AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene38979

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38979.t1 MTR_0034s0060 99.401 668 4 0 1 668 131 798 0.0 1386
MS.gene38979.t1 MTR_2g073240 89.671 668 68 1 1 667 13 680 0.0 1268
MS.gene38979.t1 MTR_1g009600 73.835 665 161 3 4 667 2 654 0.0 1036
MS.gene38979.t1 MTR_4g102550 83.509 285 47 0 383 667 11 295 4.79e-178 508
MS.gene38979.t1 MTR_3g452330 51.381 181 36 1 85 265 1 129 2.62e-48 170
MS.gene38979.t1 MTR_3g452330 60.000 100 40 0 375 474 138 237 8.25e-34 130
MS.gene38979.t1 MTR_8g089180 26.000 350 218 13 8 327 72 410 5.04e-25 108
MS.gene38979.t1 MTR_8g089180 26.000 350 218 13 8 327 72 410 5.04e-25 108
MS.gene38979.t1 MTR_4g063600 27.974 311 201 10 9 312 34 328 5.28e-25 107
MS.gene38979.t1 MTR_2g096660 29.618 314 192 10 9 312 40 334 5.34e-25 107
MS.gene38979.t1 MTR_4g120030 26.979 341 216 12 1 332 105 421 8.01e-25 108
MS.gene38979.t1 MTR_4g063600 27.653 311 199 11 9 312 34 325 2.07e-24 105
MS.gene38979.t1 MTR_2g032100 25.788 349 220 12 8 327 72 410 5.21e-24 105
MS.gene38979.t1 MTR_1g088480 27.653 311 196 12 9 312 120 408 3.43e-23 103
MS.gene38979.t1 MTR_4g129820 28.190 337 207 10 8 319 96 422 1.60e-22 101
MS.gene38979.t1 MTR_4g024600 27.545 334 213 8 8 319 102 428 1.80e-21 98.2
MS.gene38979.t1 MTR_5g009170 27.066 351 215 14 7 327 47 386 3.73e-20 93.6
MS.gene38979.t1 MTR_0354s0040 27.405 343 217 9 2 319 74 409 1.45e-19 92.0
MS.gene38979.t1 MTR_8g099535 27.557 352 214 13 7 328 4 344 2.30e-19 90.5
MS.gene38979.t1 MTR_4g102270 26.724 348 208 10 3 319 89 420 6.64e-19 90.1
MS.gene38979.t1 MTR_5g011940 26.136 352 225 10 3 326 86 430 9.10e-19 89.7
MS.gene38979.t1 MTR_3g084090 26.866 335 216 10 9 321 101 428 1.91e-18 89.0
MS.gene38979.t1 MTR_2g032100 28.272 191 124 5 8 193 72 254 1.57e-16 81.3
MS.gene38979.t1 MTR_4g134490 23.429 350 229 13 7 327 25 364 2.14e-16 82.0
MS.gene38979.t1 MTR_4g134490 23.315 356 228 14 7 327 25 370 1.06e-14 76.6
MS.gene38979.t1 MTR_3g105440 30.242 248 142 10 1 234 1 231 2.07e-14 77.0
MS.gene38979.t1 MTR_3g105440 29.388 245 148 9 1 234 1 231 2.07e-14 77.0
MS.gene38979.t1 MTR_7g108490 27.083 192 124 6 141 322 131 316 9.26e-12 67.0
MS.gene38979.t1 MTR_7g108490 27.083 192 124 6 141 322 132 317 9.52e-12 67.0
MS.gene38979.t1 MTR_5g009160 27.473 273 163 12 81 327 17 280 3.11e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38979.t1 AT1G78570 88.209 670 74 2 1 667 1 668 0.0 1243
MS.gene38979.t1 AT3G14790 85.757 667 91 2 1 667 4 666 0.0 1169
MS.gene38979.t1 AT3G14790 85.757 667 91 2 1 667 1 663 0.0 1168
MS.gene38979.t1 AT1G53500 84.535 666 100 2 2 667 4 666 0.0 1160
MS.gene38979.t1 AT1G63000 81.690 284 52 0 384 667 13 296 6.81e-178 508
MS.gene38979.t1 AT4G20460 27.401 354 208 13 8 327 71 409 3.81e-28 117
MS.gene38979.t1 AT2G28760 29.073 313 195 10 9 312 33 327 2.98e-26 110
MS.gene38979.t1 AT2G28760 29.073 313 195 10 9 312 33 327 2.98e-26 110
MS.gene38979.t1 AT2G28760 29.073 313 195 10 9 312 33 327 2.98e-26 110
MS.gene38979.t1 AT2G28760 29.073 313 195 10 9 312 64 358 6.02e-26 110
MS.gene38979.t1 AT5G59290 28.754 313 196 10 9 312 3 297 8.88e-26 108
MS.gene38979.t1 AT5G59290 28.754 313 196 10 9 312 32 326 1.16e-25 109
MS.gene38979.t1 AT5G59290 28.754 313 196 10 9 312 25 319 1.35e-25 108
MS.gene38979.t1 AT3G62830 27.796 313 198 10 9 312 121 414 1.39e-25 110
MS.gene38979.t1 AT3G62830 27.796 313 198 10 9 312 121 414 1.39e-25 110
MS.gene38979.t1 AT5G59290 28.754 313 196 10 9 312 47 341 1.56e-25 108
MS.gene38979.t1 AT3G46440 28.435 313 197 10 9 312 31 325 3.87e-25 107
MS.gene38979.t1 AT3G46440 28.435 313 197 10 9 312 31 325 3.87e-25 107
MS.gene38979.t1 AT3G53520 27.302 315 205 10 9 316 122 419 6.41e-25 108
MS.gene38979.t1 AT2G47650 27.157 313 200 10 9 312 123 416 3.26e-24 106
MS.gene38979.t1 AT5G44480 26.934 349 214 14 8 326 72 409 8.41e-24 105
MS.gene38979.t1 AT5G44480 26.934 349 214 14 8 326 72 409 8.41e-24 105
MS.gene38979.t1 AT5G44480 26.934 349 214 14 8 326 72 409 8.41e-24 105
MS.gene38979.t1 AT5G44480 26.934 349 214 14 8 326 96 433 1.01e-23 105
MS.gene38979.t1 AT1G30620 27.714 350 212 14 8 327 71 409 2.34e-23 103
MS.gene38979.t1 AT1G30620 27.714 350 212 14 8 327 72 410 2.72e-23 103
MS.gene38979.t1 AT1G30620 27.714 350 212 14 8 327 72 410 2.72e-23 103
MS.gene38979.t1 AT1G30620 27.714 350 212 14 8 327 72 410 2.72e-23 103
MS.gene38979.t1 AT1G30620 27.714 350 212 14 8 327 72 410 2.72e-23 103
MS.gene38979.t1 AT2G47650 26.814 317 202 10 9 312 123 422 4.06e-23 103
MS.gene38979.t1 AT3G53520 26.984 315 204 11 9 316 122 417 1.38e-22 101
