Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38570.t1 | XP_013461685.1 | 94.6 | 222 | 12 | 0 | 1 | 222 | 1 | 222 | 3.00E-118 | 434.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38570.t1 | Q9FQA3 | 51.4 | 222 | 107 | 1 | 1 | 221 | 1 | 222 | 1.2e-62 | 241.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38570.t1 | A0A072VC23 | 94.6 | 222 | 12 | 0 | 1 | 222 | 1 | 222 | 2.2e-118 | 434.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052077 | MS.gene38570 | 0.827278 | 1.71E-54 | -1.69E-46 |
| MS.gene054349 | MS.gene38570 | 0.81812 | 2.31E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene38570 | 0.827879 | 1.23E-54 | -1.69E-46 |
| MS.gene058371 | MS.gene38570 | 0.807618 | 4.63E-50 | -1.69E-46 |
| MS.gene059011 | MS.gene38570 | 0.800061 | 1.72E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38570.t1 | MTR_3g099757 | 94.170 | 223 | 13 | 0 | 1 | 223 | 1 | 223 | 6.01e-151 | 418 |
| MS.gene38570.t1 | MTR_4g019780 | 50.476 | 210 | 104 | 0 | 4 | 213 | 7 | 216 | 1.36e-72 | 220 |
| MS.gene38570.t1 | MTR_7g065740 | 48.416 | 221 | 111 | 2 | 4 | 222 | 6 | 225 | 1.38e-71 | 218 |
| MS.gene38570.t1 | MTR_8g087425 | 49.772 | 219 | 106 | 1 | 1 | 215 | 1 | 219 | 5.78e-71 | 216 |
| MS.gene38570.t1 | MTR_7g065720 | 47.273 | 220 | 113 | 2 | 4 | 221 | 6 | 224 | 3.69e-70 | 214 |
| MS.gene38570.t1 | MTR_4g019790 | 46.222 | 225 | 117 | 3 | 1 | 222 | 1 | 224 | 3.73e-70 | 214 |
| MS.gene38570.t1 | MTR_7g065600 | 50.228 | 219 | 107 | 2 | 4 | 221 | 6 | 223 | 7.50e-70 | 213 |
| MS.gene38570.t1 | MTR_6g080440 | 51.042 | 192 | 94 | 0 | 19 | 210 | 17 | 208 | 1.32e-69 | 213 |
| MS.gene38570.t1 | MTR_7g065660 | 48.182 | 220 | 112 | 2 | 4 | 222 | 6 | 224 | 5.94e-69 | 211 |
| MS.gene38570.t1 | MTR_7g065590 | 46.847 | 222 | 116 | 2 | 1 | 221 | 3 | 223 | 3.75e-68 | 209 |
| MS.gene38570.t1 | MTR_1g090150 | 45.045 | 222 | 119 | 2 | 4 | 223 | 2 | 222 | 9.88e-68 | 207 |
| MS.gene38570.t1 | MTR_7g065750 | 47.511 | 221 | 113 | 3 | 4 | 222 | 6 | 225 | 1.96e-67 | 207 |
| MS.gene38570.t1 | MTR_8g087410 | 46.635 | 208 | 111 | 0 | 1 | 208 | 2 | 209 | 1.35e-66 | 205 |
| MS.gene38570.t1 | MTR_7g065630 | 48.182 | 220 | 108 | 3 | 4 | 222 | 24 | 238 | 1.38e-65 | 202 |
| MS.gene38570.t1 | MTR_1g115195 | 49.048 | 210 | 100 | 3 | 6 | 210 | 4 | 211 | 1.96e-65 | 202 |
| MS.gene38570.t1 | MTR_1g090060 | 48.309 | 207 | 101 | 4 | 6 | 208 | 4 | 208 | 2.70e-65 | 201 |
| MS.gene38570.t1 | MTR_7g065290 | 47.867 | 211 | 108 | 2 | 4 | 213 | 6 | 215 | 4.61e-65 | 201 |
