AlfalfaGEDB | MS.gene054349

M. sativa cultivar XinJiangDaYe / MS.gene054349

KEGG: K11168
GO: -
PFAM: PF00106.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054349.t1	XP_003619101.2	96.6	322	11	0	1	322	24	345	4.30E-174	620.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054349.t1	A6QP05	44.6	314	168	5	7	318	4	313	7.3e-66	252.3

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054349.t1	G7KIB0	96.6	322	11	0	1	322	24	345	3.1e-174	620.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene054349	0.816228	6.16E-52	-1.69E-46
MS.gene049153	MS.gene054349	0.827053	1.93E-54	-1.69E-46
MS.gene049170	MS.gene054349	0.800797	1.22E-48	-1.69E-46
MS.gene049356	MS.gene054349	0.823728	1.18E-53	-1.69E-46
MS.gene049758	MS.gene054349	0.805072	1.59E-49	-1.69E-46
MS.gene049910	MS.gene054349	0.813679	2.27E-51	-1.69E-46
MS.gene050060	MS.gene054349	0.832713	8.08E-56	-1.69E-46
MS.gene050128	MS.gene054349	0.81547	9.09E-52	-1.69E-46
MS.gene050301	MS.gene054349	0.806718	7.18E-50	-1.69E-46
MS.gene050397	MS.gene054349	0.816828	4.52E-52	-1.69E-46

Showing 1 to 10 of 874 entries

Previous1 2 3 4 5…88Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene006262	MS.gene054349	PPI
MS.gene006263	MS.gene054349	PPI
MS.gene006264	MS.gene054349	PPI
MS.gene006265	MS.gene054349	PPI
MS.gene037994	MS.gene054349	PPI
MS.gene048973	MS.gene054349	PPI
MS.gene058995	MS.gene054349	PPI
MS.gene061154	MS.gene054349	PPI
MS.gene061155	MS.gene054349	PPI
MS.gene061157	MS.gene054349	PPI

Showing 1 to 10 of 24 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054349.t1	MTR_6g041980	96.584	322	11	0	1	322	24	345	0.0	647
MS.gene054349.t1	MTR_6g041980	94.064	219	13	0	1	219	24	242	8.05e-154	432
MS.gene054349.t1	MTR_6g053550	32.296	257	157	7	47	287	41	296	1.49e-30	118
MS.gene054349.t1	MTR_3g077410	29.615	260	166	7	47	291	41	298	8.68e-28	110
MS.gene054349.t1	MTR_4g105310	28.616	318	191	10	1	291	1	309	5.68e-27	108
MS.gene054349.t1	MTR_1g100395	30.224	268	159	8	46	293	32	291	1.58e-26	107
MS.gene054349.t1	MTR_1g100315	28.571	259	163	5	46	287	32	285	3.83e-26	105
MS.gene054349.t1	MTR_8g099995	28.881	277	178	8	29	287	19	294	6.96e-25	102
MS.gene054349.t1	MTR_8g098415	28.295	258	171	6	47	291	33	289	4.01e-24	100
MS.gene054349.t1	MTR_8g098415	28.295	258	171	6	47	291	33	289	4.45e-24	100

Showing 1 to 10 of 32 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054349.t1	AT4G09750	76.875	320	74	0	1	320	1	320	0.0	533
MS.gene054349.t1	AT5G50130	31.298	262	158	8	47	290	40	297	1.24e-29	115
MS.gene054349.t1	AT5G50130	31.034	261	158	8	48	290	8	264	7.43e-29	113
MS.gene054349.t1	AT5G50130	30.916	262	156	9	48	290	8	263	1.01e-27	110
MS.gene054349.t1	AT4G11410	29.921	254	166	5	46	287	32	285	9.78e-27	107
MS.gene054349.t1	AT4G24050	28.859	298	182	10	32	303	17	310	3.22e-26	106
MS.gene054349.t1	AT5G50130	30.088	226	138	6	47	259	40	258	2.00e-25	102
MS.gene054349.t1	AT5G50130	31.081	222	135	6	47	254	40	257	2.62e-25	103
MS.gene054349.t1	AT5G50130	31.169	231	138	7	48	261	8	234	1.04e-24	101
MS.gene054349.t1	AT5G50130	29.956	227	136	7	47	259	40	257	2.84e-24	99.8

