Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38358.t1 | XP_003603058.1 | 96.2 | 373 | 13 | 1 | 1 | 372 | 1 | 373 | 1.50E-207 | 731.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38358.t1 | Q9C635 | 50.4 | 389 | 133 | 11 | 1 | 371 | 1 | 347 | 9.6e-78 | 292.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38358.t1 | G7J6F2 | 96.2 | 373 | 13 | 1 | 1 | 372 | 1 | 373 | 1.1e-207 | 731.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene38358.t1 | TF | HSF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050707 | MS.gene38358 | 0.806742 | 7.10E-50 | -1.69E-46 |
MS.gene053348 | MS.gene38358 | 0.823303 | 1.49E-53 | -1.69E-46 |
MS.gene058128 | MS.gene38358 | 0.820981 | 5.15E-53 | -1.69E-46 |
MS.gene058853 | MS.gene38358 | 0.835061 | 2.09E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38358.t1 | MTR_3g101870 | 96.247 | 373 | 13 | 1 | 1 | 372 | 1 | 373 | 0.0 | 743 |
MS.gene38358.t1 | MTR_5g089170 | 47.337 | 338 | 87 | 11 | 1 | 335 | 1 | 250 | 1.81e-87 | 265 |
MS.gene38358.t1 | MTR_5g010680 | 47.391 | 230 | 107 | 5 | 1 | 228 | 1 | 218 | 8.35e-59 | 194 |
MS.gene38358.t1 | MTR_0020s0020 | 46.429 | 224 | 89 | 5 | 15 | 227 | 24 | 227 | 3.00e-55 | 185 |
MS.gene38358.t1 | MTR_5g017470 | 44.796 | 221 | 85 | 5 | 17 | 229 | 2 | 193 | 5.46e-51 | 172 |
MS.gene38358.t1 | MTR_1g100777 | 42.326 | 215 | 95 | 2 | 16 | 229 | 10 | 196 | 6.84e-51 | 172 |
MS.gene38358.t1 | MTR_7g091370 | 39.744 | 234 | 91 | 5 | 9 | 237 | 2 | 190 | 1.64e-47 | 161 |
MS.gene38358.t1 | MTR_6g043060 | 74.194 | 93 | 24 | 0 | 23 | 115 | 21 | 113 | 3.59e-46 | 160 |
MS.gene38358.t1 | MTR_5g029680 | 72.632 | 95 | 26 | 0 | 21 | 115 | 29 | 123 | 3.31e-44 | 159 |
MS.gene38358.t1 | MTR_7g095680 | 69.388 | 98 | 30 | 0 | 18 | 115 | 43 | 140 | 4.09e-43 | 154 |
MS.gene38358.t1 | MTR_8g083100 | 72.527 | 91 | 25 | 0 | 25 | 115 | 23 | 113 | 1.86e-41 | 152 |
MS.gene38358.t1 | MTR_1g102860 | 65.049 | 103 | 36 | 0 | 18 | 120 | 34 | 136 | 8.60e-41 | 146 |
MS.gene38358.t1 | MTR_1g061170 | 66.667 | 99 | 33 | 0 | 24 | 122 | 49 | 147 | 9.70e-40 | 147 |
MS.gene38358.t1 | MTR_8g087540 | 64.646 | 99 | 34 | 1 | 17 | 115 | 6 | 103 | 2.18e-39 | 144 |
MS.gene38358.t1 | MTR_4g077970 | 42.487 | 193 | 63 | 4 | 24 | 216 | 12 | 156 | 1.03e-38 | 144 |
MS.gene38358.t1 | MTR_1g071360 | 64.078 | 103 | 36 | 1 | 22 | 123 | 30 | 132 | 4.58e-38 | 140 |
