AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058054


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 76 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATTCTTCCAGTGAGAATT+TGG 0.139421 3.1:-74527128 MS.gene058054:CDS
CTCACTGGAAGAATCGATTT+TGG 0.195831 3.1:+74527135 None:intergenic
GTTCAGATTCTGATCGGTTT+TGG 0.204217 3.1:+74527054 None:intergenic
TGATGGGTATGGTGGGAATG+GGG 0.303136 3.1:-74526894 MS.gene058054:CDS
CAAGCGTGAAATGAGGGATT+TGG 0.308282 3.1:-74526861 MS.gene058054:CDS
TTGATGGGTATGGTGGGAAT+GGG 0.325031 3.1:-74526895 MS.gene058054:CDS
TGCAAACCGAAGAATGGAAT+TGG 0.331294 3.1:+74525855 None:intergenic
GTTGATGGGTATGGTGGGAA+TGG 0.353054 3.1:-74526896 MS.gene058054:CDS
TGGTTTCATGGCTCATCAAA+TGG 0.357089 3.1:-74526957 MS.gene058054:CDS
GATGGGTATGGTGGGAATGG+GGG 0.359851 3.1:-74526893 MS.gene058054:CDS
ACCAACAACGTTGGTGTTAA+CGG 0.363856 3.1:+74527024 None:intergenic
AAATGGTAACCATGGTTTCA+TGG 0.371051 3.1:-74526969 MS.gene058054:CDS
CGTTTGTTGAGAAGTGATTA+TGG 0.379479 3.1:-74527179 None:intergenic
CAGAATCAGCATTTGGTTGA+TGG 0.381258 3.1:-74526911 MS.gene058054:CDS
ATGGGTCAGATGCATGGAAA+TGG 0.381795 3.1:-74526938 MS.gene058054:CDS
TTATGTCTACAGTTGGTGCT+AGG 0.385817 3.1:-74525737 MS.gene058054:intron
TGTGTCTGACATTGATCAAC+AGG 0.401213 3.1:-74526441 MS.gene058054:intron
GGGATCCCAATTCCATTCTT+CGG 0.402516 3.1:-74525861 MS.gene058054:CDS
TGGGGTTCAGAATCAGCATT+TGG 0.410154 3.1:-74526918 MS.gene058054:CDS
ATTTGTGCAATAAATTGTTC+TGG 0.413198 3.1:+74525473 None:intergenic
GGAATTTGTGCCACCTTCAC+TGG 0.418984 3.1:-74526804 MS.gene058054:intron
AACCTGTCTGGAACCATGCT+TGG 0.422116 3.1:-74525705 MS.gene058054:CDS
AGTGTATCATAAGATGGATA+TGG 0.424924 3.1:-74526498 MS.gene058054:CDS
ATGAAACCATGGTTACCATT+TGG 0.426411 3.1:+74526971 None:intergenic
TGGGTCAGATGCATGGAAAT+GGG 0.429882 3.1:-74526937 MS.gene058054:CDS
ACCGTTAACACCAACGTTGT+TGG 0.430956 3.1:-74527025 MS.gene058054:CDS
AGGGCTGCTTTGAACCTGTC+TGG 0.436132 3.1:-74525717 MS.gene058054:CDS
AGAAAAGAGAAGAGATGATT+CGG 0.457909 3.1:-74526475 MS.gene058054:CDS
TTGTTGATTGCCGAGTATGC+GGG 0.466260 3.1:-74525882 MS.gene058054:CDS
TATGTCTACAGTTGGTGCTA+GGG 0.469753 3.1:-74525736 MS.gene058054:intron
TTCGTTGAGTTTACTGATGA+AGG 0.475411 3.1:-74525832 MS.gene058054:intron
CAGCATTTGGTTGATGGGTA+TGG 0.475828 3.1:-74526905 MS.gene058054:CDS
AGAATCAGCATTTGGTTGAT+GGG 0.479989 3.1:-74526910 MS.gene058054:CDS