Showing 1 to 10 of 40 entries

Previous1 2 3 4Next

Find 74 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCTGGAATTGGTTATG+CGG	0.681764	6.1:-23541782	MS.gene054349:CDS
AAAGACTCACCCTTCTGATG+TGG	0.596679	6.1:+23540633	None:intergenic
AACTTTGCTGTCAATGTATT+AGG	0.347400	6.1:-23540282	MS.gene054349:CDS
AAGCGAAGAAGGCGCGGACA+CGG	0.590204	6.1:-23538846	MS.gene054349:CDS
AAGCTTAGAACAAGCGAAGA+AGG	0.497019	6.1:-23538857	MS.gene054349:CDS
AAGGCGCGGACACGGTTATC+TGG	0.368865	6.1:-23538838	MS.gene054349:CDS
AATCGAGTTACCACATCAGA+AGG	0.554238	6.1:-23540643	MS.gene054349:CDS
ACAGGAGCAAACTCTGGAAT+TGG	0.433631	6.1:-23541790	MS.gene054349:CDS
ACAGTAATGACACGTGCATC+AGG	0.419282	6.1:+23540210	None:intergenic
ACATGGAGACAAACTGCTTT+TGG	0.355048	6.1:-23543661	MS.gene054349:CDS

Showing 1 to 10 of 74 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGAATCTGACTTCAATTCT+TGG	+	chr6.1:23543488-23543507	None:intergenic	30.0%
ACAAAAAAATCGCATTGTAG+TGG	-	chr6.1:23542675-23542694	MS.gene054349:intron	30.0%
AGATAAGCATTAAGACTTTG+AGG	+	chr6.1:23540231-23540250	None:intergenic	30.0%
ATCCAAACAGGCTAATTTAT+AGG	-	chr6.1:23539374-23539393	MS.gene054349:intron	30.0%
CAAATAGAAAACTATAGAGG+CGG	+	chr6.1:23541975-23541994	None:intergenic	30.0%
CAAGGATTATAGTCTCATAA+TGG	+	chr6.1:23543402-23543421	None:intergenic	30.0%
CACATATCATTAGTCAACAT+AGG	+	chr6.1:23539520-23539539	None:intergenic	30.0%
CACTTGTAGCATTAAATGAA+AGG	+	chr6.1:23543714-23543733	None:intergenic	30.0%
CATTATACTAACTTGAGCAT+TGG	+	chr6.1:23539893-23539912	None:intergenic	30.0%
CGTCACCAAAAATGAAATAA+CGG	-	chr6.1:23541508-23541527	MS.gene054349:intron	30.0%

Showing 1 to 10 of 305 entries

Previous1 2 3 4 5…31Next

Chromosome	Type	Strat	End	Strand	Name
chr6.1	gene	23538679	23543798	23538679	ID=MS.gene054349
chr6.1	mRNA	23538679	23543798	23538679	ID=MS.gene054349.t1;Parent=MS.gene054349
chr6.1	exon	23543784	23543798	23543784	ID=MS.gene054349.t1.exon1;Parent=MS.gene054349.t1
chr6.1	CDS	23543784	23543798	23543784	ID=cds.MS.gene054349.t1;Parent=MS.gene054349.t1
chr6.1	exon	23543622	23543683	23543622	ID=MS.gene054349.t1.exon2;Parent=MS.gene054349.t1
chr6.1	CDS	23543622	23543683	23543622	ID=cds.MS.gene054349.t1;Parent=MS.gene054349.t1
chr6.1	exon	23541760	23541879	23541760	ID=MS.gene054349.t1.exon3;Parent=MS.gene054349.t1
chr6.1	CDS	23541760	23541879	23541760	ID=cds.MS.gene054349.t1;Parent=MS.gene054349.t1
chr6.1	exon	23541572	23541671	23541572	ID=MS.gene054349.t1.exon4;Parent=MS.gene054349.t1
chr6.1	CDS	23541572	23541671	23541572	ID=cds.MS.gene054349.t1;Parent=MS.gene054349.t1
chr6.1	exon	23541052	23541132	23541052	ID=MS.gene054349.t1.exon5;Parent=MS.gene054349.t1
chr6.1	CDS	23541052	23541132	23541052	ID=cds.MS.gene054349.t1;Parent=MS.gene054349.t1
chr6.1	exon	23540643	23540692	23540643	ID=MS.gene054349.t1.exon6;Parent=MS.gene054349.t1
chr6.1	CDS	23540643	23540692	23540643	ID=cds.MS.gene054349.t1;Parent=MS.gene054349.t1
chr6.1	exon	23540164	23540314	23540164	ID=MS.gene054349.t1.exon7;Parent=MS.gene054349.t1
chr6.1	CDS	23540164	23540314	23540164	ID=cds.MS.gene054349.t1;Parent=MS.gene054349.t1
chr6.1	exon	23540029	23540085	23540029	ID=MS.gene054349.t1.exon8;Parent=MS.gene054349.t1
chr6.1	CDS	23540029	23540085	23540029	ID=cds.MS.gene054349.t1;Parent=MS.gene054349.t1
chr6.1	exon	23539233	23539354	23539233	ID=MS.gene054349.t1.exon9;Parent=MS.gene054349.t1
chr6.1	CDS	23539233	23539354	23539233	ID=cds.MS.gene054349.t1;Parent=MS.gene054349.t1
chr6.1	exon	23538679	23538889	23538679	ID=MS.gene054349.t1.exon10;Parent=MS.gene054349.t1
chr6.1	CDS	23538679	23538889	23538679	ID=cds.MS.gene054349.t1;Parent=MS.gene054349.t1