| MS.gene38570.t1 | MTR_7g065270 | 48.815 | 211 | 106 | 2 | 4 | 213 | 6 | 215 | 2.75e-64 | 199 |
| MS.gene38570.t1 | MTR_1g090070 | 43.891 | 221 | 119 | 3 | 6 | 222 | 10 | 229 | 9.55e-64 | 197 |
| MS.gene38570.t1 | MTR_7g065265 | 47.664 | 214 | 106 | 3 | 4 | 216 | 6 | 214 | 5.34e-62 | 193 |
| MS.gene38570.t1 | MTR_1g090100 | 43.891 | 221 | 117 | 4 | 5 | 220 | 2 | 220 | 1.16e-61 | 192 |
| MS.gene38570.t1 | MTR_7g065710 | 49.010 | 202 | 97 | 3 | 6 | 206 | 5 | 201 | 1.75e-61 | 192 |
| MS.gene38570.t1 | MTR_5g040430 | 44.651 | 215 | 113 | 2 | 6 | 214 | 8 | 222 | 2.19e-61 | 191 |
| MS.gene38570.t1 | MTR_7g065230 | 47.032 | 219 | 109 | 3 | 4 | 221 | 6 | 218 | 2.58e-61 | 191 |
| MS.gene38570.t1 | MTR_4g059730 | 46.047 | 215 | 112 | 3 | 3 | 214 | 2 | 215 | 6.04e-61 | 190 |
| MS.gene38570.t1 | MTR_7g065260 | 47.059 | 221 | 112 | 3 | 4 | 223 | 13 | 229 | 2.88e-60 | 189 |
| MS.gene38570.t1 | MTR_7g065640 | 43.182 | 220 | 105 | 2 | 4 | 222 | 6 | 206 | 2.65e-59 | 186 |
| MS.gene38570.t1 | MTR_7g065680 | 47.273 | 220 | 110 | 3 | 4 | 222 | 6 | 220 | 2.57e-57 | 181 |
| MS.gene38570.t1 | MTR_1g090090 | 43.519 | 216 | 114 | 4 | 6 | 218 | 4 | 214 | 4.16e-57 | 181 |
| MS.gene38570.t1 | MTR_2g070150 | 44.390 | 205 | 111 | 2 | 3 | 206 | 2 | 204 | 3.46e-56 | 177 |
| MS.gene38570.t1 | MTR_7g065700 | 49.510 | 204 | 97 | 3 | 4 | 206 | 6 | 204 | 1.61e-55 | 177 |
| MS.gene38570.t1 | MTR_5g037380 | 41.150 | 226 | 125 | 3 | 1 | 218 | 1 | 226 | 1.44e-52 | 169 |
| MS.gene38570.t1 | MTR_2g070180 | 41.262 | 206 | 118 | 2 | 3 | 207 | 2 | 205 | 8.64e-52 | 167 |
| MS.gene38570.t1 | MTR_2g070200 | 43.810 | 210 | 113 | 5 | 3 | 209 | 2 | 209 | 7.98e-51 | 164 |
| MS.gene38570.t1 | MTR_2g070120 | 38.532 | 218 | 128 | 3 | 3 | 216 | 2 | 217 | 9.04e-51 | 164 |
| MS.gene38570.t1 | MTR_8g061950 | 41.256 | 223 | 123 | 3 | 1 | 215 | 1 | 223 | 1.64e-50 | 164 |
| MS.gene38570.t1 | MTR_2g070140 | 43.979 | 191 | 104 | 2 | 18 | 207 | 1 | 189 | 1.81e-50 | 163 |
| MS.gene38570.t1 | MTR_2g070210 | 40.000 | 220 | 125 | 5 | 3 | 218 | 2 | 218 | 2.31e-50 | 163 |
| MS.gene38570.t1 | MTR_2g070130 | 40.291 | 206 | 120 | 3 | 3 | 207 | 2 | 205 | 2.55e-49 | 160 |
| MS.gene38570.t1 | MTR_4g124130 | 45.161 | 217 | 111 | 7 | 4 | 216 | 3 | 215 | 1.45e-45 | 151 |
| MS.gene38570.t1 | MTR_2g070060 | 37.327 | 217 | 133 | 3 | 3 | 218 | 2 | 216 | 2.60e-45 | 150 |
| MS.gene38570.t1 | MTR_3g467420 | 45.556 | 180 | 96 | 2 | 2 | 180 | 6 | 184 | 3.49e-45 | 150 |
| MS.gene38570.t1 | MTR_3g467430 | 47.561 | 164 | 85 | 1 | 1 | 163 | 5 | 168 | 6.40e-45 | 149 |