MS.gene38358.t1 | MTR_2g100680 | 65.957 | 94 | 32 | 0 | 22 | 115 | 29 | 122 | 6.93e-38 | 141 |
MS.gene38358.t1 | MTR_1g071360 | 64.078 | 103 | 36 | 1 | 22 | 123 | 27 | 129 | 7.86e-38 | 140 |
MS.gene38358.t1 | MTR_6g086805 | 62.105 | 95 | 36 | 0 | 21 | 115 | 8 | 102 | 1.21e-36 | 136 |
MS.gene38358.t1 | MTR_2g100670 | 65.957 | 94 | 32 | 0 | 22 | 115 | 31 | 124 | 2.14e-36 | 134 |
MS.gene38358.t1 | MTR_3g104550 | 56.757 | 111 | 43 | 1 | 18 | 123 | 40 | 150 | 2.22e-36 | 136 |
MS.gene38358.t1 | MTR_2g017890 | 61.000 | 100 | 38 | 1 | 17 | 116 | 9 | 107 | 6.01e-36 | 135 |
MS.gene38358.t1 | MTR_2g100670 | 65.957 | 94 | 32 | 0 | 22 | 115 | 139 | 232 | 2.47e-35 | 134 |
MS.gene38358.t1 | MTR_4g088900 | 58.000 | 100 | 38 | 1 | 21 | 116 | 30 | 129 | 2.09e-34 | 126 |
MS.gene38358.t1 | MTR_8g105780 | 62.766 | 94 | 34 | 1 | 23 | 115 | 21 | 114 | 5.52e-33 | 127 |
MS.gene38358.t1 | MTR_4g045757 | 56.923 | 65 | 28 | 0 | 17 | 81 | 7 | 71 | 1.73e-18 | 79.7 |
MS.gene38358.t1 | MTR_5g047190 | 40.217 | 92 | 48 | 2 | 32 | 116 | 1 | 92 | 3.06e-15 | 71.2 |
MS.gene38358.t1 | MTR_4g011850 | 87.879 | 33 | 4 | 0 | 84 | 116 | 9 | 41 | 6.26e-15 | 71.6 |
MS.gene38358.t1 | MTR_4g011850 | 78.378 | 37 | 8 | 0 | 193 | 229 | 63 | 99 | 5.80e-13 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38358.t1 | AT1G46264 | 55.443 | 395 | 104 | 14 | 1 | 371 | 1 | 347 | 2.43e-120 | 352 |
MS.gene38358.t1 | AT4G11660 | 49.533 | 214 | 105 | 2 | 16 | 227 | 51 | 263 | 9.45e-60 | 197 |
MS.gene38358.t1 | AT5G62020 | 44.726 | 237 | 109 | 4 | 17 | 253 | 16 | 230 | 3.09e-58 | 191 |
MS.gene38358.t1 | AT4G36990 | 45.794 | 214 | 89 | 2 | 17 | 230 | 7 | 193 | 6.52e-54 | 179 |
MS.gene38358.t1 | AT1G32330 | 43.627 | 204 | 54 | 3 | 21 | 216 | 34 | 184 | 1.24e-45 | 163 |
MS.gene38358.t1 | AT1G32330 | 43.627 | 204 | 54 | 3 | 21 | 216 | 34 | 184 | 1.29e-45 | 163 |
MS.gene38358.t1 | AT2G41690 | 41.905 | 210 | 89 | 5 | 22 | 228 | 38 | 217 | 4.58e-45 | 155 |
MS.gene38358.t1 | AT4G17750 | 70.707 | 99 | 29 | 0 | 20 | 118 | 48 | 146 | 4.76e-45 | 162 |
MS.gene38358.t1 | AT3G22830 | 67.000 | 100 | 33 | 0 | 18 | 117 | 55 | 154 | 5.34e-42 | 152 |
MS.gene38358.t1 | AT3G02990 | 61.261 | 111 | 39 | 2 | 8 | 115 | 5 | 114 | 2.36e-40 | 149 |
MS.gene38358.t1 | AT5G03720 | 67.677 | 99 | 32 | 0 | 24 | 122 | 55 | 153 | 2.87e-40 | 147 |
