGGTTGAAGGTGGAGAAGCC+AGG 0.520492 5.1:+79077335 None:intergenic
AGGATTACTGATTTGAAGGA+CGG 0.524929 5.1:+79076950 None:intergenic
TCTGCATCCTCATCCGCCGC+CGG 0.525089 5.1:+79076366 None:intergenic
GGTGGGTGATGGAAAGGTAG+TGG 0.528798 5.1:+79077315 None:intergenic
GGCATTGTCGATGGCTAGGA+TGG 0.528895 5.1:+79077259 None:intergenic
TCTGCATCTGGTCCATCTGC+CGG 0.531869 5.1:+79076339 None:intergenic
GACGTAACCGGCGGTTCCAG+CGG 0.539035 5.1:+79077079 None:intergenic
TGGAGAGGTGTTTGTCTAGG+AGG 0.539087 5.1:+79077225 None:intergenic
CGTCGGCGCTTCTGCGTCGG+CGG 0.540634 5.1:+79076920 None:intergenic
CGGCGAGGTGGGTGATGGAA+AGG 0.540952 5.1:+79077309 None:intergenic
AACCTAAAAGGTGGCAAAGT+CGG 0.542701 5.1:-79077047 MS.gene38133:CDS
GAGTAAGAGCAAGAAGAAGA+AGG 0.550005 5.1:-79076394 MS.gene38133:CDS
ACTTTCAAAGAATCCGTTGA+CGG 0.551042 5.1:-79076804 MS.gene38133:CDS
GAGTTAATGGATTAAATCAA+GGG 0.551140 5.1:-79076275 MS.gene38133:CDS
GACGTATGGAAGTTCTTCTA+CGG 0.551640 5.1:+79076977 None:intergenic
TGGCGGCATTGTCGATGGCT+AGG 0.553261 5.1:+79077255 None:intergenic
GGATCCGCCGCTGGAACCGC+CGG 0.554442 5.1:-79077086 MS.gene38133:CDS
GTTGATCTCATCGGCGAGGT+GGG 0.557690 5.1:+79077298 None:intergenic
CATGTCTTAGTCGACTACTT+CGG 0.559079 5.1:-79077173 MS.gene38133:CDS
GATGCAGACTCACCGGCAGA+TGG 0.563432 5.1:-79076351 MS.gene38133:CDS
CGACTAAGACATGGAGGGAG+AGG 0.569245 5.1:+79077183 None:intergenic
AGACATGGCGGCATTGTCGA+TGG 0.569829 5.1:+79077250 None:intergenic
GGTTGATCTCATCGGCGAGG+TGG 0.572163 5.1:+79077297 None:intergenic
TGGTACCGTCGGTGATTTGG+TGG 0.574288 5.1:+79077138 None:intergenic
CTAGAATGCGCGTGATGTTG+TGG 0.578501 5.1:+79077366 None:intergenic
GGATGAGGATGCAGACTCAC+CGG 0.583422 5.1:-79076358 MS.gene38133:CDS
GATTTCACAGTGCAAAATGA+TGG 0.584777 5.1:-79076591 MS.gene38133:CDS
ATGTCACTTGGAGCTGCCGT+CGG 0.585801 5.1:+79076903 None:intergenic
GGTTGAAGGTGGAGAAGCCA+GGG 0.586503 5.1:+79077336 None:intergenic
TGAAGGACGGAGATGACGTA+TGG 0.589268 5.1:+79076963 None:intergenic
GAACACCGTGGTATAATAGG+AGG 0.593137 5.1:+79076694 None:intergenic
TTGACGACGGTTGATCTCAT+CGG 0.593521 5.1:+79077289 None:intergenic
ATCGGAATTATGTCAAAACA+AGG 0.597188 5.1:-79076873 MS.gene38133:CDS
GGAAAGGTAGTGGTTGAAGG+TGG 0.597732 5.1:+79077325 None:intergenic
GTAACCGGCGGTTCCAGCGG+CGG 0.607268 5.1:+79077082 None:intergenic
TTCAAAGAATCCGTTGACGG+CGG 0.608626 5.1:-79076801 MS.gene38133:CDS
TTTGTCTAGGAGGGAAGACA+TGG 0.612461 5.1:+79077235 None:intergenic