MS.gene38979.t1 AT3G53520 26.331 338 202 11 9 316 122 442 1.54e-22 101
MS.gene38979.t1 AT2G45310 27.628 333 212 9 9 319 99 424 2.24e-21 97.8
MS.gene38979.t1 AT1G63180 26.611 357 221 13 1 327 1 346 8.88e-21 94.7
MS.gene38979.t1 AT4G00110 27.246 334 214 8 8 319 92 418 1.88e-20 95.1
MS.gene38979.t1 AT1G02000 26.647 334 216 9 8 319 93 419 1.09e-19 92.8
MS.gene38979.t1 AT1G30620 30.366 191 120 5 8 193 72 254 1.36e-18 87.4
MS.gene38979.t1 AT4G30440 30.043 233 153 5 8 234 89 317 3.37e-18 88.2
MS.gene38979.t1 AT3G53520 27.897 233 148 7 8 234 121 339 1.79e-17 85.1
MS.gene38979.t1 AT3G23820 26.048 334 218 9 8 319 113 439 2.53e-16 82.4
MS.gene38979.t1 AT1G64440 27.066 351 213 15 8 327 4 342 4.71e-16 80.5
MS.gene38979.t1 AT4G12250 26.048 334 218 8 8 319 97 423 3.49e-15 79.0
MS.gene38979.t1 AT1G63180 27.365 296 169 12 1 262 1 284 3.62e-15 77.4
MS.gene38979.t1 AT4G23920 25.291 344 222 12 7 323 3 338 1.57e-14 75.9
MS.gene38979.t1 AT1G47290 29.918 244 140 11 5 234 8 234 2.96e-13 72.4
MS.gene38979.t1 AT1G47290 29.918 244 140 11 5 234 8 234 8.36e-13 71.6
MS.gene38979.t1 AT2G26260 26.104 249 149 8 2 234 5 234 1.00e-12 71.6
MS.gene38979.t1 AT1G73250 26.923 182 121 5 151 322 140 319 5.41e-12 68.2

Find 173 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGGAATTCTTTCTTTAATT+TGG 0.120604 8.4:+49002395 None:intergenic
ACACGTGGAAACAATGTTTA+TGG 0.186415 8.4:-49003856 MS.gene38979:CDS
TCTTTGATGGAAAGCAATTC+TGG 0.218557 8.4:+49002375 None:intergenic
ATAGAAAGATCCCATGAAAT+TGG 0.250976 8.4:+49002883 None:intergenic
AAACCAATGCCGGAGCCTTC+TGG 0.251282 8.4:+49002923 None:intergenic
CTGCGGAGTGGCAGTGTTCT+TGG 0.257055 8.4:+49003288 None:intergenic
TCTGTTTATTTCTTCTTGTT+TGG 0.260972 8.4:+49002327 None:intergenic
TTAGAAGCCTGCAAGGTTAC+TGG 0.269609 8.4:-49004063 MS.gene38979:CDS
CTTGATAAGTGATTCTTTGA+TGG 0.279707 8.4:+49002362 None:intergenic
GAAATTCTGCCACTTGAAAC+TGG 0.287832 8.4:+49002479 None:intergenic
TTTGCCATCTCGATTGAAAT+AGG 0.290998 8.4:+49002591 None:intergenic
AGGGTGGATTGGAGGTTTGC+TGG 0.296271 8.4:-49003230 MS.gene38979:CDS
AACTTCTCGGGAAACTGATT+TGG 0.320333 8.4:+49003832 None:intergenic
TTTCCACGTGTTGTGATAAC+AGG 0.321129 8.4:+49003868 None:intergenic
ACTTACCATAGCTTTAGTTT+TGG 0.328658 8.4:+49002859 None:intergenic
GTCAGTACCGATGAGGTCTA+TGG 0.334959 8.4:-49004018 MS.gene38979:CDS
ACAAATTTAATGTTAGCTTC+TGG 0.336048 8.4:+49003589 None:intergenic
GATTCCAAAGTTCATCCTTT+TGG 0.336822 8.4:-49003809 MS.gene38979:CDS
AGTTCCATATATGTTGTTCT+TGG 0.337491 8.4:+49004095 None:intergenic
GTTGGCCATGTTTACAATAT+CGG 0.337863 8.4:-49003676 MS.gene38979:CDS
ATGAGATCCTTGAGATGTAT+AGG 0.343554 8.4:-49002515 MS.gene38979:CDS
TCCAATACTGTCATGCTGTT+TGG 0.344679 8.4:+49002624 None:intergenic
TTCTTGCTGTTTGGTAGGAC+AGG 0.352546 8.4:-49003250 MS.gene38979:CDS
GATCTGGCCAGTAACCTTGC+AGG 0.353065 8.4:+49004056 None:intergenic
TTCACCAAGAACAACATATA+TGG 0.354265 8.4:-49004099 MS.gene38979:CDS
CCAATCAACATTGGGTCTTC+CGG 0.367734 8.4:+49003081 None:intergenic
CCTTTGAAGTTCTTGCTGTT+TGG 0.369703 8.4:-49003259 MS.gene38979:CDS
CGACCCTTTGCATATTCATA+TGG 0.380468 8.4:+49003181 None:intergenic
TGTCAACTACTTGCTTATTA+CGG 0.386916 8.4:-49004193 MS.gene38979:CDS
GGTAGGACAGGGTGGATTGG+AGG 0.391913 8.4:-49003238 MS.gene38979:CDS
AGAGAAACTTGAGTGGAATC+TGG 0.393435 8.4:-49002569 MS.gene38979:CDS
GTGGCAGTGTTCTTGGTTGA+TGG 0.400754 8.4:+49003295 None:intergenic
CTTTGATGGAAAGCAATTCT+GGG 0.407319 8.4:+49002376 None:intergenic
GGAAGACAAGCCCAATTTCA+TGG 0.408529 8.4:-49002894 MS.gene38979:CDS
ACCGAAGAATATCCTCATTA+CGG 0.409644 8.4:-49004391 MS.gene38979:CDS
CCCCTTGACAAACTTAAAGT+TGG 0.415072 8.4:+49004236 None:intergenic
ACCATCCGCGCTAATGTTGC+TGG 0.416077 8.4:-49003037 MS.gene38979:CDS
GGAAAGACTCTTCCCATTCA+TGG 0.417261 8.4:-49003778 MS.gene38979:CDS
ATGACAATGTATGCACCCTT+AGG 0.418171 8.4:-49002731 MS.gene38979:CDS
AGGCTCCGGCATTGGTTTCA+AGG 0.423913 8.4:-49002918 MS.gene38979:CDS
TGTTGCAGAGTACGGGTTTG+TGG 0.424954 8.4:+49003942 None:intergenic
ACTCATGTCGACAACTCATT+TGG 0.427673 8.4:-49004135 MS.gene38979:CDS
CCGAAGAATATCCTCATTAC+GGG 0.434381 8.4:-49004390 MS.gene38979:CDS
TTTGGTAGGACAGGGTGGAT+TGG 0.439952 8.4:-49003241 MS.gene38979:CDS
TTGGCCATGTTTACAATATC+GGG 0.445880 8.4:-49003675 MS.gene38979:CDS
AACTTTGGAATCAACTTCTC+GGG 0.447682 8.4:+49003820 None:intergenic
TGAGATCCTTGAGATGTATA+GGG 0.450832 8.4:-49002514 MS.gene38979:CDS
GAACTTTGGAATCAACTTCT+CGG 0.452334 8.4:+49003819 None:intergenic
TAGAAAGATCCCATGAAATT+GGG 0.452975 8.4:+49002884 None:intergenic
CCCTTGACAAACTTAAAGTT+GGG 0.453571 8.4:+49004237 None:intergenic
