AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39292

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39292.t1 MTR_8g010350 96.078 867 31 3 1 865 1 866 0.0 1719
MS.gene39292.t1 MTR_7g070290 77.576 495 101 4 378 865 126 617 0.0 760
MS.gene39292.t1 MTR_7g070290 29.193 483 274 19 139 607 17 445 3.07e-31 130
MS.gene39292.t1 MTR_7g070290 53.425 73 24 2 43 113 3 67 1.67e-12 71.6
MS.gene39292.t1 MTR_7g070300 42.759 290 109 11 26 292 70 325 5.61e-46 168
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39292.t1 AT1G17070 53.515 882 347 14 3 860 1 843 0.0 833
MS.gene39292.t1 AT2G42330 47.795 839 339 12 34 865 6 752 0.0 720
MS.gene39292.t1 AT2G42330 47.795 839 339 12 34 865 6 752 0.0 720
MS.gene39292.t1 AT2G42330 47.795 839 339 12 34 865 6 752 0.0 720

Find 219 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAAGTTACAAAATGGTATT+TGG 0.097454 8.2:-80892109 MS.gene39292:CDS
AAGACCATGTCTCCTCATTT+TGG 0.120770 8.2:+80891689 None:intergenic
CCTGGTTTAGGGTTAGGTTT+TGG 0.151973 8.2:-80893878 MS.gene39292:CDS
CACAACGGTCATCAAATATA+TGG 0.248012 8.2:-80891763 MS.gene39292:CDS
TCCATATATAACATCGTCTT+TGG 0.271281 8.2:+80894084 None:intergenic
TCATTTGCCAAAAGTTCTTT+TGG 0.273610 8.2:+80892069 None:intergenic
TTCAAATTGAGTACTGTTCT+TGG 0.275822 8.2:-80892426 MS.gene39292:CDS
CTCATCAACATTATCCTTAT+CGG 0.278789 8.2:+80893937 None:intergenic
CCCACTGCACTTGATAGTTT+TGG 0.287889 8.2:+80892552 None:intergenic
TCTCTCCTTCTCCCTCTTCA+TGG 0.290858 8.2:+80893709 None:intergenic
TTCCCTTGCTCAATGCTTTA+CGG 0.291345 8.2:-80892940 MS.gene39292:CDS
GAAGAAGATAGGCCTGGTTT+AGG 0.292810 8.2:-80893890 MS.gene39292:CDS
AAGAAGCCGGGCATTGGTTT+AGG 0.293073 8.2:-80893662 MS.gene39292:CDS
TCTGAAACCAATTGAGTATA+AGG 0.301102 8.2:+80892717 None:intergenic
ACTTATTCCAAAAGAACTTT+TGG 0.305783 8.2:-80892076 MS.gene39292:CDS
TTGCCAGCTGTTAGAGTATC+TGG 0.307811 8.2:-80892687 MS.gene39292:CDS
GAAGGTGGCCAATGGGTTAA+TGG 0.309537 8.2:-80894151 MS.gene39292:CDS
AGTATCTCGGGGTCTGGTTT+AGG 0.309623 8.2:-80893848 MS.gene39292:CDS
TTGTGCGTTCTACCAGATTT+AGG 0.311130 8.2:+80891781 None:intergenic
TTTGTAACTTCGTCAAAGTT+AGG 0.313889 8.2:+80892120 None:intergenic
ACCAAAGACGATGTTATATA+TGG 0.321878 8.2:-80894085 MS.gene39292:CDS
GAGGCTTATGCTCGGGATAA+TGG 0.323040 8.2:-80891817 MS.gene39292:CDS
TTCTTCTCTGTCTGCAAAAC+GGG 0.347374 8.2:+80893440 None:intergenic
CTTGAGAAGATGGGTTATAA+AGG 0.348414 8.2:-80893575 MS.gene39292:CDS
AGGAGAAGATAAGCTATATC+AGG 0.352380 8.2:-80891963 MS.gene39292:CDS
TTTGGGTCGGCTAGTATCTC+GGG 0.355857 8.2:-80893860 MS.gene39292:CDS
TGATCAAGATTCTGACTTGC+CGG 0.356856 8.2:+80892258 None:intergenic
ACTTTGACGAAGTTACAAAA+TGG 0.360697 8.2:-80892116 MS.gene39292:CDS
TTACTGTTCAAACCTAAATC+TGG 0.369481 8.2:-80891793 MS.gene39292:CDS
GTCATCACCTTATACTCAAT+TGG 0.369878 8.2:-80892724 MS.gene39292:CDS
AATCTGATAAGAATGATAAT+CGG 0.370596 8.2:-80893781 MS.gene39292:CDS
TATCAAGTGCAGTGGGTACT+TGG 0.373265 8.2:-80892545 MS.gene39292:CDS
TCGAAATCCATCTCATGGTT+TGG 0.376763 8.2:-80892808 MS.gene39292:CDS
CAAGCTGCTGCAAGCATGGC+TGG 0.379886 8.2:-80891883 MS.gene39292:CDS
TGCAAGACAGCCTTCAGCTT+TGG 0.383113 8.2:+80892300 None:intergenic
TTCAGAAGATTTATGATATG+AGG 0.386976 8.2:-80893274 MS.gene39292:CDS
GATAGGCCTGGTTTAGGGTT+AGG 0.390604 8.2:-80893884 MS.gene39292:CDS
GAGAGTCATACAAAGGGAAT+TGG 0.392137 8.2:-80893608 MS.gene39292:CDS
AAGAAGATAGGCCTGGTTTA+GGG 0.393008 8.2:-80893889 MS.gene39292:CDS
TTGGGTTATGAACTGGGCTT+CGG 0.393328 8.2:-80892229 MS.gene39292:CDS
CATCCATGGCTACCCCTGCT+AGG 0.404541 8.2:-80892483 MS.gene39292:CDS
GCCCTCAACTTTGCCTCAAT+AGG 0.405496 8.2:+80893515 None:intergenic
GTGTCAACCATCAGATGAAT+TGG 0.408091 8.2:+80892201 None:intergenic
AGGAGGGAGCTGTGGATGTT+GGG 0.409566 8.2:-80893637 MS.gene39292:CDS
GATCAAGAGATGGAGAATTT+CGG 0.416250 8.2:-80894190 MS.gene39292:CDS
GAAGAGGGAGAAGGAGAGAT+TGG 0.416692 8.2:-80893705 MS.gene39292:CDS
CTTCTTTGCCAAGTGGCTTA+CGG 0.416957 8.2:-80892169 MS.gene39292:CDS
GAAGAAGAAGGGGAAGAAGC+CGG 0.421415 8.2:-80893675 MS.gene39292:CDS
TCAAATCTCTATCAATCTCT+TGG 0.426322 8.2:+80893120 None:intergenic
CCTCCAGCTTGTGCCCTAGC+AGG 0.432848 8.2:+80892469 None:intergenic
TTCGAAGAGGATCCCATCCT+TGG 0.432902 8.2:+80892826 None:intergenic
GGTCATCAAATATATGGGTT+TGG 0.434302 8.2:-80891757 MS.gene39292:CDS
GAAGTTACAAAATGGTATTT+GGG 0.437313 8.2:-80892108 MS.gene39292:CDS
TTGAGAAGATGGGTTATAAA+GGG 0.445982 8.2:-80893574 MS.gene39292:CDS
TCAATTTGAAACGAATTGTC+TGG 0.447524 8.2:+80892439 None:intergenic
ATCTGATAAGAATGATAATC+GGG 0.447576 8.2:-80893780 MS.gene39292:CDS
TCATCAACATTATCCTTATC+GGG 0.448438 8.2:+80893938 None:intergenic
CCCATCATCATGGTAGTCTT+CGG 0.451659 8.2:+80894048 None:intergenic
GGCTATTCCAATTCATCTGA+TGG 0.452495 8.2:-80892208 MS.gene39292:CDS
TGCGTTTGGGAAGATGATTA+AGG 0.455038 8.2:-80893738 MS.gene39292:CDS
CAGGAGGGAGCTGTGGATGT+TGG 0.458207 8.2:-80893638 MS.gene39292:CDS
CTTCTTCTCTGTCTGCAAAA+CGG 0.458538 8.2:+80893439 None:intergenic