AATATCACAAACCTAAAAGG+TGG 0.621855 5.1:-79077056 MS.gene38133:CDS
GTGAGGGAAAATAGAACAAG+TGG 0.628337 5.1:+79077443 None:intergenic
CGCATTCTAGCTAAACACCC+TGG 0.633646 5.1:-79077353 MS.gene38133:CDS
CGAAGTAGTCGACTAAGACA+TGG 0.635651 5.1:+79077174 None:intergenic
CCAACAGATACCGCCGTCAG+CGG 0.650324 5.1:-79076762 MS.gene38133:CDS
TGCAGAGAAACCGCTGACGG+CGG 0.650965 5.1:+79076752 None:intergenic
GGAGACAAGTGTGGTACCGT+CGG 0.651999 5.1:+79077127 None:intergenic
ATGAACACATTAGCAACCGA+AGG 0.652043 5.1:-79076627 MS.gene38133:CDS
CGTGATGTTGTGGTTGCCGG+AGG 0.655765 5.1:+79077376 None:intergenic
TGAGTGATAATATGAGTGTG+AGG 0.656845 5.1:+79077426 None:intergenic
GGATGGTTATGGTTTGACGA+CGG 0.659324 5.1:+79077276 None:intergenic
GTCTAGGAGGGAAGACATGG+CGG 0.661578 5.1:+79077238 None:intergenic
AACACCGTGGTATAATAGGA+GGG 0.667412 5.1:+79076695 None:intergenic
TAAGAGCAAGAAGAAGAAGG+CGG 0.669561 5.1:-79076391 MS.gene38133:CDS
GGATCCGGTAGCTTGGAACA+TGG 0.672727 5.1:+79077103 None:intergenic
GAGTGATAATATGAGTGTGA+GGG 0.673705 5.1:+79077427 None:intergenic
CTTTGCAGAGAAACCGCTGA+CGG 0.676720 5.1:+79076749 None:intergenic
GTTTCCCTCCTATTATACCA+CGG 0.679718 5.1:-79076699 MS.gene38133:CDS
AAACTCCACCAAATCACCGA+CGG 0.683966 5.1:-79077143 MS.gene38133:CDS
GACGGTTGATCTCATCGGCG+AGG 0.688199 5.1:+79077294 None:intergenic
AGTAGTCGACTAAGACATGG+AGG 0.689421 5.1:+79077177 None:intergenic
TGTGATATTGACGTAACCGG+CGG 0.692479 5.1:+79077070 None:intergenic
GAACATGGAGGAGACAAGTG+TGG 0.699589 5.1:+79077118 None:intergenic
TTTGGTGCCGAAGACAACGA+CGG 0.700628 5.1:-79077023 MS.gene38133:CDS
GTAGTCGACTAAGACATGGA+GGG 0.706207 5.1:+79077178 None:intergenic
CAGATGTTGAAATCAAACAA+CGG 0.715747 5.1:-79076654 MS.gene38133:CDS
TCCGGTAGCTTGGAACATGG+AGG 0.720001 5.1:+79077106 None:intergenic
ATTGGTATACTGGAACACCG+TGG 0.802627 5.1:+79076682 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATTTTTCAGTTTGTTTAT+TGG - chr5.1:79077445-79077464 MS.gene38133:CDS 20.0%
! AATATTTGCAGTGTTAACTT+TGG + chr5.1:79077137-79077156 None:intergenic 25.0%
! ATTTCAACATCTGTAATGAT+TGG + chr5.1:79077021-79077040 None:intergenic 25.0%
! CTTATCTTATACACTACAAA+AGG + chr5.1:79077184-79077203 None:intergenic 25.0%
! TGTAGTGTATAAGATAAGTA+AGG - chr5.1:79077186-79077205 MS.gene38133:CDS 25.0%
!! CTGTGAAATCATATTTGTTA+TGG + chr5.1:79077081-79077100 None:intergenic 25.0%
