AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054349


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054349.t1 MTR_6g041980 96.584 322 11 0 1 322 24 345 0.0 647
MS.gene054349.t1 MTR_6g041980 94.064 219 13 0 1 219 24 242 8.05e-154 432
MS.gene054349.t1 MTR_6g053550 32.296 257 157 7 47 287 41 296 1.49e-30 118
MS.gene054349.t1 MTR_3g077410 29.615 260 166 7 47 291 41 298 8.68e-28 110
MS.gene054349.t1 MTR_4g105310 28.616 318 191 10 1 291 1 309 5.68e-27 108
MS.gene054349.t1 MTR_1g100395 30.224 268 159 8 46 293 32 291 1.58e-26 107
MS.gene054349.t1 MTR_1g100315 28.571 259 163 5 46 287 32 285 3.83e-26 105
MS.gene054349.t1 MTR_8g099995 28.881 277 178 8 29 287 19 294 6.96e-25 102
MS.gene054349.t1 MTR_8g098415 28.295 258 171 6 47 291 33 289 4.01e-24 100
MS.gene054349.t1 MTR_8g098415 28.295 258 171 6 47 291 33 289 4.45e-24 100
MS.gene054349.t1 MTR_1g100335 28.458 253 167 6 46 285 32 283 7.05e-24 99.8
MS.gene054349.t1 MTR_1g068970 27.562 283 186 7 47 310 38 320 2.09e-22 95.9
MS.gene054349.t1 MTR_7g099850 26.923 260 171 5 47 290 38 294 3.60e-22 95.1
MS.gene054349.t1 MTR_6g053600 30.233 215 137 5 47 248 27 241 1.09e-21 93.6
MS.gene054349.t1 MTR_4g105310 27.574 272 166 8 1 250 1 263 4.74e-21 91.3
MS.gene054349.t1 MTR_1g100305 28.235 255 169 6 46 287 32 285 1.05e-20 90.9
MS.gene054349.t1 MTR_1g100335 28.500 200 134 4 46 236 32 231 9.62e-20 87.4
MS.gene054349.t1 MTR_1g100335 28.643 199 133 4 47 236 33 231 9.85e-20 87.8
MS.gene054349.t1 MTR_8g098415 28.571 203 131 6 102 291 31 232 8.98e-19 84.7
MS.gene054349.t1 MTR_8g098415 28.161 174 118 2 47 213 33 206 1.08e-16 78.2
MS.gene054349.t1 MTR_3g091070 25.862 290 170 7 22 286 18 287 1.57e-15 76.3
MS.gene054349.t1 MTR_1g068970 26.316 228 149 7 102 310 26 253 3.84e-15 74.3
MS.gene054349.t1 MTR_3g009190 25.000 304 187 10 15 286 33 327 4.02e-15 75.5
MS.gene054349.t1 MTR_3g009190 25.000 304 187 10 15 286 51 345 4.37e-15 75.5
MS.gene054349.t1 MTR_4g087460 25.000 292 160 9 43 288 21 299 2.32e-13 70.1
MS.gene054349.t1 MTR_6g453040 26.531 196 130 5 15 201 33 223 2.37e-13 69.3
MS.gene054349.t1 MTR_6g453040 24.092 303 191 9 15 286 11 305 2.90e-13 70.1
MS.gene054349.t1 MTR_6g081020 26.482 253 166 9 41 276 59 308 5.40e-13 69.3
MS.gene054349.t1 MTR_6g453040 26.531 196 130 5 15 201 33 223 8.08e-13 68.2
MS.gene054349.t1 MTR_8g044240 36.559 93 59 0 39 131 67 159 1.97e-12 67.4
MS.gene054349.t1 MTR_2g079710 26.316 228 133 7 47 243 90 313 1.16e-11 65.5
MS.gene054349.t1 MTR_8g031940 25.914 301 158 11 40 286 3 292 2.67e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054349.t1 AT4G09750 76.875 320 74 0 1 320 1 320 0.0 533
MS.gene054349.t1 AT5G50130 31.298 262 158 8 47 290 40 297 1.24e-29 115
MS.gene054349.t1 AT5G50130 31.034 261 158 8 48 290 8 264 7.43e-29 113
MS.gene054349.t1 AT5G50130 30.916 262 156 9 48 290 8 263 1.01e-27 110
MS.gene054349.t1 AT4G11410 29.921 254 166 5 46 287 32 285 9.78e-27 107
MS.gene054349.t1 AT4G24050 28.859 298 182 10 32 303 17 310 3.22e-26 106
MS.gene054349.t1 AT5G50130 30.088 226 138 6 47 259 40 258 2.00e-25 102
MS.gene054349.t1 AT5G50130 31.081 222 135 6 47 254 40 257 2.62e-25 103
MS.gene054349.t1 AT5G50130 31.169 231 138 7 48 261 8 234 1.04e-24 101
MS.gene054349.t1 AT5G50130 29.956 227 136 7 47 259 40 257 2.84e-24 99.8
MS.gene054349.t1 AT5G50130 30.942 223 133 7 47 254 40 256 2.97e-24 100
MS.gene054349.t1 AT4G23420 29.231 260 161 7 46 287 32 286 7.28e-24 99.8
MS.gene054349.t1 AT4G23420 29.231 260 161 7 46 287 32 286 7.28e-24 99.8
MS.gene054349.t1 AT4G23420 29.231 260 161 7 46 287 49 303 8.56e-24 100
MS.gene054349.t1 AT5G50130 31.034 232 136 8 48 261 8 233 1.49e-23 98.6
MS.gene054349.t1 AT4G11410 30.000 200 131 3 46 236 32 231 1.74e-23 97.8
MS.gene054349.t1 AT4G23430 27.907 258 167 6 46 287 32 286 2.01e-23 98.6
MS.gene054349.t1 AT4G24050 29.075 227 142 6 32 240 17 242 2.54e-22 94.7
MS.gene054349.t1 AT4G23430 26.953 256 170 5 46 287 32 284 5.15e-22 94.7
MS.gene054349.t1 AT1G64590 26.515 264 171 6 47 291 38 297 1.19e-20 91.3
MS.gene054349.t1 AT4G23420 30.500 200 130 4 46 236 32 231 1.55e-20 89.7
MS.gene054349.t1 AT4G23420 30.653 199 129 4 47 236 33 231 1.78e-20 89.4
MS.gene054349.t1 AT4G23430 27.559 254 163 6 46 287 32 276 2.49e-20 90.1
MS.gene054349.t1 AT2G37540 30.000 260 158 8 46 287 36 289 3.09e-20 89.7
MS.gene054349.t1 AT4G23430 26.587 252 166 5 46 287 32 274 8.54e-19 85.5
MS.gene054349.t1 AT5G02540 26.848 257 169 6 60 300 50 303 1.61e-18 85.1
MS.gene054349.t1 AT2G37540 31.250 208 126 6 46 240 36 239 3.04e-17 80.5
MS.gene054349.t1 AT5G61830 27.241 290 157 8 43 290 36 313 1.79e-16 79.0
MS.gene054349.t1 AT5G61830 27.241 290 157 8 43 290 36 313 1.79e-16 79.0
MS.gene054349.t1 AT3G59710 26.937 271 164 10 43 286 47 310 6.38e-16 77.4
MS.gene054349.t1 AT3G59710 26.937 271 164 10 43 286 18 281 7.44e-16 77.0
MS.gene054349.t1 AT3G59710 27.306 271 163 11 43 286 28 291 9.98e-16 76.6
MS.gene054349.t1 AT5G15940 28.000 275 152 9 46 286 63 325 1.18e-14 74.3
MS.gene054349.t1 AT5G15940 28.000 275 152 9 46 286 63 325 1.18e-14 74.3
MS.gene054349.t1 AT5G15940 28.000 275 152 9 46 286 62 324 1.23e-14 74.3
MS.gene054349.t1 AT5G04070 26.545 275 156 7 46 286 61 323 9.47e-14 71.6
MS.gene054349.t1 AT4G27760 26.829 246 162 8 46 276 60 302 1.18e-12 68.6