| MS.gene38570.t1 | MTR_8g056940 | 47.531 | 162 | 84 | 1 | 3 | 163 | 2 | 163 | 4.47e-44 | 147 |
| MS.gene38570.t1 | MTR_5g076900 | 37.037 | 216 | 133 | 2 | 3 | 217 | 4 | 217 | 1.13e-40 | 139 |
| MS.gene38570.t1 | MTR_2g070070 | 37.788 | 217 | 132 | 3 | 3 | 218 | 2 | 216 | 4.79e-40 | 137 |
| MS.gene38570.t1 | MTR_2g070110 | 37.788 | 217 | 131 | 4 | 3 | 218 | 2 | 215 | 4.97e-37 | 129 |
| MS.gene38570.t1 | MTR_0186s0030 | 47.101 | 138 | 72 | 1 | 3 | 139 | 2 | 139 | 6.32e-37 | 126 |
| MS.gene38570.t1 | MTR_2g072120 | 50.000 | 58 | 28 | 1 | 49 | 105 | 2 | 59 | 3.68e-17 | 73.6 |
| MS.gene38570.t1 | MTR_5g037390 | 39.726 | 73 | 41 | 1 | 29 | 98 | 11 | 83 | 1.60e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38570.t1 | AT2G29420 | 43.891 | 221 | 124 | 0 | 3 | 223 | 7 | 227 | 3.14e-67 | 206 |
| MS.gene38570.t1 | AT3G09270 | 46.818 | 220 | 115 | 2 | 4 | 221 | 5 | 224 | 3.25e-67 | 206 |
| MS.gene38570.t1 | AT2G29460 | 44.749 | 219 | 120 | 1 | 4 | 221 | 6 | 224 | 2.51e-63 | 196 |
| MS.gene38570.t1 | AT2G29480 | 45.238 | 210 | 114 | 1 | 4 | 212 | 6 | 215 | 5.12e-62 | 193 |
| MS.gene38570.t1 | AT2G29490 | 42.009 | 219 | 126 | 1 | 4 | 221 | 6 | 224 | 3.38e-60 | 189 |
| MS.gene38570.t1 | AT2G29470 | 43.541 | 209 | 116 | 2 | 4 | 210 | 6 | 214 | 7.24e-59 | 185 |
| MS.gene38570.t1 | AT2G29450 | 41.818 | 220 | 126 | 2 | 4 | 221 | 5 | 224 | 9.33e-58 | 182 |
| MS.gene38570.t1 | AT2G29440 | 40.000 | 220 | 131 | 1 | 3 | 221 | 4 | 223 | 1.25e-57 | 182 |
| MS.gene38570.t1 | AT1G10370 | 41.364 | 220 | 120 | 4 | 1 | 212 | 1 | 219 | 5.78e-53 | 170 |
| MS.gene38570.t1 | AT1G78370 | 43.333 | 210 | 116 | 3 | 8 | 216 | 7 | 214 | 1.13e-52 | 169 |
| MS.gene38570.t1 | AT1G78340 | 45.977 | 174 | 93 | 1 | 3 | 175 | 2 | 175 | 7.27e-52 | 167 |
| MS.gene38570.t1 | AT1G78320 | 40.553 | 217 | 124 | 4 | 4 | 218 | 3 | 216 | 1.70e-51 | 166 |
| MS.gene38570.t1 | AT5G62480 | 38.053 | 226 | 131 | 2 | 4 | 220 | 7 | 232 | 2.03e-50 | 164 |
| MS.gene38570.t1 | AT1G78380 | 40.465 | 215 | 125 | 3 | 3 | 216 | 2 | 214 | 7.35e-50 | 162 |
| MS.gene38570.t1 | AT1G17170 | 43.478 | 207 | 113 | 4 | 3 | 208 | 2 | 205 | 9.46e-50 | 162 |
| MS.gene38570.t1 | AT1G74590 | 38.767 | 227 | 126 | 4 | 6 | 223 | 8 | 230 | 1.20e-49 | 162 |
| MS.gene38570.t1 | AT1G59670 | 40.455 | 220 | 123 | 4 | 4 | 215 | 5 | 224 | 2.39e-48 | 159 |
| MS.gene38570.t1 | AT1G17190 | 39.631 | 217 | 128 | 3 | 1 | 216 | 1 | 215 | 4.69e-48 | 157 |
| MS.gene38570.t1 | AT1G59700 | 42.523 | 214 | 115 | 4 | 4 | 209 | 5 | 218 | 4.81e-48 | 158 |
| MS.gene38570.t1 | AT1G10360 | 36.530 | 219 | 132 | 3 | 1 | 212 | 1 | 219 | 1.05e-47 | 157 |
