AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39528

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39528.t1 MTR_4g088225 95.000 560 28 0 1 560 1 560 0.0 1111
MS.gene39528.t1 MTR_4g088225 95.000 560 28 0 1 560 1 560 0.0 1110
MS.gene39528.t1 MTR_1g073740 61.806 576 212 5 5 575 6 578 0.0 744
MS.gene39528.t1 MTR_0011s0020 45.105 572 278 7 20 580 15 561 1.18e-171 503
MS.gene39528.t1 MTR_2g037830 43.881 572 285 7 20 580 15 561 1.05e-170 501
MS.gene39528.t1 MTR_3g005560 43.682 554 278 5 20 564 15 543 1.23e-166 486
MS.gene39528.t1 MTR_3g005560 43.007 572 288 6 20 578 15 561 1.49e-164 485
MS.gene39528.t1 MTR_3g450800 45.351 527 259 6 65 580 4 512 6.49e-163 479
MS.gene39528.t1 MTR_2g037830 45.474 475 237 5 20 491 15 470 1.08e-148 439
MS.gene39528.t1 MTR_3g005560 46.296 432 198 5 20 442 15 421 5.86e-133 395
MS.gene39528.t1 MTR_3g060240 39.122 524 292 11 59 569 52 561 7.09e-116 361
MS.gene39528.t1 MTR_3g060220 38.432 523 296 10 59 569 52 560 1.88e-115 360
MS.gene39528.t1 MTR_3g060220 38.359 524 296 10 59 569 52 561 2.21e-115 360
MS.gene39528.t1 MTR_3g060280 36.691 556 320 10 21 561 21 559 4.48e-113 349
MS.gene39528.t1 MTR_3g060280 36.234 563 327 10 21 568 21 566 1.61e-112 348
MS.gene39528.t1 MTR_3g060280 36.348 564 326 11 21 569 21 566 2.99e-111 349
MS.gene39528.t1 MTR_2g016630 34.639 638 334 11 15 576 172 802 2.59e-110 353
MS.gene39528.t1 MTR_8g086600 34.056 646 343 13 6 576 177 814 8.01e-108 346
MS.gene39528.t1 MTR_4g130510 34.253 616 321 13 24 567 251 854 5.12e-106 338
MS.gene39528.t1 MTR_8g063270 35.582 593 314 12 41 570 6 593 2.14e-105 335
MS.gene39528.t1 MTR_4g130510 33.654 624 330 13 24 575 251 862 6.02e-104 337
MS.gene39528.t1 MTR_1g069605 33.871 620 331 14 24 576 111 718 1.40e-103 333
MS.gene39528.t1 MTR_8g063270 34.797 615 316 14 19 570 206 798 1.41e-103 335
MS.gene39528.t1 MTR_2g087960 34.312 545 321 11 40 559 37 569 2.65e-101 318
MS.gene39528.t1 MTR_2g087950 35.978 542 311 10 58 578 48 574 1.76e-100 322
MS.gene39528.t1 MTR_2g087900 34.133 542 315 12 54 563 46 577 1.09e-99 315
MS.gene39528.t1 MTR_8g092590 33.229 638 324 17 24 570 289 915 1.71e-99 326
MS.gene39528.t1 MTR_2g087960 34.191 544 321 11 40 558 37 568 5.77e-99 317
MS.gene39528.t1 MTR_2g087980 34.142 536 319 11 57 570 45 568 3.83e-98 315
MS.gene39528.t1 MTR_4g130510 31.915 658 330 14 24 575 251 896 2.50e-97 320
MS.gene39528.t1 MTR_2g087900 34.328 536 310 12 54 557 46 571 2.95e-97 313
MS.gene39528.t1 MTR_4g050000 33.654 520 321 10 57 558 47 560 1.33e-96 311
MS.gene39528.t1 MTR_7g106680 32.643 628 320 15 24 562 229 842 5.30e-95 313
MS.gene39528.t1 MTR_3g060280 36.080 449 252 11 21 451 21 452 3.46e-83 267
MS.gene39528.t1 MTR_4g077910 30.925 692 328 17 24 578 289 967 2.11e-82 280
MS.gene39528.t1 MTR_5g029190 30.100 701 333 17 14 578 258 937 4.13e-82 279
MS.gene39528.t1 MTR_7g109200 30.781 679 317 18 15 552 304 970 4.03e-81 276
MS.gene39528.t1 MTR_1g039445 29.709 653 326 13 24 552 261 904 2.33e-79 271
MS.gene39528.t1 MTR_1g039480 30.149 670 315 16 24 552 275 932 3.94e-78 268
MS.gene39528.t1 MTR_2g087900 34.014 441 248 12 53 459 45 476 4.58e-75 247
MS.gene39528.t1 MTR_2g438220 28.399 662 330 17 24 552 175 825 5.87e-73 252
MS.gene39528.t1 MTR_1g098550 36.939 379 212 8 24 382 291 662 7.02e-72 250
MS.gene39528.t1 MTR_1g098550 37.705 183 112 2 390 570 734 916 7.62e-31 129
MS.gene39528.t1 MTR_1g098550 36.939 379 212 8 24 382 287 658 9.36e-72 249
MS.gene39528.t1 MTR_1g098550 37.705 183 112 2 390 570 730 912 8.62e-31 128
MS.gene39528.t1 MTR_4g130510 36.364 385 212 7 24 385 251 625 1.80e-71 244
MS.gene39528.t1 MTR_3g030040 37.830 341 191 4 59 379 300 639 6.20e-71 247