MS.gene054349.t1 AT5G15940 27.099 262 147 8 46 273 63 314 2.48e-12 67.0
MS.gene054349.t1 AT5G53090 26.255 259 169 7 46 294 59 305 7.29e-12 65.9
MS.gene054349.t1 AT1G01800 25.168 298 153 10 47 289 8 290 7.38e-11 62.4

Find 74 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCGATCCTTGGCATCTCTT+TGG 0.230680 6.1:-23538685 MS.gene054349:CDS
TATTCCGAGAGCAGCTTTAA+TGG 0.263425 6.1:-23540063 MS.gene054349:CDS
AGGTTGCACTAACAGAAAAT+TGG 0.277567 6.1:-23539334 MS.gene054349:CDS
CTAATTAATTACAGGCTTGC+AGG 0.288075 6.1:-23538881 MS.gene054349:intron
TCGATCCTTGGCATCTCTTT+GGG 0.303905 6.1:-23538684 MS.gene054349:CDS
ATATCAAGTCACTGGCTTCC+AGG 0.317618 6.1:-23541085 MS.gene054349:CDS
TCTCAAATTCAGACTAAAAC+TGG 0.322617 6.1:-23541594 MS.gene054349:CDS
AGCATTAAATGAAAGGTGTT+TGG 0.325335 6.1:+23538751 None:intergenic
CACAGTTACCTGTAGATCTT+TGG 0.325674 6.1:+23540155 None:intergenic
CGTGTCATTACTGTTTCTTC+TGG 0.335143 6.1:-23540201 MS.gene054349:CDS
AACTTTGCTGTCAATGTATT+AGG 0.347400 6.1:-23540282 MS.gene054349:CDS
CTATCTTGTATGTCGTAATA+AGG 0.351461 6.1:-23541637 MS.gene054349:CDS
ACATGGAGACAAACTGCTTT+TGG 0.355048 6.1:-23543661 MS.gene054349:CDS
CCAGATACCAACTTCTCCTT+TGG 0.367870 6.1:+23538803 None:intergenic
AAGGCGCGGACACGGTTATC+TGG 0.368865 6.1:-23538838 MS.gene054349:CDS
GGTTGCACTAACAGAAAATT+GGG 0.372940 6.1:-23539333 MS.gene054349:CDS
TGCTCGAAACAAGCGTGTTC+AGG 0.379609 6.1:-23540028 MS.gene054349:intron
TCTCACAATGTTTCTTATCA+AGG 0.380949 6.1:-23543783 None:intergenic
CATTGATAGTCTTCGATCCT+TGG 0.381103 6.1:-23538696 MS.gene054349:CDS
CCAAAGGAGAAGTTGGTATC+TGG 0.391733 6.1:-23538803 MS.gene054349:CDS
GAGAAGAATTGCATCGTAAC+AGG 0.397382 6.1:-23541808 MS.gene054349:CDS
GCATTAAATGAAAGGTGTTT+GGG 0.399601 6.1:+23538752 None:intergenic
TGCATCAAGGTTAACAATGC+TGG 0.401264 6.1:-23540679 MS.gene054349:intron
ATTCCGAGAGCAGCTTTAAT+GGG 0.404809 6.1:-23540062 MS.gene054349:CDS
ATTTGTGTTTCTGTTTCCTC+TGG 0.412827 6.1:+23541835 None:intergenic
CCAGGTTGGGCTGACACTCC+TGG 0.413309 6.1:-23539266 MS.gene054349:CDS
CAATCAAAATGTGTATTTAG+AGG 0.414226 6.1:-23541571 MS.gene054349:intron
ACAGTAATGACACGTGCATC+AGG 0.419282 6.1:+23540210 None:intergenic
TTACGCCATGACTGAACTAA+TGG 0.419887 6.1:-23540256 MS.gene054349:CDS
TACATACAGAAAAGCAGGTT+TGG 0.423098 6.1:+23543615 None:intergenic
GTTACGATGCAATTCTTCTC+TGG 0.429603 6.1:+23541811 None:intergenic
TTACTCGATGCATCCAGGTT+GGG 0.430651 6.1:-23539279 MS.gene054349:CDS
ACAGGAGCAAACTCTGGAAT+TGG 0.433631 6.1:-23541790 MS.gene054349:CDS
TAATTTACCAACACGTGCAC+TGG 0.441948 6.1:+23541044 None:intergenic
GTCATTACTGTTTCTTCTGG+TGG 0.452728 6.1:-23540198 MS.gene054349:CDS
GAAATTACATACAGAAAAGC+AGG 0.485423 6.1:+23543610 None:intergenic
TCCCTTGACCAAAGATCTAC+AGG 0.490363 6.1:-23540163 MS.gene054349:intron
GTGAAACATTCAAGAACAAA+GGG 0.496141 6.1:-23539310 MS.gene054349:CDS
AAGCTTAGAACAAGCGAAGA+AGG 0.497019 6.1:-23538857 MS.gene054349:CDS
TTTACTCGATGCATCCAGGT+TGG 0.504519 6.1:-23539280 MS.gene054349:CDS
CCAGGAGTGTCAGCCCAACC+TGG 0.529866 6.1:+23539266 None:intergenic
CTTGTTTCGAGCATACTGTA+AGG 0.535266 6.1:+23540038 None:intergenic
CGCGGACACGGTTATCTGGT+TGG 0.542504 6.1:-23538834 MS.gene054349:CDS
ACCTGTAGATCTTTGGTCAA+GGG 0.546962 6.1:+23540162 None:intergenic
CTTTCATTTAATGCTACAAG+TGG 0.547346 6.1:-23538743 MS.gene054349:CDS
TAATTAATTACAGGCTTGCA+GGG 0.550954 6.1:-23538880 MS.gene054349:intron
ATTGGTTATGCGGCAGCTGA+AGG 0.553460 6.1:-23541772 MS.gene054349:CDS
AATCGAGTTACCACATCAGA+AGG 0.554238 6.1:-23540643 MS.gene054349:CDS
ACTACAACCAAAGGAGAAGT+TGG 0.556290 6.1:-23538810 MS.gene054349:CDS
TTCTAAGAATTTCAAACCAG+AGG 0.557905 6.1:-23541851 MS.gene054349:CDS
TACCTGTAGATCTTTGGTCA+AGG 0.568894 6.1:+23540161 None:intergenic
CACTTGTAGCATTAAATGAA+AGG 0.577862 6.1:+23538744 None:intergenic
ATCGTAACAGGAGCAAACTC+TGG 0.579578 6.1:-23541796 MS.gene054349:CDS
ACATTCAAGAACAAAGGGAT+AGG 0.585695 6.1:-23539305 MS.gene054349:CDS
TTGTGATCTGTCATCTGTCA+CGG 0.588486 6.1:-23541108 MS.gene054349:CDS
GGTGAAACATTCAAGAACAA+AGG 0.589992 6.1:-23539311 MS.gene054349:CDS
TTAAGCCCAAAGAGATGCCA+AGG 0.590082 6.1:+23538679 None:intergenic
AAGCGAAGAAGGCGCGGACA+CGG 0.590204 6.1:-23538846 MS.gene054349:CDS
CGGTACCATTAGTTCAGTCA+TGG 0.593296 6.1:+23540251 None:intergenic
AAAGACTCACCCTTCTGATG+TGG 0.596679 6.1:+23540633 None:intergenic
CAGTAATGACACGTGCATCA+GGG 0.598705 6.1:+23540211 None:intergenic
TGTCACGGATATCAAGTCAC+TGG 0.604843 6.1:-23541093 MS.gene054349:CDS
GGGGAAGCTTTCTCAAGTAA+CGG 0.611555 6.1:+23540231 None:intergenic
GGTCCCATTAAAGCTGCTCT+CGG 0.614033 6.1:+23540059 None:intergenic
CTGGTTGGCACTACAACCAA+AGG 0.614640 6.1:-23538819 MS.gene054349:CDS
AGTAATGACACGTGCATCAG+GGG 0.621348 6.1:+23540212 None:intergenic
GAATGTTCCAGTGCACGTGT+TGG 0.626224 6.1:-23541051 MS.gene054349:intron
TCGTAATAAGGAGAGAGGAG+AGG 0.632019 6.1:-23541625 MS.gene054349:CDS
TAGAACAAGCGAAGAAGGCG+CGG 0.636188 6.1:-23538852 MS.gene054349:CDS
GTATGTCGTAATAAGGAGAG+AGG 0.651473 6.1:-23541630 MS.gene054349:CDS
ATCGAGTTACCACATCAGAA+GGG 0.661312 6.1:-23540642 MS.gene054349:intron
AAACTCTGGAATTGGTTATG+CGG 0.681764 6.1:-23541782 MS.gene054349:CDS
CAGCTGAAGGACTTGCACAG+CGG 0.704085 6.1:-23541759 MS.gene054349:intron
GTTGCACTAACAGAAAATTG+GGG 0.760563 6.1:-23539332 MS.gene054349:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTAATAAATGATTAAAAA+TGG + chr6.1:23538883-23538902 None:intergenic 10.0%