| MS.gene38570.t1 | AT1G17180 | 39.908 | 218 | 126 | 4 | 3 | 218 | 2 | 216 | 9.47e-47 | 154 |
| MS.gene38570.t1 | AT1G69930 | 40.376 | 213 | 121 | 3 | 6 | 212 | 13 | 225 | 2.36e-46 | 154 |
| MS.gene38570.t1 | AT3G43800 | 39.640 | 222 | 127 | 4 | 1 | 217 | 1 | 220 | 7.62e-45 | 149 |
| MS.gene38570.t1 | AT1G27130 | 39.450 | 218 | 124 | 4 | 3 | 212 | 4 | 221 | 9.66e-45 | 149 |
| MS.gene38570.t1 | AT1G53680 | 45.238 | 168 | 89 | 2 | 6 | 170 | 8 | 175 | 1.27e-42 | 144 |
| MS.gene38570.t1 | AT1G78360 | 47.500 | 160 | 81 | 3 | 6 | 162 | 5 | 164 | 1.81e-42 | 143 |
| MS.gene38570.t1 | AT1G69920 | 38.889 | 216 | 124 | 4 | 5 | 212 | 34 | 249 | 1.78e-40 | 139 |
| MS.gene38570.t1 | AT1G27140 | 37.037 | 216 | 127 | 4 | 3 | 209 | 4 | 219 | 9.23e-38 | 132 |
| MS.gene38570.t1 | AT1G78320 | 34.722 | 216 | 111 | 4 | 4 | 218 | 3 | 189 | 1.98e-35 | 124 |
| MS.gene38570.t1 | AT5G62480 | 31.111 | 225 | 122 | 2 | 4 | 220 | 7 | 206 | 9.86e-34 | 120 |
| MS.gene38570.t1 | AT5G62480 | 31.111 | 225 | 121 | 2 | 4 | 220 | 7 | 205 | 1.20e-33 | 120 |
Find 53 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTCACGTTACTAGGGTTC+TGG | 0.230426 | 3.2:-82828597 | MS.gene38570:CDS |
| AGAGGGCCAAGGCGCGATTT+TGG | 0.235373 | 3.2:-82828339 | MS.gene38570:CDS |
| TAAAATCTTCTTCAACATAT+TGG | 0.276929 | 3.2:+82828518 | None:intergenic |
| TCGCGCCTTGGCCCTCTCAT+AGG | 0.290203 | 3.2:+82828345 | None:intergenic |
| AAGTGGGCTCTTGAACTAAA+AGG | 0.296086 | 3.2:-82828550 | MS.gene38570:CDS |
| GGAGACTCACTCACGTTACT+AGG | 0.328682 | 3.2:-82828604 | MS.gene38570:CDS |
| GGCGTGCATTCTTTGATAAC+AGG | 0.364374 | 3.2:+82827696 | None:intergenic |
| AATCACTAGTGATTCTGATA+TGG | 0.369693 | 3.2:+82828420 | None:intergenic |
| ACAGGTACCTTCTTATAAAC+AGG | 0.378107 | 3.2:+82828463 | None:intergenic |
| GGCTTTGCTGATATTGCTGT+TGG | 0.390337 | 3.2:-82827828 | MS.gene38570:CDS |
| TTCCCTCAAGTCCACTTTCA+AGG | 0.391350 | 3.2:+82827877 | None:intergenic |
| CACTTGACCCTCAGGACAAA+TGG | 0.402811 | 3.2:+82828568 | None:intergenic |
| GGCTAAATTCGCCGATGATA+AGG | 0.406052 | 3.2:-82828317 | MS.gene38570:intron |
| ATCCTTGAAAGTGGACTTGA+GGG | 0.416245 | 3.2:-82827879 | MS.gene38570:CDS |
| CCATGGACTCTGTATCAATC+AGG | 0.416951 | 3.2:+82827757 | None:intergenic |
| CTTGAGGGAAGGCGCTACTT+TGG | 0.416974 | 3.2:-82827864 | MS.gene38570:CDS |
| TAGAGTATGTTGATGAGATC+TGG | 0.424571 | 3.2:-82828396 | MS.gene38570:CDS |
| TACTTTGGAGGTGAAAATAT+AGG | 0.440103 | 3.2:-82827849 | MS.gene38570:CDS |