MS.gene38358.t1 | AT5G03720 | 67.677 | 99 | 32 | 0 | 24 | 122 | 55 | 153 | 2.87e-40 | 147 |
MS.gene38358.t1 | AT5G16820 | 68.367 | 98 | 30 | 1 | 20 | 117 | 24 | 120 | 1.37e-39 | 147 |
MS.gene38358.t1 | AT5G16820 | 68.367 | 98 | 30 | 1 | 20 | 117 | 24 | 120 | 1.37e-39 | 147 |
MS.gene38358.t1 | AT5G43840 | 64.356 | 101 | 36 | 0 | 22 | 122 | 17 | 117 | 2.82e-39 | 141 |
MS.gene38358.t1 | AT2G26150 | 65.957 | 94 | 32 | 0 | 22 | 115 | 42 | 135 | 1.94e-38 | 140 |
MS.gene38358.t1 | AT2G26150 | 65.957 | 94 | 32 | 0 | 22 | 115 | 42 | 135 | 1.94e-38 | 140 |
MS.gene38358.t1 | AT3G24520 | 62.245 | 98 | 37 | 0 | 21 | 118 | 14 | 111 | 6.09e-38 | 139 |
MS.gene38358.t1 | AT4G13980 | 67.033 | 91 | 30 | 0 | 25 | 115 | 24 | 114 | 1.04e-37 | 141 |
MS.gene38358.t1 | AT3G51910 | 61.856 | 97 | 37 | 0 | 18 | 114 | 23 | 119 | 2.97e-37 | 135 |
MS.gene38358.t1 | AT3G63350 | 60.825 | 97 | 38 | 0 | 18 | 114 | 22 | 118 | 1.07e-35 | 132 |
MS.gene38358.t1 | AT5G54070 | 59.341 | 91 | 37 | 0 | 24 | 114 | 71 | 161 | 5.17e-34 | 129 |
MS.gene38358.t1 | AT4G18880 | 64.646 | 99 | 34 | 1 | 17 | 115 | 9 | 106 | 1.74e-31 | 123 |
MS.gene38358.t1 | AT1G67970 | 57.732 | 97 | 40 | 1 | 23 | 118 | 18 | 114 | 6.63e-31 | 121 |
MS.gene38358.t1 | AT5G45710 | 59.783 | 92 | 37 | 0 | 24 | 115 | 13 | 104 | 2.93e-30 | 119 |
MS.gene38358.t1 | AT5G45710 | 59.783 | 92 | 37 | 0 | 24 | 115 | 13 | 104 | 2.93e-30 | 119 |
MS.gene38358.t1 | AT4G18870 | 42.553 | 94 | 51 | 1 | 18 | 108 | 137 | 230 | 1.15e-20 | 91.3 |
MS.gene38358.t1 | AT4G18870 | 44.186 | 86 | 43 | 3 | 25 | 108 | 14 | 96 | 3.42e-16 | 78.6 |
MS.gene38358.t1 | AT1G77570 | 38.636 | 88 | 49 | 3 | 25 | 108 | 27 | 113 | 2.25e-12 | 64.7 |
Find 66 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGTTTGTTTCCAAACTATT+TGG | 0.202751 | 3.2:+84790640 | None:intergenic |
AAACAAGGCTCGTTTGGTTT+TGG | 0.245774 | 3.2:-84790623 | MS.gene38358:CDS |
GGATTATTAGATCCACATTC+AGG | 0.261808 | 3.2:+84790661 | None:intergenic |
TGAAGACGAGTCATATGTTT+AGG | 0.266459 | 3.2:+84790835 | None:intergenic |
CTAACTCTAGTGTTTGAAAA+TGG | 0.272288 | 3.2:+84791243 | None:intergenic |
AAGCCAATGAACCAGCTTTC+GGG | 0.281382 | 3.2:-84790874 | MS.gene38358:CDS |
ATCAACAAGTTGGTATGTTT+TGG | 0.282286 | 3.2:+84791743 | None:intergenic |
TTAACTTCATCATTTGTTAA+TGG | 0.296353 | 3.2:-84791159 | MS.gene38358:CDS |
TTAACAAATGATGAAGTTAA+TGG | 0.309297 | 3.2:+84791162 | None:intergenic |