!!! GAGTTAATGGATTAAATCAA+GGG - chr5.1:79077407-79077426 MS.gene38133:CDS 25.0%
!!! TTAAAGGATTACTGATTTGA+AGG + chr5.1:79076739-79076758 None:intergenic 25.0%
AATATCACAAACCTAAAAGG+TGG - chr5.1:79076626-79076645 MS.gene38133:CDS 30.0%
AGAATTGTTTAAGGGAGTTA+AGG - chr5.1:79077222-79077241 MS.gene38133:CDS 30.0%
ATCGGAATTATGTCAAAACA+AGG - chr5.1:79076809-79076828 MS.gene38133:CDS 30.0%
ATCTGTAATGATTGGTATAC+TGG + chr5.1:79077013-79077032 None:intergenic 30.0%
ATGCCAAGAGAATTGTTTAA+GGG - chr5.1:79077214-79077233 MS.gene38133:CDS 30.0%
CAGATGTTGAAATCAAACAA+CGG - chr5.1:79077028-79077047 MS.gene38133:CDS 30.0%
GATGATGAAAATGGAGTTAA+TGG - chr5.1:79077394-79077413 MS.gene38133:CDS 30.0%
GTAACAAATCTGCAAAAGAT+TGG + chr5.1:79076838-79076857 None:intergenic 30.0%
GTCAATATCACAAACCTAAA+AGG - chr5.1:79076623-79076642 MS.gene38133:CDS 30.0%
GTTAACACTGCAAATATTGT+TGG - chr5.1:79077139-79077158 MS.gene38133:CDS 30.0%
! TTCTACGGATTTTACGTAAA+AGG + chr5.1:79076693-79076712 None:intergenic 30.0%
!! AAACTTTTTGAGAGTCTGTT+AGG + chr5.1:79076967-79076986 None:intergenic 30.0%
!! ATCATATTTGTTATGGCCTT+CGG + chr5.1:79077074-79077093 None:intergenic 30.0%
!! CCAAGTGACATTGATTTAAT+CGG - chr5.1:79076791-79076810 MS.gene38133:CDS 30.0%
!! GGAGTTAATGGATTAAATCA+AGG - chr5.1:79077406-79077425 MS.gene38133:CDS 30.0%
ACTCCCTTAAACAATTCTCT+TGG + chr5.1:79077220-79077239 None:intergenic 35.0%
ACTTTCAAAGAATCCGTTGA+CGG - chr5.1:79076878-79076897 MS.gene38133:CDS 35.0%
ATTGTTTAAGGGAGTTAAGG+AGG - chr5.1:79077225-79077244 MS.gene38133:CDS 35.0%
CCGATTAAATCAATGTCACT+TGG + chr5.1:79076794-79076813 None:intergenic 35.0%
GAGTGATAATATGAGTGTGA+GGG + chr5.1:79076258-79076277 None:intergenic 35.0%
GATGCCAAGAGAATTGTTTA+AGG - chr5.1:79077213-79077232 MS.gene38133:CDS 35.0%
GATTTCACAGTGCAAAATGA+TGG - chr5.1:79077091-79077110 MS.gene38133:CDS 35.0%
GTTTGTGATATTGACGTAAC+CGG + chr5.1:79076618-79076637 None:intergenic 35.0%
TCAAGGGTTGAGATTCATTA+TGG - chr5.1:79077423-79077442 MS.gene38133:CDS 35.0%
TGAGTGATAATATGAGTGTG+AGG + chr5.1:79076259-79076278 None:intergenic 35.0%
! AAAGCTGCTGATGATGAAAA+TGG - chr5.1:79077385-79077404 MS.gene38133:CDS 35.0%
! CAACGGATTCTTTGAAAGTA+GGG + chr5.1:79076877-79076896 None:intergenic 35.0%
! CAGTGTTAACTTTGGTTTCA+AGG + chr5.1:79077129-79077148 None:intergenic 35.0%
! CAGTTTGTTTATTGGTGCTT+TGG - chr5.1:79077453-79077472 MS.gene38133:CDS 35.0%
! TCAACGGATTCTTTGAAAGT+AGG + chr5.1:79076878-79076897 None:intergenic 35.0%