MS.gene39528.t1 MTR_3g030040 36.066 183 115 2 390 570 714 896 6.09e-28 120
MS.gene39528.t1 MTR_2g035780 36.412 379 208 9 24 379 222 590 7.61e-71 246
MS.gene39528.t1 MTR_2g035780 39.344 183 109 2 396 576 687 869 1.44e-30 128
MS.gene39528.t1 MTR_3g107520 36.702 376 211 7 24 379 281 649 2.28e-69 243
MS.gene39528.t1 MTR_3g107520 42.361 144 82 1 419 561 752 895 2.92e-28 120
MS.gene39528.t1 MTR_8g037260 37.318 343 194 4 59 381 300 641 5.61e-69 241
MS.gene39528.t1 MTR_8g037260 37.288 177 109 2 396 570 720 896 1.03e-28 122
MS.gene39528.t1 MTR_7g116230 33.529 510 239 14 59 470 174 681 1.06e-67 236
MS.gene39528.t1 MTR_3g007770 35.620 379 217 7 24 382 238 609 1.28e-67 238
MS.gene39528.t1 MTR_3g007770 34.826 201 123 5 376 570 666 864 7.10e-26 113
MS.gene39528.t1 MTR_2g087900 36.774 310 176 6 53 349 45 347 1.47e-63 213
MS.gene39528.t1 MTR_3g091270 32.281 285 148 7 99 379 107 350 4.39e-37 144
MS.gene39528.t1 MTR_2g087900 36.310 168 100 3 53 216 45 209 5.43e-30 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39528.t1 AT4G24000 40.391 562 298 10 10 561 11 545 3.92e-134 408
MS.gene39528.t1 AT4G24010 39.184 564 309 8 10 561 14 555 3.48e-129 396
MS.gene39528.t1 AT4G23990 39.076 563 313 7 6 558 29 571 3.17e-127 391
MS.gene39528.t1 AT1G55850 36.346 520 299 6 57 569 64 558 1.60e-106 337
MS.gene39528.t1 AT4G18780 34.380 637 322 12 24 576 184 808 3.41e-106 342
MS.gene39528.t1 AT2G32540 35.283 530 300 12 59 558 51 567 1.26e-103 330
MS.gene39528.t1 AT5G17420 34.576 590 309 10 59 576 267 851 3.13e-103 335
MS.gene39528.t1 AT2G32530 35.135 555 313 16 34 558 30 567 7.99e-102 325
MS.gene39528.t1 AT4G15320 34.720 553 306 15 37 558 36 564 5.93e-99 317
MS.gene39528.t1 AT4G15320 34.720 553 306 15 37 558 36 564 6.69e-99 317
MS.gene39528.t1 AT5G09870 32.348 643 333 16 24 576 264 894 1.05e-97 321
MS.gene39528.t1 AT4G15320 34.043 564 310 16 37 558 36 579 4.90e-97 313
MS.gene39528.t1 AT5G64740 32.609 644 333 16 24 576 276 909 7.88e-97 318
MS.gene39528.t1 AT2G25540 32.565 651 341 18 3 565 233 873 7.14e-96 316
MS.gene39528.t1 AT2G32620 34.652 531 301 13 59 558 51 566 1.58e-95 304
MS.gene39528.t1 AT2G32620 34.275 531 303 13 59 558 51 566 3.74e-94 305
MS.gene39528.t1 AT2G32620 36.287 474 256 13 59 501 51 509 9.66e-93 295
MS.gene39528.t1 AT4G15290 34.270 534 298 16 59 558 51 565 2.54e-92 300
MS.gene39528.t1 AT4G15320 32.053 599 306 16 37 558 36 610 1.10e-90 296
MS.gene39528.t1 AT2G32610 33.704 540 295 17 59 558 51 567 5.94e-89 291
MS.gene39528.t1 AT4G24000 40.860 372 194 5 196 561 2 353 2.12e-87 281
MS.gene39528.t1 AT4G15320 29.937 638 311 18 37 558 36 653 1.31e-83 278
MS.gene39528.t1 AT2G32620 33.814 485 276 12 104 558 1 470 4.85e-82 270
MS.gene39528.t1 AT1G32180 28.341 681 339 15 12 552 110 781 1.07e-80 273
MS.gene39528.t1 AT1G32180 28.341 681 339 15 12 552 110 781 1.07e-80 273
MS.gene39528.t1 AT4G38190 30.543 645 323 15 24 552 272 907 1.26e-80 275
MS.gene39528.t1 AT4G23990 40.541 370 199 4 196 558 2 357 1.92e-80 263
MS.gene39528.t1 AT1G02730 29.394 677 318 16 24 552 318 982 8.59e-79 270
MS.gene39528.t1 AT3G03050 28.571 665 327 13 24 552 294 946 4.59e-77 265
MS.gene39528.t1 AT2G33100 28.593 668 327 17 24 552 183 839 5.75e-76 261
MS.gene39528.t1 AT2G33100 28.593 668 327 17 24 552 183 839 5.75e-76 261
MS.gene39528.t1 AT4G39350 36.649 382 209 7 24 382 277 648 1.94e-71 249
MS.gene39528.t1 AT4G39350 37.430 179 110 2 390 566 720 898 2.23e-28 121
MS.gene39528.t1 AT2G21770 36.364 396 218 8 8 382 271 653 3.71e-71 248
MS.gene39528.t1 AT2G21770 36.126 191 116 3 380 566 714 902 1.11e-28 122
MS.gene39528.t1 AT5G05170 36.170 376 213 5 24 379 259 627 1.24e-70 246