TTGTTGTGTTTGAAGTAGTT+AGG | 0.319993 | 3.2:+84791630 | None:intergenic |
ATCTAATAATCCAAATAGTT+TGG | 0.322798 | 3.2:-84790650 | MS.gene38358:CDS |
AGGAGGTCTCTAGCAAATTC+TGG | 0.338598 | 3.2:+84791654 | None:intergenic |
ATGACTCCACCTTCGTTGTT+TGG | 0.343318 | 3.2:-84791683 | MS.gene38358:CDS |
TAGTTGTTTGTTGCTGTTGT+TGG | 0.344004 | 3.2:+84791129 | None:intergenic |
AAAGCCAATGAACCAGCTTT+CGG | 0.347409 | 3.2:-84790875 | MS.gene38358:CDS |
TGTTGTGTTTGAAGTAGTTA+GGG | 0.361431 | 3.2:+84791631 | None:intergenic |
CACAGATCACATCGTCTCTT+GGG | 0.368339 | 3.2:-84791712 | MS.gene38358:CDS |
GGAAACAAACAAGGCTCGTT+TGG | 0.378669 | 3.2:-84790629 | MS.gene38358:CDS |
GAGCTTCTTGATGTGTTTGT+TGG | 0.386154 | 3.2:+84790772 | None:intergenic |
GAAGACGAGTCATATGTTTA+GGG | 0.405370 | 3.2:+84790836 | None:intergenic |
TAAGAGTTACTTGGAGCTAC+TGG | 0.420379 | 3.2:+84790973 | None:intergenic |
ACATTACCACCACCATTCAT+AGG | 0.425778 | 3.2:+84790910 | None:intergenic |
TAGCCCGAAAGCTGGTTCAT+TGG | 0.429834 | 3.2:+84790871 | None:intergenic |
CCACAGATCACATCGTCTCT+TGG | 0.431871 | 3.2:-84791713 | MS.gene38358:CDS |
TTGTTCATCAGAGTATTCAT+TGG | 0.454805 | 3.2:+84791209 | None:intergenic |
CCACCACCATTCATAGGAGT+TGG | 0.459985 | 3.2:+84790916 | None:intergenic |
CTGATGAACAAGTCAACAAC+TGG | 0.462821 | 3.2:-84791197 | MS.gene38358:CDS |
AGCTCAATAACAATGGTTGA+AGG | 0.469701 | 3.2:-84790754 | MS.gene38358:CDS |
ACATCACAGCCACAACAAAC+AGG | 0.483395 | 3.2:-84791318 | MS.gene38358:CDS |
GATGAAGAGTAAGAGTTACT+TGG | 0.490480 | 3.2:+84790964 | None:intergenic |
TTAGCAAACTCCCATCTGTC+AGG | 0.497806 | 3.2:+84791396 | None:intergenic |
GAAAATGGAAAGAAACTTGG+TGG | 0.498648 | 3.2:+84791258 | None:intergenic |
GATTATTAGATCCACATTCA+GGG | 0.505417 | 3.2:+84790662 | None:intergenic |
GTGGAACATTGTGATGCTGC+TGG | 0.507886 | 3.2:+84791277 | None:intergenic |
TGTGTTTGAAGTAGTTAGGG+AGG | 0.509850 | 3.2:+84791634 | None:intergenic |
TCATCAGAGTATTCATTGGA+TGG | 0.511281 | 3.2:+84791213 | None:intergenic |
GAAAGATTGTACCTGACAGA+TGG | 0.519136 | 3.2:-84791407 | MS.gene38358:CDS |
GTTTGAAGTAGTTAGGGAGG+AGG | 0.523740 | 3.2:+84791637 | None:intergenic |
TCAAATCCAACTCCTATGAA+TGG | 0.530340 | 3.2:-84790922 | MS.gene38358:CDS |
AATTGTAATAGCCCGAAAGC+TGG | 0.534218 | 3.2:+84790863 | None:intergenic |
TTTGAAAATGGAAAGAAACT+TGG | 0.548152 | 3.2:+84791255 | None:intergenic |