TTGCATCTCATGTTGCCAAC+CGG 0.455327 8.4:-49004353 MS.gene38979:CDS
CACGTGGAAACAATGTTTAT+GGG 0.456078 8.4:-49003855 MS.gene38979:CDS
ATTAGAACCATCCCCATGAA+TGG 0.458484 8.4:+49003765 None:intergenic
ACCGATGAAGATGCTATTGT+TGG 0.459550 8.4:-49003991 MS.gene38979:CDS
GAAATGCTTGTCATGGCATA+TGG 0.461925 8.4:-49003907 MS.gene38979:CDS
CATCCAGAAGGCTCCGGCAT+TGG 0.462462 8.4:-49002926 MS.gene38979:CDS
AAGTATCTCTGGTCATTAAA+CGG 0.464062 8.4:+49003556 None:intergenic
TCATTGTGGCTCACAGCACC+AGG 0.470389 8.4:+49002534 None:intergenic
CCGGAAGACCCAATGTTGAT+TGG 0.478270 8.4:-49003081 MS.gene38979:CDS
ATGGCATATGGTAGGTCATA+CGG 0.483908 8.4:-49003895 MS.gene38979:CDS
GGGTGGATTGGAGGTTTGCT+GGG 0.485086 8.4:-49003229 MS.gene38979:CDS
AAATTCTGCCACTTGAAACT+GGG 0.485944 8.4:+49002480 None:intergenic
TGGCAGTGTTCTTGGTTGAT+GGG 0.488497 8.4:+49003296 None:intergenic
CATGAATGAACCTTCTGATC+TGG 0.488900 8.4:+49004040 None:intergenic
GTTGCAGAGTACGGGTTTGT+GGG 0.489248 8.4:+49003943 None:intergenic
TTGCTCAGATCAGATGAAAT+CGG 0.490308 8.4:+49002699 None:intergenic
TGTTGCTGGCACTTTAACAT+TGG 0.496616 8.4:-49003023 MS.gene38979:CDS
CCCGTAATGAGGATATTCTT+CGG 0.496823 8.4:+49004390 None:intergenic
GATCATCGAGAAAGTATCTC+TGG 0.496831 8.4:+49003545 None:intergenic
TTAGATGAATTGACTGATGC+GGG 0.498621 8.4:+49003334 None:intergenic
TTGATGATAAATTATGCTAC+TGG 0.499263 8.4:-49002974 MS.gene38979:CDS
TGAAGTTCTTGCTGTTTGGT+AGG 0.503504 8.4:-49003255 MS.gene38979:CDS
TGGGAGATGATTTCGAAGGA+AGG 0.504770 8.4:+49004256 None:intergenic
GCCAGCAACATTAGCGCGGA+TGG 0.505695 8.4:+49003036 None:intergenic
GAAAAGCCTGCATATATCCT+TGG 0.507143 8.4:+49003621 None:intergenic
TCTTTCCTTGCATAGCCAAA+AGG 0.507278 8.4:+49003794 None:intergenic
GAAAGACTCTTCCCATTCAT+GGG 0.507489 8.4:-49003777 MS.gene38979:CDS
GTTGATGATGCCTGGTGGAA+TGG 0.508097 8.4:-49003389 MS.gene38979:CDS
TGACAATGTATGCACCCTTA+GGG 0.510852 8.4:-49002730 MS.gene38979:CDS
CCCAACTTTAAGTTTGTCAA+GGG 0.511512 8.4:-49004237 MS.gene38979:CDS
TCCAAACAGCATGACAGTAT+TGG 0.513133 8.4:-49002625 MS.gene38979:CDS
GTTTCGCACCAATCAACATT+GGG 0.513420 8.4:+49003073 None:intergenic
CTATTCCAAAACTAAAGCTA+TGG 0.514463 8.4:-49002864 MS.gene38979:intron
TCAGTACCGATGAGGTCTAT+GGG 0.515538 8.4:-49004017 MS.gene38979:CDS
ATAGCCAAAAGGATGAACTT+TGG 0.521511 8.4:+49003805 None:intergenic
GTTCTTCACAAGGGAGAGGT+TGG 0.523496 8.4:-49003694 MS.gene38979:CDS
GAGAGGACCACATGGGATGA+AGG 0.523892 8.4:-49003496 MS.gene38979:CDS
TTTAATGCTGCAGGTGTCAC+CGG 0.525836 8.4:-49003100 MS.gene38979:CDS
TGCTGTTTGGTAGGACAGGG+TGG 0.535213 8.4:-49003246 MS.gene38979:CDS
TGGCATATGGTAGGTCATAC+GGG 0.535706 8.4:-49003894 MS.gene38979:CDS
CCGAGGATGTTGATGATGCC+TGG 0.537047 8.4:-49003397 MS.gene38979:CDS
ATTCCATATGAATATGCAAA+GGG 0.537597 8.4:-49003184 MS.gene38979:CDS
TCCCAACTTTAAGTTTGTCA+AGG 0.538100 8.4:-49004238 MS.gene38979:CDS
ATCATCAACATCCTCGGATG+AGG 0.538319 8.4:+49003403 None:intergenic
CCAAACAGCAAGAACTTCAA+AGG 0.539699 8.4:+49003259 None:intergenic
CCGTACTCTGCAACAAAAGC+AGG 0.539993 8.4:-49003934 MS.gene38979:CDS
GCAGCACATCCAGAAGGCTC+CGG 0.540124 8.4:-49002932 MS.gene38979:CDS
TTCCTCCTTGAAACCAATGC+CGG 0.540843 8.4:+49002913 None:intergenic
TTAGAACCATCCCCATGAAT+GGG 0.541388 8.4:+49003766 None:intergenic
ACTCTTCCCATTCATGGGGA+TGG 0.542729 8.4:-49003772 MS.gene38979:CDS
TCGAGCAGCGACAATTACCT+TGG 0.547636 8.4:+49002440 None:intergenic
TCTTGCTGTTTGGTAGGACA+GGG 0.548224 8.4:-49003249 MS.gene38979:CDS
AGTTTCGCACCAATCAACAT+TGG 0.552063 8.4:+49003072 None:intergenic
TGTAATCCCTATACATCTCA+AGG 0.552164 8.4:+49002508 None:intergenic
CAATTCATCTAATACTCGTA+TGG 0.556213 8.4:-49003323 MS.gene38979:CDS
GACTGAAGAAAACCATAGAA+TGG 0.557484 8.4:-49003474 MS.gene38979:CDS
CGGGATGGCTTCGGACAAGC+CGG 0.558368 8.4:+49004334 None:intergenic
TTGTCCCGATATTGTAAACA+TGG 0.558984 8.4:+49003671 None:intergenic
AAATCGGCATACGAACCCTA+AGG 0.561199 8.4:+49002715 None:intergenic
GAAGACAAGCCCAATTTCAT+GGG 0.561539 8.4:-49002893 MS.gene38979:CDS
AGGTTACTGGCCAGATCAGA+AGG 0.563011 8.4:-49004050 MS.gene38979:CDS
TATCGGGACAAAGAAGGAAA+GGG 0.566922 8.4:-49003659 MS.gene38979:CDS
TTACAATATCGGGACAAAGA+AGG 0.567443 8.4:-49003665 MS.gene38979:CDS
TCTACCTATTTCAATCGAGA+TGG 0.567753 8.4:-49002595 MS.gene38979:CDS
ATCTGGAACTTCACTAACCC+TGG 0.570382 8.4:-49002552 MS.gene38979:CDS
AGTTGTTCTTCACAAGGGAG+AGG 0.570906 8.4:-49003698 MS.gene38979:CDS
CTTCAGTCCTTCATCCCATG+TGG 0.572232 8.4:+49003489 None:intergenic
ATATCGGGACAAAGAAGGAA+AGG 0.579866 8.4:-49003660 MS.gene38979:CDS
TCCAACAATAGCATCTTCAT+CGG 0.581847 8.4:+49003990 None:intergenic
