Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39196.t1 | RHN79333.1 | 94.6 | 392 | 21 | 0 | 1 | 392 | 1 | 392 | 3.80E-209 | 737.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39196.t1 | A0A396JSN3 | 94.6 | 392 | 21 | 0 | 1 | 392 | 1 | 392 | 2.7e-209 | 737.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050317 | MS.gene39196 | 0.80446 | 2.14E-49 | -1.69E-46 |
| MS.gene050838 | MS.gene39196 | 0.807534 | 4.82E-50 | -1.69E-46 |
| MS.gene058054 | MS.gene39196 | 0.812583 | 3.94E-51 | -1.69E-46 |
| MS.gene058055 | MS.gene39196 | 0.813243 | 2.82E-51 | -1.69E-46 |
| MS.gene058639 | MS.gene39196 | 0.802791 | 4.75E-49 | -1.69E-46 |
| MS.gene060563 | MS.gene39196 | 0.818092 | 2.35E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39196.t1 | MTR_1g054715 | 99.231 | 390 | 3 | 0 | 1 | 390 | 1 | 390 | 0.0 | 801 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39196.t1 | AT3G11950 | 60.000 | 340 | 128 | 3 | 7 | 344 | 1 | 334 | 1.27e-154 | 448 |
| MS.gene39196.t1 | AT3G11950 | 60.000 | 340 | 128 | 3 | 7 | 344 | 1 | 334 | 1.27e-154 | 448 |
| MS.gene39196.t1 | AT3G11950 | 60.000 | 340 | 128 | 3 | 7 | 344 | 1 | 334 | 1.27e-154 | 448 |
| MS.gene39196.t1 | AT3G11950 | 60.000 | 340 | 128 | 3 | 7 | 344 | 1 | 334 | 1.27e-154 | 448 |
| MS.gene39196.t1 | AT3G11950 | 60.000 | 340 | 128 | 3 | 7 | 344 | 1 | 334 | 1.27e-154 | 448 |
Find 73 sgRNAs with CRISPR-Local
Find 350 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTAATGCACTTGCTTAA+AGG | 0.113512 | 1.2:+42286255 | MS.gene39196:CDS |
| GTCTTCACTGTCTTCATTCT+TGG | 0.160455 | 1.2:-42290124 | None:intergenic |
| TCACATGGAATTATCTTAAA+AGG | 0.281351 | 1.2:-42286072 | None:intergenic |
| AATTTATTGAGTCAGGTTTC+GGG | 0.289208 | 1.2:+42285769 | MS.gene39196:CDS |
| TTCGTCTTTGTTAACAAAAC+TGG | 0.295145 | 1.2:-42285941 | None:intergenic |
| GAATTTATTGAGTCAGGTTT+CGG | 0.295772 | 1.2:+42285768 | MS.gene39196:CDS |
| TAGCCTTATGAGGCGTGATA+TGG | 0.344694 | 1.2:+42286110 | MS.gene39196:CDS |
| TGAAGCTAAGCTAGGGCCTT+TGG | 0.348568 | 1.2:+42290062 | MS.gene39196:CDS |
| TGTTGCTGAGACTGTTATCT+TGG | 0.399244 | 1.2:+42285663 | MS.gene39196:CDS |
| GTTTAGCGCGGTTCATTTGA+AGG | 0.406768 | 1.2:+42286032 | MS.gene39196:CDS |
| GAAGAGGAATTTATTGAGTC+AGG | 0.419021 | 1.2:+42285762 | MS.gene39196:CDS |
| ATCGGCTATTGCGCAATGTA+TGG | 0.422921 | 1.2:+42286200 | MS.gene39196:CDS |
| AACTGCCCTTTCTATGCTGT+TGG | 0.425142 | 1.2:+42286171 | MS.gene39196:CDS |
| TACAGGCATCAACAAACAAT+AGG | 0.435764 | 1.2:+42289989 | MS.gene39196:intron |
| GCTTGTGTTGATAACACAAC+TGG | 0.444341 | 1.2:+42285562 | MS.gene39196:CDS |
| CTATGCTGTTGGTTGTCGAT+CGG | 0.449296 | 1.2:+42286182 | MS.gene39196:CDS |
| TGTCCATATCACGCCTCATA+AGG | 0.451239 | 1.2:-42286113 | None:intergenic |
| GTTCAGTTGCGGATGGTTTG+AGG | 0.469645 | 1.2:+42285599 | MS.gene39196:CDS |
| ATCTGTGACCTGCGATAATG+AGG | 0.473160 | 1.2:+42285996 | MS.gene39196:CDS |
| GTTGGCTCAAATGTTTCTGC+CGG | 0.479339 | 1.2:+42285528 | MS.gene39196:CDS |
| AGGATTGAAAATGAGAAAGA+AGG | 0.492296 | 1.2:+42285457 | MS.gene39196:CDS |
| GTTCAGGAGATGGAAATGAA+TGG | 0.500637 | 1.2:+42285835 | MS.gene39196:CDS |
| AAACTAGAAATAATATCAAA+AGG | 0.501827 | 1.2:-42285718 | None:intergenic |
| AGAGATCTTGAAGCTAAGCT+AGG | 0.503265 | 1.2:+42290054 | MS.gene39196:CDS |
| TCTATGAGATTGACTTCCAA+AGG | 0.522809 | 1.2:-42290078 | None:intergenic |
| AATAATATCAAAAGGATGAT+CGG | 0.523155 | 1.2:-42285710 | None:intergenic |
| GACACAGGCACGGAAACAAA+GGG | 0.526060 | 1.2:+42290144 | MS.gene39196:CDS |
| GGGCAGTTCACAAGCTTCAT+CGG | 0.528102 | 1.2:-42286156 | None:intergenic |
| CGACAACCAACAGCATAGAA+AGG | 0.528343 | 1.2:-42286177 | None:intergenic |
| AAACCATCCGCAACTGAACC+AGG | 0.528729 | 1.2:-42285595 | None:intergenic |
| TCTGTACACTTCTGCTCACA+TGG | 0.532465 | 1.2:-42286087 | None:intergenic |
| TTGGCTCAAATGTTTCTGCC+GGG | 0.539679 | 1.2:+42285529 | MS.gene39196:CDS |
| CCATTGTGATTTGCATGATA+CGG | 0.541523 | 1.2:+42285492 | MS.gene39196:CDS |
| GGCATCCACAAGGATGCATC+CGG | 0.542874 | 1.2:+42286276 | MS.gene39196:CDS |
| TTATGAGGCGTGATATGGAC+AGG | 0.553179 | 1.2:+42286115 | MS.gene39196:CDS |
| GACAACCAACAGCATAGAAA+GGG | 0.556536 | 1.2:-42286176 | None:intergenic |
| GCTATTGCGCAATGTATGGT+TGG | 0.558045 | 1.2:+42286204 | MS.gene39196:CDS |
| CAACACACCTGGTTCAGTTG+CGG | 0.561259 | 1.2:+42285588 | MS.gene39196:CDS |
| AAGAGTAGAACAGATTGTAC+AGG | 0.568687 | 1.2:+42286314 | MS.gene39196:CDS |
| AGACACAGGCACGGAAACAA+AGG | 0.570576 | 1.2:+42290143 | MS.gene39196:CDS |
| TGCAAATCACAATGGAACAT+TGG | 0.574064 | 1.2:-42285484 | None:intergenic |
| GAGACTGTTATCTTGGATGA+TGG | 0.574553 | 1.2:+42285670 | MS.gene39196:CDS |
| TTGGATGATGGTGCGGATGG+TGG | 0.576679 | 1.2:+42285682 | MS.gene39196:CDS |
| AAGGAAGAAACTCACCGACA+TGG | 0.577979 | 1.2:-42284978 | None:intergenic |
| GAAAGATCCACGTCAACGGT+TGG | 0.586244 | 1.2:-42285427 | None:intergenic |
| GGAAGCGCCAACCGTTGACG+TGG | 0.586376 | 1.2:+42285420 | MS.gene39196:CDS |
| ATCTTGGATGATGGTGCGGA+TGG | 0.589438 | 1.2:+42285679 | MS.gene39196:CDS |