AACGAATGCAAACCGAAGAA+TGG 0.495857 3.1:+74525849 None:intergenic
GGACAACAGTGTTGTTTCAT+CGG 0.497652 3.1:-74527107 MS.gene058054:CDS
GCAAACCGAAGAATGGAATT+GGG 0.498667 3.1:+74525856 None:intergenic
GGTGCAATAGCAGTCTTTGA+AGG 0.507414 3.1:+74525660 None:intergenic
TTTGAAGGCAGCACTCTCAA+TGG 0.508142 3.1:+74525675 None:intergenic
CTAGGTTACTGAAGAGCAGC+TGG 0.510566 3.1:-74526320 MS.gene058054:intron
GGTTTCATGGCTCATCAAAT+GGG 0.513313 3.1:-74526956 MS.gene058054:CDS
GTTGGTGTTCAGATTCTGAT+CGG 0.518468 3.1:+74527048 None:intergenic
TCTCTTTCTTAACTGCGGCC+AGG 0.521464 3.1:-74526293 MS.gene058054:intron
CAACAAGACAGTGTTCCAAA+TGG 0.534163 3.1:-74526986 MS.gene058054:CDS
CATTTGGTTGATGGGTATGG+TGG 0.535130 3.1:-74526902 MS.gene058054:CDS
AATTGGGATCCCCGCATACT+CGG 0.536460 3.1:+74525872 None:intergenic
CATCAAATGGGTCAGATGCA+TGG 0.537520 3.1:-74526944 MS.gene058054:CDS
AACGTTGGTGTTAACGGTGT+TGG 0.540243 3.1:+74527030 None:intergenic
TTGCACAAATCTCGACAAGA+AGG 0.542950 3.1:-74525460 MS.gene058054:intron
GCGTGAAATGAGGGATTTGG+AGG 0.545654 3.1:-74526858 MS.gene058054:CDS
GCGAAGAGTGTATCATAAGA+TGG 0.548157 3.1:-74526504 MS.gene058054:CDS
GAGTTTCAAGCGTGAAATGA+GGG 0.552128 3.1:-74526867 MS.gene058054:CDS
ACTGTTGTCCAAATTCTCAC+TGG 0.555026 3.1:+74527120 None:intergenic
ATCCAAGCATGGTTCCAGAC+AGG 0.558907 3.1:+74525703 None:intergenic
GTTGTGTTGCAGAGGAAGAA+TGG 0.563277 3.1:-74526542 MS.gene058054:intron
AGAGTTTCAAGCGTGAAATG+AGG 0.568029 3.1:-74526868 MS.gene058054:CDS
GTTGTTGATTGCCGAGTATG+CGG 0.576812 3.1:-74525883 MS.gene058054:CDS
ATGGCGGTAGCTGAGAATGT+TGG 0.580311 3.1:-74527160 MS.gene058054:CDS
CTTTGAATCTATCTGTGGCG+AGG 0.582020 3.1:-74525295 None:intergenic
CACTTCTTTGAATCTATCTG+TGG 0.587202 3.1:-74525300 MS.gene058054:CDS
GTTGTCAAAGCTGAATCCTA+TGG 0.587744 3.1:-74526831 MS.gene058054:CDS
ATTTGGTTGATGGGTATGGT+GGG 0.591826 3.1:-74526901 MS.gene058054:CDS
AAAGCTGAATCCTATGGCTG+AGG 0.594772 3.1:-74526825 MS.gene058054:CDS
TGTTGATTGCCGAGTATGCG+GGG 0.611381 3.1:-74525881 MS.gene058054:CDS
TTTGATGAGCCATGAAACCA+TGG 0.614650 3.1:+74526960 None:intergenic
AAAGAGAAGAGATGATTCGG+AGG 0.615099 3.1:-74526472 MS.gene058054:CDS
AGTGTTCCAAATGGTAACCA+TGG 0.620845 3.1:-74526977 MS.gene058054:CDS
GCGGCTCTCTTTCTTAACTG+CGG 0.622650 3.1:-74526298 MS.gene058054:CDS
GGGTCAGATGCATGGAAATG+GGG 0.623897 3.1:-74526936 MS.gene058054:CDS
TGATAATTAGTAACCAGTGA+AGG 0.626417 3.1:+74526791 None:intergenic
GGCACAAATTCCTCAGCCAT+AGG 0.629252 3.1:+74526815 None:intergenic