!! AACTTAATATAAAAAACTTA+CGG - chr6.1:23541609-23541628 MS.gene054349:CDS 10.0%
!! ATGAAAATAATTATTGTTAT+TGG - chr6.1:23539490-23539509 MS.gene054349:intron 10.0%
!!! TATTAACAATTTTGTTAATT+TGG - chr6.1:23541271-23541290 MS.gene054349:intron 10.0%
!! AAAAACATAATCAAGTATTT+AGG - chr6.1:23539145-23539164 MS.gene054349:intron 15.0%
!! AATTTAGCACATTAATTTAT+AGG - chr6.1:23538993-23539012 MS.gene054349:intron 15.0%
!! ACATTCAAAAATAAATGAAA+CGG + chr6.1:23540414-23540433 None:intergenic 15.0%
!! ACTTAATATAAAAAACTTAC+GGG - chr6.1:23541610-23541629 MS.gene054349:CDS 15.0%
!! TCATAATAATTCTTAGAATT+TGG + chr6.1:23540191-23540210 None:intergenic 15.0%
!! TTTAATGAAATGTGAAATTA+AGG + chr6.1:23538716-23538735 None:intergenic 15.0%
!!! ATCATCATTATATATCTTTT+AGG + chr6.1:23538906-23538925 None:intergenic 15.0%
!!! ATTTTCATAATCATAATACT+AGG + chr6.1:23539478-23539497 None:intergenic 15.0%
!!! CTTATTTTCTTCAAATAAAA+TGG + chr6.1:23541660-23541679 None:intergenic 15.0%
!!! TTATCTTTTGTTATAAAAAG+AGG - chr6.1:23541111-23541130 MS.gene054349:CDS 15.0%
!! AACATAGTAAATGTTAATAC+TGG + chr6.1:23540364-23540383 None:intergenic 20.0%
!! ATTATGCAACAAATATATAG+AGG - chr6.1:23539766-23539785 MS.gene054349:intron 20.0%
!! ATTATTTGTTTCATGCAAAT+TGG - chr6.1:23538737-23538756 MS.gene054349:CDS 20.0%
!! ATTCTCTTGAAAATCTAATA+TGG - chr6.1:23541743-23541762 MS.gene054349:intron 20.0%
!! TAAAGTAAGTAAATTCAAAC+AGG + chr6.1:23540933-23540952 None:intergenic 20.0%
!! TAGGACAAAAATATCAATTT+AGG - chr6.1:23539012-23539031 MS.gene054349:intron 20.0%
!! TATGAAAAAACAACTTATGA+AGG + chr6.1:23539271-23539290 None:intergenic 20.0%
!! TGAATTTAGTGATAAAAAAG+CGG - chr6.1:23539098-23539117 MS.gene054349:intron 20.0%
!! TGATTATTAAAACCATTCAT+GGG - chr6.1:23543287-23543306 MS.gene054349:intron 20.0%
!! TTGATTATTAAAACCATTCA+TGG - chr6.1:23543286-23543305 MS.gene054349:intron 20.0%
!! TTTCAAATAGAAAACTATAG+AGG + chr6.1:23541978-23541997 None:intergenic 20.0%
!!! AATAATCAATAGGTTTTCTA+CGG + chr6.1:23543275-23543294 None:intergenic 20.0%
!!! AGATTTTCAAGAGAATAAAT+TGG + chr6.1:23541739-23541758 None:intergenic 20.0%
!!! ATGCAAATTTTGTGATATAT+TGG - chr6.1:23543091-23543110 MS.gene054349:intron 20.0%
!!! GAATGGTTTTAATAATCAAT+AGG + chr6.1:23543285-23543304 None:intergenic 20.0%
!!! GTACTGATATTTTAAATTCA+AGG - chr6.1:23542471-23542490 MS.gene054349:intron 20.0%
!!! TAAAAAGTCTAATATGCTTT+TGG + chr6.1:23541218-23541237 None:intergenic 20.0%
!!! TCATTTATTTTTGAATGTTG+AGG - chr6.1:23540416-23540435 MS.gene054349:intron 20.0%
! AAAATTCCAGAAACAAACAT+CGG + chr6.1:23540736-23540755 None:intergenic 25.0%
! AGGATAATTCAGATGATTAT+AGG - chr6.1:23539032-23539051 MS.gene054349:intron 25.0%
! AGTTAGTATAATGATTGAGA+TGG - chr6.1:23539900-23539919 MS.gene054349:intron 25.0%
! ATCATTGAATTTCTTAAGTC+AGG - chr6.1:23538961-23538980 MS.gene054349:intron 25.0%
! CAAAAATAGTTGCTATAAGT+TGG - chr6.1:23539546-23539565 MS.gene054349:intron 25.0%
! CAAAATAAGTTCAAACCAAA+CGG + chr6.1:23539173-23539192 None:intergenic 25.0%
! CAACTAACTCAATCATTTAT+AGG - chr6.1:23542335-23542354 MS.gene054349:intron 25.0%
! CAATCAAAATGTGTATTTAG+AGG - chr6.1:23540884-23540903 MS.gene054349:intron 25.0%
! CAATTGCATATCACAAAAAA+TGG - chr6.1:23541928-23541947 MS.gene054349:intron 25.0%
! GAATTTAGTGATAAAAAAGC+GGG - chr6.1:23539099-23539118 MS.gene054349:intron 25.0%
! GTACATAATCATTAGGATTT+AGG + chr6.1:23543550-23543569 None:intergenic 25.0%
! TAAAATAAGCTAATCCAAAC+AGG - chr6.1:23539362-23539381 MS.gene054349:intron 25.0%
! TAACCTCTATTCAAGAAATA+AGG + chr6.1:23543006-23543025 None:intergenic 25.0%
! TTTAGTTATATGCTAATCTG+TGG - chr6.1:23540766-23540785 MS.gene054349:intron 25.0%
!! AAAAAGAAGGAAACGAATTT+TGG + chr6.1:23540301-23540320 None:intergenic 25.0%
!! AATCCTTATTTCTTGAATAG+AGG - chr6.1:23543000-23543019 MS.gene054349:intron 25.0%
!! TGAATTTAGCACATTAGTTT+AGG - chr6.1:23539068-23539087 MS.gene054349:intron 25.0%
!! TGAGACTTTTATAAGTTTGA+AGG - chr6.1:23539965-23539984 MS.gene054349:intron 25.0%
!! TTATTTCTTGAATAGAGGTT+AGG - chr6.1:23543005-23543024 MS.gene054349:intron 25.0%
!! TTTTATAAGTTTGAAGGATG+TGG - chr6.1:23539971-23539990 MS.gene054349:intron 25.0%
!!! GTATTCCGTTATTTCATTTT+TGG + chr6.1:23541516-23541535 None:intergenic 25.0%
!!! TAATATGCTTTTGGTAGTTA+CGG + chr6.1:23541209-23541228 None:intergenic 25.0%
AAGAATCTGACTTCAATTCT+TGG + chr6.1:23543488-23543507 None:intergenic 30.0%
ACAAAAAAATCGCATTGTAG+TGG - chr6.1:23542675-23542694 MS.gene054349:intron 30.0%
AGATAAGCATTAAGACTTTG+AGG + chr6.1:23540231-23540250 None:intergenic 30.0%
ATCCAAACAGGCTAATTTAT+AGG - chr6.1:23539374-23539393 MS.gene054349:intron 30.0%
CAAATAGAAAACTATAGAGG+CGG + chr6.1:23541975-23541994 None:intergenic 30.0%
CAAGGATTATAGTCTCATAA+TGG + chr6.1:23543402-23543421 None:intergenic 30.0%
CACATATCATTAGTCAACAT+AGG + chr6.1:23539520-23539539 None:intergenic 30.0%
CACTTGTAGCATTAAATGAA+AGG + chr6.1:23543714-23543733 None:intergenic 30.0%
CATTATACTAACTTGAGCAT+TGG + chr6.1:23539893-23539912 None:intergenic 30.0%
CGTCACCAAAAATGAAATAA+CGG - chr6.1:23541508-23541527 MS.gene054349:intron 30.0%
CTATCTTGTATGTCGTAATA+AGG - chr6.1:23540818-23540837 MS.gene054349:intron 30.0%