| TTACCGTCATGCACAAGAAC+AGG | 0.465185 | 3.2:+82828445 | None:intergenic |
| CGCGCCTTGGCCCTCTCATA+GGG | 0.469964 | 3.2:+82828346 | None:intergenic |
| AGTGGGCTCTTGAACTAAAA+GGG | 0.471204 | 3.2:-82828549 | MS.gene38570:CDS |
| ACTCACGTTACTAGGGTTCT+GGG | 0.475091 | 3.2:-82828596 | MS.gene38570:CDS |
| GAGGGAAGGCGCTACTTTGG+AGG | 0.487384 | 3.2:-82827861 | MS.gene38570:CDS |
| GCTTTGCTGATATTGCTGTT+GGG | 0.489214 | 3.2:-82827827 | MS.gene38570:CDS |
| CAAGAGCCCACTTGACCCTC+AGG | 0.492284 | 3.2:+82828560 | None:intergenic |
| GGGTAGTCCATTTGTCCTGA+GGG | 0.524592 | 3.2:-82828575 | MS.gene38570:CDS |
| CCTGATTGATACAGAGTCCA+TGG | 0.533258 | 3.2:-82827757 | MS.gene38570:CDS |
| AATTTGAAGATCCTTGAAAG+TGG | 0.535582 | 3.2:-82827888 | MS.gene38570:CDS |
| GGGGTAGTCCATTTGTCCTG+AGG | 0.544193 | 3.2:-82828576 | MS.gene38570:CDS |
| GTATAATCCTGTTTATAAGA+AGG | 0.544339 | 3.2:-82828470 | MS.gene38570:CDS |
| TTTAGCCCAAAATCGCGCCT+TGG | 0.545817 | 3.2:+82828333 | None:intergenic |
| AAGAAAGTCATCGAAGTAAG+TGG | 0.546614 | 3.2:+82827725 | None:intergenic |
| CATTTGTCCTGAGGGTCAAG+TGG | 0.551709 | 3.2:-82828567 | MS.gene38570:CDS |
| ATTTGTCCTGAGGGTCAAGT+GGG | 0.573803 | 3.2:-82828566 | MS.gene38570:CDS |
| GCCCTCTCATAGGGATCATG+TGG | 0.575393 | 3.2:+82828355 | None:intergenic |
| TAGGGATCATGTGGAAGAAG+AGG | 0.575719 | 3.2:+82828364 | None:intergenic |
| GAGACTCACTCACGTTACTA+GGG | 0.583299 | 3.2:-82828603 | MS.gene38570:CDS |
| GATCCTTGAAAGTGGACTTG+AGG | 0.587591 | 3.2:-82827880 | MS.gene38570:CDS |
| GTAAGTGGTAAGTTTAGCCA+TGG | 0.594981 | 3.2:+82827740 | None:intergenic |
| AATAGGAGAGGAACAACAGA+AGG | 0.601970 | 3.2:-82827931 | MS.gene38570:CDS |
| TCCACATGATCCCTATGAGA+GGG | 0.621697 | 3.2:-82828356 | MS.gene38570:CDS |
| ATGAAGATGTCAAGACCTTG+TGG | 0.622264 | 3.2:+82827637 | None:intergenic |
| GTGGGCTCTTGAACTAAAAG+GGG | 0.630143 | 3.2:-82828548 | MS.gene38570:CDS |
| TTCCACATGATCCCTATGAG+AGG | 0.630417 | 3.2:-82828357 | MS.gene38570:CDS |
| TTGAAAGTGGACTTGAGGGA+AGG | 0.636293 | 3.2:-82827875 | MS.gene38570:CDS |
| GCACAGCAAGGCCTTCCACA+AGG | 0.644456 | 3.2:-82827652 | MS.gene38570:CDS |
| AGATGTCAAGACCTTGTGGA+AGG | 0.645290 | 3.2:+82827641 | None:intergenic |
| CTCACGTTACTAGGGTTCTG+GGG | 0.648274 | 3.2:-82828595 | MS.gene38570:CDS |
| TCAAGTAACTTATCATGAGA+CGG | 0.652385 | 3.2:+82827675 | None:intergenic |
| TGATCCCTATGAGAGGGCCA+AGG | 0.658261 | 3.2:-82828350 | MS.gene38570:CDS |
| TAAGTTACTTGAGCACAGCA+AGG | 0.675812 | 3.2:-82827664 | MS.gene38570:CDS |
| GTACCTGTTCTTGTGCATGA+CGG | 0.690851 | 3.2:-82828448 | MS.gene38570:CDS |