CCAGGCATCATCAACATCCT+CGG 0.585840 8.4:+49003397 None:intergenic
ACGTAGCCAAGGATATATGC+AGG 0.587690 8.4:-49003627 MS.gene38979:CDS
GAAGAAGTTGAGAAGCCTCA+TGG 0.594333 8.4:+49003965 None:intergenic
CAAAGGATGTTTCTGCGGAG+TGG 0.596102 8.4:+49003276 None:intergenic
AACTTCAAAGGATGTTTCTG+CGG 0.601532 8.4:+49003271 None:intergenic
ATTAGATGAATTGACTGATG+CGG 0.603499 8.4:+49003333 None:intergenic
AGGAGCAGAAATGCTTGTCA+TGG 0.604322 8.4:-49003914 MS.gene38979:CDS
CACGCTTGAAGAGCAAGCCA+AGG 0.607735 8.4:-49002457 MS.gene38979:CDS
CAACTTTAAGTTTGTCAAGG+GGG 0.608121 8.4:-49004235 MS.gene38979:CDS
TGCTTGTCATGGCATATGGT+AGG 0.608244 8.4:-49003903 MS.gene38979:CDS
TGCTCGAAGCAACAATGAGA+TGG 0.612444 8.4:-49002424 MS.gene38979:CDS
TGTCTTATTAGAAGCCTGCA+AGG 0.613132 8.4:-49004070 MS.gene38979:CDS
GCTGATGTGTGCAGAGAGCA+CGG 0.615024 8.4:-49003001 MS.gene38979:CDS
ATTTGAAGTTGTTCTTCACA+AGG 0.615527 8.4:-49003704 MS.gene38979:CDS
AAATGTCTCTCCATTCCACC+AGG 0.615800 8.4:+49003379 None:intergenic
AAAACCTCGGTTGGGCTGAG+AGG 0.617287 8.4:-49003513 MS.gene38979:CDS
GGGAGTTATTGACGTAGCCA+AGG 0.619015 8.4:-49003638 MS.gene38979:CDS
GGTGGATTGGAGGTTTGCTG+GGG 0.620082 8.4:-49003228 MS.gene38979:CDS
TACGATGCAGCACATCCAGA+AGG 0.620237 8.4:-49002938 MS.gene38979:CDS
GGGAAATTGTGTGAAAAGCA+AGG 0.621950 8.4:-49003208 MS.gene38979:CDS
GTGCATTGCTTCCTCATCCG+AGG 0.623034 8.4:-49003414 MS.gene38979:CDS
ACATTGACCCCAGTTTCAAG+TGG 0.625778 8.4:-49002488 MS.gene38979:CDS
GTTGGGCTGAGAGGACCACA+TGG 0.627899 8.4:-49003504 MS.gene38979:CDS
ATGGCTTCGGACAAGCCGGT+TGG 0.627965 8.4:+49004338 None:intergenic
TTCATCTAATACTCGTATGG+TGG 0.628057 8.4:-49003320 MS.gene38979:CDS
ATGGCAAAGAGAAACTTGAG+TGG 0.635436 8.4:-49002576 MS.gene38979:CDS
ATCTTTGTGATGAAGTTGCG+TGG 0.638823 8.4:+49002675 None:intergenic
AATCGGCATACGAACCCTAA+GGG 0.640550 8.4:+49002716 None:intergenic
CGAAGAATATCCTCATTACG+GGG 0.642246 8.4:-49004389 MS.gene38979:CDS
CCAACTTTAAGTTTGTCAAG+GGG 0.643202 8.4:-49004236 MS.gene38979:CDS
TTTGAAGTTGTTCTTCACAA+GGG 0.643778 8.4:-49003703 MS.gene38979:CDS
ATGGGGATGGTTCTAATGTG+AGG 0.645313 8.4:-49003759 MS.gene38979:CDS
CGAAGCAACAATGAGATGGA+TGG 0.645825 8.4:-49002420 MS.gene38979:CDS
AATTCCATATGAATATGCAA+AGG 0.647655 8.4:-49003185 MS.gene38979:CDS
TTACCTGTTATCACAACACG+TGG 0.649186 8.4:-49003871 MS.gene38979:CDS
TGGTCCTCTCAGCCCAACCG+AGG 0.649775 8.4:+49003509 None:intergenic
CTGATGTGTGCAGAGAGCAC+GGG 0.653789 8.4:-49003000 MS.gene38979:CDS
ATCGGGACAAAGAAGGAAAG+GGG 0.655672 8.4:-49003658 MS.gene38979:CDS
TCTTTGTGATGAAGTTGCGT+GGG 0.656677 8.4:+49002676 None:intergenic
AATTCTGCCACTTGAAACTG+GGG 0.659291 8.4:+49002481 None:intergenic
GGTCTCCCCATAGACCTCAT+CGG 0.659778 8.4:+49004011 None:intergenic
TGCTATTGTTGGAAACCATG+AGG 0.663909 8.4:-49003980 MS.gene38979:CDS
ACATCTCAAGGATCTCATTG+TGG 0.665387 8.4:+49002520 None:intergenic
AAAGACTCTTCCCATTCATG+GGG 0.676326 8.4:-49003776 MS.gene38979:CDS
GTATTGTGAAGATGTTGCTG+AGG 0.681547 8.4:-49003728 MS.gene38979:CDS
CATTCATGTCAGTACCGATG+AGG 0.691762 8.4:-49004025 MS.gene38979:CDS
CAGTACCGATGAGGTCTATG+GGG 0.693201 8.4:-49004016 MS.gene38979:CDS
AAGTTGGGAGATGATTTCGA+AGG 0.693891 8.4:+49004252 None:intergenic
CTCCGGCATTGGTTTCAAGG+AGG 0.696239 8.4:-49002915 MS.gene38979:CDS
AAGTGCCAGCAACATTAGCG+CGG 0.700659 8.4:+49003032 None:intergenic
CATTGTGGCTCACAGCACCA+GGG 0.711227 8.4:+49002535 None:intergenic
TTGGGCTGAGAGGACCACAT+GGG 0.711320 8.4:-49003503 MS.gene38979:CDS
AGGATGTTGATGATGCCTGG+TGG 0.713184 8.4:-49003394 MS.gene38979:CDS
GAAGAATATCCTCATTACGG+GGG 0.731502 8.4:-49004388 MS.gene38979:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAGATCGTTCTATTTA+AGG + chr8.4:49003906-49003925 None:intergenic 20.0%
!! GAAAAAAATTCATAATGCAA+AGG + chr8.4:49003933-49003952 None:intergenic 20.0%
! AATTCCATATGAATATGCAA+AGG - chr8.4:49003552-49003571 MS.gene38979:CDS 25.0%
! ATTCCATATGAATATGCAAA+GGG - chr8.4:49003553-49003572 MS.gene38979:CDS 25.0%
! TGGGAATTCTTTCTTTAATT+TGG + chr8.4:49004345-49004364 None:intergenic 25.0%
!! ACAAATTTAATGTTAGCTTC+TGG + chr8.4:49003151-49003170 None:intergenic 25.0%
!! TTGATGATAAATTATGCTAC+TGG - chr8.4:49003763-49003782 MS.gene38979:CDS 25.0%
!!! ATTTTTGGTATACCATTCTA+TGG + chr8.4:49003278-49003297 None:intergenic 25.0%
!!! CTCTTAATTGAATTTTGATC+AGG - chr8.4:49003962-49003981 MS.gene38979:CDS 25.0%
AAGTATCTCTGGTCATTAAA+CGG + chr8.4:49003184-49003203 None:intergenic 30.0%
AGTTCCATATATGTTGTTCT+TGG + chr8.4:49002645-49002664 None:intergenic 30.0%
ATAGAAAGATCCCATGAAAT+TGG + chr8.4:49003857-49003876 None:intergenic 30.0%
ATTAGATGAATTGACTGATG+CGG + chr8.4:49003407-49003426 None:intergenic 30.0%