CAGTGGAAGGCATTGCTTCA+AGG 0.460014 8.2:-80892774 MS.gene39292:CDS
TTACAAAATGGTATTTGGGC+TGG 0.461685 8.2:-80892104 MS.gene39292:CDS
AGGATGATGGTGAAGAAGAT+AGG 0.462708 8.2:-80893901 MS.gene39292:CDS
GCCGGGCATTGGTTTAGGTC+AGG 0.463580 8.2:-80893657 MS.gene39292:CDS
GACAGAGAAGAAGACTGAAC+CGG 0.467128 8.2:-80893429 MS.gene39292:CDS
CCAGTTGAAACAAAATTCAC+AGG 0.467449 8.2:+80893971 None:intergenic
TGATGAGAATTTGAAAGAAC+AGG 0.467505 8.2:-80893921 MS.gene39292:CDS
TCTATCAATCTCTTGGATGT+TGG 0.469174 8.2:+80893127 None:intergenic
TGTAACTGCTAAGGAGTTGT+TGG 0.469240 8.2:-80893327 MS.gene39292:CDS
TTGGAGGAGAAGAAGAAGAA+GGG 0.470912 8.2:-80893686 MS.gene39292:CDS
AATCGACTCTCTAAATCAAA+AGG 0.472047 8.2:-80891719 MS.gene39292:CDS
TCGGCTAGTATCTCGGGGTC+TGG 0.472352 8.2:-80893854 MS.gene39292:CDS
TCTGACTTGCCGGGTTCACT+TGG 0.475554 8.2:+80892268 None:intergenic
AATGAAGCTGCTTGAGAAGA+TGG 0.478922 8.2:-80893585 MS.gene39292:CDS
GTTGGAGAAGAGAACACCTT+AGG 0.479578 8.2:-80892978 MS.gene39292:CDS
AAGAAGAAGGGGAAGAAGCC+GGG 0.485235 8.2:-80893674 MS.gene39292:CDS
CATATGCTATATTGTCCCCT+TGG 0.485482 8.2:-80892377 MS.gene39292:CDS
AGCATGGCTGGTGGCGCAGA+TGG 0.487215 8.2:-80891871 MS.gene39292:CDS
ATCCATGGCTACCCCTGCTA+GGG 0.489307 8.2:-80892482 MS.gene39292:CDS
AAGGGGAAGAAGCCGGGCAT+TGG 0.491690 8.2:-80893668 MS.gene39292:CDS
TATACTGAAGCTCAGGCATT+GGG 0.492735 8.2:+80893180 None:intergenic
TCCGAAGACTACCATGATGA+TGG 0.493089 8.2:-80894049 MS.gene39292:CDS
TGCCCTAGCAGGGGTAGCCA+TGG 0.494447 8.2:+80892480 None:intergenic
CTTATCTTCTCCTTCAAACC+AGG 0.494860 8.2:+80891973 None:intergenic
ACCCCTGCTAGGGCACAAGC+TGG 0.496535 8.2:-80892472 MS.gene39292:CDS
CTGTATTTGATTCTGATAGC+TGG 0.496901 8.2:-80892350 MS.gene39292:CDS
GATCAAGATTCTGACTTGCC+GGG 0.497039 8.2:+80892259 None:intergenic
TTATACTGAAGCTCAGGCAT+TGG 0.497443 8.2:+80893179 None:intergenic
ATCCAATGTTAATGTTCCTA+AGG 0.499131 8.2:+80892962 None:intergenic
TCAGCTTTGGTACGATAAAA+CGG 0.499436 8.2:+80892313 None:intergenic
AAGAGATTGATAGAGATTTG+AGG 0.504347 8.2:-80893118 MS.gene39292:CDS
CACCTTAGGAACATTAACAT+TGG 0.505825 8.2:-80892964 MS.gene39292:CDS
TCCTATTGAGGCAAAGTTGA+GGG 0.506308 8.2:-80893516 MS.gene39292:CDS
ATAACGTAGCACTAATAGTT+CGG 0.507572 8.2:-80893160 MS.gene39292:CDS
ATCTTATTGAGGCTTATGCT+CGG 0.511086 8.2:-80891825 MS.gene39292:CDS
ATAGAGATTTGAGGAAAGAG+AGG 0.513041 8.2:-80893109 MS.gene39292:CDS
GCCAAAACTATCAAGTGCAG+TGG 0.513710 8.2:-80892553 MS.gene39292:CDS
ATTGGAGGAGAAGAAGAAGA+AGG 0.514247 8.2:-80893687 MS.gene39292:CDS
GTATCAATACTTGGCATGCA+CGG 0.515579 8.2:-80892665 MS.gene39292:CDS
ACAACGGTCATCAAATATAT+GGG 0.518474 8.2:-80891762 MS.gene39292:CDS
ACAACAAGCTGCTGCAAGCA+TGG 0.518724 8.2:-80891887 MS.gene39292:CDS
TCCACACATGGGTGCATCCA+TGG 0.522047 8.2:-80892497 MS.gene39292:CDS
TGGAGGAGAAGAAGAAGAAG+GGG 0.524605 8.2:-80893685 MS.gene39292:CDS
TACTAGAATACCCATCATCA+TGG 0.524632 8.2:+80894038 None:intergenic
TCAGAAGATTTATGATATGA+GGG 0.525953 8.2:-80893273 MS.gene39292:CDS
TCTTATTGAGGCTTATGCTC+GGG 0.526021 8.2:-80891824 MS.gene39292:CDS
TCCATCTCATGGTTTGGAGT+TGG 0.526127 8.2:-80892802 MS.gene39292:CDS
GGTTGTGCAACCTGGTTTGA+AGG 0.528723 8.2:-80891983 MS.gene39292:CDS
GCTACGTTATACTGAAGCTC+AGG 0.531815 8.2:+80893173 None:intergenic
GAACCAGGCTGTTGAAGGTA+TGG 0.534382 8.2:-80892007 MS.gene39292:CDS
ATAGTAGCAAGAACTGAAGA+AGG 0.534632 8.2:+80892594 None:intergenic
TTTAGGTCAGGAGGGAGCTG+TGG 0.534834 8.2:-80893645 MS.gene39292:CDS
AATGCTGGTCGTGGTGTGAA+TGG 0.539364 8.2:-80893821 MS.gene39292:CDS
GAGGGAGAAGGAGAGATTGG+AGG 0.540333 8.2:-80893702 MS.gene39292:CDS
TATCAGAATGTTCCAAGGAT+GGG 0.541188 8.2:-80892838 MS.gene39292:CDS
CAGAAGATTTATGATATGAG+GGG 0.544424 8.2:-80893272 MS.gene39292:CDS
GGAAAAGTATGTAACTGCTA+AGG 0.545075 8.2:-80893336 MS.gene39292:CDS
TTATCAGAATGTTCCAAGGA+TGG 0.545083 8.2:-80892839 MS.gene39292:CDS
TATCAATACTTGGCATGCAC+GGG 0.546744 8.2:-80892664 MS.gene39292:CDS
TCTGGTTTAGGATTTAATGC+TGG 0.547046 8.2:-80893836 MS.gene39292:CDS
CCTCTTCGAAATCCATCTCA+TGG 0.547824 8.2:-80892813 MS.gene39292:CDS
CTCCAGCTTGTGCCCTAGCA+GGG 0.548394 8.2:+80892470 None:intergenic
TGAAAAGATAATGAGTGTGC+TGG 0.550040 8.2:-80893006 MS.gene39292:CDS
GGTATGGAGGTTGTGCAACC+TGG 0.550151 8.2:-80891991 MS.gene39292:CDS
TCATCTGATGGTTGACACAA+TGG 0.550438 8.2:-80892196 MS.gene39292:CDS
TGGTCTTGGGAAGAATGAGC+AGG 0.554574 8.2:-80893549 MS.gene39292:CDS
TTATACTCAATTGGTTTCAG+AGG 0.556724 8.2:-80892715 MS.gene39292:CDS
ATCAAGTGCAGTGGGTACTT+GGG 0.558150 8.2:-80892544 MS.gene39292:CDS
ACAGAGAAGAAGACTGAACC+GGG 0.558425 8.2:-80893428 MS.gene39292:CDS
AGAATTCACCATTAACCCAT+TGG 0.558800 8.2:+80894143 None:intergenic
AGCAGCTTGTTGTTGAGCAG+AGG 0.559345 8.2:+80891897 None:intergenic
CAAAACGGGCAACGGCATAG+TGG 0.559472 8.2:+80893454 None:intergenic
GAGTATCTGGTATCAATACT+TGG 0.559939 8.2:-80892674 MS.gene39292:CDS
TATAGATGAGGATCAAGAGA+TGG 0.560053 8.2:-80894200 MS.gene39292:CDS