MS.gene39528.t1 AT5G05170 35.519 183 116 2 390 570 701 883 1.58e-27 118
MS.gene39528.t1 AT5G44030 35.884 379 210 9 24 379 215 583 1.93e-69 243
MS.gene39528.t1 AT5G44030 39.881 168 99 2 396 561 690 857 1.18e-29 125
MS.gene39528.t1 AT5G44030 35.884 379 210 9 24 379 244 612 2.25e-69 243
MS.gene39528.t1 AT5G44030 39.881 168 99 2 396 561 719 886 1.27e-29 125
MS.gene39528.t1 AT4G32410 35.904 376 214 7 24 379 275 643 2.39e-66 234
MS.gene39528.t1 AT4G32410 39.860 143 85 1 420 561 747 889 3.30e-28 120
MS.gene39528.t1 AT5G44030 38.689 305 167 6 91 379 4 304 5.11e-65 227
MS.gene39528.t1 AT5G44030 39.881 168 99 2 396 561 411 578 1.05e-29 125
MS.gene39528.t1 AT5G16910 32.326 430 209 11 24 379 297 718 9.17e-57 207
MS.gene39528.t1 AT5G16910 34.586 133 86 1 420 552 815 946 1.04e-17 87.8

Find 144 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTATTGTTTGCCTCTT+TGG 0.064775 4.2:+23087020 MS.gene39528:CDS
CCCTCATATATGGGCCTTTA+AGG 0.070894 4.2:+23086951 MS.gene39528:CDS
CTCTCCTTCATTTGGTTCCT+TGG 0.172567 4.2:+23084961 MS.gene39528:CDS
CTGCAACTTCGAGAATATTT+TGG 0.180704 4.2:+23086515 MS.gene39528:CDS
TAGGCTTCTTGTTCTATTAC+AGG 0.204037 4.2:+23084857 MS.gene39528:CDS
TCAAGAGATGGTATTACTTT+TGG 0.207697 4.2:+23085524 MS.gene39528:CDS
GATATGAAACTGGCACTAAA+TGG 0.224428 4.2:+23086642 MS.gene39528:CDS
TGGAGTAGTGGCATCCTTAA+AGG 0.244360 4.2:-23086965 None:intergenic
ATGGCATATCGAGCTGAATT+TGG 0.256825 4.2:-23086067 None:intergenic
TGATGATAAGCAACAACTTT+TGG 0.260318 4.2:-23084801 None:intergenic
CCTCAGTTCTGTCTACTAAA+TGG 0.263774 4.2:+23087058 MS.gene39528:CDS
TCATCCTCTGGCAATCTCTC+TGG 0.273425 4.2:-23085024 None:intergenic
CAAGGGATGGACGGGCTTAA+TGG 0.283109 4.2:+23086289 MS.gene39528:CDS
TTCTCCCTACATCCTAGTTC+TGG 0.315742 4.2:+23086021 MS.gene39528:CDS
TCTAAAGTGGGTTCCTTGAT+TGG 0.317793 4.2:-23085087 None:intergenic
AAATCATTCTCTCCTTCATT+TGG 0.335597 4.2:+23084953 MS.gene39528:CDS
GGCAGAGAAGCAAAAGATTA+AGG 0.344678 4.2:+23085350 MS.gene39528:CDS
GACAAGGAGGATGATATCTT+TGG 0.372812 4.2:-23086106 None:intergenic
TTTAATATCTGTGTTACCTT+AGG 0.374672 4.2:-23087094 None:intergenic
TACTCTGGTTTGTTCGAAAA+CGG 0.388375 4.2:+23086911 MS.gene39528:CDS
GCTCGAAGAACCTCACTTGT+TGG 0.395209 4.2:+23086610 MS.gene39528:CDS
AATCAAGGAACCCACTTTAG+AGG 0.396093 4.2:+23085089 MS.gene39528:CDS
ATATGAAACTGGCACTAAAT+GGG 0.398753 4.2:+23086643 MS.gene39528:CDS
CTTGGGAGTTTGCAAGGTGG+TGG 0.404254 4.2:+23085223 MS.gene39528:CDS
AGTTGTTGCTTATCATCAAT+AGG 0.407981 4.2:+23084806 MS.gene39528:CDS
CCAAGGAACTGTGGCCTAGA+TGG 0.410757 4.2:-23086839 None:intergenic
ACTCTGGTTTGTTCGAAAAC+GGG 0.411001 4.2:+23086912 MS.gene39528:CDS
TCCTTAAAGGCCCATATATG+AGG 0.417596 4.2:-23086952 None:intergenic
GCATTGTAACGGATGGAATT+CGG 0.422318 4.2:+23086805 MS.gene39528:CDS
GCTTCTTGTAGATATGAAAC+TGG 0.425990 4.2:+23086632 MS.gene39528:CDS
CATGTGTATCTTTCAGATGA+TGG 0.428039 4.2:+23085165 MS.gene39528:CDS
CTGTGTTACCTTAGGATACA+AGG 0.430250 4.2:-23087086 None:intergenic
AAAGCAGAAAAGTAGACCTT+GGG 0.442611 4.2:-23085285 None:intergenic
TGAGGGCTCCAGCTTTGAAA+TGG 0.444970 4.2:-23085866 None:intergenic
CATCCTCTGGCAATCTCTCT+GGG 0.449447 4.2:-23085023 None:intergenic
TACTAATCCAAGGCACTAGA+TGG 0.455870 4.2:+23086888 MS.gene39528:CDS
TCCTTGGCCAAGCTTATCGC+TGG 0.456621 4.2:+23084977 MS.gene39528:CDS
GGTGGCTTCCCTTCTGCAGA+AGG 0.468636 4.2:+23085241 MS.gene39528:CDS
CTCCTTCATTCCATGGCTCT+AGG 0.469797 4.2:+23084838 MS.gene39528:CDS
TGGGAAGACATAACGTGAAA+CGG 0.477193 4.2:-23085004 None:intergenic
AGGCTTCTTGTTCTATTACA+GGG 0.479759 4.2:+23084858 MS.gene39528:CDS
CAATTTGCAGAGAAAGTATG+AGG 0.482474 4.2:+23085457 MS.gene39528:intron
AGTCCCCACCATTTCAAAGC+TGG 0.483676 4.2:+23085858 MS.gene39528:CDS