CTGATACCATCTTATAACTT+GGG + chr6.1:23539597-23539616 None:intergenic 30.0%
CTTAAACCCAAGTTATAAGA+TGG - chr6.1:23539588-23539607 MS.gene054349:intron 30.0%
CTTTCATTTAATGCTACAAG+TGG - chr6.1:23543712-23543731 MS.gene054349:intron 30.0%
GAAATTACATACAGAAAAGC+AGG + chr6.1:23538848-23538867 None:intergenic 30.0%
GTAGGTATGAAGATGTTTAT+TGG - chr6.1:23539707-23539726 MS.gene054349:intron 30.0%
GTGAAACATTCAAGAACAAA+GGG - chr6.1:23543145-23543164 MS.gene054349:intron 30.0%
GTTGACAACATTAGTCATTA+TGG + chr6.1:23542728-23542747 None:intergenic 30.0%
GTTGACTAATGATATGTGAT+AGG - chr6.1:23539522-23539541 MS.gene054349:intron 30.0%
TAATGATTGAGATGGATGAA+AGG - chr6.1:23539908-23539927 MS.gene054349:intron 30.0%
TAATTAATTACAGGCTTGCA+GGG - chr6.1:23543575-23543594 MS.gene054349:intron 30.0%
TAGGTCAGTACATAATCATT+AGG + chr6.1:23543557-23543576 None:intergenic 30.0%
TATAATCCTTGATTTCGTAG+CGG - chr6.1:23543411-23543430 MS.gene054349:intron 30.0%
TATAGAGGATCTTACAATGT+TGG - chr6.1:23539781-23539800 MS.gene054349:intron 30.0%
TCTCAAATTCAGACTAAAAC+TGG - chr6.1:23540861-23540880 MS.gene054349:intron 30.0%
TCTGATACCATCTTATAACT+TGG + chr6.1:23539598-23539617 None:intergenic 30.0%
TGGAACAATTTATTGCATCA+AGG - chr6.1:23541763-23541782 MS.gene054349:CDS 30.0%
! AACTTTGCTGTCAATGTATT+AGG - chr6.1:23542173-23542192 MS.gene054349:intron 30.0%
! GGACTTTTGTATATTGCTTA+TGG - chr6.1:23541631-23541650 MS.gene054349:CDS 30.0%
! GTACTGACCTAATTAATTAC+AGG - chr6.1:23543566-23543585 MS.gene054349:intron 30.0%
! TATTGCCACCAATTCTTTTA+GGG - chr6.1:23540907-23540926 MS.gene054349:intron 30.0%
! TGTTTCTATTTGAACAGACA+TGG - chr6.1:23538777-23538796 MS.gene054349:CDS 30.0%
! TTCCTATAAATTAGCCTGTT+TGG + chr6.1:23539379-23539398 None:intergenic 30.0%
! TTCTAAGAATTTCAAACCAG+AGG - chr6.1:23540604-23540623 MS.gene054349:intron 30.0%
!! AGCATTAAATGAAAGGTGTT+TGG + chr6.1:23543707-23543726 None:intergenic 30.0%
!! CATGTGACTTTTATTTCTTG+GGG - chr6.1:23543436-23543455 MS.gene054349:intron 30.0%
!! GCATGTGACTTTTATTTCTT+GGG - chr6.1:23543435-23543454 MS.gene054349:intron 30.0%
!! GCATTAAATGAAAGGTGTTT+GGG + chr6.1:23543706-23543725 None:intergenic 30.0%
!! TCTATCGTAGATTTGTTGTT+AGG - chr6.1:23539619-23539638 MS.gene054349:intron 30.0%
!!! AAGTCAAACTGTTTTGATGT+AGG + chr6.1:23541087-23541106 None:intergenic 30.0%
AAGTTTGAAGGATGTGGTAT+TGG - chr6.1:23539977-23539996 MS.gene054349:intron 35.0%
AATTCTTGGAGTCGTGTATT+TGG + chr6.1:23543474-23543493 None:intergenic 35.0%
ACATCATCATCACTCAAGTT+AGG + chr6.1:23539946-23539965 None:intergenic 35.0%
ACATTCAAGAACAAAGGGAT+AGG - chr6.1:23543150-23543169 MS.gene054349:intron 35.0%
ACTCAAACCTGGAAAAGAAT+AGG + chr6.1:23542151-23542170 None:intergenic 35.0%
AGAAACAAACATCGGAAGAA+AGG + chr6.1:23540728-23540747 None:intergenic 35.0%
AGGTTGCACTAACAGAAAAT+TGG - chr6.1:23543121-23543140 MS.gene054349:intron 35.0%
AGTTTGAAGGATGTGGTATT+GGG - chr6.1:23539978-23539997 MS.gene054349:intron 35.0%
ATAATCCTTGATTTCGTAGC+GGG - chr6.1:23543412-23543431 MS.gene054349:intron 35.0%
ATTCTTGGAGTCGTGTATTT+GGG + chr6.1:23543473-23543492 None:intergenic 35.0%
CATACCTACTATTGAACATC+TGG + chr6.1:23539696-23539715 None:intergenic 35.0%
CATCAATAGCTATGAAACAC+TGG + chr6.1:23542607-23542626 None:intergenic 35.0%
CCTTTCCTACATTTGTAACT+CGG + chr6.1:23542933-23542952 None:intergenic 35.0%
CGAGTTACAAATGTAGGAAA+GGG - chr6.1:23542931-23542950 MS.gene054349:intron 35.0%
CGATTTAGGCTAAACTATTG+CGG + chr6.1:23542051-23542070 None:intergenic 35.0%
CGGGTAATTCAGATGATTAT+AGG - chr6.1:23539118-23539137 MS.gene054349:intron 35.0%
CTAATTAATTACAGGCTTGC+AGG - chr6.1:23543574-23543593 MS.gene054349:intron 35.0%
CTCAAATTATGTTGACGTGT+CGG - chr6.1:23542555-23542574 MS.gene054349:intron 35.0%
CTGCAAGCCTGTAATTAATT+AGG + chr6.1:23543576-23543595 None:intergenic 35.0%
CTTATCTTAGCACACAACAT+TGG - chr6.1:23540244-23540263 MS.gene054349:CDS 35.0%
CTTCGGAATAACCAGTAATA+TGG - chr6.1:23540023-23540042 MS.gene054349:intron 35.0%
CTTTCCTACATTTGTAACTC+GGG + chr6.1:23542932-23542951 None:intergenic 35.0%
GAAAAGAAAGATTCTGTGTG+TGG - chr6.1:23539812-23539831 MS.gene054349:intron 35.0%
GATTTAGGCTAAACTATTGC+GGG + chr6.1:23542050-23542069 None:intergenic 35.0%
GGTGAAACATTCAAGAACAA+AGG - chr6.1:23543144-23543163 MS.gene054349:intron 35.0%
GGTTGCACTAACAGAAAATT+GGG - chr6.1:23543122-23543141 MS.gene054349:intron 35.0%
GTTGCACTAACAGAAAATTG+GGG - chr6.1:23543123-23543142 MS.gene054349:intron 35.0%
TACATACAGAAAAGCAGGTT+TGG + chr6.1:23538843-23538862 None:intergenic 35.0%
TGTGATATATTGGAAATGCC+AGG - chr6.1:23543101-23543120 MS.gene054349:intron 35.0%
TGTTCCAGATGTTCAATAGT+AGG - chr6.1:23539689-23539708 MS.gene054349:intron 35.0%
TTGAATAGAGGTTAGGACTT+AGG - chr6.1:23543012-23543031 MS.gene054349:intron 35.0%
TTGTATCACTATTCAGTCAC+AGG + chr6.1:23542773-23542792 None:intergenic 35.0%
TTGTTTCGCGAAAAACGATT+TGG + chr6.1:23542011-23542030 None:intergenic 35.0%
TTTCCTACATTTGTAACTCG+GGG + chr6.1:23542931-23542950 None:intergenic 35.0%
TTTCTTCCGATGTTTGTTTC+TGG - chr6.1:23540727-23540746 MS.gene054349:intron 35.0%
! AACATTCTTTTCGGAAAACC+TGG + chr6.1:23541391-23541410 None:intergenic 35.0%
! AATTTTCTGTTAGTGCAACC+TGG + chr6.1:23543122-23543141 None:intergenic 35.0%
! ATTTGTGTTTCTGTTTCCTC+TGG + chr6.1:23540623-23540642 None:intergenic 35.0%