CAATTCATCTAATACTCGTA+TGG - chr8.4:49003414-49003433 MS.gene38979:CDS 30.0%
CTATTCCAAAACTAAAGCTA+TGG - chr8.4:49003873-49003892 MS.gene38979:CDS 30.0%
CTTGATAAGTGATTCTTTGA+TGG + chr8.4:49004378-49004397 None:intergenic 30.0%
TAGAAAGATCCCATGAAATT+GGG + chr8.4:49003856-49003875 None:intergenic 30.0%
TGTCAACTACTTGCTTATTA+CGG - chr8.4:49002544-49002563 MS.gene38979:CDS 30.0%
TTCACCAAGAACAACATATA+TGG - chr8.4:49002638-49002657 MS.gene38979:CDS 30.0%
! AAGCACAACAATTTTGTACT+CGG + chr8.4:49002426-49002445 None:intergenic 30.0%
! ATTTGAAGTTGTTCTTCACA+AGG - chr8.4:49003033-49003052 MS.gene38979:CDS 30.0%
! TTTGAAGTTGTTCTTCACAA+GGG - chr8.4:49003034-49003053 MS.gene38979:CDS 30.0%
!! ATTGAATTTTGATCAGGTTG+AGG - chr8.4:49003968-49003987 MS.gene38979:CDS 30.0%
!!! ACTTACCATAGCTTTAGTTT+TGG + chr8.4:49003881-49003900 None:intergenic 30.0%
ACACGTGGAAACAATGTTTA+TGG - chr8.4:49002881-49002900 MS.gene38979:CDS 35.0%
ACCGAAGAATATCCTCATTA+CGG - chr8.4:49002346-49002365 MS.gene38979:CDS 35.0%
ACCTGCAGCATTAAAAACAT+GGG + chr8.4:49003632-49003651 None:intergenic 35.0%
ATACCAAAAATCCTGATTGG+TGG - chr8.4:49003287-49003306 MS.gene38979:CDS 35.0%
ATAGCCAAAAGGATGAACTT+TGG + chr8.4:49002935-49002954 None:intergenic 35.0%
ATGAGATCCTTGAGATGTAT+AGG - chr8.4:49004222-49004241 MS.gene38979:CDS 35.0%
CACGTGGAAACAATGTTTAT+GGG - chr8.4:49002882-49002901 MS.gene38979:CDS 35.0%
CCCTTGACAAACTTAAAGTT+GGG + chr8.4:49002503-49002522 None:intergenic 35.0%
CTTTGATGGAAAGCAATTCT+GGG + chr8.4:49004364-49004383 None:intergenic 35.0%
GACTGAAGAAAACCATAGAA+TGG - chr8.4:49003263-49003282 MS.gene38979:CDS 35.0%
GGTATACCAAAAATCCTGAT+TGG - chr8.4:49003284-49003303 MS.gene38979:CDS 35.0%
GTTGGCCATGTTTACAATAT+CGG - chr8.4:49003061-49003080 MS.gene38979:CDS 35.0%
TACCAAAAATCCTGATTGGT+GGG - chr8.4:49003288-49003307 MS.gene38979:CDS 35.0%
TCCAACAATAGCATCTTCAT+CGG + chr8.4:49002750-49002769 None:intergenic 35.0%
TCTACCTATTTCAATCGAGA+TGG - chr8.4:49004142-49004161 MS.gene38979:CDS 35.0%
TCTTTGATGGAAAGCAATTC+TGG + chr8.4:49004365-49004384 None:intergenic 35.0%
TGAGATCCTTGAGATGTATA+GGG - chr8.4:49004223-49004242 MS.gene38979:CDS 35.0%
TGTAATCCCTATACATCTCA+AGG + chr8.4:49004232-49004251 None:intergenic 35.0%
TTACAATATCGGGACAAAGA+AGG - chr8.4:49003072-49003091 MS.gene38979:CDS 35.0%
TTAGATGAATTGACTGATGC+GGG + chr8.4:49003406-49003425 None:intergenic 35.0%
TTCATCTAATACTCGTATGG+TGG - chr8.4:49003417-49003436 MS.gene38979:CDS 35.0%
TTGCTCAGATCAGATGAAAT+CGG + chr8.4:49004041-49004060 None:intergenic 35.0%
TTGGCCATGTTTACAATATC+GGG - chr8.4:49003062-49003081 MS.gene38979:CDS 35.0%
TTGTCCCGATATTGTAAACA+TGG + chr8.4:49003069-49003088 None:intergenic 35.0%
TTTGCCATCTCGATTGAAAT+AGG + chr8.4:49004149-49004168 None:intergenic 35.0%
! AAATTCTGCCACTTGAAACT+GGG + chr8.4:49004260-49004279 None:intergenic 35.0%
! AACTTCAAAGGATGTTTCTG+CGG + chr8.4:49003469-49003488 None:intergenic 35.0%
! AGCACAACAATTTTGTACTC+GGG + chr8.4:49002425-49002444 None:intergenic 35.0%
! CAACTTTAAGTTTGTCAAGG+GGG - chr8.4:49002502-49002521 MS.gene38979:CDS 35.0%
! CCAACTTTAAGTTTGTCAAG+GGG - chr8.4:49002501-49002520 MS.gene38979:CDS 35.0%
! CCCAACTTTAAGTTTGTCAA+GGG - chr8.4:49002500-49002519 MS.gene38979:CDS 35.0%
! GATTCCAAAGTTCATCCTTT+TGG - chr8.4:49002928-49002947 MS.gene38979:CDS 35.0%
! TCCCAACTTTAAGTTTGTCA+AGG - chr8.4:49002499-49002518 MS.gene38979:CDS 35.0%
!! AACTTTGGAATCAACTTCTC+GGG + chr8.4:49002920-49002939 None:intergenic 35.0%
!! GAACTTTGGAATCAACTTCT+CGG + chr8.4:49002921-49002940 None:intergenic 35.0%
AAAGACTCTTCCCATTCATG+GGG - chr8.4:49002961-49002980 MS.gene38979:CDS 40.0%
AACTTCTCGGGAAACTGATT+TGG + chr8.4:49002908-49002927 None:intergenic 40.0%
AAGTTGGGAGATGATTTCGA+AGG + chr8.4:49002488-49002507 None:intergenic 40.0%
AAGTTTGTCAAGGGGGATAT+CGG - chr8.4:49002509-49002528 MS.gene38979:CDS 40.0%
ACATCTCAAGGATCTCATTG+TGG + chr8.4:49004220-49004239 None:intergenic 40.0%
ACCAAAAATCCTGATTGGTG+GGG - chr8.4:49003289-49003308 MS.gene38979:CDS 40.0%
ACCGATGAAGATGCTATTGT+TGG - chr8.4:49002746-49002765 MS.gene38979:CDS 40.0%
ACTCATGTCGACAACTCATT+TGG - chr8.4:49002602-49002621 MS.gene38979:CDS 40.0%
AGAGAAACTTGAGTGGAATC+TGG - chr8.4:49004168-49004187 MS.gene38979:CDS 40.0%
AGTTTCGCACCAATCAACAT+TGG + chr8.4:49003668-49003687 None:intergenic 40.0%
ATATCGGGACAAAGAAGGAA+AGG - chr8.4:49003077-49003096 MS.gene38979:CDS 40.0%
ATCTTTGTGATGAAGTTGCG+TGG + chr8.4:49004065-49004084 None:intergenic 40.0%
ATGACAATGTATGCACCCTT+AGG - chr8.4:49004006-49004025 MS.gene38979:CDS 40.0%
ATGGCAAAGAGAAACTTGAG+TGG - chr8.4:49004161-49004180 MS.gene38979:CDS 40.0%