| AGTTGCGGATGGTTTGAGGA+AGG | 0.592013 | 1.2:+42285603 | MS.gene39196:CDS |
| ACACCTGGTTCAGTTGCGGA+TGG | 0.596519 | 1.2:+42285592 | MS.gene39196:CDS |
| ATTGCATCCCTCATTATCGC+AGG | 0.597446 | 1.2:-42286004 | None:intergenic |
| TGAAGTTACAATTATCAACA+TGG | 0.598667 | 1.2:-42285972 | None:intergenic |
| CTCCACCGGATGCATCCTTG+TGG | 0.601442 | 1.2:-42286281 | None:intergenic |
| TCTTCGATTAAGATCTCCAC+CGG | 0.603492 | 1.2:-42286295 | None:intergenic |
| ACAACTGGCTTCAACACACC+TGG | 0.605123 | 1.2:+42285577 | MS.gene39196:CDS |
| GAGATCTTGAAGCTAAGCTA+GGG | 0.610250 | 1.2:+42290055 | MS.gene39196:CDS |
| GAAGTTACAATTATCAACAT+GGG | 0.610841 | 1.2:-42285971 | None:intergenic |
| AGGAAGAAACTCACCGACAT+GGG | 0.618238 | 1.2:-42284977 | None:intergenic |
| TACGGAAGTAGTTCACAAGT+TGG | 0.621304 | 1.2:+42285510 | MS.gene39196:CDS |
| AGTGTACAGATAGCCTTATG+AGG | 0.626223 | 1.2:+42286100 | MS.gene39196:CDS |
| TATTGAGTCAGGTTTCGGGA+TGG | 0.626853 | 1.2:+42285773 | MS.gene39196:CDS |
| AGGCGAAAGATCCACGTCAA+CGG | 0.627431 | 1.2:-42285431 | None:intergenic |
| CCGTATCATGCAAATCACAA+TGG | 0.628266 | 1.2:-42285492 | None:intergenic |
| ACACAAGCAGAAGCTAGACC+CGG | 0.634233 | 1.2:-42285547 | None:intergenic |
| ACGTGGATCTTTCGCCTGCG+AGG | 0.635983 | 1.2:+42285437 | MS.gene39196:CDS |
| ATTGAAAATGAGAAAGAAGG+AGG | 0.639437 | 1.2:+42285460 | MS.gene39196:CDS |
| CTTGCTTAAAGGCATCCACA+AGG | 0.652007 | 1.2:+42286266 | MS.gene39196:CDS |
| ATCCACAAGGATGCATCCGG+TGG | 0.656272 | 1.2:+42286279 | MS.gene39196:CDS |
| ATGCAATGCGAGGTTTAGCG+CGG | 0.663261 | 1.2:+42286020 | MS.gene39196:CDS |
| TGTTATCTTGGATGATGGTG+CGG | 0.668976 | 1.2:+42285675 | MS.gene39196:CDS |
| AGACAGTGAAGACACAGGCA+CGG | 0.690996 | 1.2:+42290134 | MS.gene39196:CDS |
| TCTGTGACCTGCGATAATGA+GGG | 0.696713 | 1.2:+42285997 | MS.gene39196:CDS |
| ATAATGAGGGATGCAATGCG+AGG | 0.701753 | 1.2:+42286010 | MS.gene39196:CDS |
| AATGAAGACAGTGAAGACAC+AGG | 0.715607 | 1.2:+42290129 | MS.gene39196:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCTCAAAAAAAAAAAAAA+AGG | + | chr1.2:42286669-42286688 | MS.gene39196:intron | 10.0% |
| !!! | AATTCATTTATAATTTGTTT+AGG | - | chr1.2:42287786-42287805 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTATAAACTCAAA+CGG | - | chr1.2:42286954-42286973 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTTTAAACC+TGG | - | chr1.2:42287124-42287143 | None:intergenic | 10.0% |
| !! | AAAAAAATAATTAATGATGG+TGG | - | chr1.2:42288857-42288876 | None:intergenic | 15.0% |
| !! | AAAAAATAATTAATGATGGT+GGG | - | chr1.2:42288856-42288875 | None:intergenic | 15.0% |
| !! | AAACTAGAAATAATATCAAA+AGG | - | chr1.2:42285721-42285740 | None:intergenic | 15.0% |
| !! | AATAAATTAGATTTCAAACA+AGG | + | chr1.2:42289159-42289178 | MS.gene39196:intron | 15.0% |
| !! | ATTGATTATTGATAAAACAA+GGG | + | chr1.2:42285327-42285346 | MS.gene39196:intron | 15.0% |
| !! | CAAAAAAAAAAAAAAAGGTA+CGG | + | chr1.2:42286674-42286693 | MS.gene39196:intron | 15.0% |
| !!! | AAAAAAAAAAAAAAAGGTAC+GGG | + | chr1.2:42286675-42286694 | MS.gene39196:intron | 15.0% |
| !!! | TATTTATAAAATTTGTTGGT+AGG | + | chr1.2:42285384-42285403 | MS.gene39196:intron | 15.0% |
| !!! | TTGGTTTTAAAAAAAAACAA+GGG | - | chr1.2:42288652-42288671 | None:intergenic | 15.0% |
| !!! | TTTGAATTTTGATATTATGT+TGG | - | chr1.2:42288491-42288510 | None:intergenic | 15.0% |
| !! | AAAAAAAAATTGGTACATCA+TGG | + | chr1.2:42287135-42287154 | MS.gene39196:intron | 20.0% |
| !! | AAAAAAAATTGGTACATCAT+GGG | + | chr1.2:42287136-42287155 | MS.gene39196:intron | 20.0% |
| !! | AAAGAAAAAACTGAACTATT+TGG | - | chr1.2:42288950-42288969 | None:intergenic | 20.0% |
| !! | AATAATATCAAAAGGATGAT+CGG | - | chr1.2:42285713-42285732 | None:intergenic | 20.0% |
| !! | ATGTACAACAATATAATTAG+GGG | + | chr1.2:42289320-42289339 | MS.gene39196:intron | 20.0% |
| !! | CATGTACAACAATATAATTA+GGG | + | chr1.2:42289319-42289338 | MS.gene39196:intron | 20.0% |
| !! | CATTAATAACTCTATCTATA+TGG | - | chr1.2:42286354-42286373 | None:intergenic | 20.0% |
| !! | GATACATGTATTATTATGTT+TGG | + | chr1.2:42289687-42289706 | MS.gene39196:intron | 20.0% |
| !! | TAAAACCTTTCATAAGATTT+AGG | - | chr1.2:42288406-42288425 | None:intergenic | 20.0% |
| !! | TCTCCATTTATTATTATGAA+AGG | - | chr1.2:42288109-42288128 | None:intergenic | 20.0% |
| !! | TCTCCTTTCATAATAATAAA+TGG | + | chr1.2:42288103-42288122 | MS.gene39196:intron | 20.0% |
| !! | TGAGAATTAATAGCAATTAT+AGG | - | chr1.2:42287027-42287046 | None:intergenic | 20.0% |
| !! | TTATCAAATTGATACAATCT+AGG | - | chr1.2:42285298-42285317 | None:intergenic | 20.0% |
| !! | TTTCATACTGAATTGTATAT+AGG | + | chr1.2:42289882-42289901 | MS.gene39196:intron | 20.0% |
| !!! | AATTATCAGTTCTTTTCTTT+AGG | - | chr1.2:42288543-42288562 | None:intergenic | 20.0% |
| !!! | ATTTTTTTCTTGAGAAAATG+AGG | - | chr1.2:42287057-42287076 | None:intergenic | 20.0% |
| !!! | CAGTTTTTGTATTTACAAAA+TGG | + | chr1.2:42285143-42285162 | MS.gene39196:intron | 20.0% |
| !!! | CATTGATTATTGATAAAACA+AGG | + | chr1.2:42285326-42285345 | MS.gene39196:intron | 20.0% |