GGGAAGACATAACGTGAAAC+GGG 0.483928 4.2:-23085003 None:intergenic
CAAAGAGGCAAACAATAAAG+AGG 0.484844 4.2:-23087019 None:intergenic
GGCTCCAGCTTTGAAATGGT+GGG 0.486191 4.2:-23085862 None:intergenic
GCAGGGAGCTTGTCATCCTC+TGG 0.486915 4.2:-23085036 None:intergenic
CCATCTAGGCCACAGTTCCT+TGG 0.487196 4.2:+23086839 MS.gene39528:CDS
ATCTGAGATTGAAGTGAAAA+CGG 0.488569 4.2:-23087124 None:intergenic
ACACATGCTCCTTCATTCCA+TGG 0.492247 4.2:+23084831 MS.gene39528:CDS
GTATGGTGTGAGGAAGGCTT+GGG 0.495077 4.2:+23085206 MS.gene39528:CDS
GCTCTGCAAAACACAGACTT+TGG 0.495249 4.2:-23086985 None:intergenic
AGTATTCATCACCTCTAAAG+TGG 0.497726 4.2:-23085100 None:intergenic
AAGCATGTGCCTGACAATAC+AGG 0.500887 4.2:-23086313 None:intergenic
TGTATGGTGTGAGGAAGGCT+TGG 0.500918 4.2:+23085205 MS.gene39528:CDS
CAGAGTACCATCTAGTGCCT+TGG 0.501479 4.2:-23086895 None:intergenic
CAAGGAGCCATGGTAACAAA+TGG 0.502268 4.2:-23084918 None:intergenic
TATTCTGTGCCTTCTGCAGA+AGG 0.503375 4.2:-23085250 None:intergenic
AGCCTAGAGCCATGGAATGA+AGG 0.506111 4.2:-23084840 None:intergenic
GGATTTATCTTGCATTGTAA+CGG 0.506211 4.2:+23086794 MS.gene39528:CDS
CTTAATGGACCTGTATTGTC+AGG 0.509961 4.2:+23086304 MS.gene39528:CDS
TTATCTTGCATTGTAACGGA+TGG 0.511997 4.2:+23086798 MS.gene39528:CDS
TGCCAGGAGTAGTGTTTACA+TGG 0.512757 4.2:+23085329 MS.gene39528:CDS
TGCCATGTAAACACTACTCC+TGG 0.515527 4.2:-23085331 None:intergenic
GTAGTCGAAGATTTCCTGAC+TGG 0.518872 4.2:+23086773 MS.gene39528:CDS
ACAATCCAGAACTAGGATGT+AGG 0.519220 4.2:-23086026 None:intergenic
TACAATGGCAAGGGATGGAC+GGG 0.522235 4.2:+23086281 MS.gene39528:CDS
AATGCAAGATAAATCCAGTC+AGG 0.527019 4.2:-23086787 None:intergenic
TGGAATACCCTTGTATCCTA+AGG 0.531703 4.2:+23087078 MS.gene39528:CDS
TATTGAGAGGAAGAGTCCCT+TGG 0.531960 4.2:-23084768 None:intergenic
GAACAAGAAGCCTAGAGCCA+TGG 0.535046 4.2:-23084848 None:intergenic
TTGAACAACTTCAGCTACAA+TGG 0.536811 4.2:+23086266 MS.gene39528:intron
ATTGAGAGGAAGAGTCCCTT+GGG 0.539211 4.2:-23084767 None:intergenic
GGGCTCCAGCTTTGAAATGG+TGG 0.541590 4.2:-23085863 None:intergenic
CAAGGCACTAGATGGTACTC+TGG 0.543521 4.2:+23086896 MS.gene39528:CDS
CAAAGCAGAAAAGTAGACCT+TGG 0.544118 4.2:-23085286 None:intergenic
CAATCCAGAACTAGGATGTA+GGG 0.544829 4.2:-23086025 None:intergenic
ATGAAAAGGGTATCATTGTA+CGG 0.545021 4.2:+23086340 MS.gene39528:CDS
CTCACACCATACAGAGTCAT+GGG 0.545146 4.2:-23085195 None:intergenic
ACATGTCACAATCCAGAACT+AGG 0.545632 4.2:-23086033 None:intergenic
GGAAGGCTTGGGAGTTTGCA+AGG 0.546262 4.2:+23085217 MS.gene39528:CDS
TACGGAAATCAAGCGAATGA+AGG 0.548147 4.2:+23086358 MS.gene39528:CDS
CGGGACGCCAGCGATAAGCT+TGG 0.548345 4.2:-23084984 None:intergenic
ATGTGTATCTTTCAGATGAT+GGG 0.551013 4.2:+23085166 MS.gene39528:CDS
CTACAATGGCAAGGGATGGA+CGG 0.551068 4.2:+23086280 MS.gene39528:CDS
CTCGAAACATAGACAAGTTG+TGG 0.554608 4.2:-23085819 None:intergenic
AGGATGATATCTTTGGATCA+AGG 0.554905 4.2:-23086099 None:intergenic
AATATTCTCGAAGTTGCAGC+AGG 0.557617 4.2:-23086511 None:intergenic
CATATGAACACATCAACAGC+AGG 0.558578 4.2:-23085054 None:intergenic
TCGAGCAATGTATTCCATCC+CGG 0.559216 4.2:-23086593 None:intergenic
ATGGCCGTACAAGGACATTG+AGG 0.561723 4.2:-23085884 None:intergenic
TTGAATGATGTACTAATCCA+AGG 0.561797 4.2:+23086878 MS.gene39528:CDS
GACTCTGTATGGTGTGAGGA+AGG 0.567745 4.2:+23085200 MS.gene39528:CDS
TGGCCGTACAAGGACATTGA+GGG 0.568429 4.2:-23085883 None:intergenic
AGATCATTCATCAGTCATTG+AGG 0.572393 4.2:+23085547 MS.gene39528:CDS
CTAATGTTGTGAAATTTCTG+AGG 0.573072 4.2:-23086142 None:intergenic
TTGGCCAAGGAACCAAATGA+AGG 0.575063 4.2:-23084965 None:intergenic
CCTTAAAGGCCCATATATGA+GGG 0.575643 4.2:-23086951 None:intergenic
AAAGAGGCAAACAATAAAGA+GGG 0.577140 4.2:-23087018 None:intergenic