ATGGCATATGGTAGGTCATA+CGG - chr8.4:49002842-49002861 MS.gene38979:intron 40.0%
ATTAGAACCATCCCCATGAA+TGG + chr8.4:49002975-49002994 None:intergenic 40.0%
CACCTGCAGCATTAAAAACA+TGG + chr8.4:49003633-49003652 None:intergenic 40.0%
CATGAATGAACCTTCTGATC+TGG + chr8.4:49002700-49002719 None:intergenic 40.0%
CCAAACAGCAAGAACTTCAA+AGG + chr8.4:49003481-49003500 None:intergenic 40.0%
CCCCTTGACAAACTTAAAGT+TGG + chr8.4:49002504-49002523 None:intergenic 40.0%
CCCGTAATGAGGATATTCTT+CGG + chr8.4:49002350-49002369 None:intergenic 40.0%
CCGAAGAATATCCTCATTAC+GGG - chr8.4:49002347-49002366 MS.gene38979:CDS 40.0%
CGAAGAATATCCTCATTACG+GGG - chr8.4:49002348-49002367 MS.gene38979:CDS 40.0%
CGACCCTTTGCATATTCATA+TGG + chr8.4:49003559-49003578 None:intergenic 40.0%
GAAAAGCCTGCATATATCCT+TGG + chr8.4:49003119-49003138 None:intergenic 40.0%
GAAAGACTCTTCCCATTCAT+GGG - chr8.4:49002960-49002979 MS.gene38979:CDS 40.0%
GAAATGCTTGTCATGGCATA+TGG - chr8.4:49002830-49002849 MS.gene38979:intron 40.0%
GAAGAATATCCTCATTACGG+GGG - chr8.4:49002349-49002368 MS.gene38979:CDS 40.0%
GAAGACAAGCCCAATTTCAT+GGG - chr8.4:49003844-49003863 MS.gene38979:CDS 40.0%
GATCAGAAGCTGAAAAACCT+CGG - chr8.4:49003211-49003230 MS.gene38979:CDS 40.0%
GCAGCATTAAAAACATGGGT+TGG + chr8.4:49003628-49003647 None:intergenic 40.0%
GGGAAATTGTGTGAAAAGCA+AGG - chr8.4:49003529-49003548 MS.gene38979:CDS 40.0%
GTATTGTGAAGATGTTGCTG+AGG - chr8.4:49003009-49003028 MS.gene38979:CDS 40.0%
GTTTCGCACCAATCAACATT+GGG + chr8.4:49003667-49003686 None:intergenic 40.0%
TATCGGGACAAAGAAGGAAA+GGG - chr8.4:49003078-49003097 MS.gene38979:CDS 40.0%
TCCAAACAGCATGACAGTAT+TGG - chr8.4:49004112-49004131 MS.gene38979:CDS 40.0%
TCCAATACTGTCATGCTGTT+TGG + chr8.4:49004116-49004135 None:intergenic 40.0%
TCTTTCCTTGCATAGCCAAA+AGG + chr8.4:49002946-49002965 None:intergenic 40.0%
TCTTTGTGATGAAGTTGCGT+GGG + chr8.4:49004064-49004083 None:intergenic 40.0%
TGACAATGTATGCACCCTTA+GGG - chr8.4:49004007-49004026 MS.gene38979:CDS 40.0%
TGCTATTGTTGGAAACCATG+AGG - chr8.4:49002757-49002776 MS.gene38979:intron 40.0%
TGTTGCTGGCACTTTAACAT+TGG - chr8.4:49003714-49003733 MS.gene38979:CDS 40.0%
TTACCTGTTATCACAACACG+TGG - chr8.4:49002866-49002885 MS.gene38979:CDS 40.0%
TTAGAACCATCCCCATGAAT+GGG + chr8.4:49002974-49002993 None:intergenic 40.0%
TTTCCACGTGTTGTGATAAC+AGG + chr8.4:49002872-49002891 None:intergenic 40.0%
! AATTCTGCCACTTGAAACTG+GGG + chr8.4:49004259-49004278 None:intergenic 40.0%
! CAACAATTTTGTACTCGGGA+TGG + chr8.4:49002421-49002440 None:intergenic 40.0%
! GAAATTCTGCCACTTGAAAC+TGG + chr8.4:49004261-49004280 None:intergenic 40.0%
! GGAATGGAGAGACATTTTGA+AGG - chr8.4:49003364-49003383 MS.gene38979:CDS 40.0%
! TATATGCAGGCTTTTCTCGA+TGG - chr8.4:49003123-49003142 MS.gene38979:CDS 40.0%
! TGTCTTATTAGAAGCCTGCA+AGG - chr8.4:49002667-49002686 MS.gene38979:CDS 40.0%
!! ACCCATGTTTTTAATGCTGC+AGG - chr8.4:49003628-49003647 MS.gene38979:CDS 40.0%
!! AGACATTTTGAAGGATCCGA+AGG - chr8.4:49003373-49003392 MS.gene38979:CDS 40.0%
!! CCTTTGAAGTTCTTGCTGTT+TGG - chr8.4:49003478-49003497 MS.gene38979:CDS 40.0%
!! GATCATCGAGAAAGTATCTC+TGG + chr8.4:49003195-49003214 None:intergenic 40.0%
!! TGAAGTTCTTGCTGTTTGGT+AGG - chr8.4:49003482-49003501 MS.gene38979:CDS 40.0%
!! TTCATCCTTTTGGCTATGCA+AGG - chr8.4:49002938-49002957 MS.gene38979:CDS 40.0%
AAATCGGCATACGAACCCTA+AGG + chr8.4:49004025-49004044 None:intergenic 45.0%
AAATGTCTCTCCATTCCACC+AGG + chr8.4:49003361-49003380 None:intergenic 45.0%
AATCGGCATACGAACCCTAA+GGG + chr8.4:49004024-49004043 None:intergenic 45.0%
ACATTGACCCCAGTTTCAAG+TGG - chr8.4:49004249-49004268 MS.gene38979:CDS 45.0%
ACGTAGCCAAGGATATATGC+AGG - chr8.4:49003110-49003129 MS.gene38979:CDS 45.0%
AGAAGCTGAAAAACCTCGGT+TGG - chr8.4:49003215-49003234 MS.gene38979:CDS 45.0%
AGGAGCAGAAATGCTTGTCA+TGG - chr8.4:49002823-49002842 MS.gene38979:intron 45.0%
AGTTGTTCTTCACAAGGGAG+AGG - chr8.4:49003039-49003058 MS.gene38979:CDS 45.0%
ATCATCAACATCCTCGGATG+AGG + chr8.4:49003337-49003356 None:intergenic 45.0%
ATCGGGACAAAGAAGGAAAG+GGG - chr8.4:49003079-49003098 MS.gene38979:CDS 45.0%
CAAAAATCCTGATTGGTGGG+GGG - chr8.4:49003291-49003310 MS.gene38979:CDS 45.0%
CCAAAAATCCTGATTGGTGG+GGG - chr8.4:49003290-49003309 MS.gene38979:CDS 45.0%
CCAATCAACATTGGGTCTTC+CGG + chr8.4:49003659-49003678 None:intergenic 45.0%
CGAAGCAACAATGAGATGGA+TGG - chr8.4:49004317-49004336 MS.gene38979:CDS 45.0%
GAAGAAGTTGAGAAGCCTCA+TGG + chr8.4:49002775-49002794 None:intergenic 45.0%
GAAGCTGAAAAACCTCGGTT+GGG - chr8.4:49003216-49003235 MS.gene38979:CDS 45.0%