| CGAGTGATAGAAGAAACTGT+AGG | 0.708991 | 3.2:-82827786 | MS.gene38570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATCTTCTTCAACATAT+TGG | + | chr3.2:82827724-82827743 | None:intergenic | 20.0% |
| !!! | AATATGTTGAAGAAGATTTT+AGG | - | chr3.2:82827723-82827742 | MS.gene38570:CDS | 20.0% |
| !!! | CTTTTGAGTAATAGTTTAAT+TGG | + | chr3.2:82828105-82828124 | None:intergenic | 20.0% |
| ! | GTATAATCCTGTTTATAAGA+AGG | - | chr3.2:82827769-82827788 | MS.gene38570:CDS | 25.0% |
| !!! | ATAGCTACCTTTTTCAAAAT+AGG | - | chr3.2:82828291-82828310 | MS.gene38570:intron | 25.0% |
| AAAAAGGTAGCTATAAATGC+TGG | + | chr3.2:82828285-82828304 | None:intergenic | 30.0% | |
| AATCACTAGTGATTCTGATA+TGG | + | chr3.2:82827822-82827841 | None:intergenic | 30.0% | |
| AATTTGAAGATCCTTGAAAG+TGG | - | chr3.2:82828351-82828370 | MS.gene38570:CDS | 30.0% | |
| TCAAGTAACTTATCATGAGA+CGG | + | chr3.2:82828567-82828586 | None:intergenic | 30.0% | |
| ! | ATCATGTTCTTTAGAAGTCA+TGG | + | chr3.2:82827956-82827975 | None:intergenic | 30.0% |
| ! | TACTTTGGAGGTGAAAATAT+AGG | - | chr3.2:82828390-82828409 | MS.gene38570:CDS | 30.0% |
| ! | TGGCTTTTATACCTTATCAT+CGG | + | chr3.2:82827936-82827955 | None:intergenic | 30.0% |
| !! | TTCCTCTCCTATTTTGAAAA+AGG | + | chr3.2:82828301-82828320 | None:intergenic | 30.0% |
| !!! | AAGGTTGGTTTTTGTATTAG+AGG | + | chr3.2:82828245-82828264 | None:intergenic | 30.0% |
| !!! | TACCTTTTTCAAAATAGGAG+AGG | - | chr3.2:82828296-82828315 | MS.gene38570:intron | 30.0% |
| AAGAAAGTCATCGAAGTAAG+TGG | + | chr3.2:82828517-82828536 | None:intergenic | 35.0% | |
| ACAGGTACCTTCTTATAAAC+AGG | + | chr3.2:82827779-82827798 | None:intergenic | 35.0% | |
| CACACTGAAATAGAAAAGGT+TGG | + | chr3.2:82828260-82828279 | None:intergenic | 35.0% | |
| GATCAAACCAAACATCAAGT+TGG | + | chr3.2:82828012-82828031 | None:intergenic | 35.0% | |
| ! | TAGAGTATGTTGATGAGATC+TGG | - | chr3.2:82827843-82827862 | MS.gene38570:CDS | 35.0% |
| !! | TTGGTTTTTGTATTAGAGGC+TGG | + | chr3.2:82828241-82828260 | None:intergenic | 35.0% |
| !!! | GATATTGCTGTTGGGTTTTT+TGG | - | chr3.2:82828420-82828439 | MS.gene38570:CDS | 35.0% |
| !!! | TGTTGGGTTTTTTGGATTCT+GGG | - | chr3.2:82828428-82828447 | MS.gene38570:CDS | 35.0% |
| AAGAACATGATCAAACCGTC+TGG | - | chr3.2:82827965-82827984 | MS.gene38570:CDS | 40.0% | |
| AATAGGAGAGGAACAACAGA+AGG | - | chr3.2:82828308-82828327 | MS.gene38570:intron | 40.0% | |
| AGTCTCAACATTTCGATCTC+TGG | - | chr3.2:82828123-82828142 | MS.gene38570:intron | 40.0% | |
| ATGAAGATGTCAAGACCTTG+TGG | + | chr3.2:82828605-82828624 | None:intergenic | 40.0% | |