ATGCACTGCAGATCCAATCA+AGG 0.579241 4.2:+23085074 MS.gene39528:CDS
CCTCACACCATACAGAGTCA+TGG 0.580155 4.2:-23085196 None:intergenic
AGTAATACCATCTCTTGAGA+AGG 0.580252 4.2:-23085519 None:intergenic
AGAAGATATCATTGATGATG+TGG 0.580750 4.2:+23085782 MS.gene39528:CDS
GATGAGGCCTTCTCAAGAGA+TGG 0.584597 4.2:+23085512 MS.gene39528:CDS
GAGATTGAAGTGAAAACGGT+AGG 0.586713 4.2:-23087120 None:intergenic
AAACACAGACTTTGGAGTAG+TGG 0.589371 4.2:-23086977 None:intergenic
GCTCCAGCTTTGAAATGGTG+GGG 0.590422 4.2:-23085861 None:intergenic
GGGGAAGCCATTTGTTACCA+TGG 0.592373 4.2:+23084911 MS.gene39528:CDS
TTGAGGATAATCTAGTGCCA+TGG 0.605599 4.2:-23085133 None:intergenic
CTTAAAGGCCCATATATGAG+GGG 0.605824 4.2:-23086950 None:intergenic
CAACTTCAGCTACAATGGCA+AGG 0.607668 4.2:+23086271 MS.gene39528:intron
TGGACATGGCAGGTATTGAG+AGG 0.609066 4.2:-23084781 None:intergenic
GCCAGCGATAAGCTTGGCCA+AGG 0.610444 4.2:-23084978 None:intergenic
TAGACAGAACTGAGGGATGG+TGG 0.613347 4.2:-23087050 None:intergenic
CATTTAGTAGACAGAACTGA+GGG 0.613491 4.2:-23087057 None:intergenic
TCAGCTACAATGGCAAGGGA+TGG 0.617186 4.2:+23086276 MS.gene39528:intron
TATGAAACTGGCACTAAATG+GGG 0.620691 4.2:+23086644 MS.gene39528:CDS
TACACATGAATCTTCTCTTG+AGG 0.623487 4.2:-23085150 None:intergenic
AGAGACATTCAGAAAAGATG+AGG 0.623555 4.2:+23085496 MS.gene39528:CDS
TGTGTTACCTTAGGATACAA+GGG 0.624805 4.2:-23087085 None:intergenic
TTTCCAAGACCAAGAAAACA+GGG 0.624831 4.2:+23084891 MS.gene39528:CDS
AACTTCAGCTACAATGGCAA+GGG 0.624923 4.2:+23086272 MS.gene39528:intron
GTATTCATCACCTCTAAAGT+GGG 0.632654 4.2:-23085099 None:intergenic
GGAGAAATGGAGGTAACCCA+AGG 0.634770 4.2:+23084751 None:intergenic
ATTCTGTGCCTTCTGCAGAA+GGG 0.636688 4.2:-23085249 None:intergenic
TGGATCAAGGTGAAAACACA+TGG 0.655681 4.2:-23086086 None:intergenic
CTACAAGAAGCCAACAAGTG+AGG 0.656944 4.2:-23086620 None:intergenic
AATTTGTCGTAGCTGTACCA+AGG 0.662023 4.2:-23086856 None:intergenic
TAGTAGACAGAACTGAGGGA+TGG 0.662046 4.2:-23087053 None:intergenic
GAGAAATGGAGGTAACCCAA+GGG 0.667623 4.2:+23084752 None:intergenic
AGGAAATTGAACAAAAGACA+AGG 0.668900 4.2:-23086122 None:intergenic
TTAAAGGCCCATATATGAGG+GGG 0.684129 4.2:-23086949 None:intergenic
CCATTTAGTAGACAGAACTG+AGG 0.684834 4.2:-23087058 None:intergenic
CCATGACTCTGTATGGTGTG+AGG 0.687665 4.2:+23085196 MS.gene39528:CDS
GTAGCTGTACCAAGGAACTG+TGG 0.688487 4.2:-23086848 None:intergenic
CTTCCCAGAGAGATTGCCAG+AGG 0.691580 4.2:+23085020 MS.gene39528:CDS
TCACACCATACAGAGTCATG+GGG 0.693106 4.2:-23085194 None:intergenic
ATGGTGGCAAAACACCAAAG+AGG 0.696442 4.2:-23087034 None:intergenic
AGGCTTGGGAGTTTGCAAGG+TGG 0.698000 4.2:+23085220 MS.gene39528:CDS
TTCCAAGACCAAGAAAACAG+GGG 0.702380 4.2:+23084892 MS.gene39528:CDS
AAATTGAACAAAAGACAAGG+AGG 0.720972 4.2:-23086119 None:intergenic
AAGCAGAAAAGTAGACCTTG+GGG 0.722011 4.2:-23085284 None:intergenic
ATATGAACACATCAACAGCA+GGG 0.739860 4.2:-23085053 None:intergenic
CACACCATACAGAGTCATGG+GGG 0.754927 4.2:-23085193 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTTAGTTCATAACATAA+AGG - chr4.2:23086454-23086473 None:intergenic 20.0%
!!! CAAGTTTTGTATATATACTT+TGG - chr4.2:23085921-23085940 None:intergenic 20.0%
! TTTAATATCTGTGTTACCTT+AGG - chr4.2:23087097-23087116 None:intergenic 25.0%
!! ACATTTTATCTGAATTTTGC+AGG + chr4.2:23085752-23085771 MS.gene39528:intron 25.0%
!! CACATGCTTTTATATGAAAA+GGG + chr4.2:23086327-23086346 MS.gene39528:CDS 25.0%
!! GTATAATTTTGAACTGTTTC+AGG + chr4.2:23086730-23086749 MS.gene39528:intron 25.0%
!! TATATACTTTGGAAGATAGA+AGG - chr4.2:23085910-23085929 None:intergenic 25.0%
!!! CTGTTCTGAGTTTTAAATTT+AGG + chr4.2:23086479-23086498 MS.gene39528:intron 25.0%
!!! TCTGAGTTTTAAATTTAGGA+GGG + chr4.2:23086483-23086502 MS.gene39528:intron 25.0%