GGAAAGACTCTTCCCATTCA+TGG - chr8.4:49002959-49002978 MS.gene38979:CDS 45.0%
GGAAGACAAGCCCAATTTCA+TGG - chr8.4:49003843-49003862 MS.gene38979:CDS 45.0%
TGCTCGAAGCAACAATGAGA+TGG - chr8.4:49004313-49004332 MS.gene38979:CDS 45.0%
TGCTTGTCATGGCATATGGT+AGG - chr8.4:49002834-49002853 MS.gene38979:intron 45.0%
TGGCAGTGTTCTTGGTTGAT+GGG + chr8.4:49003444-49003463 None:intergenic 45.0%
TGGCATATGGTAGGTCATAC+GGG - chr8.4:49002843-49002862 MS.gene38979:intron 45.0%
TGGGAGATGATTTCGAAGGA+AGG + chr8.4:49002484-49002503 None:intergenic 45.0%
TTAGAAGCCTGCAAGGTTAC+TGG - chr8.4:49002674-49002693 MS.gene38979:CDS 45.0%
TTCCTCCTTGAAACCAATGC+CGG + chr8.4:49003827-49003846 None:intergenic 45.0%
TTGCATCTCATGTTGCCAAC+CGG - chr8.4:49002384-49002403 MS.gene38979:CDS 45.0%
! ATCTGGAACTTCACTAACCC+TGG - chr8.4:49004185-49004204 MS.gene38979:CDS 45.0%
! TTTAATGCTGCAGGTGTCAC+CGG - chr8.4:49003637-49003656 MS.gene38979:CDS 45.0%
! TTTTGTACTCGGGATGGCTT+CGG + chr8.4:49002415-49002434 None:intergenic 45.0%
!! ATGGGGATGGTTCTAATGTG+AGG - chr8.4:49002978-49002997 MS.gene38979:CDS 45.0%
!! CATTCATGTCAGTACCGATG+AGG - chr8.4:49002712-49002731 MS.gene38979:CDS 45.0%
!! CCTGCTTTTGTTGCAGAGTA+CGG + chr8.4:49002806-49002825 None:intergenic 45.0%
!! CTGCTTTTGTTGCAGAGTAC+GGG + chr8.4:49002805-49002824 None:intergenic 45.0%
!! TCAGTACCGATGAGGTCTAT+GGG - chr8.4:49002720-49002739 MS.gene38979:CDS 45.0%
!! TCTTGCTGTTTGGTAGGACA+GGG - chr8.4:49003488-49003507 MS.gene38979:CDS 45.0%
!! TTCTTGCTGTTTGGTAGGAC+AGG - chr8.4:49003487-49003506 MS.gene38979:CDS 45.0%
AAGTGCCAGCAACATTAGCG+CGG + chr8.4:49003708-49003727 None:intergenic 50.0%
ACTCTTCCCATTCATGGGGA+TGG - chr8.4:49002965-49002984 MS.gene38979:CDS 50.0%
AGGTTACTGGCCAGATCAGA+AGG - chr8.4:49002687-49002706 MS.gene38979:CDS 50.0%
CCAGGCATCATCAACATCCT+CGG + chr8.4:49003343-49003362 None:intergenic 50.0%
CCGGAAGACCCAATGTTGAT+TGG - chr8.4:49003656-49003675 MS.gene38979:CDS 50.0%
CCGTACTCTGCAACAAAAGC+AGG - chr8.4:49002803-49002822 MS.gene38979:intron 50.0%
CTTCAGTCCTTCATCCCATG+TGG + chr8.4:49003251-49003270 None:intergenic 50.0%
GGGAGTTATTGACGTAGCCA+AGG - chr8.4:49003099-49003118 MS.gene38979:CDS 50.0%
GTGGCAGTGTTCTTGGTTGA+TGG + chr8.4:49003445-49003464 None:intergenic 50.0%
GTTCTTCACAAGGGAGAGGT+TGG - chr8.4:49003043-49003062 MS.gene38979:CDS 50.0%
GTTGCAGAGTACGGGTTTGT+GGG + chr8.4:49002797-49002816 None:intergenic 50.0%
TACGATGCAGCACATCCAGA+AGG - chr8.4:49003799-49003818 MS.gene38979:CDS 50.0%
TCGAGCAGCGACAATTACCT+TGG + chr8.4:49004300-49004319 None:intergenic 50.0%
TGTTGCAGAGTACGGGTTTG+TGG + chr8.4:49002798-49002817 None:intergenic 50.0%
TTTGGTAGGACAGGGTGGAT+TGG - chr8.4:49003496-49003515 MS.gene38979:CDS 50.0%
! CAAAGGATGTTTCTGCGGAG+TGG + chr8.4:49003464-49003483 None:intergenic 50.0%
! CCCCCACCAATCAGGATTTT+TGG + chr8.4:49003293-49003312 None:intergenic 50.0%
! TGATGCGGGATTTTCGCCTT+CGG + chr8.4:49003392-49003411 None:intergenic 50.0%
!! AGGATGTTGATGATGCCTGG+TGG - chr8.4:49003343-49003362 MS.gene38979:CDS 50.0%
!! CAGTACCGATGAGGTCTATG+GGG - chr8.4:49002721-49002740 MS.gene38979:CDS 50.0%
!! GTCAGTACCGATGAGGTCTA+TGG - chr8.4:49002719-49002738 MS.gene38979:CDS 50.0%
!! GTTGATGATGCCTGGTGGAA+TGG - chr8.4:49003348-49003367 MS.gene38979:CDS 50.0%
AAAACCTCGGTTGGGCTGAG+AGG - chr8.4:49003224-49003243 MS.gene38979:CDS 55.0%
AAACCAATGCCGGAGCCTTC+TGG + chr8.4:49003817-49003836 None:intergenic 55.0%
ACCATCCGCGCTAATGTTGC+TGG - chr8.4:49003700-49003719 MS.gene38979:CDS 55.0%
CACGCTTGAAGAGCAAGCCA+AGG - chr8.4:49004280-49004299 MS.gene38979:CDS 55.0%
CATTGTGGCTCACAGCACCA+GGG + chr8.4:49004205-49004224 None:intergenic 55.0%
GAGAGGACCACATGGGATGA+AGG - chr8.4:49003241-49003260 MS.gene38979:CDS 55.0%
GATCTGGCCAGTAACCTTGC+AGG + chr8.4:49002684-49002703 None:intergenic 55.0%
GCTGATGTGTGCAGAGAGCA+CGG - chr8.4:49003736-49003755 MS.gene38979:CDS 55.0%
GGTCTCCCCATAGACCTCAT+CGG + chr8.4:49002729-49002748 None:intergenic 55.0%
GTGCATTGCTTCCTCATCCG+AGG - chr8.4:49003323-49003342 MS.gene38979:CDS 55.0%
TCATTGTGGCTCACAGCACC+AGG + chr8.4:49004206-49004225 None:intergenic 55.0%
TTGGGCTGAGAGGACCACAT+GGG - chr8.4:49003234-49003253 MS.gene38979:CDS 55.0%
! CTGATGTGTGCAGAGAGCAC+GGG - chr8.4:49003737-49003756 MS.gene38979:CDS 55.0%
! TGCTGTTTGGTAGGACAGGG+TGG - chr8.4:49003491-49003510 MS.gene38979:CDS 55.0%
!! AGGCTCCGGCATTGGTTTCA+AGG - chr8.4:49003819-49003838 MS.gene38979:CDS 55.0%
!! AGGGTGGATTGGAGGTTTGC+TGG - chr8.4:49003507-49003526 MS.gene38979:CDS 55.0%
!! CCGAGGATGTTGATGATGCC+TGG - chr8.4:49003340-49003359 MS.gene38979:CDS 55.0%