! GAGTTTACCTATTCTTTTCC+AGG - chr6.1:23542141-23542160 MS.gene054349:intron 35.0%
! GTATTGCCACCAATTCTTTT+AGG - chr6.1:23540906-23540925 MS.gene054349:intron 35.0%
! GTTTTCTACGGATGATGTTA+AGG + chr6.1:23543263-23543282 None:intergenic 35.0%
! TGAAGTCAGATTCTTTTCGT+GGG - chr6.1:23543493-23543512 MS.gene054349:intron 35.0%
! TTGAAGTCAGATTCTTTTCG+TGG - chr6.1:23543492-23543511 MS.gene054349:intron 35.0%
!! AAACTCTGGAATTGGTTATG+CGG - chr6.1:23540673-23540692 MS.gene054349:CDS 35.0%
!! AGTCTCATAATGGACTCAAA+GGG + chr6.1:23543392-23543411 None:intergenic 35.0%
!! GGCATGTGACTTTTATTTCT+TGG - chr6.1:23543434-23543453 MS.gene054349:intron 35.0%
!! TAGTCTCATAATGGACTCAA+AGG + chr6.1:23543393-23543412 None:intergenic 35.0%
!! TGACTTTTATTTCTTGGGGA+TGG - chr6.1:23543440-23543459 MS.gene054349:intron 35.0%
!! TTATTCCGAAGTCGACTTTT+GGG + chr6.1:23540014-23540033 None:intergenic 35.0%
!!! CAAACTGCTTTTGGTGTTTA+TGG - chr6.1:23538803-23538822 MS.gene054349:CDS 35.0%
AAGATAGACATTTGCACCAC+TGG + chr6.1:23540805-23540824 None:intergenic 40.0%
AAGCCTTAGGAGACTAATTG+AGG - chr6.1:23542861-23542880 MS.gene054349:intron 40.0%
AAGCTGTTAAACCAAGCCTT+AGG - chr6.1:23542848-23542867 MS.gene054349:intron 40.0%
AAGCTTAGAACAAGCGAAGA+AGG - chr6.1:23543598-23543617 MS.gene054349:intron 40.0%
AATCGAGTTACCACATCAGA+AGG - chr6.1:23541812-23541831 MS.gene054349:CDS 40.0%
ACCTGTAGATCTTTGGTCAA+GGG + chr6.1:23542296-23542315 None:intergenic 40.0%
ACGAAACACTAACACAGACA+CGG - chr6.1:23541462-23541481 MS.gene054349:intron 40.0%
ACGTTATCCTAGAGAGCTTA+TGG + chr6.1:23541050-23541069 None:intergenic 40.0%
ACTACAACCAAAGGAGAAGT+TGG - chr6.1:23543645-23543664 MS.gene054349:CDS 40.0%
AGATGCTTTCTTCCCATGAA+TGG + chr6.1:23543302-23543321 None:intergenic 40.0%
AGCAAAGTTCAACTCAAACC+TGG + chr6.1:23542162-23542181 None:intergenic 40.0%
AGGAGCTTACAAGATCGAAT+TGG - chr6.1:23540436-23540455 MS.gene054349:intron 40.0%
AGTAATATGGCGAAGTAGTG+CGG - chr6.1:23540036-23540055 MS.gene054349:CDS 40.0%
ATAGCTATGAAACACTGGCA+CGG + chr6.1:23542602-23542621 None:intergenic 40.0%
ATCGAGTTACCACATCAGAA+GGG - chr6.1:23541813-23541832 MS.gene054349:CDS 40.0%
ATGACATCGATGATGTCCAA+TGG - chr6.1:23539845-23539864 MS.gene054349:intron 40.0%
ATTGGACATCATCGATGTCA+TGG + chr6.1:23539846-23539865 None:intergenic 40.0%
CAAACAGGCCCTAAAAGAAT+TGG + chr6.1:23540918-23540937 None:intergenic 40.0%
CACACACAGGACTAAATATC+TGG + chr6.1:23540091-23540110 None:intergenic 40.0%
CACAGTTACCTGTAGATCTT+TGG + chr6.1:23542303-23542322 None:intergenic 40.0%
CATTTCGCGAAACACGATTT+AGG + chr6.1:23542065-23542084 None:intergenic 40.0%
CCGAGTTACAAATGTAGGAA+AGG - chr6.1:23542930-23542949 MS.gene054349:intron 40.0%
CCTAGAGAGCTTATGGAAAT+CGG + chr6.1:23541043-23541062 None:intergenic 40.0%
CGTGCTTTCACTCAAAAAGA+AGG + chr6.1:23540314-23540333 None:intergenic 40.0%
CTATGTCGTGGGATACTTTA+GGG + chr6.1:23543368-23543387 None:intergenic 40.0%
CTTGTTTCGAGCATACTGTA+AGG + chr6.1:23542420-23542439 None:intergenic 40.0%
GAGAAGAATTGCATCGTAAC+AGG - chr6.1:23540647-23540666 MS.gene054349:CDS 40.0%
GAGACTGTTTGCAGAACATA+TGG - chr6.1:23540979-23540998 MS.gene054349:intron 40.0%
GATATTTAGTCCTGTGTGTG+AGG - chr6.1:23540091-23540110 MS.gene054349:intron 40.0%
GGAAAGGGTTTAAATTGTGC+AGG - chr6.1:23542946-23542965 MS.gene054349:intron 40.0%
GTATGTCGTAATAAGGAGAG+AGG - chr6.1:23540825-23540844 MS.gene054349:intron 40.0%
GTTACGATGCAATTCTTCTC+TGG + chr6.1:23540647-23540666 None:intergenic 40.0%
TAATCCTTGATTTCGTAGCG+GGG - chr6.1:23543413-23543432 MS.gene054349:intron 40.0%
TAATTTACCAACACGTGCAC+TGG + chr6.1:23541414-23541433 None:intergenic 40.0%
TACCTGTAGATCTTTGGTCA+AGG + chr6.1:23542297-23542316 None:intergenic 40.0%
TAGCCACTATCAGACAAAAC+TGG - chr6.1:23542114-23542133 MS.gene054349:intron 40.0%
TCAAGTATTTAGGCTCCGTT+TGG - chr6.1:23539155-23539174 MS.gene054349:intron 40.0%
TCTATGTCGTGGGATACTTT+AGG + chr6.1:23543369-23543388 None:intergenic 40.0%
TGCATCAAGGTTAACAATGC+TGG - chr6.1:23541776-23541795 MS.gene054349:CDS 40.0%
TTACGCCATGACTGAACTAA+TGG - chr6.1:23542199-23542218 MS.gene054349:intron 40.0%
TTCCTACATTTGTAACTCGG+GGG + chr6.1:23542930-23542949 None:intergenic 40.0%
TTGTGATCTGTCATCTGTCA+CGG - chr6.1:23541347-23541366 MS.gene054349:intron 40.0%
TTGTTAGGCAACCTGCTAAT+TGG - chr6.1:23539634-23539653 MS.gene054349:intron 40.0%
! AACATCTGGAACATGAAGCT+TGG + chr6.1:23539682-23539701 None:intergenic 40.0%
! AATATCTGGAGCATGAGGTT+TGG + chr6.1:23540077-23540096 None:intergenic 40.0%
! AATCGGATTCTAAGGATGCA+TGG - chr6.1:23540119-23540138 MS.gene054349:intron 40.0%
! ACATGGAGACAAACTGCTTT+TGG - chr6.1:23538794-23538813 MS.gene054349:CDS 40.0%
! ATTCCGAGAGCAGCTTTAAT+GGG - chr6.1:23542393-23542412 MS.gene054349:intron 40.0%
! CAACCTCAATTAGTCTCCTA+AGG + chr6.1:23542867-23542886 None:intergenic 40.0%
! CATTGATAGTCTTCGATCCT+TGG - chr6.1:23543759-23543778 MS.gene054349:intron 40.0%
! CGTGTCATTACTGTTTCTTC+TGG - chr6.1:23542254-23542273 MS.gene054349:intron 40.0%
! GAAGTCAGATTCTTTTCGTG+GGG - chr6.1:23543494-23543513 MS.gene054349:intron 40.0%
! GACTAAATATCTGGAGCATG+AGG + chr6.1:23540082-23540101 None:intergenic 40.0%
! GATAGTGGCTATAGCATAGT+GGG + chr6.1:23542105-23542124 None:intergenic 40.0%
! GTCATTACTGTTTCTTCTGG+TGG - chr6.1:23542257-23542276 MS.gene054349:intron 40.0%