!!! TTCTGAGTTTTAAATTTAGG+AGG + chr4.2:23086482-23086501 MS.gene39528:intron 25.0%
AAACTCAAATTATTGCTGTC+AGG - chr4.2:23085627-23085646 None:intergenic 30.0%
AAAGAGGCAAACAATAAAGA+GGG - chr4.2:23087021-23087040 None:intergenic 30.0%
AAATCATTCTCTCCTTCATT+TGG + chr4.2:23084953-23084972 MS.gene39528:CDS 30.0%
AAATTGAACAAAAGACAAGG+AGG - chr4.2:23086122-23086141 None:intergenic 30.0%
ACTGCAAAGATTTAATCTCA+AGG - chr4.2:23086231-23086250 None:intergenic 30.0%
AGGAAATTGAACAAAAGACA+AGG - chr4.2:23086125-23086144 None:intergenic 30.0%
ATATGAAACTGGCACTAAAT+GGG + chr4.2:23086643-23086662 MS.gene39528:CDS 30.0%
ATGTATGTTCTGCAATCTAA+AGG - chr4.2:23085407-23085426 None:intergenic 30.0%
ATGTGTATCTTTCAGATGAT+GGG + chr4.2:23085166-23085185 MS.gene39528:CDS 30.0%
CTAATGTTGTGAAATTTCTG+AGG - chr4.2:23086145-23086164 None:intergenic 30.0%
GGATTTATCTTGCATTGTAA+CGG + chr4.2:23086794-23086813 MS.gene39528:CDS 30.0%
TTGAATGATGTACTAATCCA+AGG + chr4.2:23086878-23086897 MS.gene39528:CDS 30.0%
! AGTTGTTGCTTATCATCAAT+AGG + chr4.2:23084806-23084825 MS.gene39528:CDS 30.0%
! ATCTGAGATTGAAGTGAAAA+CGG - chr4.2:23087127-23087146 None:intergenic 30.0%
! GAATACTGTTTTATCATCCA+TGG + chr4.2:23085116-23085135 MS.gene39528:CDS 30.0%
! GCACATGCTTTTATATGAAA+AGG + chr4.2:23086326-23086345 MS.gene39528:CDS 30.0%
! GTGATAATAATGATTTTGCC+AGG + chr4.2:23085313-23085332 MS.gene39528:CDS 30.0%
! TCAAGAGATGGTATTACTTT+TGG + chr4.2:23085524-23085543 MS.gene39528:CDS 30.0%
! TGATGATAAGCAACAACTTT+TGG - chr4.2:23084804-23084823 None:intergenic 30.0%
!! AATTTTGAACTGTTTCAGGT+AGG + chr4.2:23086734-23086753 MS.gene39528:intron 30.0%
!! AGAAGATATCATTGATGATG+TGG + chr4.2:23085782-23085801 MS.gene39528:CDS 30.0%
!! ATGAAAAGGGTATCATTGTA+CGG + chr4.2:23086340-23086359 MS.gene39528:CDS 30.0%
!! TGATTTCTGAAGCAAAAACA+AGG - chr4.2:23084939-23084958 None:intergenic 30.0%
!!! CTACACAAGAGTTTTTTTTC+CGG + chr4.2:23086574-23086593 MS.gene39528:CDS 30.0%
!!! TACACAAGAGTTTTTTTTCC+GGG + chr4.2:23086575-23086594 MS.gene39528:CDS 30.0%
AAAGCAGAAAAGTAGACCTT+GGG - chr4.2:23085288-23085307 None:intergenic 35.0%
AATGCAAGATAAATCCAGTC+AGG - chr4.2:23086790-23086809 None:intergenic 35.0%
AGAGACATTCAGAAAAGATG+AGG + chr4.2:23085496-23085515 MS.gene39528:CDS 35.0%
AGATCATTCATCAGTCATTG+AGG + chr4.2:23085547-23085566 MS.gene39528:CDS 35.0%
AGGATGATATCTTTGGATCA+AGG - chr4.2:23086102-23086121 None:intergenic 35.0%
AGGCTTCTTGTTCTATTACA+GGG + chr4.2:23084858-23084877 MS.gene39528:CDS 35.0%
AGTAATACCATCTCTTGAGA+AGG - chr4.2:23085522-23085541 None:intergenic 35.0%
ATATGAACACATCAACAGCA+GGG - chr4.2:23085056-23085075 None:intergenic 35.0%
CAAAGAGGCAAACAATAAAG+AGG - chr4.2:23087022-23087041 None:intergenic 35.0%
CATGTGTATCTTTCAGATGA+TGG + chr4.2:23085165-23085184 MS.gene39528:CDS 35.0%
CATTTAGTAGACAGAACTGA+GGG - chr4.2:23087060-23087079 None:intergenic 35.0%
CTCTTTATTGTTTGCCTCTT+TGG + chr4.2:23087020-23087039 MS.gene39528:CDS 35.0%
GATATGAAACTGGCACTAAA+TGG + chr4.2:23086642-23086661 MS.gene39528:CDS 35.0%
GCTTCTTGTAGATATGAAAC+TGG + chr4.2:23086632-23086651 MS.gene39528:CDS 35.0%
TACACATGAATCTTCTCTTG+AGG - chr4.2:23085153-23085172 None:intergenic 35.0%
TAGGCTTCTTGTTCTATTAC+AGG + chr4.2:23084857-23084876 MS.gene39528:CDS 35.0%
TATGAAACTGGCACTAAATG+GGG + chr4.2:23086644-23086663 MS.gene39528:CDS 35.0%
TGTCTAGTATAAAGTGCAGA+TGG - chr4.2:23085733-23085752 None:intergenic 35.0%
TGTGTTACCTTAGGATACAA+GGG - chr4.2:23087088-23087107 None:intergenic 35.0%
TTGAACAACTTCAGCTACAA+TGG + chr4.2:23086266-23086285 MS.gene39528:intron 35.0%
TTTCCAAGACCAAGAAAACA+GGG + chr4.2:23084891-23084910 MS.gene39528:CDS 35.0%