CAATGGATAATATCCAAGCA+TGG 0.634411 3.1:+74525692 None:intergenic
TGTTTCATCGGACTCAACTG+AGG 0.647222 3.1:-74527095 MS.gene058054:CDS
TAATTAGTAACCAGTGAAGG+TGG 0.655408 3.1:+74526794 None:intergenic
ATTGATCACACCAACAACGT+TGG 0.675812 3.1:+74527015 None:intergenic
GGTTACTGAAGAGCAGCTGG+CGG 0.706094 3.1:-74526317 MS.gene058054:CDS
TTGTTGAGAAGTGATTATGG+CGG 0.738475 3.1:-74527176 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTGTTTTAATTATTTTT+TGG - chr3.1:74526680-74526699 MS.gene058054:intron 10.0%
!! CAGAAAAGATAAAAAATATC+AGG + chr3.1:74526911-74526930 None:intergenic 20.0%
!!! ATATTTTTCAGTATCTGTTT+TGG - chr3.1:74527069-74527088 MS.gene058054:CDS 20.0%
!!! GAAGCATAAAATTGTTATTA+GGG + chr3.1:74525735-74525754 None:intergenic 20.0%
!!! TGAAGCATAAAATTGTTATT+AGG + chr3.1:74525736-74525755 None:intergenic 20.0%
!!! TTTATGCTTCAGAATAATTT+TGG - chr3.1:74525745-74525764 MS.gene058054:intron 20.0%
! AAACTAAACACAATATCGAA+AGG + chr3.1:74525872-74525891 None:intergenic 25.0%
! AACAGATACTGAAAAATATC+AGG + chr3.1:74527068-74527087 None:intergenic 25.0%
! ACAGATACTGAAAAATATCA+GGG + chr3.1:74527067-74527086 None:intergenic 25.0%
! ATAGTTTCCTTTCTTAATGA+TGG - chr3.1:74526514-74526533 MS.gene058054:CDS 25.0%
! ATTTGTGCAATAAATTGTTC+TGG + chr3.1:74526991-74527010 None:intergenic 25.0%
!!! AAGGATTGTTGTTTTTATGT+TGG - chr3.1:74526115-74526134 MS.gene058054:intron 25.0%
!!! TTGTTTTTATGTTGGAATCT+AGG - chr3.1:74526123-74526142 MS.gene058054:intron 25.0%
AGAAAAGAGAAGAGATGATT+CGG - chr3.1:74525986-74526005 MS.gene058054:intron 30.0%
AGACATAAAACCGTTAATTC+AGG + chr3.1:74526712-74526731 None:intergenic 30.0%
AGTGTATCATAAGATGGATA+TGG - chr3.1:74525963-74525982 MS.gene058054:intron 30.0%
CTAAGAAGAAAAATTACCCT+GGG + chr3.1:74526846-74526865 None:intergenic 30.0%
GACATAAAACCGTTAATTCA+GGG + chr3.1:74526711-74526730 None:intergenic 30.0%
TCTAAGAAGAAAAATTACCC+TGG + chr3.1:74526847-74526866 None:intergenic 30.0%
TGATAATTAGTAACCAGTGA+AGG + chr3.1:74525673-74525692 None:intergenic 30.0%
TTGAGCTAATTAACCATGTA+TGG - chr3.1:74526330-74526349 MS.gene058054:intron 30.0%
TTTGAACTTAGAATCTTGCT+TGG - chr3.1:74527034-74527053 MS.gene058054:CDS 30.0%
! TAATGGACAGATTAACAGAA+GGG - chr3.1:74525801-74525820 MS.gene058054:intron 30.0%
! TCACTGGTTACTAATTATCA+TGG - chr3.1:74525673-74525692 MS.gene058054:CDS 30.0%
!! ATAATGGACAGATTAACAGA+AGG - chr3.1:74525800-74525819 MS.gene058054:intron 30.0%