! GTGCACTGGAACATTCTTTT+CGG + chr6.1:23541400-23541419 None:intergenic 40.0%
! TATTCCGAGAGCAGCTTTAA+TGG - chr6.1:23542392-23542411 MS.gene054349:intron 40.0%
! TCAATTAGTCTCCTAAGGCT+TGG + chr6.1:23542862-23542881 None:intergenic 40.0%
! TGGTTAGTGATTTTTGCCAG+TGG - chr6.1:23540786-23540805 MS.gene054349:intron 40.0%
!! ACTTACGATTTTGAGAAGCC+TGG + chr6.1:23543231-23543250 None:intergenic 40.0%
!! AGACCAGTTTTGTCTGATAG+TGG + chr6.1:23542120-23542139 None:intergenic 40.0%
!! GTTATTCCGAAGTCGACTTT+TGG + chr6.1:23540015-23540034 None:intergenic 40.0%
!! TGATAGTGGCTATAGCATAG+TGG + chr6.1:23542106-23542125 None:intergenic 40.0%
!! TTGGTAGTTACGGTCTTGTT+TGG + chr6.1:23541199-23541218 None:intergenic 40.0%
AAAGACTCACCCTTCTGATG+TGG + chr6.1:23541825-23541844 None:intergenic 45.0%
ACAGGCCCTAAAAGAATTGG+TGG + chr6.1:23540915-23540934 None:intergenic 45.0%
ACAGTAATGACACGTGCATC+AGG + chr6.1:23542248-23542267 None:intergenic 45.0%
ACATCGATGATGTCCAATGG+TGG - chr6.1:23539848-23539867 MS.gene054349:intron 45.0%
ACTCAAAGGGTCTATGTCGT+GGG + chr6.1:23543379-23543398 None:intergenic 45.0%
AGCAGATCAATGACCACTAC+AGG + chr6.1:23541886-23541905 None:intergenic 45.0%
AGGTGGTGAATCGGATTCTA+AGG - chr6.1:23540111-23540130 MS.gene054349:intron 45.0%
AGTAATGACACGTGCATCAG+GGG + chr6.1:23542246-23542265 None:intergenic 45.0%
ATCGATGATGTCCAATGGTG+GGG - chr6.1:23539850-23539869 MS.gene054349:intron 45.0%
ATCGTAACAGGAGCAAACTC+TGG - chr6.1:23540659-23540678 MS.gene054349:CDS 45.0%
ATGACCACTACAGGTAGAGT+TGG + chr6.1:23541877-23541896 None:intergenic 45.0%
ATTTAGTCCTGTGTGTGAGG+TGG - chr6.1:23540094-23540113 MS.gene054349:intron 45.0%
CAGTAATGACACGTGCATCA+GGG + chr6.1:23542247-23542266 None:intergenic 45.0%
CATCGATGATGTCCAATGGT+GGG - chr6.1:23539849-23539868 MS.gene054349:intron 45.0%
CCAATAGCTAGATTGTGGGA+GGG + chr6.1:23540149-23540168 None:intergenic 45.0%
CCAGATACCAACTTCTCCTT+TGG + chr6.1:23543655-23543674 None:intergenic 45.0%
CCGATTTCCATAAGCTCTCT+AGG - chr6.1:23541040-23541059 MS.gene054349:intron 45.0%
CCTCCCACAATCTAGCTATT+GGG - chr6.1:23540147-23540166 MS.gene054349:intron 45.0%
CGACTCAAAGTGAGTCAGAT+TGG + chr6.1:23542802-23542821 None:intergenic 45.0%
CGGAATACAACCACATGTGT+TGG - chr6.1:23541528-23541547 MS.gene054349:intron 45.0%
CGGTACCATTAGTTCAGTCA+TGG + chr6.1:23542207-23542226 None:intergenic 45.0%
CTCCCACAATCTAGCTATTG+GGG - chr6.1:23540148-23540167 MS.gene054349:intron 45.0%
GACCCCAATAGCTAGATTGT+GGG + chr6.1:23540153-23540172 None:intergenic 45.0%
GCACTACTTCGCCATATTAC+TGG + chr6.1:23540037-23540056 None:intergenic 45.0%
GGGGAAGCTTTCTCAAGTAA+CGG + chr6.1:23542227-23542246 None:intergenic 45.0%
GTAACCATCTGTGTCAGTGT+CGG + chr6.1:23542517-23542536 None:intergenic 45.0%
TAAAGCTGCTCTCGGAATAC+TGG + chr6.1:23542391-23542410 None:intergenic 45.0%
TCCCTTGACCAAAGATCTAC+AGG - chr6.1:23542292-23542311 MS.gene054349:intron 45.0%
TCGATCCTTGGCATCTCTTT+GGG - chr6.1:23543771-23543790 MS.gene054349:intron 45.0%
TCGTAATAAGGAGAGAGGAG+AGG - chr6.1:23540830-23540849 MS.gene054349:intron 45.0%
TGACCACTACAGGTAGAGTT+GGG + chr6.1:23541876-23541895 None:intergenic 45.0%
TGTCACGGATATCAAGTCAC+TGG - chr6.1:23541362-23541381 MS.gene054349:intron 45.0%
TTAAGCCCAAAGAGATGCCA+AGG + chr6.1:23543779-23543798 None:intergenic 45.0%
TTACTCGATGCATCCAGGTT+GGG - chr6.1:23543176-23543195 MS.gene054349:intron 45.0%
TTCCCCCGAGTTACAAATGT+AGG - chr6.1:23542925-23542944 MS.gene054349:intron 45.0%
TTCGATCCTTGGCATCTCTT+TGG - chr6.1:23543770-23543789 MS.gene054349:intron 45.0%
TTGGAGGACGGAACATCTAT+GGG + chr6.1:23539663-23539682 None:intergenic 45.0%
TTTACTCGATGCATCCAGGT+TGG - chr6.1:23543175-23543194 MS.gene054349:intron 45.0%
! ACAACCACATGTGTTGGTGT+CGG - chr6.1:23541534-23541553 MS.gene054349:intron 45.0%
! ATCTGGAACATGAAGCTTGG+AGG + chr6.1:23539679-23539698 None:intergenic 45.0%
! GGATTTTACTCGATGCATCC+AGG - chr6.1:23543171-23543190 MS.gene054349:intron 45.0%
! GGCAAACTTTTTGCAACACC+AGG + chr6.1:23543210-23543229 None:intergenic 45.0%
! GGTGTTGCAAAAAGTTTGCC+AGG - chr6.1:23543210-23543229 MS.gene054349:intron 45.0%
! TCAGATTCTTTTCGTGGGGA+TGG - chr6.1:23543498-23543517 MS.gene054349:intron 45.0%
! TTAGGATTTAGGACTACCCC+TGG + chr6.1:23543539-23543558 None:intergenic 45.0%
!! ACAGGAGCAAACTCTGGAAT+TGG - chr6.1:23540665-23540684 MS.gene054349:CDS 45.0%
!! ATATCAAGTCACTGGCTTCC+AGG - chr6.1:23541370-23541389 MS.gene054349:intron 45.0%
!! CCAAAGGAGAAGTTGGTATC+TGG - chr6.1:23543652-23543671 MS.gene054349:CDS 45.0%
AATATGGCGAAGTAGTGCGG+TGG - chr6.1:23540039-23540058 MS.gene054349:CDS 50.0%
ACGACGTGTAAGTGTCAGCT+TGG + chr6.1:23541491-23541510 None:intergenic 50.0%
ATGAAGTACACCCCCACCAT+TGG + chr6.1:23539864-23539883 None:intergenic 50.0%
ATTGGTTATGCGGCAGCTGA+AGG - chr6.1:23540683-23540702 MS.gene054349:intron 50.0%
CCCAATAGCTAGATTGTGGG+AGG + chr6.1:23540150-23540169 None:intergenic 50.0%
CCCTCCCACAATCTAGCTAT+TGG - chr6.1:23540146-23540165 MS.gene054349:intron 50.0%
CCCTGGTTTCATGGCGATAA+CGG - chr6.1:23540472-23540491 MS.gene054349:intron 50.0%
CCGTTATCGCCATGAAACCA+GGG + chr6.1:23540475-23540494 None:intergenic 50.0%
CGACCCCAATAGCTAGATTG+TGG + chr6.1:23540154-23540173 None:intergenic 50.0%
CTGGTTGGCACTACAACCAA+AGG - chr6.1:23543636-23543655 MS.gene054349:CDS 50.0%
CTGTGTGTGAGGTGGTGAAT+CGG - chr6.1:23540102-23540121 MS.gene054349:intron 50.0%