TGGTGGTGGTAATGTTTCAA+TGG | 0.548976 | 3.2:-84790902 | MS.gene38358:CDS |
ACTTCATCATTTGTTAATGG+AGG | 0.552014 | 3.2:-84791156 | MS.gene38358:CDS |
CCACAAAATCAATCCCATCA+TGG | 0.552202 | 3.2:-84790811 | MS.gene38358:CDS |
AGTTCACATTCATACCATGA+TGG | 0.552494 | 3.2:+84790797 | None:intergenic |
ATGTTGATTCCTGTTTGTTG+TGG | 0.553850 | 3.2:+84791309 | None:intergenic |
AAAAGAGTGCACCCTGAATG+TGG | 0.555827 | 3.2:-84790673 | MS.gene38358:CDS |
ACAAATGATGAAGTTAATGG+TGG | 0.561209 | 3.2:+84791165 | None:intergenic |
GTTCACATTCATACCATGAT+GGG | 0.572426 | 3.2:+84790798 | None:intergenic |
CCAACTCCTATGAATGGTGG+TGG | 0.572594 | 3.2:-84790916 | MS.gene38358:CDS |
AAAGATTGTACCTGACAGAT+GGG | 0.574158 | 3.2:-84791406 | MS.gene38358:CDS |
GCTCAATAACAATGGTTGAA+GGG | 0.590591 | 3.2:-84790753 | MS.gene38358:CDS |
GGAGTTGGATTTGAAGCTTG+TGG | 0.599678 | 3.2:+84790931 | None:intergenic |
AAAACTAACTAACAAGTGGA+AGG | 0.604739 | 3.2:+84790559 | None:intergenic |
TGGTTGGATCATCAACAAGT+TGG | 0.622309 | 3.2:+84791733 | None:intergenic |
ACAGATCACATCGTCTCTTG+GGG | 0.629510 | 3.2:-84791711 | MS.gene38358:CDS |
ATCAAGAAGCTCAATAACAA+TGG | 0.631659 | 3.2:-84790761 | MS.gene38358:CDS |
GAGACGATGTGATCTGTGGT+TGG | 0.633776 | 3.2:+84791717 | None:intergenic |
AAATAGTTTGGAAACAAACA+AGG | 0.638741 | 3.2:-84790638 | MS.gene38358:CDS |
AGGACGCCAAACAACGAAGG+TGG | 0.642419 | 3.2:+84791677 | None:intergenic |
AATCCAACTCCTATGAATGG+TGG | 0.654630 | 3.2:-84790919 | MS.gene38358:CDS |
ACTAACTAACAAGTGGAAGG+AGG | 0.655564 | 3.2:+84790562 | None:intergenic |
CTTCTACTAGACAACTGTGA+AGG | 0.669455 | 3.2:-84791816 | MS.gene38358:CDS |
AGGTCTCTAGCAAATTCTGG+AGG | 0.693279 | 3.2:+84791657 | None:intergenic |
TGGAGGACGCCAAACAACGA+AGG | 0.695849 | 3.2:+84791674 | None:intergenic |
CCAAGAGACGATGTGATCTG+TGG | 0.707530 | 3.2:+84791713 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTTTTTCTCTGTTTTTTA+GGG | - | chr3.2:84790954-84790973 | MS.gene38358:CDS | 15.0% |
!!! | TTATTTTTTCTCTGTTTTTT+AGG | - | chr3.2:84790953-84790972 | MS.gene38358:CDS | 15.0% |
!! | ATCTAATAATCCAAATAGTT+TGG | - | chr3.2:84791739-84791758 | MS.gene38358:CDS | 20.0% |
!! | GCTAATGAATATTTCAAAAA+AGG | - | chr3.2:84791011-84791030 | MS.gene38358:CDS | 20.0% |
!! | TTAACAAATGATGAAGTTAA+TGG | + | chr3.2:84791230-84791249 | None:intergenic | 20.0% |