| !!! | CATTTTGTAAATACAAAAAC+TGG | - | chr1.2:42285145-42285164 | None:intergenic | 20.0% |
| !!! | CTTGGTTTTAAAAAAAAACA+AGG | - | chr1.2:42288653-42288672 | None:intergenic | 20.0% |
| !!! | CTTGTTTTTTTTTAAAACCA+AGG | + | chr1.2:42288651-42288670 | MS.gene39196:intron | 20.0% |
| !!! | GCTTTTATAGAATATGAAAA+AGG | + | chr1.2:42286792-42286811 | MS.gene39196:intron | 20.0% |
| !!! | GGATTTAATGTTTTGAATTT+TGG | - | chr1.2:42288522-42288541 | None:intergenic | 20.0% |
| !!! | GTAACCTTACATTTTTTTTT+GGG | - | chr1.2:42289201-42289220 | None:intergenic | 20.0% |
| !!! | GTTTTATCAATAATCAATGA+TGG | - | chr1.2:42285325-42285344 | None:intergenic | 20.0% |
| !!! | GTTTTTTCATGAGAATTAAT+AGG | - | chr1.2:42286993-42287012 | None:intergenic | 20.0% |
| !!! | TAAAATAGATGATTTTGTTC+AGG | + | chr1.2:42285819-42285838 | MS.gene39196:CDS | 20.0% |
| !!! | TAAATTTTTAGACACTAATG+AGG | + | chr1.2:42289614-42289633 | MS.gene39196:intron | 20.0% |
| !!! | TAACCTTACATTTTTTTTTG+GGG | - | chr1.2:42289200-42289219 | None:intergenic | 20.0% |
| !!! | TAATTTAAAATAACATGGCA+AGG | + | chr1.2:42286722-42286741 | MS.gene39196:intron | 20.0% |
| !!! | TACAATTTGTTTCATAAATC+TGG | + | chr1.2:42287839-42287858 | MS.gene39196:intron | 20.0% |
| !!! | TATAATTGCTATTAATTCTC+AGG | + | chr1.2:42287026-42287045 | MS.gene39196:intron | 20.0% |
| !!! | TCATTTTCTCAAGAAAAAAA+TGG | + | chr1.2:42287056-42287075 | MS.gene39196:intron | 20.0% |
| !!! | TTTCGTAATGTTTTGAATTT+TGG | - | chr1.2:42288456-42288475 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTAAACCTGGTA+TGG | - | chr1.2:42287119-42287138 | None:intergenic | 20.0% |
| ! | AAACTAAAACATCAACACAA+TGG | - | chr1.2:42287981-42288000 | None:intergenic | 25.0% |
| ! | AATTATATTGTTGTACATGG+TGG | - | chr1.2:42289318-42289337 | None:intergenic | 25.0% |
| ! | AGAGAAAACTGAAGTTATTA+GGG | + | chr1.2:42288604-42288623 | MS.gene39196:intron | 25.0% |
| ! | AGATAAGAAGATACAAGAAA+AGG | + | chr1.2:42286816-42286835 | MS.gene39196:intron | 25.0% |
| ! | AGTTATTAATGAATGTGGAT+CGG | + | chr1.2:42286363-42286382 | MS.gene39196:intron | 25.0% |
| ! | ATCACATAAACTATATCACA+TGG | + | chr1.2:42287723-42287742 | MS.gene39196:intron | 25.0% |
| ! | ATGAATTAAAACAAGATTCC+TGG | + | chr1.2:42287799-42287818 | MS.gene39196:intron | 25.0% |
| ! | ATGTGATATAGTTTATGTGA+TGG | - | chr1.2:42287724-42287743 | None:intergenic | 25.0% |
| ! | CCATGTACAACAATATAATT+AGG | + | chr1.2:42289318-42289337 | MS.gene39196:intron | 25.0% |
| ! | CCTAATTATATTGTTGTACA+TGG | - | chr1.2:42289321-42289340 | None:intergenic | 25.0% |
| ! | CTAGCATTTCTTTATATCTT+CGG | + | chr1.2:42285078-42285097 | MS.gene39196:intron | 25.0% |
| ! | GAAGTTACAATTATCAACAT+GGG | - | chr1.2:42285974-42285993 | None:intergenic | 25.0% |
| ! | GATAGAGTTATTAATGAATG+TGG | + | chr1.2:42286358-42286377 | MS.gene39196:intron | 25.0% |
| ! | TCACATGGAATTATCTTAAA+AGG | - | chr1.2:42286075-42286094 | None:intergenic | 25.0% |
| ! | TCATCATTAATAGGACTAAT+AGG | + | chr1.2:42287516-42287535 | MS.gene39196:intron | 25.0% |
| ! | TCCTAAAAGTTATGAAATAG+CGG | - | chr1.2:42288271-42288290 | None:intergenic | 25.0% |
| ! | TGAAGTTACAATTATCAACA+TGG | - | chr1.2:42285975-42285994 | None:intergenic | 25.0% |
| ! | TGAATTAAAACAAGATTCCT+GGG | + | chr1.2:42287800-42287819 | MS.gene39196:intron | 25.0% |
| ! | TGATTATGACAAGAAAAATC+AGG | - | chr1.2:42289947-42289966 | None:intergenic | 25.0% |
| ! | TGCAGCATTTGTTTATATTT+GGG | + | chr1.2:42289912-42289931 | MS.gene39196:intron | 25.0% |
| ! | TTGCAGCATTTGTTTATATT+TGG | + | chr1.2:42289911-42289930 | MS.gene39196:intron | 25.0% |
| ! | TTGGAAATACACACAAAAAA+AGG | + | chr1.2:42288136-42288155 | MS.gene39196:intron | 25.0% |
| !! | ACATGGTTTTCTACTTTAAA+AGG | + | chr1.2:42287740-42287759 | MS.gene39196:intron | 25.0% |
| !! | ACTATTTTCAGTTTCAAAAG+AGG | + | chr1.2:42287259-42287278 | MS.gene39196:intron | 25.0% |
| !! | ATTCATTAACAATAGTTCTG+AGG | + | chr1.2:42289846-42289865 | MS.gene39196:intron | 25.0% |
| !! | CGAATTATTTGTCTTATTAC+AGG | + | chr1.2:42289972-42289991 | MS.gene39196:intron | 25.0% |
| !! | TACACCATTAGAAGTTTTTA+AGG | + | chr1.2:42286575-42286594 | MS.gene39196:intron | 25.0% |
| !! | TTTTTGTGTGTATTTCCAAA+TGG | - | chr1.2:42288135-42288154 | None:intergenic | 25.0% |
| !!! | AACCTTACATTTTTTTTTGG+GGG | - | chr1.2:42289199-42289218 | None:intergenic | 25.0% |
| !!! | AAGGGTTCATTTTTTAATTG+TGG | + | chr1.2:42287759-42287778 | MS.gene39196:intron | 25.0% |
| !!! | ATTTTAACATGTAGTTCATC+CGG | - | chr1.2:42287904-42287923 | None:intergenic | 25.0% |
| !!! | CATGGTTTTCTACTTTAAAA+GGG | + | chr1.2:42287741-42287760 | MS.gene39196:intron | 25.0% |
| !!! | CATGTTTTTGAAGAATTCTT+TGG | + | chr1.2:42285202-42285221 | MS.gene39196:intron | 25.0% |
| !!! | GGTAACCTTACATTTTTTTT+TGG | - | chr1.2:42289202-42289221 | None:intergenic | 25.0% |
| !!! | TAGGATTAGTTTGTAGTTTA+TGG | + | chr1.2:42287404-42287423 | MS.gene39196:intron | 25.0% |
| !!! | TTCATTAACAATAGTTCTGA+GGG | + | chr1.2:42289847-42289866 | MS.gene39196:intron | 25.0% |