Gene Sequence

>MS.gene054349

ATGTTTCTTATCAAGGTTCTTGTTTTTCTCTCTTCCTTAATTTCACATTTCATTAAACATTATTTGTTTCATGCAAATTGGTTTAATGTTAAATTGTTTGTTTCTATTTGAACAGACATGGAGACAAACTGCTTTTGGTGTTTATGGTTATATGAATTTCACCAAACCTGCTTTTCTGTATGTAATTTCTTCTTTCTTTTTCCATTTTTAATCATTTATTAGTTCCTAAAAGATATATAATGATGATCATATTAACAAATAATTATTGATATTAAGTTCAAAATCATTGAATTTCTTAAGTCAGGTGTAATATGAATTTAGCACATTAATTTATAGGACAAAAATATCAATTTAGGATAATTCAGATGATTATAGGTACAGATGTAATATGAATTTAGCACATTAGTTTAGGTGTAATATGAATTTAGTGATAAAAAAGCGGGTAATTCAGATGATTATAGGTACTAAAAACATAATCAAGTATTTAGGCTCCGTTTGGTTTGAACTTATTTTGAGCTTATGAAAAAGAGCTTATGCAAATAAATAAATTTTTATCTTAATTTATAAGTTCTTACTAACGAAAATCGTACCTTCATAAGTTGTTTTTTCATAAACTACATTAACACGCTTATAAATAATACATAAAGACATATTTATTTGTATAAGTTGTTTTGCTTAAGCTCTAAAATAAGCTAATCCAAACAGGCTAATTTATAGGAACTTTATCATAATTGTAAAATTATGATATTTTGTTATCTTTTCTATTGTTTTGCTGCTTAATTATACTATTCGTAGTCCTAGTATTATGATTATGAAAATAATTATTGTTATTGGAGATCCTATGTTGACTAATGATATGTGATAGGACAAAAATAGTTGCTATAAGTTGGATATAACTCTTATGTTTTGCTTAAACCCAAGTTATAAGATGGTATCAGAGTCTATCGTAGATTTGTTGTTAGGCAACCTGCTAATTGGCCGCCCATAGATGTTCCGTCCTCCAAGCTTCATGTTCCAGATGTTCAATAGTAGGTATGAAGATGTTTATTGGAGATTTCACATTGACTAGTGTTGAGAACAAACTCAGATTATGCAACAAATATATAGAGGATCTTACAATGTTGGTAGATTGAGAAAAGAAAGATTCTGTGTGTGGTTGTGAATCCATGACATCGATGATGTCCAATGGTGGGGGTGTACTTCATTGCACTCCAATGCTCAAGTTAGTATAATGATTGAGATGGATGAAAGGTTTAAAATGAGACCTAACTTGAGTGATGATGATGTGAGACTTTTATAAGTTTGAAGGATGTGGTATTGGGATTCCGCAAGCCCAAAAGTCGACTTCGGAATAACCAGTAATATGGCGAAGTAGTGCGGTGGTAAATCGAATTTCCAAACCTCATGCTCCAGATATTTAGTCCTGTGTGTGAGGTGGTGAATCGGATTCTAAGGATGCATGGACAACCCTCCCACAATCTAGCTATTGGGGTCGAGTTAAGCTGAAATCCAAATTCTAAGAATTATTATGAACTGAGTTATAGTTTTTCCTCAAAGTCTTAATGCTTATCTTAGCACACAACATTGGTCTTGCTTATATATGTAGATGCAAAACAAGTCCAAAATTCGTTTCCTTCTTTTTGAGTGAAAGCACGTTTATTTTGTTAGTTTGATTAGTTTTTCCAGTATTAACATTTACTATGTTGAAACAATCATTTTGAACTAATATTGTCCGTTTCATTTATTTTTGAATGTTGAGGAGCTTACAAGATCGAATTGGTGTGTGTGACTGACCCTGGTTTCATGGCGATAACGGCTACTTATTGTGTTTATAATCTGTACAGTTTATTGAAAAGTAGAATGTAGTAAAGTTGTAGTTTTCTGTCAATAGCTTATGCATAAAATTTTAACTATCACAGTGAGCATTCTAAGAATTTCAAACCAGAGGAAACAGAAACACAAATACCAGAGAAGAATTGCATCGTAACAGGAGCAAACTCTGGAATTGGTTATGCGGCAGCTGAAGGACTTGCACAGCGGTTTTGACCTTTCTTCCGATGTTTGTTTCTGGAATTTTTATTTCAGTATTTAGTTATATGCTAATCTGTGGTTAGTGATTTTTGCCAGTGGTGCAAATGTCTATCTTGTATGTCGTAATAAGGAGAGAGGAGAGGCTGCTCTTTCTCAAATTCAGACTAAAACTGGCAATCAAAATGTGTATTTAGAGGTATTGCCACCAATTCTTTTAGGGCCTGTTTGAATTTACTTACTTTAGCTTATCTGATGACATAATCACTTGTGAGACTGTTTGCAGAACATATGGAAATAACTTGCTATAACATATTCATAAATTGTTTTCAGCCGATTTCCATAAGCTCTCTAGGATAACGTATGAAAACAAATAGCCTACATCAAAACAGTTTGACTTCATTTTATCTTTTGTTATAAAAAGAGGTTACAAAAGCACACTTATAATAATATACATTTATGTTACAAGCAATTAATTAAGCTATTCGTCCAAACAAGACCGTAACTACCAAAAGCATATTAGACTTTTTAAATTTCATGTATTGAAAATAAACTTTATGTTACTATTAACAATTTTGTTAATTTGGAAATAGTAACTGTCATTGTGATTGTTCTTGACTAGCTAATTTTTCTTGCAGATTTGTGATCTGTCATCTGTCACGGATATCAAGTCACTGGCTTCCAGGTTTTCCGAAAAGAATGTTCCAGTGCACGTGTTGGTAAATTATTAATCATATTGCGAGATGATATAATACACGAAACACTAACACAGACACGGACGCCAAGCTGACACTTACACGTCGTCACCAAAAATGAAATAACGGAATACAACCACATGTGTTGGTGTCGGACACTAACACGTGTAGGACAACGAACTAACTGCATGATTGAAATTGCTGATAAACTTAATATAAAAAACTTACGGGACTTTTGTATATTGCTTATGGATACCATTTTATTTGAAGAAAATAAGAACTATAATATATTTTTTGCAATACACAAATTGAACTGCTGATATGATGATTTTAGCCAATTTATTCTCTTGAAAATCTAATATGGAACAATTTATTGCATCAAGGTTAACAATGCTGGCTTGCTTGAGCAAAATCGAGTTACCACATCAGAAGGGTGAGTCTTTTTTGTTAAATGTAGAAATAAATATTTTCCCCAACTCTACCTGTAGTGGTCATTGATCTGCTGCTGTCTTATAATCAGTGTTATCAATTGCATATCACAAAAAATGGTTCAATTTCTTCTATGCTATACCGCCTCTATAGTTTTCTATTTGAAAACACTTAATACCAAATCGTTTTTCGCGAAACAATTACATTTGTTCAAATCCCGCAATAGTTTAGCCTAAATCGTGTTTCGCGAAATGATAACACTTGTTCAAATCCCACTATGCTATAGCCACTATCAGACAAAACTGGTCTTGAGTTTACCTATTCTTTTCCAGGTTTGAGTTGAACTTTGCTGTCAATGTATTAGGCACTTACGCCATGACTGAACTAATGGTACCGTTACTTGAGAAAGCTTCCCCTGATGCACGTGTCATTACTGTTTCTTCTGGTGGAATGTATAGTACTCCCTTGACCAAAGATCTACAGGTAACTGTGTTATGAACATTTCAACTAACTCAATCATTTATAGGATTTCAGTATAATTTATTCTGTTTTCTGTACCAGTATTCCGAGAGCAGCTTTAATGGGACCTTACAGTATGCTCGAAACAAGCGTGTTCAGGTCAGTTATGTTGATCAACTTAGTACTGATATTTTAAATTCAAGGCGTGTCCAGTATCCGAGCATCCGACACTGACACAGATGGTTACAGTCGAATATTCTGTTTTCTCAAATTATGTTGACGTGTCGGTATCAAGTCTGATGTCAATGTCCGTGCCAGTGTTTCATAGCTATTGATGACTGTTAGAATACAGCTTTTTTTCTTCTCTTGTATTGTTGAACAATTAACAAAAAAATCGCATTGTAGTGGTGACAAATATGTTTTTTGTTAGCGATACCATAATGACTAATGTTGTCAACATACACAAAGAAGTGTATATAACCTGTGACTGAATAGTGATACAATATCGACCAATCTGACTCACTTTGAGTCGTGTGAAATTTGCTGAACAACATTGTTAAGCTGTTAAACCAAGCCTTAGGAGACTAATTGAGGTTGTATAGAGATTTGCAAAGACGAAAAAATAGCCTCGAAGATTCCCCCGAGTTACAAATGTAGGAAAGGGTTTAAATTGTGCAGGCTTATCAAATCTTTGCATTCATATATTTGAGAATCCTTATTTCTTGAATAGAGGTTAGGACTTAGGCAACAATTTAAAGAGATAACTGCAGTGATTTCTTTTTTATTTTATTTTGTTTATTTATGCAAATTTTGTGATATATTGGAAATGCCAGGTTGCACTAACAGAAAATTGGGGTGAAACATTCAAGAACAAAGGGATAGGATTTTACTCGATGCATCCAGGTTGGGCTGACACTCCTGGTGTTGCAAAAAGTTTGCCAGGCTTCTCAAAATCGTAAGTAATGCTTGTCCTTAACATCATCCGTAGAAAACCTATTGATTATTAAAACCATTCATGGGAAGAAAGCATCTAATGATCAAGTTGTGTCGACTCTTGCATTGCACTCATTATGTGCCCTAAAGTATCCCACGACATAGACCCTTTGAGTCCATTATGAGACTATAATCCTTGATTTCGTAGCGGGGCATGTGACTTTTATTTCTTGGGGATGGTCTACCTCCCAAATACACGACTCCAAGAATTGAAGTCAGATTCTTTTCGTGGGGATGGTCTACCTCCCACTTACCAGGGGTAGTCCTAAATCCTAATGATTATGTACTGACCTAATTAATTACAGGCTTGCAGGGAAGCTTAGAACAAGCGAAGAAGGCGCGGACACGGTTATCTGGTTGGCACTACAACCAAAGGAGAAGTTGGTATCTGGTGCATTTTATTTTGATAGAGCTGAAGCTCCCAAACACCTTTCATTTAATGCTACAAGTGGTTCTCATACTGTGATCAACTCTGTCATTGATAGTCTTCGATCCTTGGCATCTCTTTGGGCTTAA

Protein sequence

>MS.gene054349.t1

MFLIKTWRQTAFGVYGYMNFTKPAFLEHSKNFKPEETETQIPEKNCIVTGANSGIGYAAAEGLAQRGANVYLVCRNKERGEAALSQIQTKTGNQNVYLEICDLSSVTDIKSLASRFSEKNVPVHVLVNNAGLLEQNRVTTSEGFELNFAVNVLGTYAMTELMVPLLEKASPDARVITVSSGGMYSTPLTKDLQYSESSFNGTLQYARNKRVQVALTENWGETFKNKGIGFYSMHPGWADTPGVAKSLPGFSKSLAGKLRTSEEGADTVIWLALQPKEKLVSGAFYFDRAEAPKHLSFNATSGSHTVINSVIDSLRSLASLWA