!! AGGATTACTGATTTGAAGGA+CGG + chr5.1:79076735-79076754 None:intergenic 35.0%
AACACCGTGGTATAATAGGA+GGG + chr5.1:79076990-79077009 None:intergenic 40.0%
AACCTAAAAGGTGGCAAAGT+CGG - chr5.1:79076635-79076654 MS.gene38133:CDS 40.0%
ATGAACACATTAGCAACCGA+AGG - chr5.1:79077055-79077074 MS.gene38133:CDS 40.0%
CATGTCTTAGTCGACTACTT+CGG - chr5.1:79076509-79076528 MS.gene38133:CDS 40.0%
GACGTATGGAAGTTCTTCTA+CGG + chr5.1:79076708-79076727 None:intergenic 40.0%
GAGTAAGAGCAAGAAGAAGA+AGG - chr5.1:79077288-79077307 MS.gene38133:CDS 40.0%
GTGAGGGAAAATAGAACAAG+TGG + chr5.1:79076242-79076261 None:intergenic 40.0%
GTTTCCCTCCTATTATACCA+CGG - chr5.1:79076983-79077002 MS.gene38133:CDS 40.0%
TAAGAGCAAGAAGAAGAAGG+CGG - chr5.1:79077291-79077310 MS.gene38133:CDS 40.0%
!!! CTCTTACTCTTTGCTGCTTT+TGG + chr5.1:79077277-79077296 None:intergenic 40.0%
AAACTCCACCAAATCACCGA+CGG - chr5.1:79076539-79076558 MS.gene38133:CDS 45.0%
AACAGTTAAACCGCCGTCAA+CGG + chr5.1:79076894-79076913 None:intergenic 45.0%
AGTAGTCGACTAAGACATGG+AGG + chr5.1:79076508-79076527 None:intergenic 45.0%
ATGAAGACCGTCGTTGTCTT+CGG + chr5.1:79076669-79076688 None:intergenic 45.0%
ATTGGTATACTGGAACACCG+TGG + chr5.1:79077003-79077022 None:intergenic 45.0%
CGAAGTAGTCGACTAAGACA+TGG + chr5.1:79076511-79076530 None:intergenic 45.0%
CTGGAACACCGTGGTATAAT+AGG + chr5.1:79076994-79077013 None:intergenic 45.0%
GAACACCGTGGTATAATAGG+AGG + chr5.1:79076991-79077010 None:intergenic 45.0%
GGATGGTTATGGTTTGACGA+CGG + chr5.1:79076409-79076428 None:intergenic 45.0%
GTAGTCGACTAAGACATGGA+GGG + chr5.1:79076507-79076526 None:intergenic 45.0%
TCAGAATCTGCATCTGCATC+TGG + chr5.1:79077358-79077377 None:intergenic 45.0%
TGTGATATTGACGTAACCGG+CGG + chr5.1:79076615-79076634 None:intergenic 45.0%
TTCAAAGAATCCGTTGACGG+CGG - chr5.1:79076881-79076900 MS.gene38133:CDS 45.0%
TTGACGACGGTTGATCTCAT+CGG + chr5.1:79076396-79076415 None:intergenic 45.0%
TTTGTCTAGGAGGGAAGACA+TGG + chr5.1:79076450-79076469 None:intergenic 45.0%
! GAGGGAGAGGACATTTTTGA+GGG + chr5.1:79076489-79076508 None:intergenic 45.0%
! GATGGAAAGGTAGTGGTTGA+AGG + chr5.1:79076363-79076382 None:intergenic 45.0%
!! AAAGGTGGCAAAGTCGGTTT+TGG - chr5.1:79076641-79076660 MS.gene38133:CDS 45.0%
!! AACCGACTTTGCCACCTTTT+AGG + chr5.1:79076640-79076659 None:intergenic 45.0%
!! GACATTTTTGAGGGTGGTGA+TGG + chr5.1:79076480-79076499 None:intergenic 45.0%