! AGTATTCATCACCTCTAAAG+TGG - chr4.2:23085103-23085122 None:intergenic 35.0%
! CAATTTGCAGAGAAAGTATG+AGG + chr4.2:23085457-23085476 MS.gene39528:intron 35.0%
! CTGCAACTTCGAGAATATTT+TGG + chr4.2:23086515-23086534 MS.gene39528:CDS 35.0%
! GAAGGCACAGAATAAAAAAC+AGG + chr4.2:23085259-23085278 MS.gene39528:CDS 35.0%
! TAAGCAACAACTTTTGGACA+TGG - chr4.2:23084798-23084817 None:intergenic 35.0%
! TACTTTGGAAGATAGAAGGA+TGG - chr4.2:23085906-23085925 None:intergenic 35.0%
! TGTTTTACAAGCAACCTTGT+GGG - chr4.2:23086390-23086409 None:intergenic 35.0%
! TTATCTTGCATTGTAACGGA+TGG + chr4.2:23086798-23086817 MS.gene39528:CDS 35.0%
! TTTTCCAAGACCAAGAAAAC+AGG + chr4.2:23084890-23084909 MS.gene39528:CDS 35.0%
!! GTATTCATCACCTCTAAAGT+GGG - chr4.2:23085102-23085121 None:intergenic 35.0%
!! TACTCTGGTTTGTTCGAAAA+CGG + chr4.2:23086911-23086930 MS.gene39528:CDS 35.0%
AACTTCAGCTACAATGGCAA+GGG + chr4.2:23086272-23086291 MS.gene39528:intron 40.0%
AAGCAGAAAAGTAGACCTTG+GGG - chr4.2:23085287-23085306 None:intergenic 40.0%
AATAAAAAACAGGTGCCCCA+AGG + chr4.2:23085269-23085288 MS.gene39528:CDS 40.0%
AATATTCTCGAAGTTGCAGC+AGG - chr4.2:23086514-23086533 None:intergenic 40.0%
AATCAAGGAACCCACTTTAG+AGG + chr4.2:23085089-23085108 MS.gene39528:CDS 40.0%
AATTTGTCGTAGCTGTACCA+AGG - chr4.2:23086859-23086878 None:intergenic 40.0%
ACAATCCAGAACTAGGATGT+AGG - chr4.2:23086029-23086048 None:intergenic 40.0%
ACATGTCACAATCCAGAACT+AGG - chr4.2:23086036-23086055 None:intergenic 40.0%
ATGGCATATCGAGCTGAATT+TGG - chr4.2:23086070-23086089 None:intergenic 40.0%
CAAAGCAGAAAAGTAGACCT+TGG - chr4.2:23085289-23085308 None:intergenic 40.0%
CAATCCAGAACTAGGATGTA+GGG - chr4.2:23086028-23086047 None:intergenic 40.0%
CATATGAACACATCAACAGC+AGG - chr4.2:23085057-23085076 None:intergenic 40.0%
CCATTTAGTAGACAGAACTG+AGG - chr4.2:23087061-23087080 None:intergenic 40.0%
CCTCAGTTCTGTCTACTAAA+TGG + chr4.2:23087058-23087077 MS.gene39528:CDS 40.0%
CCTTAAAGGCCCATATATGA+GGG - chr4.2:23086954-23086973 None:intergenic 40.0%
CTCGAAACATAGACAAGTTG+TGG - chr4.2:23085822-23085841 None:intergenic 40.0%
CTGTGTTACCTTAGGATACA+AGG - chr4.2:23087089-23087108 None:intergenic 40.0%
CTTAAAGGCCCATATATGAG+GGG - chr4.2:23086953-23086972 None:intergenic 40.0%
GACAAGGAGGATGATATCTT+TGG - chr4.2:23086109-23086128 None:intergenic 40.0%
GAGATTGAAGTGAAAACGGT+AGG - chr4.2:23087123-23087142 None:intergenic 40.0%
GGCAGAGAAGCAAAAGATTA+AGG + chr4.2:23085350-23085369 MS.gene39528:CDS 40.0%
TACGGAAATCAAGCGAATGA+AGG + chr4.2:23086358-23086377 MS.gene39528:CDS 40.0%
TCCTTAAAGGCCCATATATG+AGG - chr4.2:23086955-23086974 None:intergenic 40.0%
TGGAATACCCTTGTATCCTA+AGG + chr4.2:23087078-23087097 MS.gene39528:CDS 40.0%
TGGATCAAGGTGAAAACACA+TGG - chr4.2:23086089-23086108 None:intergenic 40.0%
TGGGAAGACATAACGTGAAA+CGG - chr4.2:23085007-23085026 None:intergenic 40.0%
TTAAAGGCCCATATATGAGG+GGG - chr4.2:23086952-23086971 None:intergenic 40.0%
TTCCAAGACCAAGAAAACAG+GGG + chr4.2:23084892-23084911 MS.gene39528:CDS 40.0%
TTGAGGATAATCTAGTGCCA+TGG - chr4.2:23085136-23085155 None:intergenic 40.0%
! AAGTTTTGCCCCCTCATATA+TGG + chr4.2:23086941-23086960 MS.gene39528:CDS 40.0%
! AGTTTTGCCCCCTCATATAT+GGG + chr4.2:23086942-23086961 MS.gene39528:CDS 40.0%
! CTTAATGGACCTGTATTGTC+AGG + chr4.2:23086304-23086323 MS.gene39528:CDS 40.0%
! GTGTTTTACAAGCAACCTTG+TGG - chr4.2:23086391-23086410 None:intergenic 40.0%
! TACTAATCCAAGGCACTAGA+TGG + chr4.2:23086888-23086907 MS.gene39528:CDS 40.0%
! TCTAAAGTGGGTTCCTTGAT+TGG - chr4.2:23085090-23085109 None:intergenic 40.0%
!! AAACACAGACTTTGGAGTAG+TGG - chr4.2:23086980-23086999 None:intergenic 40.0%
!! AATGAAGGTATTGACCCACA+AGG + chr4.2:23086373-23086392 MS.gene39528:intron 40.0%