| CCAGAAACCAACTTGATGTT+TGG | - | chr3.2:82828002-82828021 | MS.gene38570:intron | 40.0% | |
| CGAGTGATAGAAGAAACTGT+AGG | - | chr3.2:82828453-82828472 | MS.gene38570:CDS | 40.0% | |
| GGCACACACTGAAATAGAAA+AGG | + | chr3.2:82828264-82828283 | None:intergenic | 40.0% | |
| GTAAGTGGTAAGTTTAGCCA+TGG | + | chr3.2:82828502-82828521 | None:intergenic | 40.0% | |
| GTTCAACCATTTGAACCAGA+CGG | + | chr3.2:82827983-82828002 | None:intergenic | 40.0% | |
| TAAGTTACTTGAGCACAGCA+AGG | - | chr3.2:82828575-82828594 | MS.gene38570:CDS | 40.0% | |
| ! | AAGTGGGCTCTTGAACTAAA+AGG | - | chr3.2:82827689-82827708 | MS.gene38570:CDS | 40.0% |
| ! | AGTGGGCTCTTGAACTAAAA+GGG | - | chr3.2:82827690-82827709 | MS.gene38570:CDS | 40.0% |
| ! | ATCAAACCGTCTGGTTCAAA+TGG | - | chr3.2:82827974-82827993 | MS.gene38570:intron | 40.0% |
| ! | ATCCTTGAAAGTGGACTTGA+GGG | - | chr3.2:82828360-82828379 | MS.gene38570:CDS | 40.0% |
| ! | GCTTTGCTGATATTGCTGTT+GGG | - | chr3.2:82828412-82828431 | MS.gene38570:CDS | 40.0% |
| !! | CCAAACATCAAGTTGGTTTC+TGG | + | chr3.2:82828005-82828024 | None:intergenic | 40.0% |
| !!! | CTGTTGGGTTTTTTGGATTC+TGG | - | chr3.2:82828427-82828446 | MS.gene38570:CDS | 40.0% |
| ACTCACGTTACTAGGGTTCT+GGG | - | chr3.2:82827643-82827662 | MS.gene38570:CDS | 45.0% | |
| AGATGTCAAGACCTTGTGGA+AGG | + | chr3.2:82828601-82828620 | None:intergenic | 45.0% | |
| ATTTGTCCTGAGGGTCAAGT+GGG | - | chr3.2:82827673-82827692 | MS.gene38570:CDS | 45.0% | |
| CCATGGACTCTGTATCAATC+AGG | + | chr3.2:82828485-82828504 | None:intergenic | 45.0% | |
| CCTGATTGATACAGAGTCCA+TGG | - | chr3.2:82828482-82828501 | MS.gene38570:CDS | 45.0% | |
| GAGACTCACTCACGTTACTA+GGG | - | chr3.2:82827636-82827655 | MS.gene38570:CDS | 45.0% | |
| GGCTAAATTCGCCGATGATA+AGG | - | chr3.2:82827922-82827941 | MS.gene38570:CDS | 45.0% | |
| GGCTTTGCTGATATTGCTGT+TGG | - | chr3.2:82828411-82828430 | MS.gene38570:CDS | 45.0% | |
| GTACCTGTTCTTGTGCATGA+CGG | - | chr3.2:82827791-82827810 | MS.gene38570:CDS | 45.0% | |
| GTGGGCTCTTGAACTAAAAG+GGG | - | chr3.2:82827691-82827710 | MS.gene38570:CDS | 45.0% | |
| TAGGGATCATGTGGAAGAAG+AGG | + | chr3.2:82827878-82827897 | None:intergenic | 45.0% | |
| TCCACATGATCCCTATGAGA+GGG | - | chr3.2:82827883-82827902 | MS.gene38570:CDS | 45.0% | |
| TTACCGTCATGCACAAGAAC+AGG | + | chr3.2:82827797-82827816 | None:intergenic | 45.0% | |
| TTCCACATGATCCCTATGAG+AGG | - | chr3.2:82827882-82827901 | MS.gene38570:CDS | 45.0% | |
| TTCCCTCAAGTCCACTTTCA+AGG | + | chr3.2:82828365-82828384 | None:intergenic | 45.0% | |