!! GGTGATTTGGTGGAGTTTCT+TGG + chr5.1:79076537-79076556 None:intergenic 45.0%
!! TGATGGAGAGGTGTTTGTCT+AGG + chr5.1:79076463-79076482 None:intergenic 45.0%
CTAGAATGCGCGTGATGTTG+TGG + chr5.1:79076319-79076338 None:intergenic 50.0%
CTTTGCAGAGAAACCGCTGA+CGG + chr5.1:79076936-79076955 None:intergenic 50.0%
GAACATGGAGGAGACAAGTG+TGG + chr5.1:79076567-79076586 None:intergenic 50.0%
GTCGATGGCTAGGATGGTTA+TGG + chr5.1:79076420-79076439 None:intergenic 50.0%
TCCTCCATGTTCCAAGCTAC+CGG - chr5.1:79076575-79076594 MS.gene38133:CDS 50.0%
TGAAGGACGGAGATGACGTA+TGG + chr5.1:79076722-79076741 None:intergenic 50.0%
! CGCATTCTAGCTAAACACCC+TGG - chr5.1:79076329-79076348 MS.gene38133:CDS 50.0%
! GGAAAGGTAGTGGTTGAAGG+TGG + chr5.1:79076360-79076379 None:intergenic 50.0%
! GGAGGGAGAGGACATTTTTG+AGG + chr5.1:79076490-79076509 None:intergenic 50.0%
!! GGAGAGGACATTTTTGAGGG+TGG + chr5.1:79076486-79076505 None:intergenic 50.0%
!! GGAGAGGTGTTTGTCTAGGA+GGG + chr5.1:79076459-79076478 None:intergenic 50.0%
!! TGGAGAGGTGTTTGTCTAGG+AGG + chr5.1:79076460-79076479 None:intergenic 50.0%
!! TTTGGTGCCGAAGACAACGA+CGG - chr5.1:79076659-79076678 MS.gene38133:CDS 50.0%
!!! CTCTTTGCTGCTTTTGGTGC+TGG + chr5.1:79077271-79077290 None:intergenic 50.0%
!!! TTTTGAGGGTGGTGATGGAG+AGG + chr5.1:79076475-79076494 None:intergenic 50.0%
AGACATGGCGGCATTGTCGA+TGG + chr5.1:79076435-79076454 None:intergenic 55.0%
CGACTAAGACATGGAGGGAG+AGG + chr5.1:79076502-79076521 None:intergenic 55.0%
GGAGACAAGTGTGGTACCGT+CGG + chr5.1:79076558-79076577 None:intergenic 55.0%
GGATCCGGTAGCTTGGAACA+TGG + chr5.1:79076582-79076601 None:intergenic 55.0%
GGATGAGGATGCAGACTCAC+CGG - chr5.1:79077324-79077343 MS.gene38133:CDS 55.0%
GGCATTGTCGATGGCTAGGA+TGG + chr5.1:79076426-79076445 None:intergenic 55.0%
GGTTGAAGGTGGAGAAGCCA+GGG + chr5.1:79076349-79076368 None:intergenic 55.0%
GTCTAGGAGGGAAGACATGG+CGG + chr5.1:79076447-79076466 None:intergenic 55.0%
GTGTGGTACCGTCGGTGATT+TGG + chr5.1:79076550-79076569 None:intergenic 55.0%
GTTGATCTCATCGGCGAGGT+GGG + chr5.1:79076387-79076406 None:intergenic 55.0%
TCCGGTAGCTTGGAACATGG+AGG + chr5.1:79076579-79076598 None:intergenic 55.0%
TCTGCATCTGGTCCATCTGC+CGG + chr5.1:79077346-79077365 None:intergenic 55.0%
TGGTTGAAGGTGGAGAAGCC+AGG + chr5.1:79076350-79076369 None:intergenic 55.0%
! ATGTCACTTGGAGCTGCCGT+CGG + chr5.1:79076782-79076801 None:intergenic 55.0%