GCTGCTGCAAGCATGGCTGG+TGG 0.561489 8.2:-80891880 MS.gene39292:CDS
ACTGTAGGCTGCACAACCCC+CGG 0.561582 8.2:+80893410 None:intergenic
GCATATGCAGAACCATCACT+TGG 0.561871 8.2:+80892393 None:intergenic
GGGAGCCATGAAGAGGGAGA+AGG 0.561897 8.2:-80893714 MS.gene39292:CDS
GAATCAAATACAGTCTTCCA+AGG 0.562070 8.2:+80892360 None:intergenic
GGAGTTGGTATCACAGTGGA+AGG 0.562462 8.2:-80892787 MS.gene39292:CDS
AAAGGAGAAGTTGGAAGCTG+AGG 0.562740 8.2:-80893060 MS.gene39292:CDS
TTTGAGTTCGAGCTTTCTCT+CGG 0.562831 8.2:+80894107 None:intergenic
TTAGGATTTAATGCTGGTCG+TGG 0.567508 8.2:-80893830 MS.gene39292:CDS
AGATGACTTCCAAGTGAACC+CGG 0.567771 8.2:-80892277 MS.gene39292:CDS
GGTGCATGGCACCCAAGTGA+TGG 0.568932 8.2:-80892405 MS.gene39292:CDS
ATGATGAACCAGGCTGTTGA+AGG 0.577293 8.2:-80892012 MS.gene39292:CDS
GGGGTTGTGCAGCCTACAGT+TGG 0.578126 8.2:-80893407 MS.gene39292:CDS
CCGAAGACTACCATGATGAT+GGG 0.578283 8.2:-80894048 MS.gene39292:CDS
TAAGCAAGAAGAAGAGTCAG+AGG 0.579514 8.2:-80893300 MS.gene39292:CDS
ATACAAAACCGTAAGCCACT+TGG 0.580893 8.2:+80892161 None:intergenic
CCTCCATACCTTCAACAGCC+TGG 0.581127 8.2:+80892004 None:intergenic
GAGCGTGAAAGATCTTATTG+AGG 0.582014 8.2:-80891836 MS.gene39292:CDS
AAAGGTCTATGCCCAAAATG+AGG 0.582372 8.2:-80891701 MS.gene39292:CDS
TAGAGATTTGAGGAAAGAGA+GGG 0.583409 8.2:-80893108 MS.gene39292:CDS
ACCAACTCCAAACCATGAGA+TGG 0.585318 8.2:+80892801 None:intergenic
TGAGAAGATGGGTTATAAAG+GGG 0.586441 8.2:-80893573 MS.gene39292:CDS
ATACCAGATACTCTAACAGC+TGG 0.587531 8.2:+80892684 None:intergenic
TCTGTCTGCAAAACGGGCAA+CGG 0.587541 8.2:+80893446 None:intergenic
TCTTGGATTTAACGAATCGA+AGG 0.588690 8.2:-80893480 MS.gene39292:CDS
AAATTCGAGAGTCATACAAA+GGG 0.591053 8.2:-80893614 MS.gene39292:CDS
TTGTTTATCAGAATGTTCCA+AGG 0.593879 8.2:-80892843 MS.gene39292:CDS
ATCCTATTGAGGCAAAGTTG+AGG 0.595316 8.2:-80893517 MS.gene39292:CDS
CAGTTGGAAGAACACGTTCG+TGG 0.598877 8.2:-80893391 MS.gene39292:CDS
GAACGTGTTCTTCCAACTGT+AGG 0.599260 8.2:+80893395 None:intergenic
GAAATTCGAGAGTCATACAA+AGG 0.599821 8.2:-80893615 MS.gene39292:CDS
TAAGGAGGGAGCCATGAAGA+GGG 0.600103 8.2:-80893720 MS.gene39292:CDS
GATGGTGAAGAAGATAGGCC+TGG 0.601036 8.2:-80893896 MS.gene39292:CDS
GGCATTGGTTTAGGTCAGGA+GGG 0.601669 8.2:-80893653 MS.gene39292:CDS
GGAGAAGATAAGCTATATCA+GGG 0.605602 8.2:-80891962 MS.gene39292:CDS
AATCAAATACAGTCTTCCAA+GGG 0.606618 8.2:+80892361 None:intergenic
ATTCGATACAAGCTCAATTG+TGG 0.607064 8.2:-80892042 MS.gene39292:CDS
TTAGAAGATGGATATAGATG+AGG 0.607275 8.2:-80894212 None:intergenic
TGGAGATCTTCTTTGCCAAG+TGG 0.608455 8.2:-80892176 MS.gene39292:CDS
GGATGCACCCATGTGTGGAT+AGG 0.608809 8.2:+80892501 None:intergenic
TCCTGACCTAAACCAATGCC+CGG 0.610190 8.2:+80893656 None:intergenic
ATGAAGCTGCTTGAGAAGAT+GGG 0.610235 8.2:-80893584 MS.gene39292:CDS
CTTGGATTTAACGAATCGAA+GGG 0.614678 8.2:-80893479 MS.gene39292:CDS
TCCAGCTTGTGCCCTAGCAG+GGG 0.617024 8.2:+80892471 None:intergenic
TGGAACATTCTGATAAACAA+AGG 0.617370 8.2:+80892846 None:intergenic
AGACTATTCCTATCCACACA+TGG 0.617573 8.2:-80892509 MS.gene39292:CDS
GCCATGGATGCACCCATGTG+TGG 0.620709 8.2:+80892496 None:intergenic
TTTGTCTGATTTGAATGCTG+AGG 0.621521 8.2:-80893225 MS.gene39292:CDS
GGGCATTGGTTTAGGTCAGG+AGG 0.622016 8.2:-80893654 MS.gene39292:CDS
TTTGGGAAGATGATTAAGGA+GGG 0.623022 8.2:-80893734 MS.gene39292:CDS
ATGCCCAAAATGAGGAGACA+TGG 0.624654 8.2:-80891693 MS.gene39292:CDS
TGTCCGTAAAGCATTGAGCA+AGG 0.624936 8.2:+80892937 None:intergenic
CCAAAACCTAACCCTAAACC+AGG 0.625240 8.2:+80893878 None:intergenic
ATATCAGGGTAAGTGAGCAA+AGG 0.626469 8.2:-80891948 MS.gene39292:CDS
GTTTGGGAAGATGATTAAGG+AGG 0.626936 8.2:-80893735 MS.gene39292:CDS
GAGAAGATGGGTTATAAAGG+GGG 0.630333 8.2:-80893572 MS.gene39292:CDS
GTCCGTAAAGCATTGAGCAA+GGG 0.632161 8.2:+80892938 None:intergenic
TGAGTACTGTTCTTGGTGCA+TGG 0.632481 8.2:-80892419 MS.gene39292:CDS
GAATGCTGAGGAGAAAGCAA+AGG 0.632682 8.2:-80893213 MS.gene39292:CDS
CATGCACAAAAGATTTGCTG+AGG 0.634301 8.2:-80892916 MS.gene39292:CDS
AATTTGAAAGAACAGGATGA+TGG 0.635084 8.2:-80893914 MS.gene39292:CDS
GGGATCCTGAACCAATGCTA+CGG 0.635248 8.2:-80892644 MS.gene39292:CDS
CCATGAGATGGATTTCGAAG+AGG 0.636233 8.2:+80892813 None:intergenic
ATGAGTGTGCTGGACAGAGT+TGG 0.636674 8.2:-80892996 MS.gene39292:CDS
AGAAGATTTATGATATGAGG+GGG 0.637702 8.2:-80893271 MS.gene39292:CDS
TTAAGGAGGGAGCCATGAAG+AGG 0.639085 8.2:-80893721 MS.gene39292:CDS
CCAAAACTATCAAGTGCAGT+GGG 0.645728 8.2:-80892552 MS.gene39292:CDS
TTGGGTCGGCTAGTATCTCG+GGG 0.651866 8.2:-80893859 MS.gene39292:CDS
TCTGTTAAAACTCGTACCTG+CGG 0.658982 8.2:+80893248 None:intergenic
ATCATCTTCCCAAACGCAGT+AGG 0.663558 8.2:+80893743 None:intergenic
GACTATTCCTATCCACACAT+GGG 0.664132 8.2:-80892508 MS.gene39292:CDS
CCAGGCTGTTGAAGGTATGG+AGG 0.671559 8.2:-80892004 MS.gene39292:CDS
AGAGATGGAGAATTTCGGAA+CGG 0.680307 8.2:-80894185 MS.gene39292:CDS
ATAGGAATAGTCTCAAGATG+TGG 0.683050 8.2:+80892519 None:intergenic