!!! TTGCACGTGTATTGATTTTA+AGG - chr3.1:74526096-74526115 MS.gene058054:intron 30.0%
AAAATATAGCCGTTTCTACC+TGG + chr3.1:74526189-74526208 None:intergenic 35.0%
AAACACAAACGACAATGCAA+CGG + chr3.1:74526669-74526688 None:intergenic 35.0%
AAATGGTAACCATGGTTTCA+TGG - chr3.1:74525492-74525511 MS.gene058054:CDS 35.0%
AGAATCAGCATTTGGTTGAT+GGG - chr3.1:74525551-74525570 MS.gene058054:intron 35.0%
ATGAAACCATGGTTACCATT+TGG + chr3.1:74525493-74525512 None:intergenic 35.0%
CAATGGATAATATCCAAGCA+TGG + chr3.1:74526772-74526791 None:intergenic 35.0%
CACTTCTTTGAATCTATCTG+TGG - chr3.1:74527161-74527180 MS.gene058054:CDS 35.0%
CTATAACAACACAAACGACA+AGG + chr3.1:74526498-74526517 None:intergenic 35.0%
GAAATACAGCATCGTTAGAA+AGG + chr3.1:74526939-74526958 None:intergenic 35.0%
GCTAATGCTACTGCTAATAA+TGG - chr3.1:74525784-74525803 MS.gene058054:intron 35.0%
GGCAAAAAAGTTGGATTAAC+AGG + chr3.1:74526825-74526844 None:intergenic 35.0%
GTTTCCTTTCTTAATGATGG+TGG - chr3.1:74526517-74526536 MS.gene058054:CDS 35.0%
TAATTAGTAACCAGTGAAGG+TGG + chr3.1:74525670-74525689 None:intergenic 35.0%
TTCGTTGAGTTTACTGATGA+AGG - chr3.1:74526629-74526648 MS.gene058054:intron 35.0%
TTCTTAGAGATTCCTATTGC+AGG - chr3.1:74526859-74526878 MS.gene058054:CDS 35.0%
! TGTTTTGTAGAACCTGCAAT+AGG + chr3.1:74526874-74526893 None:intergenic 35.0%
!! AACGGTTTTATGTCTACAGT+TGG - chr3.1:74526717-74526736 MS.gene058054:intron 35.0%
!! TTCAGATTCTGATCGGTTTT+GGG + chr3.1:74525409-74525428 None:intergenic 35.0%
!!! TAATCCAACTTTTTTGCCCA+GGG - chr3.1:74526827-74526846 MS.gene058054:CDS 35.0%
!!! TTAATCCAACTTTTTTGCCC+AGG - chr3.1:74526826-74526845 MS.gene058054:CDS 35.0%
AACGAATGCAAACCGAAGAA+TGG + chr3.1:74526615-74526634 None:intergenic 40.0%
AACTACTCTTACGTGAGCAT+AGG - chr3.1:74526556-74526575 MS.gene058054:intron 40.0%
ACAAATCTCGACAAGAAGGT+AGG - chr3.1:74527005-74527024 MS.gene058054:CDS 40.0%
ACTGTTGTCCAAATTCTCAC+TGG + chr3.1:74525344-74525363 None:intergenic 40.0%
AGAGTTTCAAGCGTGAAATG+AGG - chr3.1:74525593-74525612 MS.gene058054:intron 40.0%
AGTGTTCCAAATGGTAACCA+TGG - chr3.1:74525484-74525503 MS.gene058054:CDS 40.0%
ATGTGATAGAGCTCCATACA+TGG + chr3.1:74526346-74526365 None:intergenic 40.0%
ATTACCCTGGGCAAAAAAGT+TGG + chr3.1:74526834-74526853 None:intergenic 40.0%
ATTGATCACACCAACAACGT+TGG + chr3.1:74525449-74525468 None:intergenic 40.0%
ATTGATTGGAGCTCCATACA+TGG + chr3.1:74526440-74526459 None:intergenic 40.0%