CTTGGAGGACGGAACATCTA+TGG + chr6.1:23539664-23539683 None:intergenic 50.0%
CTTGGAGTCGTGTATTTGGG+AGG + chr6.1:23543470-23543489 None:intergenic 50.0%
GAATGTTCCAGTGCACGTGT+TGG - chr6.1:23541404-23541423 MS.gene054349:intron 50.0%
GACCACTACAGGTAGAGTTG+GGG + chr6.1:23541875-23541894 None:intergenic 50.0%
GACTCAAAGGGTCTATGTCG+TGG + chr6.1:23543380-23543399 None:intergenic 50.0%
GGAACATGAAGCTTGGAGGA+CGG + chr6.1:23539675-23539694 None:intergenic 50.0%
GGTCCCATTAAAGCTGCTCT+CGG + chr6.1:23542399-23542418 None:intergenic 50.0%
TAGAACAAGCGAAGAAGGCG+CGG - chr6.1:23543603-23543622 MS.gene054349:intron 50.0%
TAGGACTACCCCTGGTAAGT+GGG + chr6.1:23543531-23543550 None:intergenic 50.0%
TCGATGATGTCCAATGGTGG+GGG - chr6.1:23539851-23539870 MS.gene054349:intron 50.0%
TGCTCGAAACAAGCGTGTTC+AGG - chr6.1:23542427-23542446 MS.gene054349:intron 50.0%
TGTCGGACACTAACACGTGT+AGG - chr6.1:23541551-23541570 MS.gene054349:intron 50.0%
TGTGACTGACCCTGGTTTCA+TGG - chr6.1:23540463-23540482 MS.gene054349:intron 50.0%
TTAGGACTACCCCTGGTAAG+TGG + chr6.1:23543532-23543551 None:intergenic 50.0%
TTCCCCAACTCTACCTGTAG+TGG - chr6.1:23541870-23541889 MS.gene054349:intron 50.0%
! GCAAGCCCAAAAGTCGACTT+CGG - chr6.1:23540006-23540025 MS.gene054349:intron 50.0%
!! GAAGTCGACTTTTGGGCTTG+CGG + chr6.1:23540007-23540026 None:intergenic 50.0%
CAGCTGAAGGACTTGCACAG+CGG - chr6.1:23540696-23540715 MS.gene054349:intron 55.0%
CATGCCCCGCTACGAAATCA+AGG + chr6.1:23543420-23543439 None:intergenic 55.0%
CGATTCACCACCTCACACAC+AGG + chr6.1:23540104-23540123 None:intergenic 55.0%
GAGGACGGAACATCTATGGG+CGG + chr6.1:23539660-23539679 None:intergenic 55.0%
GCATCCGACACTGACACAGA+TGG - chr6.1:23542510-23542529 MS.gene054349:intron 55.0%
GCCGTTATCGCCATGAAACC+AGG + chr6.1:23540476-23540495 None:intergenic 55.0%
GGTCTACCTCCCACTTACCA+GGG - chr6.1:23543519-23543538 MS.gene054349:intron 55.0%
GTAACTCGGGGGAATCTTCG+AGG + chr6.1:23542919-23542938 None:intergenic 55.0%
GTCTACCTCCCACTTACCAG+GGG - chr6.1:23543520-23543539 MS.gene054349:intron 55.0%
GTGTCCGACACCAACACATG+TGG + chr6.1:23541541-23541560 None:intergenic 55.0%
TCTATGGGCGGCCAATTAGC+AGG + chr6.1:23539648-23539667 None:intergenic 55.0%
TGGTCTACCTCCCACTTACC+AGG - chr6.1:23543518-23543537 MS.gene054349:intron 55.0%
TTGGTGTGTGTGACTGACCC+TGG - chr6.1:23540455-23540474 MS.gene054349:intron 55.0%
! AGTGTCGGATGCTCGGATAC+TGG + chr6.1:23542502-23542521 None:intergenic 55.0%
! CTGTGTCAGTGTCGGATGCT+CGG + chr6.1:23542509-23542528 None:intergenic 55.0%
AAGGCGCGGACACGGTTATC+TGG - chr6.1:23543617-23543636 MS.gene054349:intron 60.0%
CGCGGACACGGTTATCTGGT+TGG - chr6.1:23543621-23543640 MS.gene054349:intron 60.0%
GACTACCCCTGGTAAGTGGG+AGG + chr6.1:23543528-23543547 None:intergenic 60.0%
! AAGCGAAGAAGGCGCGGACA+CGG - chr6.1:23543609-23543628 MS.gene054349:intron 60.0%
! CCAGGTTGGGCTGACACTCC+TGG - chr6.1:23543189-23543208 MS.gene054349:intron 65.0%
!! CCAGGAGTGTCAGCCCAACC+TGG + chr6.1:23543192-23543211 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 23538679 23543798 23538679 ID=MS.gene054349
chr6.1 mRNA 23538679 23543798 23538679 ID=MS.gene054349.t1;Parent=MS.gene054349
chr6.1 exon 23543784 23543798 23543784 ID=MS.gene054349.t1.exon1;Parent=MS.gene054349.t1
chr6.1 CDS 23543784 23543798 23543784 ID=cds.MS.gene054349.t1;Parent=MS.gene054349.t1
chr6.1 exon 23543622 23543683 23543622 ID=MS.gene054349.t1.exon2;Parent=MS.gene054349.t1
chr6.1 CDS 23543622 23543683 23543622 ID=cds.MS.gene054349.t1;Parent=MS.gene054349.t1
chr6.1 exon 23541760 23541879 23541760 ID=MS.gene054349.t1.exon3;Parent=MS.gene054349.t1
chr6.1 CDS 23541760 23541879 23541760 ID=cds.MS.gene054349.t1;Parent=MS.gene054349.t1
chr6.1 exon 23541572 23541671 23541572 ID=MS.gene054349.t1.exon4;Parent=MS.gene054349.t1
chr6.1 CDS 23541572 23541671 23541572 ID=cds.MS.gene054349.t1;Parent=MS.gene054349.t1
chr6.1 exon 23541052 23541132 23541052 ID=MS.gene054349.t1.exon5;Parent=MS.gene054349.t1
chr6.1 CDS 23541052 23541132 23541052 ID=cds.MS.gene054349.t1;Parent=MS.gene054349.t1
chr6.1 exon 23540643 23540692 23540643 ID=MS.gene054349.t1.exon6;Parent=MS.gene054349.t1
chr6.1 CDS 23540643 23540692 23540643 ID=cds.MS.gene054349.t1;Parent=MS.gene054349.t1
chr6.1 exon 23540164 23540314 23540164 ID=MS.gene054349.t1.exon7;Parent=MS.gene054349.t1
chr6.1 CDS 23540164 23540314 23540164 ID=cds.MS.gene054349.t1;Parent=MS.gene054349.t1
chr6.1 exon 23540029 23540085 23540029 ID=MS.gene054349.t1.exon8;Parent=MS.gene054349.t1
chr6.1 CDS 23540029 23540085 23540029 ID=cds.MS.gene054349.t1;Parent=MS.gene054349.t1
chr6.1 exon 23539233 23539354 23539233 ID=MS.gene054349.t1.exon9;Parent=MS.gene054349.t1
chr6.1 CDS 23539233 23539354 23539233 ID=cds.MS.gene054349.t1;Parent=MS.gene054349.t1
chr6.1 exon 23538679 23538889 23538679 ID=MS.gene054349.t1.exon10;Parent=MS.gene054349.t1
chr6.1 CDS 23538679 23538889 23538679 ID=cds.MS.gene054349.t1;Parent=MS.gene054349.t1
Gene Sequence

>MS.gene054349