GGTCTTGGGAAGAATGAGCA+GGG 0.684826 8.2:-80893548 MS.gene39292:CDS
CATATGCAGAACCATCACTT+GGG 0.687563 8.2:+80892394 None:intergenic
ATCAAATACAGTCTTCCAAG+GGG 0.688889 8.2:+80892362 None:intergenic
CCTGCTAGGGCACAAGCTGG+AGG 0.690416 8.2:-80892469 MS.gene39292:CDS
TGGTCTTGATATGATGAACC+AGG 0.696080 8.2:-80892022 MS.gene39292:CDS
CAGAGAAGAAGACTGAACCG+GGG 0.707743 8.2:-80893427 MS.gene39292:CDS
AGAGAAGAAGACTGAACCGG+GGG 0.713315 8.2:-80893426 MS.gene39292:CDS
GTTTGGAGTTGGTATCACAG+TGG 0.727402 8.2:-80892791 MS.gene39292:CDS
AAATCTGGTAGAACGCACAA+CGG 0.732054 8.2:-80891778 MS.gene39292:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTCTTTATTTTTTTTCTT+CGG + chr8.2:80892479-80892498 None:intergenic 15.0%
!! AATCTGATAAGAATGATAAT+CGG - chr8.2:80892054-80892073 MS.gene39292:CDS 20.0%
!! GAAGAAAAAAAATAAAGAAG+AGG - chr8.2:80892478-80892497 MS.gene39292:CDS 20.0%
!!! AGAATCTTGATCAATTTTAT+TGG - chr8.2:80893587-80893606 MS.gene39292:CDS 20.0%
!!! AGATGATTGTTTTGATATAT+GGG - chr8.2:80893084-80893103 MS.gene39292:CDS 20.0%
!!! GAATCTTGATCAATTTTATT+GGG - chr8.2:80893588-80893607 MS.gene39292:CDS 20.0%
! ATCTGATAAGAATGATAATC+GGG - chr8.2:80892055-80892074 MS.gene39292:CDS 25.0%
! GAAGTTACAAAATGGTATTT+GGG - chr8.2:80893727-80893746 MS.gene39292:CDS 25.0%
! TCAGAAGATTTATGATATGA+GGG - chr8.2:80892562-80892581 MS.gene39292:CDS 25.0%
! TTCAGAAGATTTATGATATG+AGG - chr8.2:80892561-80892580 MS.gene39292:CDS 25.0%
!! AAAAAGCGAAGAAAAGATTT+TGG - chr8.2:80891819-80891838 MS.gene39292:CDS 25.0%
!! AATTTTATTGGGTTATGAAC+TGG - chr8.2:80893599-80893618 MS.gene39292:CDS 25.0%
!! ACTTAGCTTGAAAAAAGAAA+AGG - chr8.2:80892757-80892776 MS.gene39292:CDS 25.0%
!! ACTTATTCCAAAAGAACTTT+TGG - chr8.2:80893759-80893778 MS.gene39292:CDS 25.0%
!! ATTTTATTGGGTTATGAACT+GGG - chr8.2:80893600-80893619 MS.gene39292:CDS 25.0%
!! GATGTTATATATGGAGTTTT+TGG - chr8.2:80891759-80891778 MS.gene39292:CDS 25.0%
!!! GAGATGATTGTTTTGATATA+TGG - chr8.2:80893083-80893102 MS.gene39292:CDS 25.0%
!!! TCTTTATTTTTTTTCTTCGG+CGG + chr8.2:80892476-80892495 None:intergenic 25.0%
AAATTCGAGAGTCATACAAA+GGG - chr8.2:80892221-80892240 MS.gene39292:CDS 30.0%
AAGAGATTGATAGAGATTTG+AGG - chr8.2:80892717-80892736 MS.gene39292:CDS 30.0%
AATCAAATACAGTCTTCCAA+GGG + chr8.2:80893477-80893496 None:intergenic 30.0%
AATTTGAAAGAACAGGATGA+TGG - chr8.2:80891921-80891940 MS.gene39292:CDS 30.0%
ACAACGGTCATCAAATATAT+GGG - chr8.2:80894073-80894092 MS.gene39292:CDS 30.0%
ACCAAAGACGATGTTATATA+TGG - chr8.2:80891750-80891769 MS.gene39292:CDS 30.0%
ACTTTGACGAAGTTACAAAA+TGG - chr8.2:80893719-80893738 MS.gene39292:CDS 30.0%
AGAAGATTTATGATATGAGG+GGG - chr8.2:80892564-80892583 MS.gene39292:CDS 30.0%
ATAACGTAGCACTAATAGTT+CGG - chr8.2:80892675-80892694 MS.gene39292:CDS 30.0%
ATCCAATGTTAATGTTCCTA+AGG + chr8.2:80892876-80892895 None:intergenic 30.0%
CAGAAGATTTATGATATGAG+GGG - chr8.2:80892563-80892582 MS.gene39292:CDS 30.0%
CGAAGTTACAAAATGGTATT+TGG - chr8.2:80893726-80893745 MS.gene39292:CDS 30.0%
CTCATCAACATTATCCTTAT+CGG + chr8.2:80891901-80891920 None:intergenic 30.0%
GAAAAAAGAAAAGGAGAAGT+TGG - chr8.2:80892766-80892785 MS.gene39292:CDS 30.0%
TCAAATCTCTATCAATCTCT+TGG + chr8.2:80892718-80892737 None:intergenic 30.0%
TCATCAACATTATCCTTATC+GGG + chr8.2:80891900-80891919 None:intergenic 30.0%
TCCATATATAACATCGTCTT+TGG + chr8.2:80891754-80891773 None:intergenic 30.0%
TGATGAGAATTTGAAAGAAC+AGG - chr8.2:80891914-80891933 MS.gene39292:CDS 30.0%
TGGAACATTCTGATAAACAA+AGG + chr8.2:80892992-80893011 None:intergenic 30.0%
TTACTGTTCAAACCTAAATC+TGG - chr8.2:80894042-80894061 MS.gene39292:CDS 30.0%
TTGTTTATCAGAATGTTCCA+AGG - chr8.2:80892992-80893011 MS.gene39292:CDS 30.0%
TTTGTAACTTCGTCAAAGTT+AGG + chr8.2:80893718-80893737 None:intergenic 30.0%
! AATCGACTCTCTAAATCAAA+AGG - chr8.2:80894116-80894135 MS.gene39292:CDS 30.0%
! TCAATTTGAAACGAATTGTC+TGG + chr8.2:80893399-80893418 None:intergenic 30.0%
! TCATTTGCCAAAAGTTCTTT+TGG + chr8.2:80893769-80893788 None:intergenic 30.0%
! TCTGAAACCAATTGAGTATA+AGG + chr8.2:80893121-80893140 None:intergenic 30.0%
! TTATACTCAATTGGTTTCAG+AGG - chr8.2:80893120-80893139 MS.gene39292:CDS 30.0%
! TTCAAATTGAGTACTGTTCT+TGG - chr8.2:80893409-80893428 MS.gene39292:CDS 30.0%
!! AAAAGATTTTGGAAGGAAAC+AGG - chr8.2:80891830-80891849 MS.gene39292:CDS 30.0%
!! TTGAGAAGATGGGTTATAAA+GGG - chr8.2:80892261-80892280 MS.gene39292:CDS 30.0%
AAGTTGAGGGCTAAAAATTC+TGG - chr8.2:80892332-80892351 MS.gene39292:CDS 35.0%
AGAATTCACCATTAACCCAT+TGG + chr8.2:80891695-80891714 None:intergenic 35.0%
AGGAGAAGATAAGCTATATC+AGG - chr8.2:80893872-80893891 MS.gene39292:CDS 35.0%
ATAGAGATTTGAGGAAAGAG+AGG - chr8.2:80892726-80892745 MS.gene39292:CDS 35.0%
ATAGGAATAGTCTCAAGATG+TGG + chr8.2:80893319-80893338 None:intergenic 35.0%
ATAGTAGCAAGAACTGAAGA+AGG + chr8.2:80893244-80893263 None:intergenic 35.0%
ATCAAATACAGTCTTCCAAG+GGG + chr8.2:80893476-80893495 None:intergenic 35.0%