| !!! | TTTTTTACTTCTGCAACTAT+TGG | + | chr1.2:42286854-42286873 | MS.gene39196:intron | 25.0% |
| AAATTATCCAATCCCAAATC+AGG | + | chr1.2:42287448-42287467 | MS.gene39196:intron | 30.0% | |
| AACCACCTAAATCTTATGAA+AGG | + | chr1.2:42288398-42288417 | MS.gene39196:intron | 30.0% | |
| AACCCCCAAAAAAAAATGTA+AGG | + | chr1.2:42289194-42289213 | MS.gene39196:intron | 30.0% | |
| AACCTTTCATAAGATTTAGG+TGG | - | chr1.2:42288403-42288422 | None:intergenic | 30.0% | |
| AAGAGATAAAGACGCATAAA+AGG | - | chr1.2:42288883-42288902 | None:intergenic | 30.0% | |
| AATAAATGGAGAATGCCATT+TGG | + | chr1.2:42288117-42288136 | MS.gene39196:intron | 30.0% | |
| AATTTATTGAGTCAGGTTTC+GGG | + | chr1.2:42285769-42285788 | MS.gene39196:CDS | 30.0% | |
| AGAAACAATTGCAGAGAAAA+AGG | - | chr1.2:42285008-42285027 | None:intergenic | 30.0% | |
| AGAACGAATAATAACAGATG+TGG | - | chr1.2:42286415-42286434 | None:intergenic | 30.0% | |
| AGGATTGAAAATGAGAAAGA+AGG | + | chr1.2:42285457-42285476 | MS.gene39196:CDS | 30.0% | |
| AGTCATACGCTAATACATAA+AGG | - | chr1.2:42289804-42289823 | None:intergenic | 30.0% | |
| ATACACACAAAAAAAGGATG+TGG | + | chr1.2:42288142-42288161 | MS.gene39196:intron | 30.0% | |
| ATATGAGACTGTAACTAAGA+AGG | + | chr1.2:42289131-42289150 | MS.gene39196:intron | 30.0% | |
| ATCAAGTACTCAATTTCTGT+TGG | + | chr1.2:42289774-42289793 | MS.gene39196:intron | 30.0% | |
| ATTCTATTCGATAAAATCCC+AGG | - | chr1.2:42287820-42287839 | None:intergenic | 30.0% | |
| ATTGAAAATGAGAAAGAAGG+AGG | + | chr1.2:42285460-42285479 | MS.gene39196:CDS | 30.0% | |
| CAAATGGAGAAAGACATAAT+TGG | + | chr1.2:42288903-42288922 | MS.gene39196:intron | 30.0% | |
| GAAAAAACTGAACTATTTGG+TGG | - | chr1.2:42288947-42288966 | None:intergenic | 30.0% | |
| GAAAAGAACTGATAATTCCA+AGG | + | chr1.2:42288546-42288565 | MS.gene39196:intron | 30.0% | |
| GAATTTATTGAGTCAGGTTT+CGG | + | chr1.2:42285768-42285787 | MS.gene39196:CDS | 30.0% | |
| GAGAGAAAACTGAAGTTATT+AGG | + | chr1.2:42288603-42288622 | MS.gene39196:intron | 30.0% | |
| GCTAGTATAGAATACGATAA+AGG | + | chr1.2:42286761-42286780 | MS.gene39196:intron | 30.0% | |
| GTATAGAATACGATAAAGGA+AGG | + | chr1.2:42286765-42286784 | MS.gene39196:intron | 30.0% | |
| TACACACAAAAAAAGGATGT+GGG | + | chr1.2:42288143-42288162 | MS.gene39196:intron | 30.0% | |
| TATAGTGGTGAAAAATGTTG+TGG | - | chr1.2:42289387-42289406 | None:intergenic | 30.0% | |
| TATGAGACTGTAACTAAGAA+GGG | + | chr1.2:42289132-42289151 | MS.gene39196:intron | 30.0% | |
| TATTGGCAGATAAGAAAAAG+TGG | + | chr1.2:42286871-42286890 | MS.gene39196:intron | 30.0% | |
| TCAAAAGAGAAGATTTGATC+AGG | - | chr1.2:42289245-42289264 | None:intergenic | 30.0% | |
| TCAATGGCATCATCATTAAT+AGG | + | chr1.2:42287507-42287526 | MS.gene39196:intron | 30.0% | |
| TCATTAATAGGACTAATAGG+AGG | + | chr1.2:42287519-42287538 | MS.gene39196:intron | 30.0% | |
| TCTGTTATTATTCGTTCTAG+CGG | + | chr1.2:42286417-42286436 | MS.gene39196:intron | 30.0% | |
| TGAGCCTTAAAAACTTCTAA+TGG | - | chr1.2:42286582-42286601 | None:intergenic | 30.0% | |
| TTCGTCTTTGTTAACAAAAC+TGG | - | chr1.2:42285944-42285963 | None:intergenic | 30.0% | |
| TTCTTAGTTACAGTCTCATA+TGG | - | chr1.2:42289132-42289151 | None:intergenic | 30.0% | |
| TTGTAATGTACCGTTCAAAA+CGG | - | chr1.2:42285107-42285126 | None:intergenic | 30.0% | |
| TTTATCCTGTCTTTCATCAA+TGG | + | chr1.2:42289102-42289121 | MS.gene39196:intron | 30.0% | |
| TTTATGTGATGGCTAATTCA+AGG | - | chr1.2:42287713-42287732 | None:intergenic | 30.0% | |
| ! | AGATGGAAATGAATGGTTTT+TGG | + | chr1.2:42285842-42285861 | MS.gene39196:CDS | 30.0% |
| ! | ATGAAGAGAGAATATGGTTT+TGG | - | chr1.2:42287488-42287507 | None:intergenic | 30.0% |
| ! | GAAACTGAAAATAGTTTGCA+AGG | - | chr1.2:42287254-42287273 | None:intergenic | 30.0% |
| ! | GATAAAATTTTAAACGCGCA+GGG | - | chr1.2:42286465-42286484 | None:intergenic | 30.0% |
| ! | GGAATTGAAGTATCTTTGAA+AGG | - | chr1.2:42287873-42287892 | None:intergenic | 30.0% |
| ! | GGTAGCTTTTATAGATATCT+AGG | + | chr1.2:42287425-42287444 | MS.gene39196:intron | 30.0% |
| ! | TGATAAAATTTTAAACGCGC+AGG | - | chr1.2:42286466-42286485 | None:intergenic | 30.0% |
| ! | TTTTAAACCTGGTATGGTTA+CGG | - | chr1.2:42287113-42287132 | None:intergenic | 30.0% |
| !! | ACCGCTATTTCATAACTTTT+AGG | + | chr1.2:42288267-42288286 | MS.gene39196:intron | 30.0% |
| !! | CGTAATGTTTTGAATTTTGG+TGG | - | chr1.2:42288453-42288472 | None:intergenic | 30.0% |
| !!! | TACAATTTGTTTTGCTCAAC+AGG | - | chr1.2:42285243-42285262 | None:intergenic | 30.0% |
| AAAACAACTATGCAGTGTTG+CGG | + | chr1.2:42288720-42288739 | MS.gene39196:intron | 35.0% | |
| AACACAATGTATCCTTACTC+TGG | - | chr1.2:42288030-42288049 | None:intergenic | 35.0% | |
| AAGAGTAGAACAGATTGTAC+AGG | + | chr1.2:42286314-42286333 | MS.gene39196:CDS | 35.0% | |
| AAGATTTGATCAGGCTTCAA+TGG | - | chr1.2:42289236-42289255 | None:intergenic | 35.0% | |
| AATGTTGTGAATTGCATGAG+TGG | - | chr1.2:42289353-42289372 | None:intergenic | 35.0% | |
| ACAAGATTTCTGCTTCAGAT+TGG | + | chr1.2:42289727-42289746 | MS.gene39196:intron | 35.0% | |