CAACAAGACAGTGTTCCAAA+TGG - chr3.1:74525475-74525494 MS.gene058054:CDS 40.0%
CAACACAAACGACAAGGTAA+CGG + chr3.1:74526492-74526511 None:intergenic 40.0%
CAGAATCAGCATTTGGTTGA+TGG - chr3.1:74525550-74525569 MS.gene058054:intron 40.0%
CGATTCTTCCAGTGAGAATT+TGG - chr3.1:74525333-74525352 MS.gene058054:intron 40.0%
GAACTTAGAATCTTGCTTGG+AGG - chr3.1:74527037-74527056 MS.gene058054:CDS 40.0%
GAGTTTCAAGCGTGAAATGA+GGG - chr3.1:74525594-74525613 MS.gene058054:intron 40.0%
GCAAACCGAAGAATGGAATT+GGG + chr3.1:74526608-74526627 None:intergenic 40.0%
GGTTTCATGGCTCATCAAAT+GGG - chr3.1:74525505-74525524 MS.gene058054:intron 40.0%
GTTGTCAAAGCTGAATCCTA+TGG - chr3.1:74525630-74525649 MS.gene058054:intron 40.0%
TAACGGAACACGTGTATCTA+AGG + chr3.1:74526475-74526494 None:intergenic 40.0%
TCTGACATTGATCAACAGGT+AGG - chr3.1:74526024-74526043 MS.gene058054:intron 40.0%
TGATTGATGTTGTGTTGCAG+AGG - chr3.1:74525911-74525930 MS.gene058054:intron 40.0%
TGCAAACCGAAGAATGGAAT+TGG + chr3.1:74526609-74526628 None:intergenic 40.0%
TGGTCCACCATCATTAAGAA+AGG + chr3.1:74526524-74526543 None:intergenic 40.0%
TGGTTTCATGGCTCATCAAA+TGG - chr3.1:74525504-74525523 MS.gene058054:intron 40.0%
TGTGTCTGACATTGATCAAC+AGG - chr3.1:74526020-74526039 MS.gene058054:intron 40.0%
TTGCACAAATCTCGACAAGA+AGG - chr3.1:74527001-74527020 MS.gene058054:CDS 40.0%
TTGGCGTTTCCCTGAATTAA+CGG - chr3.1:74526699-74526718 MS.gene058054:intron 40.0%
TTTGATGAGCCATGAAACCA+TGG + chr3.1:74525504-74525523 None:intergenic 40.0%
! AAAGAGAAGAGATGATTCGG+AGG - chr3.1:74525989-74526008 MS.gene058054:intron 40.0%
! GAGTAGTTGACTTAGTAACG+TGG + chr3.1:74526544-74526563 None:intergenic 40.0%
! GCGAAGAGTGTATCATAAGA+TGG - chr3.1:74525957-74525976 MS.gene058054:intron 40.0%
! GTTGGTGTTCAGATTCTGAT+CGG + chr3.1:74525416-74525435 None:intergenic 40.0%
! TTATGTCTACAGTTGGTGCT+AGG - chr3.1:74526724-74526743 MS.gene058054:intron 40.0%
!! ACCAACAACGTTGGTGTTAA+CGG + chr3.1:74525440-74525459 None:intergenic 40.0%
!! ATTTGGTTGATGGGTATGGT+GGG - chr3.1:74525560-74525579 MS.gene058054:intron 40.0%
!! CTCACTGGAAGAATCGATTT+TGG + chr3.1:74525329-74525348 None:intergenic 40.0%
!! GGACAACAGTGTTGTTTCAT+CGG - chr3.1:74525354-74525373 MS.gene058054:intron 40.0%
!! GTTCAGATTCTGATCGGTTT+TGG + chr3.1:74525410-74525429 None:intergenic 40.0%
!! TATGTCTACAGTTGGTGCTA+GGG - chr3.1:74526725-74526744 MS.gene058054:intron 40.0%