! TGGTACCGTCGGTGATTTGG+TGG + chr5.1:79076547-79076566 None:intergenic 55.0%
!! GGTGGGTGATGGAAAGGTAG+TGG + chr5.1:79076370-79076389 None:intergenic 55.0%
CAAGAAGAAGAAGGCGGCGC+CGG - chr5.1:79077297-79077316 MS.gene38133:CDS 60.0%
CCAACAGATACCGCCGTCAG+CGG - chr5.1:79076920-79076939 MS.gene38133:CDS 60.0%
CGTGATGTTGTGGTTGCCGG+AGG + chr5.1:79076309-79076328 None:intergenic 60.0%
GACGGTTGATCTCATCGGCG+AGG + chr5.1:79076391-79076410 None:intergenic 60.0%
GATGCAGACTCACCGGCAGA+TGG - chr5.1:79077331-79077350 MS.gene38133:CDS 60.0%
GATGTTGTGGTTGCCGGAGG+TGG + chr5.1:79076306-79076325 None:intergenic 60.0%
GCGCGTGATGTTGTGGTTGC+CGG + chr5.1:79076312-79076331 None:intergenic 60.0%
GGTTGATCTCATCGGCGAGG+TGG + chr5.1:79076388-79076407 None:intergenic 60.0%
TGCAGAGAAACCGCTGACGG+CGG + chr5.1:79076933-79076952 None:intergenic 60.0%
TGGCGGCATTGTCGATGGCT+AGG + chr5.1:79076430-79076449 None:intergenic 60.0%
! TCTGCGTCGGCGGAGCTTAA+AGG + chr5.1:79076755-79076774 None:intergenic 60.0%
!!! GCTGCTTTTGGTGCTGGAGC+TGG + chr5.1:79077265-79077284 None:intergenic 60.0%
CCGCTGACGGCGGTATCTGT+TGG + chr5.1:79076923-79076942 None:intergenic 65.0%
CTCATCGGCGAGGTGGGTGA+TGG + chr5.1:79076381-79076400 None:intergenic 65.0%
GACGTAACCGGCGGTTCCAG+CGG + chr5.1:79076606-79076625 None:intergenic 65.0%
GTTGTGGTTGCCGGAGGTGG+CGG + chr5.1:79076303-79076322 None:intergenic 65.0%
TCTGCATCCTCATCCGCCGC+CGG + chr5.1:79077319-79077338 None:intergenic 65.0%
!! CGGCGAGGTGGGTGATGGAA+AGG + chr5.1:79076376-79076395 None:intergenic 65.0%
CAAGCTACCGGATCCGCCGC+TGG - chr5.1:79076587-79076606 MS.gene38133:CDS 70.0%
CAGCGGCGGATCCGGTAGCT+TGG + chr5.1:79076589-79076608 None:intergenic 70.0%
GTAACCGGCGGTTCCAGCGG+CGG + chr5.1:79076603-79076622 None:intergenic 70.0%
TGCCGTCGGCGCTTCTGCGT+CGG + chr5.1:79076768-79076787 None:intergenic 70.0%
! GAAGAAGAAGGCGGCGCCGG+CGG - chr5.1:79077300-79077319 MS.gene38133:CDS 70.0%
ATCGCCGCTGCCGCCACCTC+CGG - chr5.1:79076290-79076309 MS.gene38133:CDS 75.0%
CGTCGGCGCTTCTGCGTCGG+CGG + chr5.1:79076765-79076784 None:intergenic 75.0%
GGATCCGCCGCTGGAACCGC+CGG - chr5.1:79076596-79076615 MS.gene38133:CDS 75.0%
GGCGGTTCCAGCGGCGGATC+CGG + chr5.1:79076597-79076616 None:intergenic 75.0%
! GTTGCCGGAGGTGGCGGCAG+CGG + chr5.1:79076297-79076316 None:intergenic 75.0%
!! CGCCGACGCAGAAGCGCCGA+CGG - chr5.1:79076763-79076782 MS.gene38133:CDS 75.0%
!! GGAGGTGGCGGCAGCGGCGA+TGG + chr5.1:79076291-79076310 None:intergenic 80.0%