| ! | GATCCTTGAAAGTGGACTTG+AGG | - | chr3.2:82828359-82828378 | MS.gene38570:CDS | 45.0% |
| ! | GGCGTGCATTCTTTGATAAC+AGG | + | chr3.2:82828546-82828565 | None:intergenic | 45.0% |
| ! | TTGAAAGTGGACTTGAGGGA+AGG | - | chr3.2:82828364-82828383 | MS.gene38570:CDS | 45.0% |
| CACTCACGTTACTAGGGTTC+TGG | - | chr3.2:82827642-82827661 | MS.gene38570:CDS | 50.0% | |
| CACTTGACCCTCAGGACAAA+TGG | + | chr3.2:82827674-82827693 | None:intergenic | 50.0% | |
| CATTTGTCCTGAGGGTCAAG+TGG | - | chr3.2:82827672-82827691 | MS.gene38570:CDS | 50.0% | |
| CTCACGTTACTAGGGTTCTG+GGG | - | chr3.2:82827644-82827663 | MS.gene38570:CDS | 50.0% | |
| GGAGACTCACTCACGTTACT+AGG | - | chr3.2:82827635-82827654 | MS.gene38570:CDS | 50.0% | |
| GGGTAGTCCATTTGTCCTGA+GGG | - | chr3.2:82827664-82827683 | MS.gene38570:CDS | 50.0% | |
| TTTAGCCCAAAATCGCGCCT+TGG | + | chr3.2:82827909-82827928 | None:intergenic | 50.0% | |
| GCCCTCTCATAGGGATCATG+TGG | + | chr3.2:82827887-82827906 | None:intergenic | 55.0% | |
| GGGGTAGTCCATTTGTCCTG+AGG | - | chr3.2:82827663-82827682 | MS.gene38570:CDS | 55.0% | |
| TGATCCCTATGAGAGGGCCA+AGG | - | chr3.2:82827889-82827908 | MS.gene38570:CDS | 55.0% | |
| !! | CTTGAGGGAAGGCGCTACTT+TGG | - | chr3.2:82828375-82828394 | MS.gene38570:CDS | 55.0% |
| CAAGAGCCCACTTGACCCTC+AGG | + | chr3.2:82827682-82827701 | None:intergenic | 60.0% | |
| GCACAGCAAGGCCTTCCACA+AGG | - | chr3.2:82828587-82828606 | MS.gene38570:CDS | 60.0% | |
| ! | AGAGGGCCAAGGCGCGATTT+TGG | - | chr3.2:82827900-82827919 | MS.gene38570:CDS | 60.0% |
| ! | GAGGGCCAAGGCGCGATTTT+GGG | - | chr3.2:82827901-82827920 | MS.gene38570:CDS | 60.0% |
| !! | GAGGGAAGGCGCTACTTTGG+AGG | - | chr3.2:82828378-82828397 | MS.gene38570:CDS | 60.0% |
| CGCGCCTTGGCCCTCTCATA+GGG | + | chr3.2:82827896-82827915 | None:intergenic | 65.0% | |
| TCGCGCCTTGGCCCTCTCAT+AGG | + | chr3.2:82827897-82827916 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 82827629 | 82828632 | 82827629 | ID=MS.gene38570 |
| chr3.2 | mRNA | 82827629 | 82828632 | 82827629 | ID=MS.gene38570.t1;Parent=MS.gene38570 |
| chr3.2 | exon | 82828318 | 82828632 | 82828318 | ID=MS.gene38570.t1.exon1;Parent=MS.gene38570.t1 |
| chr3.2 | CDS | 82828318 | 82828632 | 82828318 | ID=cds.MS.gene38570.t1;Parent=MS.gene38570.t1 |
| chr3.2 | exon | 82827629 | 82827985 | 82827629 | ID=MS.gene38570.t1.exon2;Parent=MS.gene38570.t1 |
| chr3.2 | CDS | 82827629 | 82827985 | 82827629 | ID=cds.MS.gene38570.t1;Parent=MS.gene38570.t1 |
| Gene Sequence |
| Protein sequence |