!!! | AAAAGATCATGATTTTGATT+TGG | - | chr3.2:84791790-84791809 | MS.gene38358:CDS | 20.0% |
!!! | AAAGATCATGATTTTGATTT+GGG | - | chr3.2:84791791-84791810 | MS.gene38358:CDS | 20.0% |
!!! | TTAACTTCATCATTTGTTAA+TGG | - | chr3.2:84791230-84791249 | MS.gene38358:CDS | 20.0% |
! | AAATAGTTTGGAAACAAACA+AGG | - | chr3.2:84791751-84791770 | MS.gene38358:CDS | 25.0% |
! | TTGTTTGTTTCCAAACTATT+TGG | + | chr3.2:84791752-84791771 | None:intergenic | 25.0% |
! | TTTGAAAATGGAAAGAAACT+TGG | + | chr3.2:84791137-84791156 | None:intergenic | 25.0% |
ACAAATGATGAAGTTAATGG+TGG | + | chr3.2:84791227-84791246 | None:intergenic | 30.0% | |
ATCAAGAAGCTCAATAACAA+TGG | - | chr3.2:84791628-84791647 | MS.gene38358:CDS | 30.0% | |
CTAACTCTAGTGTTTGAAAA+TGG | + | chr3.2:84791149-84791168 | None:intergenic | 30.0% | |
GATTATTAGATCCACATTCA+GGG | + | chr3.2:84791730-84791749 | None:intergenic | 30.0% | |
! | ACTTCATCATTTGTTAATGG+AGG | - | chr3.2:84791233-84791252 | MS.gene38358:CDS | 30.0% |
! | TGTTGTGTTTGAAGTAGTTA+GGG | + | chr3.2:84790761-84790780 | None:intergenic | 30.0% |
! | TTGTTCATCAGAGTATTCAT+TGG | + | chr3.2:84791183-84791202 | None:intergenic | 30.0% |
! | TTGTTGTGTTTGAAGTAGTT+AGG | + | chr3.2:84790762-84790781 | None:intergenic | 30.0% |
!!! | ATCAACAAGTTGGTATGTTT+TGG | + | chr3.2:84790649-84790668 | None:intergenic | 30.0% |
AAAGATTGTACCTGACAGAT+GGG | - | chr3.2:84790983-84791002 | MS.gene38358:CDS | 35.0% | |
AGCTCAATAACAATGGTTGA+AGG | - | chr3.2:84791635-84791654 | MS.gene38358:CDS | 35.0% | |
AGTTCACATTCATACCATGA+TGG | + | chr3.2:84791595-84791614 | None:intergenic | 35.0% | |
GAAAATGGAAAGAAACTTGG+TGG | + | chr3.2:84791134-84791153 | None:intergenic | 35.0% | |
GAAGACGAGTCATATGTTTA+GGG | + | chr3.2:84791556-84791575 | None:intergenic | 35.0% | |
GAAGAGATGATTGCTTACAT+AGG | + | chr3.2:84790814-84790833 | None:intergenic | 35.0% | |
GATGAAGAGTAAGAGTTACT+TGG | + | chr3.2:84791428-84791447 | None:intergenic | 35.0% | |
GCTCAATAACAATGGTTGAA+GGG | - | chr3.2:84791636-84791655 | MS.gene38358:CDS | 35.0% | |
GGATTATTAGATCCACATTC+AGG | + | chr3.2:84791731-84791750 | None:intergenic | 35.0% | |
GTTCACATTCATACCATGAT+GGG | + | chr3.2:84791594-84791613 | None:intergenic | 35.0% | |
TCAAATCCAACTCCTATGAA+TGG | - | chr3.2:84791467-84791486 | MS.gene38358:intron | 35.0% | |
TGAAGACGAGTCATATGTTT+AGG | + | chr3.2:84791557-84791576 | None:intergenic | 35.0% | |