| ACAATTGCAGAGAAAAAGGA+AGG | - | chr1.2:42285004-42285023 | None:intergenic | 35.0% | |
| AGATTTGATCAGGCTTCAAT+GGG | - | chr1.2:42289235-42289254 | None:intergenic | 35.0% | |
| ATGAGACTGTAACTAAGAAG+GGG | + | chr1.2:42289133-42289152 | MS.gene39196:intron | 35.0% | |
| ATTATCAACAGTGAATCCAG+GGG | + | chr1.2:42289021-42289040 | MS.gene39196:intron | 35.0% | |
| CAACAACATTTACTAGACTC+TGG | - | chr1.2:42286920-42286939 | None:intergenic | 35.0% | |
| CACTTAATGCACTTGCTTAA+AGG | + | chr1.2:42286255-42286274 | MS.gene39196:CDS | 35.0% | |
| CATTATCAACAGTGAATCCA+GGG | + | chr1.2:42289020-42289039 | MS.gene39196:intron | 35.0% | |
| CCATATTCTCTCTTCATCAA+TGG | + | chr1.2:42287491-42287510 | MS.gene39196:intron | 35.0% | |
| CCATTGATGAAGAGAGAATA+TGG | - | chr1.2:42287494-42287513 | None:intergenic | 35.0% | |
| CTTCACGTAACATGAAATAG+CGG | + | chr1.2:42288686-42288705 | MS.gene39196:intron | 35.0% | |
| CTTCTCATCATGCATTATAG+TGG | - | chr1.2:42289402-42289421 | None:intergenic | 35.0% | |
| GAAAACCATTGATGAAAGAC+AGG | - | chr1.2:42289110-42289129 | None:intergenic | 35.0% | |
| GAAGACATCTTACTTGATGT+TGG | - | chr1.2:42287591-42287610 | None:intergenic | 35.0% | |
| GAAGAGGAATTTATTGAGTC+AGG | + | chr1.2:42285762-42285781 | MS.gene39196:CDS | 35.0% | |
| GAATACGATAAAGGAAGGAT+TGG | + | chr1.2:42286770-42286789 | MS.gene39196:intron | 35.0% | |
| GAATGTAAGCAGAAAGATGT+TGG | - | chr1.2:42286536-42286555 | None:intergenic | 35.0% | |
| GAGTCTAGTAAATGTTGTTG+TGG | + | chr1.2:42286920-42286939 | MS.gene39196:intron | 35.0% | |
| GATAATTCCAAGGAGATGAA+AGG | + | chr1.2:42288556-42288575 | MS.gene39196:intron | 35.0% | |
| GATGATGACTATCCTGATTT+GGG | - | chr1.2:42287463-42287482 | None:intergenic | 35.0% | |
| TACAGGCATCAACAAACAAT+AGG | + | chr1.2:42289989-42290008 | MS.gene39196:intron | 35.0% | |
| TCATTATCAACAGTGAATCC+AGG | + | chr1.2:42289019-42289038 | MS.gene39196:intron | 35.0% | |
| TCATTATCATACATGCTCTC+TGG | + | chr1.2:42288992-42289011 | MS.gene39196:intron | 35.0% | |
| TGAAAAATGTTGTGGAGTTC+AGG | - | chr1.2:42289379-42289398 | None:intergenic | 35.0% | |
| TGAAGATACAAGATTCTCCT+TGG | - | chr1.2:42288671-42288690 | None:intergenic | 35.0% | |
| TGCAAATCACAATGGAACAT+TGG | - | chr1.2:42285487-42285506 | None:intergenic | 35.0% | |
| TGCGTCTTTATCTCTTCAAA+TGG | + | chr1.2:42288887-42288906 | MS.gene39196:intron | 35.0% | |
| TTAAGATGCAGATCCAGAAT+TGG | - | chr1.2:42287947-42287966 | None:intergenic | 35.0% | |
| ! | ACGATTTTGTAGATTCGAAG+AGG | + | chr1.2:42285746-42285765 | MS.gene39196:CDS | 35.0% |
| ! | AGATGATTTTGTTCAGGAGA+TGG | + | chr1.2:42285825-42285844 | MS.gene39196:CDS | 35.0% |
| ! | CCATTGTGATTTGCATGATA+CGG | + | chr1.2:42285492-42285511 | MS.gene39196:CDS | 35.0% |
| ! | TCTATGAGATTGACTTCCAA+AGG | - | chr1.2:42290081-42290100 | None:intergenic | 35.0% |
| ! | TGATGATGACTATCCTGATT+TGG | - | chr1.2:42287464-42287483 | None:intergenic | 35.0% |
| !! | ATTGTTGTACATGGTGGATT+TGG | - | chr1.2:42289312-42289331 | None:intergenic | 35.0% |
| !! | GTTGTTCATCAATTTGTTGC+TGG | + | chr1.2:42289492-42289511 | MS.gene39196:intron | 35.0% |
| !! | TTGGTAGGTTTTATCAAGCA+TGG | + | chr1.2:42285399-42285418 | MS.gene39196:intron | 35.0% |
| !!! | ATCCCGCTATAGCATTTTTT+GGG | - | chr1.2:42288231-42288250 | None:intergenic | 35.0% |
| !!! | TATCCCGCTATAGCATTTTT+TGG | - | chr1.2:42288232-42288251 | None:intergenic | 35.0% |
| AACTAATCCTAACTGAGCTC+AGG | - | chr1.2:42287395-42287414 | None:intergenic | 40.0% | |
| AATGAAGACAGTGAAGACAC+AGG | + | chr1.2:42290129-42290148 | MS.gene39196:CDS | 40.0% | |
| ACAATGTATCCTTACTCTGG+TGG | - | chr1.2:42288027-42288046 | None:intergenic | 40.0% | |
| ACTTCAATTCCACTCACAAC+CGG | + | chr1.2:42287882-42287901 | MS.gene39196:intron | 40.0% | |
| AGAGATCTTGAAGCTAAGCT+AGG | + | chr1.2:42290054-42290073 | MS.gene39196:CDS | 40.0% | |
| AGGCTGTGGCATATATATTG+TGG | + | chr1.2:42289634-42289653 | MS.gene39196:intron | 40.0% | |
| ATGCAACATGCAATGACCTA+CGG | + | chr1.2:42289074-42289093 | MS.gene39196:intron | 40.0% | |
| CCATCCGCTATTAACTACTA+TGG | - | chr1.2:42288191-42288210 | None:intergenic | 40.0% | |
| CCCACCATAGTAGTTAATAG+CGG | + | chr1.2:42288184-42288203 | MS.gene39196:intron | 40.0% | |
| CCGCTATTAACTACTATGGT+GGG | - | chr1.2:42288187-42288206 | None:intergenic | 40.0% | |
| CCGTATCATGCAAATCACAA+TGG | - | chr1.2:42285495-42285514 | None:intergenic | 40.0% | |
| CGACCCAAAAAATGCTATAG+CGG | + | chr1.2:42288225-42288244 | MS.gene39196:intron | 40.0% | |
| GAAAGGAGATATCCTTACTC+TGG | - | chr1.2:42288092-42288111 | None:intergenic | 40.0% | |
| GACAACCAACAGCATAGAAA+GGG | - | chr1.2:42286179-42286198 | None:intergenic | 40.0% | |
| GACCCAAAAAATGCTATAGC+GGG | + | chr1.2:42288226-42288245 | MS.gene39196:intron | 40.0% | |
| GAGACTGTTATCTTGGATGA+TGG | + | chr1.2:42285670-42285689 | MS.gene39196:CDS | 40.0% | |
| GAGATCTTGAAGCTAAGCTA+GGG | + | chr1.2:42290055-42290074 | MS.gene39196:CDS | 40.0% | |
| GATTTGATCAGGCTTCAATG+GGG | - | chr1.2:42289234-42289253 | None:intergenic | 40.0% | |