!!! ATTCTGATCGGTTTTGGGTT+TGG + chr3.1:74525404-74525423 None:intergenic 40.0%
AAAGCTGAATCCTATGGCTG+AGG - chr3.1:74525636-74525655 MS.gene058054:CDS 45.0%
ACCGTTAACACCAACGTTGT+TGG - chr3.1:74525436-74525455 MS.gene058054:intron 45.0%
ATCTCGACAAGAAGGTAGGT+TGG - chr3.1:74527009-74527028 MS.gene058054:CDS 45.0%
ATGGGTCAGATGCATGGAAA+TGG - chr3.1:74525523-74525542 MS.gene058054:intron 45.0%
CAAGCGTGAAATGAGGGATT+TGG - chr3.1:74525600-74525619 MS.gene058054:intron 45.0%
CATCAAATGGGTCAGATGCA+TGG - chr3.1:74525517-74525536 MS.gene058054:intron 45.0%
GGCTGCGTCTTACTATTGAT+TGG + chr3.1:74526454-74526473 None:intergenic 45.0%
GGGATCCCAATTCCATTCTT+CGG - chr3.1:74526600-74526619 MS.gene058054:intron 45.0%
GGTGCAATAGCAGTCTTTGA+AGG + chr3.1:74526804-74526823 None:intergenic 45.0%
GTTGTGTTGCAGAGGAAGAA+TGG - chr3.1:74525919-74525938 MS.gene058054:intron 45.0%
TATCATGGCTACTTAGCTGC+TGG - chr3.1:74525688-74525707 MS.gene058054:CDS 45.0%
TCTCGACAAGAAGGTAGGTT+GGG - chr3.1:74527010-74527029 MS.gene058054:CDS 45.0%
TGGGGTTCAGAATCAGCATT+TGG - chr3.1:74525543-74525562 MS.gene058054:intron 45.0%
TGGGTCAGATGCATGGAAAT+GGG - chr3.1:74525524-74525543 MS.gene058054:intron 45.0%
TGTTTCATCGGACTCAACTG+AGG - chr3.1:74525366-74525385 MS.gene058054:intron 45.0%
TTTGAAGGCAGCACTCTCAA+TGG + chr3.1:74526789-74526808 None:intergenic 45.0%
! GTTGTTGATTGCCGAGTATG+CGG - chr3.1:74526578-74526597 MS.gene058054:intron 45.0%
! TTGATGGGTATGGTGGGAAT+GGG - chr3.1:74525566-74525585 MS.gene058054:intron 45.0%
! TTGTTGATTGCCGAGTATGC+GGG - chr3.1:74526579-74526598 MS.gene058054:intron 45.0%
!! AACGTTGGTGTTAACGGTGT+TGG + chr3.1:74525434-74525453 None:intergenic 45.0%
!! CAGCATTTGGTTGATGGGTA+TGG - chr3.1:74525556-74525575 MS.gene058054:intron 45.0%
!! CATTTGGTTGATGGGTATGG+TGG - chr3.1:74525559-74525578 MS.gene058054:intron 45.0%
AATTGGGATCCCCGCATACT+CGG + chr3.1:74526592-74526611 None:intergenic 50.0%
ATCCAAGCATGGTTCCAGAC+AGG + chr3.1:74526761-74526780 None:intergenic 50.0%
ATGGCGGTAGCTGAGAATGT+TGG - chr3.1:74525301-74525320 MS.gene058054:CDS 50.0%
CTAGGTTACTGAAGAGCAGC+TGG - chr3.1:74526141-74526160 MS.gene058054:intron 50.0%
GCGGCTCTCTTTCTTAACTG+CGG - chr3.1:74526163-74526182 MS.gene058054:intron 50.0%
GCGTGAAATGAGGGATTTGG+AGG - chr3.1:74525603-74525622 MS.gene058054:intron 50.0%
GGAATTTGTGCCACCTTCAC+TGG - chr3.1:74525657-74525676 MS.gene058054:CDS 50.0%
GGCACAAATTCCTCAGCCAT+AGG + chr3.1:74525649-74525668 None:intergenic 50.0%