ATCTTATTGAGGCTTATGCT+CGG - chr8.2:80894010-80894029 MS.gene39292:CDS 35.0%
ATTCGATACAAGCTCAATTG+TGG - chr8.2:80893793-80893812 MS.gene39292:CDS 35.0%
CACAACGGTCATCAAATATA+TGG - chr8.2:80894072-80894091 MS.gene39292:CDS 35.0%
CACCTTAGGAACATTAACAT+TGG - chr8.2:80892871-80892890 MS.gene39292:CDS 35.0%
CCAGTTGAAACAAAATTCAC+AGG + chr8.2:80891867-80891886 None:intergenic 35.0%
CTGTATTTGATTCTGATAGC+TGG - chr8.2:80893485-80893504 MS.gene39292:CDS 35.0%
CTTGGATTTAACGAATCGAA+GGG - chr8.2:80892356-80892375 MS.gene39292:CDS 35.0%
GAAATTCGAGAGTCATACAA+AGG - chr8.2:80892220-80892239 MS.gene39292:CDS 35.0%
GAATCAAATACAGTCTTCCA+AGG + chr8.2:80893478-80893497 None:intergenic 35.0%
GAGTATCTGGTATCAATACT+TGG - chr8.2:80893161-80893180 MS.gene39292:CDS 35.0%
GATCAAGAGATGGAGAATTT+CGG - chr8.2:80891645-80891664 MS.gene39292:CDS 35.0%
GGAGAAGATAAGCTATATCA+GGG - chr8.2:80893873-80893892 MS.gene39292:CDS 35.0%
GGTCATCAAATATATGGGTT+TGG - chr8.2:80894078-80894097 MS.gene39292:CDS 35.0%
GTCATCACCTTATACTCAAT+TGG - chr8.2:80893111-80893130 MS.gene39292:CDS 35.0%
TACTAGAATACCCATCATCA+TGG + chr8.2:80891800-80891819 None:intergenic 35.0%
TAGAGATTTGAGGAAAGAGA+GGG - chr8.2:80892727-80892746 MS.gene39292:CDS 35.0%
TATAGATGAGGATCAAGAGA+TGG - chr8.2:80891635-80891654 MS.gene39292:CDS 35.0%
TATCAGAATGTTCCAAGGAT+GGG - chr8.2:80892997-80893016 MS.gene39292:CDS 35.0%
TCTATCAATCTCTTGGATGT+TGG + chr8.2:80892711-80892730 None:intergenic 35.0%
TCTTGGATTTAACGAATCGA+AGG - chr8.2:80892355-80892374 MS.gene39292:CDS 35.0%
TGAAAAGATAATGAGTGTGC+TGG - chr8.2:80892829-80892848 MS.gene39292:CDS 35.0%
TTACAAAATGGTATTTGGGC+TGG - chr8.2:80893731-80893750 MS.gene39292:CDS 35.0%
TTATCAGAATGTTCCAAGGA+TGG - chr8.2:80892996-80893015 MS.gene39292:CDS 35.0%
TTTGGGAAGATGATTAAGGA+GGG - chr8.2:80892101-80892120 MS.gene39292:CDS 35.0%
! AAATTTTTGCCTACTGCGTT+TGG - chr8.2:80892083-80892102 MS.gene39292:CDS 35.0%
! AATTTTTGCCTACTGCGTTT+GGG - chr8.2:80892084-80892103 MS.gene39292:CDS 35.0%
! AGCGAAGAAAAGATTTTGGA+AGG - chr8.2:80891823-80891842 MS.gene39292:CDS 35.0%
! GGAAAAGTATGTAACTGCTA+AGG - chr8.2:80892499-80892518 MS.gene39292:CDS 35.0%
! TCAGCTTTGGTACGATAAAA+CGG + chr8.2:80893525-80893544 None:intergenic 35.0%
! TCTGGTTTAGGATTTAATGC+TGG - chr8.2:80891999-80892018 MS.gene39292:CDS 35.0%
! TGGAAATTTTATGCCCGATA+AGG - chr8.2:80891884-80891903 MS.gene39292:CDS 35.0%
! TTTGTCTGATTTGAATGCTG+AGG - chr8.2:80892610-80892629 MS.gene39292:CDS 35.0%
! TTTTATCGTACCAAAGCTGA+AGG - chr8.2:80893525-80893544 MS.gene39292:CDS 35.0%
!! CCTGTGAATTTTGTTTCAAC+TGG - chr8.2:80891864-80891883 MS.gene39292:CDS 35.0%
!! CTTGAGAAGATGGGTTATAA+AGG - chr8.2:80892260-80892279 MS.gene39292:CDS 35.0%
!! GGGTATTTTGAATCCTATTG+AGG - chr8.2:80892307-80892326 MS.gene39292:CDS 35.0%
!! TGAGAAGATGGGTTATAAAG+GGG - chr8.2:80892262-80892281 MS.gene39292:CDS 35.0%
AAAGGTCTATGCCCAAAATG+AGG - chr8.2:80894134-80894153 MS.gene39292:CDS 40.0%
AAATCTGGTAGAACGCACAA+CGG - chr8.2:80894057-80894076 MS.gene39292:CDS 40.0%
AAGAAGATAGGCCTGGTTTA+GGG - chr8.2:80891946-80891965 MS.gene39292:CDS 40.0%
AATGAAGCTGCTTGAGAAGA+TGG - chr8.2:80892250-80892269 MS.gene39292:CDS 40.0%
AGACTATTCCTATCCACACA+TGG - chr8.2:80893326-80893345 MS.gene39292:CDS 40.0%
AGAGATGGAGAATTTCGGAA+CGG - chr8.2:80891650-80891669 MS.gene39292:CDS 40.0%
AGGGCTAAAAATTCTGGTCT+TGG - chr8.2:80892338-80892357 MS.gene39292:CDS 40.0%
ATACAAAACCGTAAGCCACT+TGG + chr8.2:80893677-80893696 None:intergenic 40.0%
ATACCAGATACTCTAACAGC+TGG + chr8.2:80893154-80893173 None:intergenic 40.0%
ATATCAGGGTAAGTGAGCAA+AGG - chr8.2:80893887-80893906 MS.gene39292:CDS 40.0%
ATCCTATTGAGGCAAAGTTG+AGG - chr8.2:80892318-80892337 MS.gene39292:CDS 40.0%
ATGAAGCTGCTTGAGAAGAT+GGG - chr8.2:80892251-80892270 MS.gene39292:CDS 40.0%
ATTGGAGGAGAAGAAGAAGA+AGG - chr8.2:80892148-80892167 MS.gene39292:CDS 40.0%
CATATGCAGAACCATCACTT+GGG + chr8.2:80893444-80893463 None:intergenic 40.0%
CATATGCTATATTGTCCCCT+TGG - chr8.2:80893458-80893477 MS.gene39292:CDS 40.0%
CCAAAACTATCAAGTGCAGT+GGG - chr8.2:80893283-80893302 MS.gene39292:CDS 40.0%
CTTATCTTCTCCTTCAAACC+AGG + chr8.2:80893865-80893884 None:intergenic 40.0%
CTTCTTCTCTGTCTGCAAAA+CGG + chr8.2:80892399-80892418 None:intergenic 40.0%
GACTATTCCTATCCACACAT+GGG - chr8.2:80893327-80893346 MS.gene39292:CDS 40.0%
GAGAGTCATACAAAGGGAAT+TGG - chr8.2:80892227-80892246 MS.gene39292:CDS 40.0%
GAGCGTGAAAGATCTTATTG+AGG - chr8.2:80893999-80894018 MS.gene39292:CDS 40.0%
GGCTATTCCAATTCATCTGA+TGG - chr8.2:80893627-80893646 MS.gene39292:CDS 40.0%
GTATCAATACTTGGCATGCA+CGG - chr8.2:80893170-80893189 MS.gene39292:CDS 40.0%
GTGTCAACCATCAGATGAAT+TGG + chr8.2:80893637-80893656 None:intergenic 40.0%
GTTTGGGAAGATGATTAAGG+AGG - chr8.2:80892100-80892119 MS.gene39292:CDS 40.0%
TAAGCAAGAAGAAGAGTCAG+AGG - chr8.2:80892535-80892554 MS.gene39292:CDS 40.0%
TATACTGAAGCTCAGGCATT+GGG + chr8.2:80892658-80892677 None:intergenic 40.0%