ATGTTTCTTATCAAGGTTCTTGTTTTTCTCTCTTCCTTAATTTCACATTTCATTAAACATTATTTGTTTCATGCAAATTGGTTTAATGTTAAATTGTTTGTTTCTATTTGAACAGACATGGAGACAAACTGCTTTTGGTGTTTATGGTTATATGAATTTCACCAAACCTGCTTTTCTGTATGTAATTTCTTCTTTCTTTTTCCATTTTTAATCATTTATTAGTTCCTAAAAGATATATAATGATGATCATATTAACAAATAATTATTGATATTAAGTTCAAAATCATTGAATTTCTTAAGTCAGGTGTAATATGAATTTAGCACATTAATTTATAGGACAAAAATATCAATTTAGGATAATTCAGATGATTATAGGTACAGATGTAATATGAATTTAGCACATTAGTTTAGGTGTAATATGAATTTAGTGATAAAAAAGCGGGTAATTCAGATGATTATAGGTACTAAAAACATAATCAAGTATTTAGGCTCCGTTTGGTTTGAACTTATTTTGAGCTTATGAAAAAGAGCTTATGCAAATAAATAAATTTTTATCTTAATTTATAAGTTCTTACTAACGAAAATCGTACCTTCATAAGTTGTTTTTTCATAAACTACATTAACACGCTTATAAATAATACATAAAGACATATTTATTTGTATAAGTTGTTTTGCTTAAGCTCTAAAATAAGCTAATCCAAACAGGCTAATTTATAGGAACTTTATCATAATTGTAAAATTATGATATTTTGTTATCTTTTCTATTGTTTTGCTGCTTAATTATACTATTCGTAGTCCTAGTATTATGATTATGAAAATAATTATTGTTATTGGAGATCCTATGTTGACTAATGATATGTGATAGGACAAAAATAGTTGCTATAAGTTGGATATAACTCTTATGTTTTGCTTAAACCCAAGTTATAAGATGGTATCAGAGTCTATCGTAGATTTGTTGTTAGGCAACCTGCTAATTGGCCGCCCATAGATGTTCCGTCCTCCAAGCTTCATGTTCCAGATGTTCAATAGTAGGTATGAAGATGTTTATTGGAGATTTCACATTGACTAGTGTTGAGAACAAACTCAGATTATGCAACAAATATATAGAGGATCTTACAATGTTGGTAGATTGAGAAAAGAAAGATTCTGTGTGTGGTTGTGAATCCATGACATCGATGATGTCCAATGGTGGGGGTGTACTTCATTGCACTCCAATGCTCAAGTTAGTATAATGATTGAGATGGATGAAAGGTTTAAAATGAGACCTAACTTGAGTGATGATGATGTGAGACTTTTATAAGTTTGAAGGATGTGGTATTGGGATTCCGCAAGCCCAAAAGTCGACTTCGGAATAACCAGTAATATGGCGAAGTAGTGCGGTGGTAAATCGAATTTCCAAACCTCATGCTCCAGATATTTAGTCCTGTGTGTGAGGTGGTGAATCGGATTCTAAGGATGCATGGACAACCCTCCCACAATCTAGCTATTGGGGTCGAGTTAAGCTGAAATCCAAATTCTAAGAATTATTATGAACTGAGTTATAGTTTTTCCTCAAAGTCTTAATGCTTATCTTAGCACACAACATTGGTCTTGCTTATATATGTAGATGCAAAACAAGTCCAAAATTCGTTTCCTTCTTTTTGAGTGAAAGCACGTTTATTTTGTTAGTTTGATTAGTTTTTCCAGTATTAACATTTACTATGTTGAAACAATCATTTTGAACTAATATTGTCCGTTTCATTTATTTTTGAATGTTGAGGAGCTTACAAGATCGAATTGGTGTGTGTGACTGACCCTGGTTTCATGGCGATAACGGCTACTTATTGTGTTTATAATCTGTACAGTTTATTGAAAAGTAGAATGTAGTAAAGTTGTAGTTTTCTGTCAATAGCTTATGCATAAAATTTTAACTATCACAGTGAGCATTCTAAGAATTTCAAACCAGAGGAAACAGAAACACAAATACCAGAGAAGAATTGCATCGTAACAGGAGCAAACTCTGGAATTGGTTATGCGGCAGCTGAAGGACTTGCACAGCGGTTTTGACCTTTCTTCCGATGTTTGTTTCTGGAATTTTTATTTCAGTATTTAGTTATATGCTAATCTGTGGTTAGTGATTTTTGCCAGTGGTGCAAATGTCTATCTTGTATGTCGTAATAAGGAGAGAGGAGAGGCTGCTCTTTCTCAAATTCAGACTAAAACTGGCAATCAAAATGTGTATTTAGAGGTATTGCCACCAATTCTTTTAGGGCCTGTTTGAATTTACTTACTTTAGCTTATCTGATGACATAATCACTTGTGAGACTGTTTGCAGAACATATGGAAATAACTTGCTATAACATATTCATAAATTGTTTTCAGCCGATTTCCATAAGCTCTCTAGGATAACGTATGAAAACAAATAGCCTACATCAAAACAGTTTGACTTCATTTTATCTTTTGTTATAAAAAGAGGTTACAAAAGCACACTTATAATAATATACATTTATGTTACAAGCAATTAATTAAGCTATTCGTCCAAACAAGACCGTAACTACCAAAAGCATATTAGACTTTTTAAATTTCATGTATTGAAAATAAACTTTATGTTACTATTAACAATTTTGTTAATTTGGAAATAGTAACTGTCATTGTGATTGTTCTTGACTAGCTAATTTTTCTTGCAGATTTGTGATCTGTCATCTGTCACGGATATCAAGTCACTGGCTTCCAGGTTTTCCGAAAAGAATGTTCCAGTGCACGTGTTGGTAAATTATTAATCATATTGCGAGATGATATAATACACGAAACACTAACACAGACACGGACGCCAAGCTGACACTTACACGTCGTCACCAAAAATGAAATAACGGAATACAACCACATGTGTTGGTGTCGGACACTAACACGTGTAGGACAACGAACTAACTGCATGATTGAAATTGCTGATAAACTTAATATAAAAAACTTACGGGACTTTTGTATATTGCTTATGGATACCATTTTATTTGAAGAAAATAAGAACTATAATATATTTTTTGCAATACACAAATTGAACTGCTGATATGATGATTTTAGCCAATTTATTCTCTTGAAAATCTAATATGGAACAATTTATTGCATCAAGGTTAACAATGCTGGCTTGCTTGAGCAAAATCGAGTTACCACATCAGAAGGGTGAGTCTTTTTTGTTAAATGTAGAAATAAATATTTTCCCCAACTCTACCTGTAGTGGTCATTGATCTGCTGCTGTCTTATAATCAGTGTTATCAATTGCATATCACAAAAAATGGTTCAATTTCTTCTATGCTATACCGCCTCTATAGTTTTCTATTTGAAAACACTTAATACCAAATCGTTTTTCGCGAAACAATTACATTTGTTCAAATCCCGCAATAGTTTAGCCTAAATCGTGTTTCGCGAAATGATAACACTTGTTCAAATCCCACTATGCTATAGCCACTATCAGACAAAACTGGTCTTGAGTTTACCTATTCTTTTCCAGGTTTGAGTTGAACTTTGCTGTCAATGTATTAGGCACTTACGCCATGACTGAACTAATGGTACCGTTACTTGAGAAAGCTTCCCCTGATGCACGTGTCATTACTGTTTCTTCTGGTGGAATGTATAGTACTCCCTTGACCAAAGATCTACAGGTAACTGTGTTATGAACATTTCAACTAACTCAATCATTTATAGGATTTCAGTATAATTTATTCTGTTTTCTGTACCAGTATTCCGAGAGCAGCTTTAATGGGACCTTACAGTATGCTCGAAACAAGCGTGTTCAGGTCAGTTATGTTGATCAACTTAGTACTGATATTTTAAATTCAAGGCGTGTCCAGTATCCGAGCATCCGACACTGACACAGATGGTTACAGTCGAATATTCTGTTTTCTCAAATTATGTTGACGTGTCGGTATCAAGTCTGATGTCAATGTCCGTGCCAGTGTTTCATAGCTATTGATGACTGTTAGAATACAGCTTTTTTTCTTCTCTTGTATTGTTGAACAATTAACAAAAAAATCGCATTGTAGTGGTGACAAATATGTTTTTTGTTAGCGATACCATAATGACTAATGTTGTCAACATACACAAAGAAGTGTATATAACCTGTGACTGAATAGTGATACAATATCGACCAATCTGACTCACTTTGAGTCGTGTGAAATTTGCTGAACAACATTGTTAAGCTGTTAAACCAAGCCTTAGGAGACTAATTGAGGTTGTATAGAGATTTGCAAAGACGAAAAAATAGCCTCGAAGATTCCCCCGAGTTACAAATGTAGGAAAGGGTTTAAATTGTGCAGGCTTATCAAATCTTTGCATTCATATATTTGAGAATCCTTATTTCTTGAATAGAGGTTAGGACTTAGGCAACAATTTAAAGAGATAACTGCAGTGATTTCTTTTTTATTTTATTTTGTTTATTTATGCAAATTTTGTGATATATTGGAAATGCCAGGTTGCACTAACAGAAAATTGGGGTGAAACATTCAAGAACAAAGGGATAGGATTTTACTCGATGCATCCAGGTTGGGCTGACACTCCTGGTGTTGCAAAAAGTTTGCCAGGCTTCTCAAAATCGTAAGTAATGCTTGTCCTTAACATCATCCGTAGAAAACCTATTGATTATTAAAACCATTCATGGGAAGAAAGCATCTAATGATCAAGTTGTGTCGACTCTTGCATTGCACTCATTATGTGCCCTAAAGTATCCCACGACATAGACCCTTTGAGTCCATTATGAGACTATAATCCTTGATTTCGTAGCGGGGCATGTGACTTTTATTTCTTGGGGATGGTCTACCTCCCAAATACACGACTCCAAGAATTGAAGTCAGATTCTTTTCGTGGGGATGGTCTACCTCCCACTTACCAGGGGTAGTCCTAAATCCTAATGATTATGTACTGACCTAATTAATTACAGGCTTGCAGGGAAGCTTAGAACAAGCGAAGAAGGCGCGGACACGGTTATCTGGTTGGCACTACAACCAAAGGAGAAGTTGGTATCTGGTGCATTTTATTTTGATAGAGCTGAAGCTCCCAAACACCTTTCATTTAATGCTACAAGTGGTTCTCATACTGTGATCAACTCTGTCATTGATAGTCTTCGATCCTTGGCATCTCTTTGGGCTTAA

Protein sequence

>MS.gene054349.t1

MFLIKTWRQTAFGVYGYMNFTKPAFLEHSKNFKPEETETQIPEKNCIVTGANSGIGYAAAEGLAQRGANVYLVCRNKERGEAALSQIQTKTGNQNVYLEICDLSSVTDIKSLASRFSEKNVPVHVLVNNAGLLEQNRVTTSEGFELNFAVNVLGTYAMTELMVPLLEKASPDARVITVSSGGMYSTPLTKDLQYSESSFNGTLQYARNKRVQVALTENWGETFKNKGIGFYSMHPGWADTPGVAKSLPGFSKSLAGKLRTSEEGADTVIWLALQPKEKLVSGAFYFDRAEAPKHLSFNATSGSHTVINSVIDSLRSLASLWA