| GCAAGAAGGGGTTAAAGTAA+AGG | + | chr1.2:42289050-42289069 | MS.gene39196:intron | 40.0% | |
| GGAGAAAGACATAATTGGAG+AGG | + | chr1.2:42288908-42288927 | MS.gene39196:intron | 40.0% | |
| GTAAGCAGAAAGATGTTGGA+TGG | - | chr1.2:42286532-42286551 | None:intergenic | 40.0% | |
| GTCTTCACTGTCTTCATTCT+TGG | - | chr1.2:42290127-42290146 | None:intergenic | 40.0% | |
| GTGATGGCTAATTCAAGGTT+GGG | - | chr1.2:42287708-42287727 | None:intergenic | 40.0% | |
| GTTCAGGAGATGGAAATGAA+TGG | + | chr1.2:42285835-42285854 | MS.gene39196:CDS | 40.0% | |
| TACGGAAGTAGTTCACAAGT+TGG | + | chr1.2:42285510-42285529 | MS.gene39196:CDS | 40.0% | |
| TAGTGACTAAGACCTCTTGT+GGG | + | chr1.2:42287285-42287304 | MS.gene39196:intron | 40.0% | |
| TCAACCCATTCATCTCAGAA+CGG | + | chr1.2:42287639-42287658 | MS.gene39196:intron | 40.0% | |
| TCAAGGTTGGGCAAAAAAGA+AGG | - | chr1.2:42287696-42287715 | None:intergenic | 40.0% | |
| TCCGCTATTAACTACTATGG+TGG | - | chr1.2:42288188-42288207 | None:intergenic | 40.0% | |
| TCTTCGATTAAGATCTCCAC+CGG | - | chr1.2:42286298-42286317 | None:intergenic | 40.0% | |
| TGAGTACTTGATTGAAGCAG+AGG | - | chr1.2:42289766-42289785 | None:intergenic | 40.0% | |
| TGTGATGGCTAATTCAAGGT+TGG | - | chr1.2:42287709-42287728 | None:intergenic | 40.0% | |
| TGTTGCTGAGACTGTTATCT+TGG | + | chr1.2:42285663-42285682 | MS.gene39196:CDS | 40.0% | |
| TTACAGAGTCTATGCCTCTT+CGG | - | chr1.2:42287356-42287375 | None:intergenic | 40.0% | |
| TTAGTGACTAAGACCTCTTG+TGG | + | chr1.2:42287284-42287303 | MS.gene39196:intron | 40.0% | |
| TTGCAGAGAAAAAGGAAGGA+AGG | - | chr1.2:42285000-42285019 | None:intergenic | 40.0% | |
| TTTAGACACTAATGAGGCTG+TGG | + | chr1.2:42289620-42289639 | MS.gene39196:intron | 40.0% | |
| ! | AAAAAAGGTACGGGTACGTT+AGG | + | chr1.2:42286684-42286703 | MS.gene39196:intron | 40.0% |
| ! | CCATAGTAGTTAATAGCGGA+TGG | + | chr1.2:42288188-42288207 | MS.gene39196:intron | 40.0% |
| ! | TACGGGTACGTTTTGCAAAT+TGG | + | chr1.2:42287198-42287217 | MS.gene39196:intron | 40.0% |
| ! | TGTTATCTTGGATGATGGTG+CGG | + | chr1.2:42285675-42285694 | MS.gene39196:CDS | 40.0% |
| ! | TTCTCATTTTCAATCCTCGC+AGG | - | chr1.2:42285454-42285473 | None:intergenic | 40.0% |
| !! | AAGATCCGTTCTGAGATGAA+TGG | - | chr1.2:42287647-42287666 | None:intergenic | 40.0% |
| !! | AGATCCGTTCTGAGATGAAT+GGG | - | chr1.2:42287646-42287665 | None:intergenic | 40.0% |
| !! | AGTGTACAGATAGCCTTATG+AGG | + | chr1.2:42286100-42286119 | MS.gene39196:CDS | 40.0% |
| !! | ATTTGACAACCTCTGAAGCA+CGG | - | chr1.2:42287229-42287248 | None:intergenic | 40.0% |
| !! | GCTTGTGTTGATAACACAAC+TGG | + | chr1.2:42285562-42285581 | MS.gene39196:CDS | 40.0% |
| !! | TAGTAGTTAATAGCGGATGG+CGG | + | chr1.2:42288191-42288210 | MS.gene39196:intron | 40.0% |
| !! | TAGTGTTGTTGGTGACAGTT+TGG | - | chr1.2:42287550-42287569 | None:intergenic | 40.0% |
| !! | TCTTCGGATTCCGTTTTGAA+CGG | + | chr1.2:42285094-42285113 | MS.gene39196:intron | 40.0% |
| !! | TGAATGGGTTGAGAATGTAG+AGG | - | chr1.2:42287631-42287650 | None:intergenic | 40.0% |
| !! | TGACTATCCTGATTTGGGAT+TGG | - | chr1.2:42287458-42287477 | None:intergenic | 40.0% |
| AACCTGGTATGGTTACGGTA+TGG | - | chr1.2:42287108-42287127 | None:intergenic | 45.0% | |
| AACTGCCCTTTCTATGCTGT+TGG | + | chr1.2:42286171-42286190 | MS.gene39196:CDS | 45.0% | |
| ACCAACAACACTAACACCAG+GGG | + | chr1.2:42287557-42287576 | MS.gene39196:intron | 45.0% | |
| ACTATATGTCCAGCTTTGCC+AGG | - | chr1.2:42287333-42287352 | None:intergenic | 45.0% | |
| AGGAGATATCCTTACTCTGG+TGG | - | chr1.2:42288089-42288108 | None:intergenic | 45.0% | |
| AGTGACTAAGACCTCTTGTG+GGG | + | chr1.2:42287286-42287305 | MS.gene39196:intron | 45.0% | |
| AGTTAATAGCGGCGCTATAG+CGG | - | chr1.2:42288824-42288843 | None:intergenic | 45.0% | |
| AGTTGTCAACTGTGTTGCAC+GGG | + | chr1.2:42286626-42286645 | MS.gene39196:intron | 45.0% | |
| ATAATGAGGGATGCAATGCG+AGG | + | chr1.2:42286010-42286029 | MS.gene39196:CDS | 45.0% | |
| ATCGGCTATTGCGCAATGTA+TGG | + | chr1.2:42286200-42286219 | MS.gene39196:CDS | 45.0% | |
| ATCTGTGACCTGCGATAATG+AGG | + | chr1.2:42285996-42286015 | MS.gene39196:CDS | 45.0% | |
| ATGCAGATCCAGAATTGGAG+TGG | - | chr1.2:42287942-42287961 | None:intergenic | 45.0% | |
| ATTGCATCCCTCATTATCGC+AGG | - | chr1.2:42286007-42286026 | None:intergenic | 45.0% | |
| CACCAACAACACTAACACCA+GGG | + | chr1.2:42287556-42287575 | MS.gene39196:intron | 45.0% | |
| CGACAACCAACAGCATAGAA+AGG | - | chr1.2:42286180-42286199 | None:intergenic | 45.0% | |
| GAGGCATAGACTCTGTAAGA+CGG | + | chr1.2:42287358-42287377 | MS.gene39196:intron | 45.0% | |
| GAGTTGTCAACTGTGTTGCA+CGG | + | chr1.2:42286625-42286644 | MS.gene39196:intron | 45.0% | |
| GCGCTGTAGAGAATGAAAGA+AGG | + | chr1.2:42288578-42288597 | MS.gene39196:intron | 45.0% | |
| GCTATTGCGCAATGTATGGT+TGG | + | chr1.2:42286204-42286223 | MS.gene39196:CDS | 45.0% | |
| GGACCCAGAGTAGTTAATAG+CGG | - | chr1.2:42288835-42288854 | None:intergenic | 45.0% | |