TATCAATACTTGGCATGCAC+GGG - chr8.2:80893171-80893190 MS.gene39292:CDS 40.0%
TCATCTGATGGTTGACACAA+TGG - chr8.2:80893639-80893658 MS.gene39292:CDS 40.0%
TCCTATTGAGGCAAAGTTGA+GGG - chr8.2:80892319-80892338 MS.gene39292:CDS 40.0%
TCGAAATCCATCTCATGGTT+TGG - chr8.2:80893027-80893046 MS.gene39292:CDS 40.0%
TCTGTTAAAACTCGTACCTG+CGG + chr8.2:80892590-80892609 None:intergenic 40.0%
TCTTATTGAGGCTTATGCTC+GGG - chr8.2:80894011-80894030 MS.gene39292:CDS 40.0%
TGCGTTTGGGAAGATGATTA+AGG - chr8.2:80892097-80892116 MS.gene39292:CDS 40.0%
TGTAACTGCTAAGGAGTTGT+TGG - chr8.2:80892508-80892527 MS.gene39292:CDS 40.0%
TTAGGATTTAATGCTGGTCG+TGG - chr8.2:80892005-80892024 MS.gene39292:CDS 40.0%
TTATACTGAAGCTCAGGCAT+TGG + chr8.2:80892659-80892678 None:intergenic 40.0%
TTCCCTTGCTCAATGCTTTA+CGG - chr8.2:80892895-80892914 MS.gene39292:CDS 40.0%
TTCTTCTCTGTCTGCAAAAC+GGG + chr8.2:80892398-80892417 None:intergenic 40.0%
TTGGAGGAGAAGAAGAAGAA+GGG - chr8.2:80892149-80892168 MS.gene39292:CDS 40.0%
TTGTGCGTTCTACCAGATTT+AGG + chr8.2:80894057-80894076 None:intergenic 40.0%
! AAGACCATGTCTCCTCATTT+TGG + chr8.2:80894149-80894168 None:intergenic 40.0%
! AGACCATGTCTCCTCATTTT+GGG + chr8.2:80894148-80894167 None:intergenic 40.0%
! AGGATGATGGTGAAGAAGAT+AGG - chr8.2:80891934-80891953 MS.gene39292:CDS 40.0%
! GGAACGGAGAAAGATTTTGA+AGG - chr8.2:80891666-80891685 MS.gene39292:CDS 40.0%
! TGAACCAATGCTACGGTTTT+TGG - chr8.2:80893198-80893217 MS.gene39292:CDS 40.0%
! TGATCAAGATTCTGACTTGC+CGG + chr8.2:80893580-80893599 None:intergenic 40.0%
! TGGTCTTGATATGATGAACC+AGG - chr8.2:80893813-80893832 MS.gene39292:CDS 40.0%
! TTTGAGTTCGAGCTTTCTCT+CGG + chr8.2:80891731-80891750 None:intergenic 40.0%
!! AAAAACCGTAGCATTGGTTC+AGG + chr8.2:80893199-80893218 None:intergenic 40.0%
!! AAGATTTTGAAGGTGGCCAA+TGG - chr8.2:80891676-80891695 MS.gene39292:CDS 40.0%
!! ACGGAGAAAGATTTTGAAGG+TGG - chr8.2:80891669-80891688 MS.gene39292:CDS 40.0%
!! AGATTTTGAAGGTGGCCAAT+GGG - chr8.2:80891677-80891696 MS.gene39292:CDS 40.0%
!! CATGCACAAAAGATTTGCTG+AGG - chr8.2:80892919-80892938 MS.gene39292:CDS 40.0%
!! CTGGTTTAGGGTTAGGTTTT+GGG - chr8.2:80891958-80891977 MS.gene39292:CDS 40.0%
!! GAGAAGATGGGTTATAAAGG+GGG - chr8.2:80892263-80892282 MS.gene39292:CDS 40.0%
!!! TTTAGGGTTAGGTTTTGGGT+CGG - chr8.2:80891962-80891981 MS.gene39292:CDS 40.0%
AAAGGAGAAGTTGGAAGCTG+AGG - chr8.2:80892775-80892794 MS.gene39292:CDS 45.0%
ACAGAGAAGAAGACTGAACC+GGG - chr8.2:80892407-80892426 MS.gene39292:CDS 45.0%
ACCAACTCCAAACCATGAGA+TGG + chr8.2:80893037-80893056 None:intergenic 45.0%
AGATGACTTCCAAGTGAACC+CGG - chr8.2:80893558-80893577 MS.gene39292:CDS 45.0%
ATCAAGTGCAGTGGGTACTT+GGG - chr8.2:80893291-80893310 MS.gene39292:CDS 45.0%
ATCATCTTCCCAAACGCAGT+AGG + chr8.2:80892095-80892114 None:intergenic 45.0%
ATGATGAACCAGGCTGTTGA+AGG - chr8.2:80893823-80893842 MS.gene39292:CDS 45.0%
ATGCCCAAAATGAGGAGACA+TGG - chr8.2:80894142-80894161 MS.gene39292:CDS 45.0%
CCAAAACCTAACCCTAAACC+AGG + chr8.2:80891960-80891979 None:intergenic 45.0%
CCCATCATCATGGTAGTCTT+CGG + chr8.2:80891790-80891809 None:intergenic 45.0%
CCGAAGACTACCATGATGAT+GGG - chr8.2:80891787-80891806 MS.gene39292:CDS 45.0%
CCTCTTCGAAATCCATCTCA+TGG - chr8.2:80893022-80893041 MS.gene39292:CDS 45.0%
CTTCTTTGCCAAGTGGCTTA+CGG - chr8.2:80893666-80893685 MS.gene39292:CDS 45.0%
GAACGTGTTCTTCCAACTGT+AGG + chr8.2:80892443-80892462 None:intergenic 45.0%
GAAGAAGATAGGCCTGGTTT+AGG - chr8.2:80891945-80891964 MS.gene39292:CDS 45.0%
GAATGCTGAGGAGAAAGCAA+AGG - chr8.2:80892622-80892641 MS.gene39292:CDS 45.0%
GACAGAGAAGAAGACTGAAC+CGG - chr8.2:80892406-80892425 MS.gene39292:CDS 45.0%
GACTCCAAAAACCGTAGCAT+TGG + chr8.2:80893205-80893224 None:intergenic 45.0%
GCATATGCAGAACCATCACT+TGG + chr8.2:80893445-80893464 None:intergenic 45.0%
GCCAAAACTATCAAGTGCAG+TGG - chr8.2:80893282-80893301 MS.gene39292:CDS 45.0%
GCTACGTTATACTGAAGCTC+AGG + chr8.2:80892665-80892684 None:intergenic 45.0%
GTTATAAAGGGGGTGGTCTT+GGG - chr8.2:80892273-80892292 MS.gene39292:CDS 45.0%
GTTGGAGAAGAGAACACCTT+AGG - chr8.2:80892857-80892876 MS.gene39292:CDS 45.0%
TATCAAGTGCAGTGGGTACT+TGG - chr8.2:80893290-80893309 MS.gene39292:CDS 45.0%
TCCGAAGACTACCATGATGA+TGG - chr8.2:80891786-80891805 MS.gene39292:CDS 45.0%
TGGAGATCTTCTTTGCCAAG+TGG - chr8.2:80893659-80893678 MS.gene39292:CDS 45.0%
TGGAGGAGAAGAAGAAGAAG+GGG - chr8.2:80892150-80892169 MS.gene39292:CDS 45.0%
TTGGGTTATGAACTGGGCTT+CGG - chr8.2:80893606-80893625 MS.gene39292:CDS 45.0%
! CCATGAGATGGATTTCGAAG+AGG + chr8.2:80893025-80893044 None:intergenic 45.0%
! GATCAAGATTCTGACTTGCC+GGG + chr8.2:80893579-80893598 None:intergenic 45.0%
! TCCATCTCATGGTTTGGAGT+TGG - chr8.2:80893033-80893052 MS.gene39292:CDS 45.0%
! TGAGTACTGTTCTTGGTGCA+TGG - chr8.2:80893416-80893435 MS.gene39292:CDS 45.0%
! TTGCCAGCTGTTAGAGTATC+TGG - chr8.2:80893148-80893167 MS.gene39292:CDS 45.0%
!! AAGATGGGTTATAAAGGGGG+TGG - chr8.2:80892266-80892285 MS.gene39292:CDS 45.0%