GGGTAACCAAACCCAGCATT+AGG + chr3.1:74525715-74525734 None:intergenic 50.0%
GGGTCAGATGCATGGAAATG+GGG - chr3.1:74525525-74525544 MS.gene058054:intron 50.0%
TAACTGCGGCCAGGTAGAAA+CGG - chr3.1:74526177-74526196 MS.gene058054:intron 50.0%
TAGCTGCTGGACCTAATGCT+GGG - chr3.1:74525701-74525720 MS.gene058054:CDS 50.0%
TCTCTTTCTTAACTGCGGCC+AGG - chr3.1:74526168-74526187 MS.gene058054:intron 50.0%
TTAGCTGCTGGACCTAATGC+TGG - chr3.1:74525700-74525719 MS.gene058054:CDS 50.0%
! AACCTGTCTGGAACCATGCT+TGG - chr3.1:74526756-74526775 MS.gene058054:intron 50.0%
! GTTGATGGGTATGGTGGGAA+TGG - chr3.1:74525565-74525584 MS.gene058054:intron 50.0%
! TGATGGGTATGGTGGGAATG+GGG - chr3.1:74525567-74525586 MS.gene058054:intron 50.0%
! TGTTGATTGCCGAGTATGCG+GGG - chr3.1:74526580-74526599 MS.gene058054:intron 50.0%
GCTGGACCTAATGCTGGGTT+TGG - chr3.1:74525706-74525725 MS.gene058054:CDS 55.0%
GGTTACTGAAGAGCAGCTGG+CGG - chr3.1:74526144-74526163 MS.gene058054:intron 55.0%
! AGGGCTGCTTTGAACCTGTC+TGG - chr3.1:74526744-74526763 MS.gene058054:intron 55.0%
! GATGGGTATGGTGGGAATGG+GGG - chr3.1:74525568-74525587 MS.gene058054:intron 55.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 74525296 74527187 74525296 ID=MS.gene058054
chr3.1 mRNA 74525296 74527187 74525296 ID=MS.gene058054.t1;Parent=MS.gene058054
chr3.1 exon 74526805 74527187 74526805 ID=MS.gene058054.t1.exon1;Parent=MS.gene058054.t1
chr3.1 CDS 74526805 74527187 74526805 ID=cds.MS.gene058054.t1;Parent=MS.gene058054.t1
chr3.1 exon 74526442 74526552 74526442 ID=MS.gene058054.t1.exon2;Parent=MS.gene058054.t1
chr3.1 CDS 74526442 74526552 74526442 ID=cds.MS.gene058054.t1;Parent=MS.gene058054.t1
chr3.1 exon 74526294 74526338 74526294 ID=MS.gene058054.t1.exon3;Parent=MS.gene058054.t1
chr3.1 CDS 74526294 74526338 74526294 ID=cds.MS.gene058054.t1;Parent=MS.gene058054.t1
chr3.1 exon 74525833 74525905 74525833 ID=MS.gene058054.t1.exon4;Parent=MS.gene058054.t1
chr3.1 CDS 74525833 74525905 74525833 ID=cds.MS.gene058054.t1;Parent=MS.gene058054.t1
chr3.1 exon 74525635 74525747 74525635 ID=MS.gene058054.t1.exon5;Parent=MS.gene058054.t1
chr3.1 CDS 74525635 74525747 74525635 ID=cds.MS.gene058054.t1;Parent=MS.gene058054.t1
chr3.1 exon 74525461 74525520 74525461 ID=MS.gene058054.t1.exon6;Parent=MS.gene058054.t1
chr3.1 CDS 74525461 74525520 74525461 ID=cds.MS.gene058054.t1;Parent=MS.gene058054.t1