| GGGCAAAAAAGAAGGAAGCT+AGG | - | chr1.2:42287688-42287707 | None:intergenic | 45.0% | |
| GTTTAGCGCGGTTCATTTGA+AGG | + | chr1.2:42286032-42286051 | MS.gene39196:CDS | 45.0% | |
| TATCTCATAACGCTACGCCA+TGG | + | chr1.2:42288758-42288777 | MS.gene39196:intron | 45.0% | |
| TATTGAGTCAGGTTTCGGGA+TGG | + | chr1.2:42285773-42285792 | MS.gene39196:CDS | 45.0% | |
| TCACCAACAACACTAACACC+AGG | + | chr1.2:42287555-42287574 | MS.gene39196:intron | 45.0% | |
| TCTGTACACTTCTGCTCACA+TGG | - | chr1.2:42286090-42286109 | None:intergenic | 45.0% | |
| TCTGTGACCTGCGATAATGA+GGG | + | chr1.2:42285997-42286016 | MS.gene39196:CDS | 45.0% | |
| TGCTGGATTGACATGCATTC+TGG | + | chr1.2:42289509-42289528 | MS.gene39196:intron | 45.0% | |
| TGTCCATATCACGCCTCATA+AGG | - | chr1.2:42286116-42286135 | None:intergenic | 45.0% | |
| TTATGAGGCGTGATATGGAC+AGG | + | chr1.2:42286115-42286134 | MS.gene39196:CDS | 45.0% | |
| ! | CTATGCTGTTGGTTGTCGAT+CGG | + | chr1.2:42286182-42286201 | MS.gene39196:CDS | 45.0% |
| ! | GTTGGCTCAAATGTTTCTGC+CGG | + | chr1.2:42285528-42285547 | MS.gene39196:CDS | 45.0% |
| ! | TTGGCTCAAATGTTTCTGCC+GGG | + | chr1.2:42285529-42285548 | MS.gene39196:CDS | 45.0% |
| !! | CTTGCTTAAAGGCATCCACA+AGG | + | chr1.2:42286266-42286285 | MS.gene39196:CDS | 45.0% |
| !! | GCATTCTGGAGTTCATACAC+TGG | + | chr1.2:42289523-42289542 | MS.gene39196:intron | 45.0% |
| !! | TAGCCTTATGAGGCGTGATA+TGG | + | chr1.2:42286110-42286129 | MS.gene39196:CDS | 45.0% |
| !! | TTTGACAACCTCTGAAGCAC+GGG | - | chr1.2:42287228-42287247 | None:intergenic | 45.0% |
| !! | GTTTAAAAAAAAAAAAAAAT+TGG | + | chr1.2:42287125-42287144 | MS.gene39196:intron | 5.0% |
| !! | TAAAAAAAAATAATTAATGA+TGG | - | chr1.2:42288860-42288879 | None:intergenic | 5.0% |
| !!! | TTTTTATTTATAAAATTTGT+TGG | + | chr1.2:42285380-42285399 | MS.gene39196:intron | 5.0% |
| !!! | TTTTTTAATTTAAAATAACA+TGG | + | chr1.2:42286717-42286736 | MS.gene39196:intron | 5.0% |
| AAACCATCCGCAACTGAACC+AGG | - | chr1.2:42285598-42285617 | None:intergenic | 50.0% | |
| ACACAAGCAGAAGCTAGACC+CGG | - | chr1.2:42285550-42285569 | None:intergenic | 50.0% | |
| ACTTGAGCCTGAGCTCAGTT+AGG | + | chr1.2:42287385-42287404 | MS.gene39196:intron | 50.0% | |
| AGACACAGGCACGGAAACAA+AGG | + | chr1.2:42290143-42290162 | MS.gene39196:CDS | 50.0% | |
| AGACAGTGAAGACACAGGCA+CGG | + | chr1.2:42290134-42290153 | MS.gene39196:CDS | 50.0% | |
| AGCGCCGCTATTAACTACTC+TGG | + | chr1.2:42288828-42288847 | MS.gene39196:intron | 50.0% | |
| AGGCGAAAGATCCACGTCAA+CGG | - | chr1.2:42285434-42285453 | None:intergenic | 50.0% | |
| AGTTGCGGATGGTTTGAGGA+AGG | + | chr1.2:42285603-42285622 | MS.gene39196:CDS | 50.0% | |
| ATGCAATGCGAGGTTTAGCG+CGG | + | chr1.2:42286020-42286039 | MS.gene39196:CDS | 50.0% | |
| ATGTGGGTCCTACCATTGAG+TGG | + | chr1.2:42288159-42288178 | MS.gene39196:intron | 50.0% | |
| CAACACACCTGGTTCAGTTG+CGG | + | chr1.2:42285588-42285607 | MS.gene39196:CDS | 50.0% | |
| CACCATACCGTAACCATACC+AGG | + | chr1.2:42287103-42287122 | MS.gene39196:intron | 50.0% | |
| CACGTGAACCACTCCAATTC+TGG | + | chr1.2:42287931-42287950 | MS.gene39196:intron | 50.0% | |
| CGCCATGGCTTATTGCATAG+CGG | + | chr1.2:42288773-42288792 | MS.gene39196:intron | 50.0% | |
| CTGGTATGGTTACGGTATGG+TGG | - | chr1.2:42287105-42287124 | None:intergenic | 50.0% | |
| GAAAGATCCACGTCAACGGT+TGG | - | chr1.2:42285430-42285449 | None:intergenic | 50.0% | |
| GAAATAGCGGTCATAGCGCT+AGG | - | chr1.2:42288258-42288277 | None:intergenic | 50.0% | |
| GACACAGGCACGGAAACAAA+GGG | + | chr1.2:42290144-42290163 | MS.gene39196:CDS | 50.0% | |
| GACCGCTATGCAATAAGCCA+TGG | - | chr1.2:42288778-42288797 | None:intergenic | 50.0% | |
| GCGCCGCTATTAACTACTCT+GGG | + | chr1.2:42288829-42288848 | MS.gene39196:intron | 50.0% | |
| GCTGGACATATAGTCCGAAG+AGG | + | chr1.2:42287339-42287358 | MS.gene39196:intron | 50.0% | |
| GCTTCAATGGGGTCGATAGA+CGG | - | chr1.2:42289223-42289242 | None:intergenic | 50.0% | |
| GGCGTAGCGTTATGAGATAG+CGG | - | chr1.2:42288757-42288776 | None:intergenic | 50.0% | |
| GGGCAGTTCACAAGCTTCAT+CGG | - | chr1.2:42286159-42286178 | None:intergenic | 50.0% | |
| GGTCAAATTCCTGGCAAAGC+TGG | + | chr1.2:42287321-42287340 | MS.gene39196:intron | 50.0% | |
| GTAGTTCATCCGGTTGTGAG+TGG | - | chr1.2:42287894-42287913 | None:intergenic | 50.0% | |
| GTATGGTTACGGTATGGTGG+TGG | - | chr1.2:42287102-42287121 | None:intergenic | 50.0% | |
| GTTCAGTTGCGGATGGTTTG+AGG | + | chr1.2:42285599-42285618 | MS.gene39196:CDS | 50.0% | |
| TAACTGAGCTCAGGCTCAAG+TGG | - | chr1.2:42287386-42287405 | None:intergenic | 50.0% | |
| TAAGACCTCTTGTGGGGATG+TGG | + | chr1.2:42287292-42287311 | MS.gene39196:intron | 50.0% | |
| TACAGCGCCTTTCATCTCCT+TGG | - | chr1.2:42288566-42288585 | None:intergenic | 50.0% | |
| TGAAGCTAAGCTAGGGCCTT+TGG | + | chr1.2:42290062-42290081 | MS.gene39196:CDS | 50.0% | |
| TGGCTTATTGCATAGCGGTC+CGG | + | chr1.2:42288778-42288797 | MS.gene39196:intron | 50.0% | |
| TGTACGAGTACCAGTACCTG+CGG | + | chr1.2:42287166-42287185 | MS.gene39196:intron | 50.0% | |