!! CCCACTGCACTTGATAGTTT+TGG + chr8.2:80893286-80893305 None:intergenic 45.0%
!! CCTGGTTTAGGGTTAGGTTT+TGG - chr8.2:80891957-80891976 MS.gene39292:CDS 45.0%
!! GGCTTACGGTTTTGTATCGT+TGG - chr8.2:80893680-80893699 MS.gene39292:CDS 45.0%
!! GTCCGTAAAGCATTGAGCAA+GGG + chr8.2:80892900-80892919 None:intergenic 45.0%
!! GTTTGGAGTTGGTATCACAG+TGG - chr8.2:80893044-80893063 MS.gene39292:CDS 45.0%
!! TGTCCGTAAAGCATTGAGCA+AGG + chr8.2:80892901-80892920 None:intergenic 45.0%
!! TTTTGGGTCGGCTAGTATCT+CGG - chr8.2:80891974-80891993 MS.gene39292:CDS 45.0%
!!! GCTACGGTTTTTGGAGTCTT+GGG - chr8.2:80893207-80893226 MS.gene39292:CDS 45.0%
!!! TGCTACGGTTTTTGGAGTCT+TGG - chr8.2:80893206-80893225 MS.gene39292:CDS 45.0%
AAGAAGAAGGGGAAGAAGCC+GGG - chr8.2:80892161-80892180 MS.gene39292:CDS 50.0%
AATGCTGGTCGTGGTGTGAA+TGG - chr8.2:80892014-80892033 MS.gene39292:CDS 50.0%
ACAACAAGCTGCTGCAAGCA+TGG - chr8.2:80893948-80893967 MS.gene39292:CDS 50.0%
AGAGAAGAAGACTGAACCGG+GGG - chr8.2:80892409-80892428 MS.gene39292:CDS 50.0%
ATGAGTGTGCTGGACAGAGT+TGG - chr8.2:80892839-80892858 MS.gene39292:CDS 50.0%
CAGAGAAGAAGACTGAACCG+GGG - chr8.2:80892408-80892427 MS.gene39292:CDS 50.0%
CAGTTGGAAGAACACGTTCG+TGG - chr8.2:80892444-80892463 MS.gene39292:CDS 50.0%
GAACCAGGCTGTTGAAGGTA+TGG - chr8.2:80893828-80893847 MS.gene39292:CDS 50.0%
GAAGAAGAAGGGGAAGAAGC+CGG - chr8.2:80892160-80892179 MS.gene39292:CDS 50.0%
GAAGAGGGAGAAGGAGAGAT+TGG - chr8.2:80892130-80892149 MS.gene39292:CDS 50.0%
GAGGCTTATGCTCGGGATAA+TGG - chr8.2:80894018-80894037 MS.gene39292:CDS 50.0%
GATGGTGAAGAAGATAGGCC+TGG - chr8.2:80891939-80891958 MS.gene39292:CDS 50.0%
GCCCTCAACTTTGCCTCAAT+AGG + chr8.2:80892323-80892342 None:intergenic 50.0%
GGGATCCTGAACCAATGCTA+CGG - chr8.2:80893191-80893210 MS.gene39292:CDS 50.0%
GGTCTTGGGAAGAATGAGCA+GGG - chr8.2:80892287-80892306 MS.gene39292:CDS 50.0%
GGTTATAAAGGGGGTGGTCT+TGG - chr8.2:80892272-80892291 MS.gene39292:CDS 50.0%
TAAGGAGGGAGCCATGAAGA+GGG - chr8.2:80892115-80892134 MS.gene39292:CDS 50.0%
TCCTGACCTAAACCAATGCC+CGG + chr8.2:80892182-80892201 None:intergenic 50.0%
TCTCTCCTTCTCCCTCTTCA+TGG + chr8.2:80892129-80892148 None:intergenic 50.0%
TCTGTCTGCAAAACGGGCAA+CGG + chr8.2:80892392-80892411 None:intergenic 50.0%
TGCAAGACAGCCTTCAGCTT+TGG + chr8.2:80893538-80893557 None:intergenic 50.0%
TTAAGGAGGGAGCCATGAAG+AGG - chr8.2:80892114-80892133 MS.gene39292:CDS 50.0%
TTCGAAGAGGATCCCATCCT+TGG + chr8.2:80893012-80893031 None:intergenic 50.0%
TTTGGGTCGGCTAGTATCTC+GGG - chr8.2:80891975-80891994 MS.gene39292:CDS 50.0%
! AGTATCTCGGGGTCTGGTTT+AGG - chr8.2:80891987-80892006 MS.gene39292:CDS 50.0%
! GATAGGCCTGGTTTAGGGTT+AGG - chr8.2:80891951-80891970 MS.gene39292:CDS 50.0%
! GGTTGTGCAACCTGGTTTGA+AGG - chr8.2:80893852-80893871 MS.gene39292:CDS 50.0%
! TGGTCTTGGGAAGAATGAGC+AGG - chr8.2:80892286-80892305 MS.gene39292:CDS 50.0%
!! AAGAAGCCGGGCATTGGTTT+AGG - chr8.2:80892173-80892192 MS.gene39292:CDS 50.0%
!! AGCAGCTTGTTGTTGAGCAG+AGG + chr8.2:80893941-80893960 None:intergenic 50.0%
!! CAGTGGAAGGCATTGCTTCA+AGG - chr8.2:80893061-80893080 MS.gene39292:CDS 50.0%
!! GAAGGTGGCCAATGGGTTAA+TGG - chr8.2:80891684-80891703 MS.gene39292:CDS 50.0%
!! GGAGTTGGTATCACAGTGGA+AGG - chr8.2:80893048-80893067 MS.gene39292:CDS 50.0%
!! GGCATTGGTTTAGGTCAGGA+GGG - chr8.2:80892182-80892201 MS.gene39292:CDS 50.0%
AGGAGGGAGCTGTGGATGTT+GGG - chr8.2:80892198-80892217 MS.gene39292:CDS 55.0%
ATCCATGGCTACCCCTGCTA+GGG - chr8.2:80893353-80893372 MS.gene39292:CDS 55.0%
CAAAACGGGCAACGGCATAG+TGG + chr8.2:80892384-80892403 None:intergenic 55.0%
CCTCCATACCTTCAACAGCC+TGG + chr8.2:80893834-80893853 None:intergenic 55.0%
GAGGGAGAAGGAGAGATTGG+AGG - chr8.2:80892133-80892152 MS.gene39292:CDS 55.0%
GGATGCACCCATGTGTGGAT+AGG + chr8.2:80893337-80893356 None:intergenic 55.0%
GGTATGGAGGTTGTGCAACC+TGG - chr8.2:80893844-80893863 MS.gene39292:CDS 55.0%
TCCACACATGGGTGCATCCA+TGG - chr8.2:80893338-80893357 MS.gene39292:CDS 55.0%
TTATGATATGAGGGGGCCGC+AGG - chr8.2:80892571-80892590 MS.gene39292:CDS 55.0%
TTGGGTCGGCTAGTATCTCG+GGG - chr8.2:80891976-80891995 MS.gene39292:CDS 55.0%
TTTAGGTCAGGAGGGAGCTG+TGG - chr8.2:80892190-80892209 MS.gene39292:CDS 55.0%
! CCAGGCTGTTGAAGGTATGG+AGG - chr8.2:80893831-80893850 MS.gene39292:CDS 55.0%
! TCTGACTTGCCGGGTTCACT+TGG + chr8.2:80893570-80893589 None:intergenic 55.0%
!! GGGCATTGGTTTAGGTCAGG+AGG - chr8.2:80892181-80892200 MS.gene39292:CDS 55.0%
AAGGGGAAGAAGCCGGGCAT+TGG - chr8.2:80892167-80892186 MS.gene39292:CDS 60.0%
ACTGTAGGCTGCACAACCCC+CGG + chr8.2:80892428-80892447 None:intergenic 60.0%
CAAGCTGCTGCAAGCATGGC+TGG - chr8.2:80893952-80893971 MS.gene39292:CDS 60.0%
CAGGAGGGAGCTGTGGATGT+TGG - chr8.2:80892197-80892216 MS.gene39292:CDS 60.0%
CATCCATGGCTACCCCTGCT+AGG - chr8.2:80893352-80893371 MS.gene39292:CDS 60.0%
CTCCAGCTTGTGCCCTAGCA+GGG + chr8.2:80893368-80893387 None:intergenic 60.0%