!! CTCCGGCATTGGTTTCAAGG+AGG - chr8.4:49003822-49003841 MS.gene38979:CDS 55.0%
!! GGGTGGATTGGAGGTTTGCT+GGG - chr8.4:49003508-49003527 MS.gene38979:CDS 55.0%
!! GGTGGATTGGAGGTTTGCTG+GGG - chr8.4:49003509-49003528 MS.gene38979:CDS 55.0%
ATCCAGCTGCCCCCGTAATG+AGG + chr8.4:49002361-49002380 None:intergenic 60.0%
ATCCTCATTACGGGGGCAGC+TGG - chr8.4:49002356-49002375 MS.gene38979:CDS 60.0%
ATGGCTTCGGACAAGCCGGT+TGG + chr8.4:49002402-49002421 None:intergenic 60.0%
CATCCAGAAGGCTCCGGCAT+TGG - chr8.4:49003811-49003830 MS.gene38979:CDS 60.0%
CTGACATCCCCCCACCAATC+AGG + chr8.4:49003301-49003320 None:intergenic 60.0%
CTGCGGAGTGGCAGTGTTCT+TGG + chr8.4:49003452-49003471 None:intergenic 60.0%
GATTGGTGGGGGGATGTCAG+TGG - chr8.4:49003301-49003320 MS.gene38979:CDS 60.0%
GCAGCACATCCAGAAGGCTC+CGG - chr8.4:49003805-49003824 MS.gene38979:CDS 60.0%
GCCAGCAACATTAGCGCGGA+TGG + chr8.4:49003704-49003723 None:intergenic 60.0%
GTTGGGCTGAGAGGACCACA+TGG - chr8.4:49003233-49003252 MS.gene38979:CDS 60.0%
!! GGTAGGACAGGGTGGATTGG+AGG - chr8.4:49003499-49003518 MS.gene38979:CDS 60.0%
CGGGATGGCTTCGGACAAGC+CGG + chr8.4:49002406-49002425 None:intergenic 65.0%
TGGTCCTCTCAGCCCAACCG+AGG + chr8.4:49003231-49003250 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 49002332 49004427 49002332 ID=MS.gene38979
chr8.4 mRNA 49002332 49004427 49002332 ID=MS.gene38979.t1;Parent=MS.gene38979
chr8.4 exon 49002865 49004427 49002865 ID=MS.gene38979.t1.exon1;Parent=MS.gene38979.t1
chr8.4 CDS 49002865 49004427 49002865 ID=cds.MS.gene38979.t1;Parent=MS.gene38979.t1
chr8.4 exon 49002332 49002775 49002332 ID=MS.gene38979.t1.exon2;Parent=MS.gene38979.t1
chr8.4 CDS 49002332 49002775 49002332 ID=cds.MS.gene38979.t1;Parent=MS.gene38979.t1
Gene Sequence

>MS.gene38979

ATGGCTTCGTATACACCGAAGAATATCCTCATTACGGGGGCAGCTGGATTTATTGCATCTCATGTTGCCAACCGGCTTGTCCGAAGCCATCCCGAGTACAAAATTGTTGTGCTTGATAAACTAGATTATTGTTCTAATTTAAAGAATCTCCTTCCTTCGAAATCATCTCCCAACTTTAAGTTTGTCAAGGGGGATATCGGTAGTGCTGATCTTGTCAACTACTTGCTTATTACGGAGTCGATTGACACGATAATGCACTTTGCTGCTCAAACTCATGTCGACAACTCATTTGGTAATAGTTTTGAGTTCACCAAGAACAACATATATGGAACTCATGTCTTATTAGAAGCCTGCAAGGTTACTGGCCAGATCAGAAGGTTCATTCATGTCAGTACCGATGAGGTCTATGGGGAGACCGATGAAGATGCTATTGTTGGAAACCATGAGGCTTCTCAACTTCTTCCCACAAACCCGTACTCTGCAACAAAAGCAGGAGCAGAAATGCTTGTCATGGCATATGGTAGGTCATACGGGTTACCTGTTATCACAACACGTGGAAACAATGTTTATGGGCCAAATCAGTTTCCCGAGAAGTTGATTCCAAAGTTCATCCTTTTGGCTATGCAAGGAAAGACTCTTCCCATTCATGGGGATGGTTCTAATGTGAGGAGTTATTTGTATTGTGAAGATGTTGCTGAGGCATTTGAAGTTGTTCTTCACAAGGGAGAGGTTGGCCATGTTTACAATATCGGGACAAAGAAGGAAAGGGGAGTTATTGACGTAGCCAAGGATATATGCAGGCTTTTCTCGATGGATCCAGAAGCTAACATTAAATTTGTTGAGAACAGACCGTTTAATGACCAGAGATACTTTCTCGATGATCAGAAGCTGAAAAACCTCGGTTGGGCTGAGAGGACCACATGGGATGAAGGACTGAAGAAAACCATAGAATGGTATACCAAAAATCCTGATTGGTGGGGGGATGTCAGTGGTGCATTGCTTCCTCATCCGAGGATGTTGATGATGCCTGGTGGAATGGAGAGACATTTTGAAGGATCCGAAGGCGAAAATCCCGCATCAGTCAATTCATCTAATACTCGTATGGTGGTCCCATCAACCAAGAACACTGCCACTCCGCAGAAACATCCTTTGAAGTTCTTGCTGTTTGGTAGGACAGGGTGGATTGGAGGTTTGCTGGGGAAATTGTGTGAAAAGCAAGGAATTCCATATGAATATGCAAAGGGTCGTCTAGAAGATCGTGCATCACTCATTTCTGATATTCAGAATGTGAAGCCAACCCATGTTTTTAATGCTGCAGGTGTCACCGGAAGACCCAATGTTGATTGGTGCGAAACTCATAAAACAGAAACCATCCGCGCTAATGTTGCTGGCACTTTAACATTGGCTGATGTGTGCAGAGAGCACGGGATCTTGATGATAAATTATGCTACTGGCTGCATATTTGAGTACGATGCAGCACATCCAGAAGGCTCCGGCATTGGTTTCAAGGAGGAAGACAAGCCCAATTTCATGGGATCTTTCTATTCCAAAACTAAAGCTATGGTAAGTTTCCTTAAATAGAACGATCTTATTTATCACCTTTGCATTATGAATTTTTTTCAAACAGTAACTCTTAATTGAATTTTGATCAGGTTGAGGAACTCTTGAGAGAATATGACAATGTATGCACCCTTAGGGTTCGTATGCCGATTTCATCTGATCTGAGCAACCCACGCAACTTCATCACAAAGATTTCTCGTTATAACAAAGTTGTCAACATTCCAAACAGCATGACAGTATTGGATGAACTTCTACCTATTTCAATCGAGATGGCAAAGAGAAACTTGAGTGGAATCTGGAACTTCACTAACCCTGGTGCTGTGAGCCACAATGAGATCCTTGAGATGTATAGGGATTACATTGACCCCAGTTTCAAGTGGCAGAATTTCACGCTTGAAGAGCAAGCCAAGGTAATTGTCGCTGCTCGAAGCAACAATGAGATGGATGGTGCCAAATTAAAGAAAGAATTCCCAGAATTGCTTTCCATCAAAGAATCACTTATCAAGTATGTCTTCGTGCCAAACAAGAAGAAATAA
Protein sequence

>MS.gene38979.t1

MASYTPKNILITGAAGFIASHVANRLVRSHPEYKIVVLDKLDYCSNLKNLLPSKSSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAIVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKTLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEVGHVYNIGTKKERGVIDVAKDICRLFSMDPEANIKFVENRPFNDQRYFLDDQKLKNLGWAERTTWDEGLKKTIEWYTKNPDWWGDVSGALLPHPRMLMMPGGMERHFEGSEGENPASVNSSNTRMVVPSTKNTATPQKHPLKFLLFGRTGWIGGLLGKLCEKQGIPYEYAKGRLEDRASLISDIQNVKPTHVFNAAGVTGRPNVDWCETHKTETIRANVAGTLTLADVCREHGILMINYATGCIFEYDAAHPEGSGIGFKEEDKPNFMGSFYSKTKAMVEELLREYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLSGIWNFTNPGAVSHNEILEMYRDYIDPSFKWQNFTLEEQAKVIVAARSNNEMDGAKLKKEFPELLSIKESLIKYVFVPNKKK