| TGTGGGTCCTACCATTGAGT+GGG | + | chr1.2:42288160-42288179 | MS.gene39196:intron | 50.0% | |
| TTGCAAAACGTACCCGTACC+AGG | - | chr1.2:42287196-42287215 | None:intergenic | 50.0% | |
| ! | ACAACTGGCTTCAACACACC+TGG | + | chr1.2:42285577-42285596 | MS.gene39196:CDS | 50.0% |
| ! | ATCTTGGATGATGGTGCGGA+TGG | + | chr1.2:42285679-42285698 | MS.gene39196:CDS | 50.0% |
| ! | ATGAGATAGCGGCGCTATAG+CGG | - | chr1.2:42288746-42288765 | None:intergenic | 50.0% |
| ! | CAGGGGCATAATGCAAGAAG+GGG | + | chr1.2:42289038-42289057 | MS.gene39196:intron | 50.0% |
| ! | CCAGGGGCATAATGCAAGAA+GGG | + | chr1.2:42289037-42289056 | MS.gene39196:intron | 50.0% |
| ! | TCCAGGGGCATAATGCAAGA+AGG | + | chr1.2:42289036-42289055 | MS.gene39196:intron | 50.0% |
| !! | GTATGGTGGTGGTACTCTCA+GGG | - | chr1.2:42287091-42287110 | None:intergenic | 50.0% |
| !! | TGGAGGGTTGGTCAAATTCC+TGG | + | chr1.2:42287312-42287331 | MS.gene39196:intron | 50.0% |
| ACACCTGGTTCAGTTGCGGA+TGG | + | chr1.2:42285592-42285611 | MS.gene39196:CDS | 55.0% | |
| ACCTCTTGTGGGGATGTGGA+GGG | + | chr1.2:42287296-42287315 | MS.gene39196:intron | 55.0% | |
| ATCCACAAGGATGCATCCGG+TGG | + | chr1.2:42286279-42286298 | MS.gene39196:CDS | 55.0% | |
| CCCTTCTTGCATTATGCCCC+TGG | - | chr1.2:42289040-42289059 | None:intergenic | 55.0% | |
| GACAGGATAAACAGCGCCGT+AGG | - | chr1.2:42289093-42289112 | None:intergenic | 55.0% | |
| GATGTTGGAGAAGATGCCCC+TGG | - | chr1.2:42287576-42287595 | None:intergenic | 55.0% | |
| GCAAGCTGACCACCAGAGTA+AGG | + | chr1.2:42288015-42288034 | MS.gene39196:intron | 55.0% | |
| GGCATCCACAAGGATGCATC+CGG | + | chr1.2:42286276-42286295 | MS.gene39196:CDS | 55.0% | |
| TCAACTGTGTTGCACGGGTG+CGG | + | chr1.2:42286631-42286650 | MS.gene39196:intron | 55.0% | |
| ! | CTATGGTGGGACCCACTCAA+TGG | - | chr1.2:42288174-42288193 | None:intergenic | 55.0% |
| ! | GCCCCTGGTGTTAGTGTTGT+TGG | - | chr1.2:42287561-42287580 | None:intergenic | 55.0% |
| ! | TACCTGCGGAGTACCTGGTA+CGG | + | chr1.2:42287180-42287199 | MS.gene39196:intron | 55.0% |
| ! | TTGGAGTACCCGTGCTTCAG+AGG | + | chr1.2:42287217-42287236 | MS.gene39196:intron | 55.0% |
| ! | TTGGATGATGGTGCGGATGG+TGG | + | chr1.2:42285682-42285701 | MS.gene39196:CDS | 55.0% |
| !! | GGTATGGTGGTGGTACTCTC+AGG | - | chr1.2:42287092-42287111 | None:intergenic | 55.0% |
| ACCAGGTACTCCGCAGGTAC+TGG | - | chr1.2:42287179-42287198 | None:intergenic | 60.0% | |
| ACCCTCCACATCCCCACAAG+AGG | - | chr1.2:42287300-42287319 | None:intergenic | 60.0% | |
| ACGGGTGCGGGTATGGGATA+CGG | + | chr1.2:42286644-42286663 | MS.gene39196:intron | 60.0% | |
| ACGTGGATCTTTCGCCTGCG+AGG | + | chr1.2:42285437-42285456 | MS.gene39196:CDS | 60.0% | |
| CAACTGTGTTGCACGGGTGC+GGG | + | chr1.2:42286632-42286651 | MS.gene39196:intron | 60.0% | |
| CTCCACCGGATGCATCCTTG+TGG | - | chr1.2:42286284-42286303 | None:intergenic | 60.0% | |
| CTTGTGGGGATGTGGAGGGT+TGG | + | chr1.2:42287300-42287319 | MS.gene39196:intron | 60.0% | |
| GACCTCTTGTGGGGATGTGG+AGG | + | chr1.2:42287295-42287314 | MS.gene39196:intron | 60.0% | |
| GGTGGGACCCACTCAATGGT+AGG | - | chr1.2:42288170-42288189 | None:intergenic | 60.0% | |
| TGTTGCACGGGTGCGGGTAT+GGG | + | chr1.2:42286638-42286657 | MS.gene39196:intron | 60.0% | |
| ! | ACCAGTACCTGCGGAGTACC+TGG | + | chr1.2:42287175-42287194 | MS.gene39196:intron | 60.0% |
| ! | ACCTGCGGAGTACCTGGTAC+GGG | + | chr1.2:42287181-42287200 | MS.gene39196:intron | 60.0% |
| ACCCGTACCAGGTACTCCGC+AGG | - | chr1.2:42287185-42287204 | None:intergenic | 65.0% | |
| GTGTTGCACGGGTGCGGGTA+TGG | + | chr1.2:42286637-42286656 | MS.gene39196:intron | 65.0% | |
| !! | GGAAGCGCCAACCGTTGACG+TGG | + | chr1.2:42285420-42285439 | MS.gene39196:CDS | 65.0% |
| ! | TAGCGGATGGCGGCGCGTAG+CGG | + | chr1.2:42288201-42288220 | MS.gene39196:intron | 70.0% |
| GCTATAGCGGCCGCGCGGTG+CGG | - | chr1.2:42288811-42288830 | None:intergenic | 75.0% | |
| ! | CGCGCGGTGCGGTGCGGTAC+CGG | - | chr1.2:42288800-42288819 | None:intergenic | 80.0% |
| ! | CGGTACCGCACCGCACCGCG+CGG | + | chr1.2:42288798-42288817 | MS.gene39196:intron | 80.0% |
| ! | GCGGCGCTATAGCGGCCGCG+CGG | - | chr1.2:42288816-42288835 | None:intergenic | 80.0% |
| ! | AGCGGCCGCGCGGTGCGGTG+CGG | - | chr1.2:42288806-42288825 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 42284980 | 42290236 | 42284980 | ID=MS.gene39196 |
| chr1.2 | mRNA | 42284980 | 42290236 | 42284980 | ID=MS.gene39196.t1;Parent=MS.gene39196 |
| chr1.2 | exon | 42284980 | 42284985 | 42284980 | ID=MS.gene39196.t1.exon1;Parent=MS.gene39196.t1 |
| chr1.2 | CDS | 42284980 | 42284985 | 42284980 | ID=cds.MS.gene39196.t1;Parent=MS.gene39196.t1 |
| chr1.2 | exon | 42285406 | 42286335 | 42285406 | ID=MS.gene39196.t1.exon2;Parent=MS.gene39196.t1 |
| chr1.2 | CDS | 42285406 | 42286335 | 42285406 | ID=cds.MS.gene39196.t1;Parent=MS.gene39196.t1 |
| chr1.2 | exon | 42289994 | 42290236 | 42289994 | ID=MS.gene39196.t1.exon3;Parent=MS.gene39196.t1 |
| chr1.2 | CDS | 42289994 | 42290236 | 42289994 | ID=cds.MS.gene39196.t1;Parent=MS.gene39196.t1 |
| Gene Sequence |
| Protein sequence |