chr3.1 exon 74525296 74525343 74525296 ID=MS.gene058054.t1.exon7;Parent=MS.gene058054.t1
chr3.1 CDS 74525296 74525343 74525296 ID=cds.MS.gene058054.t1;Parent=MS.gene058054.t1
Gene Sequence

>MS.gene058054

TGATTATGGCGGTAGCTGAGAATGTTGGAACCAAAATCGATTCTTCCAGTGAGAATTTGGACAACAGTGTTGTTTCATCGGACTCAACTGAGGTTGTTGAGAAATCCAAACCCAAAACCGATCAGAATCTGAACACCAACACCGTTAACACCAACGTTGTTGGTGTGATCAATCATCAACAACAAGACAGTGTTCCAAATGGTAACCATGGTTTCATGGCTCATCAAATGGGTCAGATGCATGGAAATGGGGTTCAGAATCAGCATTTGGTTGATGGGTATGGTGGGAATGGGGGTGAGAGTTTCAAGCGTGAAATGAGGGATTTGGAGGAGTTGTTGTCAAAGCTGAATCCTATGGCTGAGGAATTTGTGCCACCTTCACTGGTTACTAATTATCATGGCTACTTAGCTGCTGGACCTAATGCTGGGTTTGGTTACCCTAATAACAATTTTATGCTTCAGAATAATTTTGGAAATGCTAATGCTAATGCTAATGCTACTGCTAATAATGGACAGATTAACAGAAGGGTATGAATATTTTGTTTGATCTCTTTTTTATTCATACGATTTTTTACCTTTCGATATTGTGTTTAGTTTGTGTATTAATACAATATATTGATTGATGTTGTGTTGCAGAGGAAGAATGGCTATAATAATGCGAAGCGAAGAGTGTATCATAAGATGGATATGGAGAAAAGAGAAGAGATGATTCGGAGGACTGTTTATGTGTCTGACATTGATCAACAGGTAGGAATTTTAGCTGTCTTGTTGAATCTATCATTTCAGCTTGCTTGCAATGTTTTGCACGTGTATTGATTTTAAGGATTGTTGTTTTTATGTTGGAATCTAGGTTACTGAAGAGCAGCTGGCGGCTCTCTTTCTTAACTGCGGCCAGGTAGAAACGGCTATATTTTGTATATGATGTGTATTATTTTTCTTTATAGAAATGATATGATGTACAGTAATAACTATCACTTGAAAAAGCAACGTAATGCAACGTATCTGTTTTGAACGAATCGCGACAAAGTTGTACTTTTGAGCTAATTAACCATGTATGGAGCTCTATCACATGAAAATGTAACGTAATGCAACGTATCTGTTTTGAACGAATCGCGACAAAGTTGTACTTTTGAGCTAATTAACCATGTATGGAGCTCCAATCAATAGTAAGACGCAGCCTTAGATACACGTGTTCCGTTACCTTGTCGTTTGTGTTGTTATAGTTTCCTTTCTTAATGATGGTGGACCACGTTACTAAGTCAACTACTCTTACGTGAGCATAGGTTGTTGATTGCCGAGTATGCGGGGATCCCAATTCCATTCTTCGGTTTGCATTCGTTGAGTTTACTGATGAAGGTGATATCACGTGTTCCGTTGCATTGTCGTTTGTGTTTTAATTATTTTTTGGCGTTTCCCTGAATTAACGGTTTTATGTCTACAGTTGGTGCTAGGGCTGCTTTGAACCTGTCTGGAACCATGCTTGGATATTATCCATTGAGAGTGCTGCCTTCAAAGACTGCTATTGCACCTGTTAATCCAACTTTTTTGCCCAGGGTAATTTTTCTTCTTAGAGATTCCTATTGCAGGTTCTACAAAACAATTTATCAGAGTGTCCTGATATTTTTTATCTTTTCTGTTCTACCTTTCTAACGATGCTGTATTTCTCAGTCTGAAGATGAAAGAGAGATGTGCACCAGAACAATTTATTGCACAAATCTCGACAAGAAGGTAGGTTGGGATTTGAACTTAGAATCTTGCTTGGAGGAACTCCCTGATATTTTTCAGTATCTGTTTTGGAGCAATCGTATCTCGTAATTCTTATTCTTCTTTTCTTGTTATATGCAGCTTACTCAAGCAGATGTCAAGCACTTCTTTGAATCTATCTGTGGCGAG

Protein sequence

>MS.gene058054.t1

ULWRULRMLEPKSILPVRIWTTVLFHRTQLRLLRNPNPKPIRIUTPTPLTPTLLVUSIINNKTVFQMVTMVSWLIKWVRCMEMGFRISIWLMGMVGMGVRVSSVKUGIWRSCCQSUILWLRNLCHLHUGRMAIIMRSEECIIRWIWRKEKRUFGGLFMCLTLINRLLKSSWRLSFLTAARLLIAEYAGIPIPFFGLHSLSLLMKLVLGLLUTCLEPCLDIIHUECCLQRLLLHLLIQLFCPGLKMKERCAPEQFIAQISTRSLLKQMSSTSLNLSVA