!! GGTGGCGGCAGCGGCGATGG+TGG + chr5.1:79076288-79076307 None:intergenic 80.0%
!!! GAAGAAGGCGGCGCCGGCGG+CGG - chr5.1:79077303-79077322 MS.gene38133:CDS 80.0%
!!! GGCGGCGCCGGCGGCGGATG+AGG - chr5.1:79077309-79077328 MS.gene38133:CDS 90.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 79076221 79077483 79076221 ID=MS.gene38133
chr5.1 mRNA 79076221 79077483 79076221 ID=MS.gene38133.t1;Parent=MS.gene38133
chr5.1 exon 79076221 79077483 79076221 ID=MS.gene38133.t1.exon1;Parent=MS.gene38133.t1
chr5.1 CDS 79076221 79077483 79076221 ID=cds.MS.gene38133.t1;Parent=MS.gene38133.t1
Gene Sequence

>MS.gene38133

ATGAAGAAGCAACTAGCACCACTTGTTCTATTTTCCCTCACACTCATATTATCACTCATTCATTCCACCATCGCCGCTGCCGCCACCTCCGGCAACCACAACATCACGCGCATTCTAGCTAAACACCCTGGCTTCTCCACCTTCAACCACTACCTTTCCATCACCCACCTCGCCGATGAGATCAACCGTCGTCAAACCATAACCATCCTAGCCATCGACAATGCCGCCATGTCTTCCCTCCTAGACAAACACCTCTCCATCACCACCCTCAAAAATGTCCTCTCCCTCCATGTCTTAGTCGACTACTTCGGCGCCAAGAAACTCCACCAAATCACCGACGGTACCACACTTGTCTCCTCCATGTTCCAAGCTACCGGATCCGCCGCTGGAACCGCCGGTTACGTCAATATCACAAACCTAAAAGGTGGCAAAGTCGGTTTTGGTGCCGAAGACAACGACGGTCTTCATTCCTTTTACGTAAAATCCGTAGAAGAACTTCCATACGTCATCTCCGTCCTTCAAATCAGTAATCCTTTAAGCTCCGCCGACGCAGAAGCGCCGACGGCAGCTCCAAGTGACATTGATTTAATCGGAATTATGTCAAAACAAGGTTGCCAATCTTTTGCAGATTTGTTACGTGTTTCAAAAGCACTCCCTACTTTCAAAGAATCCGTTGACGGCGGTTTAACTGTTTTCTGTCCAACAGATACCGCCGTCAGCGGTTTCTCTGCAAAGTACAAAAACCTAACAGACTCTCAAAAAGTTTCCCTCCTATTATACCACGGTGTTCCAGTATACCAATCATTACAGATGTTGAAATCAAACAACGGTGTAATGAACACATTAGCAACCGAAGGCCATAACAAATATGATTTCACAGTGCAAAATGATGGTGAAGATGTTAACCTTGAAACCAAAGTTAACACTGCAAATATTGTTGGTACATTAATTGATCAAGATCCTTTTGTAGTGTATAAGATAAGTAAGGTTTTGATGCCAAGAGAATTGTTTAAGGGAGTTAAGGAGGAGAAAGATTTAGCACCAGCTCCAGCACCAAAAGCAGCAAAGAGTAAGAGCAAGAAGAAGAAGGCGGCGCCGGCGGCGGATGAGGATGCAGACTCACCGGCAGATGGACCAGATGCAGATGCAGATTCTGATGATCAGAAAGCTGCTGATGATGAAAATGGAGTTAATGGATTAAATCAAGGGTTGAGATTCATTATGGTATTTTTCAGTTTGTTTATTGGTGCTTTGGTTCTATAA
Protein sequence

>MS.gene38133.t1

MKKQLAPLVLFSLTLILSLIHSTIAAAATSGNHNITRILAKHPGFSTFNHYLSITHLADEINRRQTITILAIDNAAMSSLLDKHLSITTLKNVLSLHVLVDYFGAKKLHQITDGTTLVSSMFQATGSAAGTAGYVNITNLKGGKVGFGAEDNDGLHSFYVKSVEELPYVISVLQISNPLSSADAEAPTAAPSDIDLIGIMSKQGCQSFADLLRVSKALPTFKESVDGGLTVFCPTDTAVSGFSAKYKNLTDSQKVSLLLYHGVPVYQSLQMLKSNNGVMNTLATEGHNKYDFTVQNDGEDVNLETKVNTANIVGTLIDQDPFVVYKISKVLMPRELFKGVKEEKDLAPAPAPKAAKSKSKKKKAAPAADEDADSPADGPDADADSDDQKAADDENGVNGLNQGLRFIMVFFSLFIGALVL