! | TAGTTGTTTGTTGCTGTTGT+TGG | + | chr3.2:84791263-84791282 | None:intergenic | 35.0% |
! | TCATCAGAGTATTCATTGGA+TGG | + | chr3.2:84791179-84791198 | None:intergenic | 35.0% |
!! | ATGTTGATTCCTGTTTGTTG+TGG | + | chr3.2:84791083-84791102 | None:intergenic | 35.0% |
AAAGCCAATGAACCAGCTTT+CGG | - | chr3.2:84791514-84791533 | MS.gene38358:intron | 40.0% | |
AATCCAACTCCTATGAATGG+TGG | - | chr3.2:84791470-84791489 | MS.gene38358:intron | 40.0% | |
AATTGTAATAGCCCGAAAGC+TGG | + | chr3.2:84791529-84791548 | None:intergenic | 40.0% | |
ACATTACCACCACCATTCAT+AGG | + | chr3.2:84791482-84791501 | None:intergenic | 40.0% | |
CCACAAAATCAATCCCATCA+TGG | - | chr3.2:84791578-84791597 | MS.gene38358:intron | 40.0% | |
CTGATGAACAAGTCAACAAC+TGG | - | chr3.2:84791192-84791211 | MS.gene38358:CDS | 40.0% | |
CTTCTACTAGACAACTGTGA+AGG | - | chr3.2:84790573-84790592 | MS.gene38358:CDS | 40.0% | |
GAAAGATTGTACCTGACAGA+TGG | - | chr3.2:84790982-84791001 | MS.gene38358:CDS | 40.0% | |
GAGCTTCTTGATGTGTTTGT+TGG | + | chr3.2:84791620-84791639 | None:intergenic | 40.0% | |
TAAGAGTTACTTGGAGCTAC+TGG | + | chr3.2:84791419-84791438 | None:intergenic | 40.0% | |
TGGTTGGATCATCAACAAGT+TGG | + | chr3.2:84790659-84790678 | None:intergenic | 40.0% | |
! | TGCAGCAAGACTAAGCTTTT+TGG | - | chr3.2:84791674-84791693 | MS.gene38358:CDS | 40.0% |
! | TGTGTTTGAAGTAGTTAGGG+AGG | + | chr3.2:84790758-84790777 | None:intergenic | 40.0% |
!! | AAACAAGGCTCGTTTGGTTT+TGG | - | chr3.2:84791766-84791785 | MS.gene38358:CDS | 40.0% |
!! | CCATGATGGGATTGATTTTG+TGG | + | chr3.2:84791581-84791600 | None:intergenic | 40.0% |
!! | TGGTGGTGGTAATGTTTCAA+TGG | - | chr3.2:84791487-84791506 | MS.gene38358:intron | 40.0% |
!!! | CAAGTTGGTATGTTTTGGTG+AGG | + | chr3.2:84790644-84790663 | None:intergenic | 40.0% |
!!! | TGGTATGTTTTGGTGAGGAA+TGG | + | chr3.2:84790639-84790658 | None:intergenic | 40.0% |
AAGCCAATGAACCAGCTTTC+GGG | - | chr3.2:84791515-84791534 | MS.gene38358:intron | 45.0% | |
ACAGATCACATCGTCTCTTG+GGG | - | chr3.2:84790678-84790697 | MS.gene38358:CDS | 45.0% | |
ACATCACAGCCACAACAAAC+AGG | - | chr3.2:84791071-84791090 | MS.gene38358:CDS | 45.0% | |
AGGAGGTCTCTAGCAAATTC+TGG | + | chr3.2:84790738-84790757 | None:intergenic | 45.0% | |
AGGTCTCTAGCAAATTCTGG+AGG | + | chr3.2:84790735-84790754 | None:intergenic | 45.0% | |