GCCATGGATGCACCCATGTG+TGG + chr8.2:80893342-80893361 None:intergenic 60.0%
GGGAGCCATGAAGAGGGAGA+AGG - chr8.2:80892121-80892140 MS.gene39292:CDS 60.0%
GGGGTTGTGCAGCCTACAGT+TGG - chr8.2:80892428-80892447 MS.gene39292:CDS 60.0%
GGTGCATGGCACCCAAGTGA+TGG - chr8.2:80893430-80893449 MS.gene39292:CDS 60.0%
TCCAGCTTGTGCCCTAGCAG+GGG + chr8.2:80893367-80893386 None:intergenic 60.0%
TCGGCTAGTATCTCGGGGTC+TGG - chr8.2:80891981-80892000 MS.gene39292:CDS 60.0%
!! GCCGGGCATTGGTTTAGGTC+AGG - chr8.2:80892178-80892197 MS.gene39292:CDS 60.0%
ACCCCTGCTAGGGCACAAGC+TGG - chr8.2:80893363-80893382 MS.gene39292:CDS 65.0%
CCTCCAGCTTGTGCCCTAGC+AGG + chr8.2:80893369-80893388 None:intergenic 65.0%
CCTGCTAGGGCACAAGCTGG+AGG - chr8.2:80893366-80893385 MS.gene39292:CDS 65.0%
GCTGCTGCAAGCATGGCTGG+TGG - chr8.2:80893955-80893974 MS.gene39292:CDS 65.0%
TGCCCTAGCAGGGGTAGCCA+TGG + chr8.2:80893358-80893377 None:intergenic 65.0%
! AGCATGGCTGGTGGCGCAGA+TGG - chr8.2:80893964-80893983 MS.gene39292:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 80891630 80894227 80891630 ID=MS.gene39292
chr8.2 mRNA 80891630 80894227 80891630 ID=MS.gene39292.t1;Parent=MS.gene39292
chr8.2 exon 80891630 80894227 80891630 ID=MS.gene39292.t1.exon1;Parent=MS.gene39292.t1
chr8.2 CDS 80891630 80894227 80891630 ID=cds.MS.gene39292.t1;Parent=MS.gene39292.t1
Gene Sequence

>MS.gene39292

ATGGATATAGATGAGGATCAAGAGATGGAGAATTTCGGAACGGAGAAAGATTTTGAAGGTGGCCAATGGGTTAATGGTGAATTCTACTTTCGAAAGCGCCGAGAGAAAGCTCGAACTCAAACCAAAGACGATGTTATATATGGAGTTTTTGGTGATTCCGAAGACTACCATGATGATGGGTATTCTAGTAAAAAGCGAAGAAAAGATTTTGGAAGGAAACAGGATCTCACTAAACCTGTGAATTTTGTTTCAACTGGAAATTTTATGCCCGATAAGGATAATGTTGATGAGAATTTGAAAGAACAGGATGATGGTGAAGAAGATAGGCCTGGTTTAGGGTTAGGTTTTGGGTCGGCTAGTATCTCGGGGTCTGGTTTAGGATTTAATGCTGGTCGTGGTGTGAATGGTTCAGATAGAAATGAAAAATCTGATAAGAATGATAATCGGGATGATAAATTTTTGCCTACTGCGTTTGGGAAGATGATTAAGGAGGGAGCCATGAAGAGGGAGAAGGAGAGATTGGAGGAGAAGAAGAAGAAGGGGAAGAAGCCGGGCATTGGTTTAGGTCAGGAGGGAGCTGTGGATGTTGGGAAATTCGAGAGTCATACAAAGGGAATTGGAATGAAGCTGCTTGAGAAGATGGGTTATAAAGGGGGTGGTCTTGGGAAGAATGAGCAGGGTATTTTGAATCCTATTGAGGCAAAGTTGAGGGCTAAAAATTCTGGTCTTGGATTTAACGAATCGAAGGGAACCACTATGCCGTTGCCCGTTTTGCAGACAGAGAAGAAGACTGAACCGGGGGTTGTGCAGCCTACAGTTGGAAGAACACGTTCGTGGTTAAAGCCGCCGAAGAAAAAAAATAAAGAAGAGGAAAAGTATGTAACTGCTAAGGAGTTGTTGGCTAGTAAGCAAGAAGAAGAGTCAGAGGTTGTTCAGAAGATTTATGATATGAGGGGGCCGCAGGTACGAGTTTTAACAGATTTGTCTGATTTGAATGCTGAGGAGAAAGCAAAGGAAAATGATGTCCCAATGCCTGAGCTTCAGTATAACGTAGCACTAATAGTTCGGATAGCTGAATCCAACATCCAAGAGATTGATAGAGATTTGAGGAAAGAGAGGGATATAGCACTTAGCTTGAAAAAAGAAAAGGAGAAGTTGGAAGCTGAGGCAGCGTTTCAAAAGAAGCAGCTCGATAATTATGAAAAGATAATGAGTGTGCTGGACAGAGTTGGAGAAGAGAACACCTTAGGAACATTAACATTGGATTCCCTTGCTCAATGCTTTACGGACATGCACAAAAGATTTGCTGAGGATTATAAGCTGTGTAACTTGTCATGCATTGCTTGCTCATATGCTCTGCCTTTGTTTATCAGAATGTTCCAAGGATGGGATCCTCTTCGAAATCCATCTCATGGTTTGGAGTTGGTATCACAGTGGAAGGCATTGCTTCAAGGAGATGATTGTTTTGATATATGGGACATGTCATCACCTTATACTCAATTGGTTTCAGAGGTTGTATTGCCAGCTGTTAGAGTATCTGGTATCAATACTTGGCATGCACGGGATCCTGAACCAATGCTACGGTTTTTGGAGTCTTGGGAAAAATTGCTTCCTTCTTCAGTTCTTGCTACTATATTAGACAACATAGTCATGCCAAAACTATCAAGTGCAGTGGGTACTTGGGAACCACATCTTGAGACTATTCCTATCCACACATGGGTGCATCCATGGCTACCCCTGCTAGGGCACAAGCTGGAGGTTATCTACCAGACAATTCGTTTCAAATTGAGTACTGTTCTTGGTGCATGGCACCCAAGTGATGGTTCTGCATATGCTATATTGTCCCCTTGGAAGACTGTATTTGATTCTGATAGCTGGCAACAACTTATGCACCGTTTTATCGTACCAAAGCTGAAGGCTGTCTTGCAAGATGACTTCCAAGTGAACCCGGCAAGTCAGAATCTTGATCAATTTTATTGGGTTATGAACTGGGCTTCGGCTATTCCAATTCATCTGATGGTTGACACAATGGAGATCTTCTTTGCCAAGTGGCTTACGGTTTTGTATCGTTGGTTGTGCTCAAATCCTAACTTTGACGAAGTTACAAAATGGTATTTGGGCTGGAAAGAACTTATTCCAAAAGAACTTTTGGCAAATGAAAGTATTCGATACAAGCTCAATTGTGGTCTTGATATGATGAACCAGGCTGTTGAAGGTATGGAGGTTGTGCAACCTGGTTTGAAGGAGAAGATAAGCTATATCAGGGTAAGTGAGCAAAGGAAATTTGAGACTCAGCAGAAAGCAGCAGCCTCTGCTCAACAACAAGCTGCTGCAAGCATGGCTGGTGGCGCAGATGGTGTGAATGAAATGAGCGTGAAAGATCTTATTGAGGCTTATGCTCGGGATAATGGTTTACTGTTCAAACCTAAATCTGGTAGAACGCACAACGGTCATCAAATATATGGGTTTGGCAATGTCAGCATAATAATCGACTCTCTAAATCAAAAGGTCTATGCCCAAAATGAGGAGACATGGTCTTTAGAAACTCTTGAACGATTGCTAGAGTTACATAATAAATCCCTTAGTAAAAGACGCTGA
Protein sequence

>MS.gene39292.t1

MDIDEDQEMENFGTEKDFEGGQWVNGEFYFRKRREKARTQTKDDVIYGVFGDSEDYHDDGYSSKKRRKDFGRKQDLTKPVNFVSTGNFMPDKDNVDENLKEQDDGEEDRPGLGLGFGSASISGSGLGFNAGRGVNGSDRNEKSDKNDNRDDKFLPTAFGKMIKEGAMKREKERLEEKKKKGKKPGIGLGQEGAVDVGKFESHTKGIGMKLLEKMGYKGGGLGKNEQGILNPIEAKLRAKNSGLGFNESKGTTMPLPVLQTEKKTEPGVVQPTVGRTRSWLKPPKKKNKEEEKYVTAKELLASKQEEESEVVQKIYDMRGPQVRVLTDLSDLNAEEKAKENDVPMPELQYNVALIVRIAESNIQEIDRDLRKERDIALSLKKEKEKLEAEAAFQKKQLDNYEKIMSVLDRVGEENTLGTLTLDSLAQCFTDMHKRFAEDYKLCNLSCIACSYALPLFIRMFQGWDPLRNPSHGLELVSQWKALLQGDDCFDIWDMSSPYTQLVSEVVLPAVRVSGINTWHARDPEPMLRFLESWEKLLPSSVLATILDNIVMPKLSSAVGTWEPHLETIPIHTWVHPWLPLLGHKLEVIYQTIRFKLSTVLGAWHPSDGSAYAILSPWKTVFDSDSWQQLMHRFIVPKLKAVLQDDFQVNPASQNLDQFYWVMNWASAIPIHLMVDTMEIFFAKWLTVLYRWLCSNPNFDEVTKWYLGWKELIPKELLANESIRYKLNCGLDMMNQAVEGMEVVQPGLKEKISYIRVSEQRKFETQQKAAASAQQQAAASMAGGADGVNEMSVKDLIEAYARDNGLLFKPKSGRTHNGHQIYGFGNVSIIIDSLNQKVYAQNEETWSLETLERLLELHNKSLSKRR