ATGACTCCACCTTCGTTGTT+TGG | - | chr3.2:84790706-84790725 | MS.gene38358:CDS | 45.0% | |
CACAGATCACATCGTCTCTT+GGG | - | chr3.2:84790677-84790696 | MS.gene38358:CDS | 45.0% | |
GGAAACAAACAAGGCTCGTT+TGG | - | chr3.2:84791760-84791779 | MS.gene38358:CDS | 45.0% | |
TAACGAATCGAAGCGACAAG+AGG | + | chr3.2:84790883-84790902 | None:intergenic | 45.0% | |
TTAGCAAACTCCCATCTGTC+AGG | + | chr3.2:84790996-84791015 | None:intergenic | 45.0% | |
! | AAAAGAGTGCACCCTGAATG+TGG | - | chr3.2:84791716-84791735 | MS.gene38358:CDS | 45.0% |
! | GGAGTTGGATTTGAAGCTTG+TGG | + | chr3.2:84791461-84791480 | None:intergenic | 45.0% |
! | GTTTGAAGTAGTTAGGGAGG+AGG | + | chr3.2:84790755-84790774 | None:intergenic | 45.0% |
! | TTCAGGGTGCACTCTTTTCT+TGG | + | chr3.2:84791714-84791733 | None:intergenic | 45.0% |
! | TTTTGGTGAGGAATGGAGCT+GGG | + | chr3.2:84790632-84790651 | None:intergenic | 45.0% |
CCAACTCCTATGAATGGTGG+TGG | - | chr3.2:84791473-84791492 | MS.gene38358:intron | 50.0% | |
CCAAGAGACGATGTGATCTG+TGG | + | chr3.2:84790679-84790698 | None:intergenic | 50.0% | |
CCACAGATCACATCGTCTCT+TGG | - | chr3.2:84790676-84790695 | MS.gene38358:CDS | 50.0% | |
CCACCACCATTCATAGGAGT+TGG | + | chr3.2:84791476-84791495 | None:intergenic | 50.0% | |
GAGACGATGTGATCTGTGGT+TGG | + | chr3.2:84790675-84790694 | None:intergenic | 50.0% | |
GTGGAACATTGTGATGCTGC+TGG | + | chr3.2:84791115-84791134 | None:intergenic | 50.0% | |
! | TAGCCCGAAAGCTGGTTCAT+TGG | + | chr3.2:84791521-84791540 | None:intergenic | 50.0% |
!! | GTTTTGGTGAGGAATGGAGC+TGG | + | chr3.2:84790633-84790652 | None:intergenic | 50.0% |
AGGACGCCAAACAACGAAGG+TGG | + | chr3.2:84790715-84790734 | None:intergenic | 55.0% | |
TGGAGGACGCCAAACAACGA+AGG | + | chr3.2:84790718-84790737 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 84790567 | 84791844 | 84790567 | ID=MS.gene38358 |
chr3.2 | mRNA | 84790567 | 84791844 | 84790567 | ID=MS.gene38358.t1;Parent=MS.gene38358 |
chr3.2 | exon | 84791596 | 84791844 | 84791596 | ID=MS.gene38358.t1.exon1;Parent=MS.gene38358.t1 |
chr3.2 | CDS | 84791596 | 84791844 | 84791596 | ID=cds.MS.gene38358.t1;Parent=MS.gene38358.t1 |
chr3.2 | exon | 84790567 | 84791436 | 84790567 | ID=MS.gene38358.t1.exon2;Parent=MS.gene38358.t1 |
chr3.2 | CDS | 84790567 | 84791436 | 84790567 | ID=cds.MS.gene38358.t1;Parent=MS.gene38358.t1 |
Gene Sequence |
Protein sequence |