!! ACTCTGGTTTGTTCGAAAAC+GGG + chr4.2:23086912-23086931 MS.gene39528:CDS 40.0%
!! CAAGGTCTACTTTTCTGCTT+TGG + chr4.2:23085287-23085306 MS.gene39528:CDS 40.0%
!! GCATTGTAACGGATGGAATT+CGG + chr4.2:23086805-23086824 MS.gene39528:CDS 40.0%
!!! CAAGAGTTTTTTTTCCGGGA+TGG + chr4.2:23086579-23086598 MS.gene39528:CDS 40.0%
AAGCATGTGCCTGACAATAC+AGG - chr4.2:23086316-23086335 None:intergenic 45.0%
ACACATGCTCCTTCATTCCA+TGG + chr4.2:23084831-23084850 MS.gene39528:CDS 45.0%
ATGCACTGCAGATCCAATCA+AGG + chr4.2:23085074-23085093 MS.gene39528:CDS 45.0%
ATGGTGGCAAAACACCAAAG+AGG - chr4.2:23087037-23087056 None:intergenic 45.0%
ATTCTGTGCCTTCTGCAGAA+GGG - chr4.2:23085252-23085271 None:intergenic 45.0%
ATTGAGAGGAAGAGTCCCTT+GGG - chr4.2:23084770-23084789 None:intergenic 45.0%
CAACTTCAGCTACAATGGCA+AGG + chr4.2:23086271-23086290 MS.gene39528:intron 45.0%
CAAGGAGCCATGGTAACAAA+TGG - chr4.2:23084921-23084940 None:intergenic 45.0%
CCCTCATATATGGGCCTTTA+AGG + chr4.2:23086951-23086970 MS.gene39528:CDS 45.0%
CTACAAGAAGCCAACAAGTG+AGG - chr4.2:23086623-23086642 None:intergenic 45.0%
CTCACACCATACAGAGTCAT+GGG - chr4.2:23085198-23085217 None:intergenic 45.0%
GAAGCAAAAACAAGGAGCCA+TGG - chr4.2:23084931-23084950 None:intergenic 45.0%
GCTCTGCAAAACACAGACTT+TGG - chr4.2:23086988-23087007 None:intergenic 45.0%
GGGAAGACATAACGTGAAAC+GGG - chr4.2:23085006-23085025 None:intergenic 45.0%
GTAGTCGAAGATTTCCTGAC+TGG + chr4.2:23086773-23086792 MS.gene39528:CDS 45.0%
TAGTAGACAGAACTGAGGGA+TGG - chr4.2:23087056-23087075 None:intergenic 45.0%
TATTCTGTGCCTTCTGCAGA+AGG - chr4.2:23085253-23085272 None:intergenic 45.0%
TATTGAGAGGAAGAGTCCCT+TGG - chr4.2:23084771-23084790 None:intergenic 45.0%
TCACACCATACAGAGTCATG+GGG - chr4.2:23085197-23085216 None:intergenic 45.0%
TCGAGCAATGTATTCCATCC+CGG - chr4.2:23086596-23086615 None:intergenic 45.0%
TGCCAGGAGTAGTGTTTACA+TGG + chr4.2:23085329-23085348 MS.gene39528:CDS 45.0%
TGCCATGTAAACACTACTCC+TGG - chr4.2:23085334-23085353 None:intergenic 45.0%
TGGAGTAGTGGCATCCTTAA+AGG - chr4.2:23086968-23086987 None:intergenic 45.0%
TTCTCCCTACATCCTAGTTC+TGG + chr4.2:23086021-23086040 MS.gene39528:CDS 45.0%
TTGGCCAAGGAACCAAATGA+AGG - chr4.2:23084968-23084987 None:intergenic 45.0%
! AATGGCTTCCCCTGTTTTCT+TGG - chr4.2:23084903-23084922 None:intergenic 45.0%
! CAACAACTTTTGGACATGGC+AGG - chr4.2:23084794-23084813 None:intergenic 45.0%
! CTCTCCTTCATTTGGTTCCT+TGG + chr4.2:23084961-23084980 MS.gene39528:CDS 45.0%
! TTCCCCTGTTTTCTTGGTCT+TGG - chr4.2:23084897-23084916 None:intergenic 45.0%
AGCCTAGAGCCATGGAATGA+AGG - chr4.2:23084843-23084862 None:intergenic 50.0%
AGTCCCCACCATTTCAAAGC+TGG + chr4.2:23085858-23085877 MS.gene39528:CDS 50.0%
ATGGCCGTACAAGGACATTG+AGG - chr4.2:23085887-23085906 None:intergenic 50.0%
CACACCATACAGAGTCATGG+GGG - chr4.2:23085196-23085215 None:intergenic 50.0%
CATCCTCTGGCAATCTCTCT+GGG - chr4.2:23085026-23085045 None:intergenic 50.0%
CCATGACTCTGTATGGTGTG+AGG + chr4.2:23085196-23085215 MS.gene39528:CDS 50.0%
CCTCACACCATACAGAGTCA+TGG - chr4.2:23085199-23085218 None:intergenic 50.0%
CTACAATGGCAAGGGATGGA+CGG + chr4.2:23086280-23086299 MS.gene39528:CDS 50.0%
CTCCTTCATTCCATGGCTCT+AGG + chr4.2:23084838-23084857 MS.gene39528:CDS 50.0%
GAACAAGAAGCCTAGAGCCA+TGG - chr4.2:23084851-23084870 None:intergenic 50.0%
GACTCTGTATGGTGTGAGGA+AGG + chr4.2:23085200-23085219 MS.gene39528:CDS 50.0%
GAGCCCTCAATGTCCTTGTA+CGG + chr4.2:23085880-23085899 MS.gene39528:intron 50.0%
GATAGAAGGATGGCCGTACA+AGG - chr4.2:23085896-23085915 None:intergenic 50.0%
GATGAGGCCTTCTCAAGAGA+TGG + chr4.2:23085512-23085531 MS.gene39528:CDS 50.0%
GCTCGAAGAACCTCACTTGT+TGG + chr4.2:23086610-23086629 MS.gene39528:CDS 50.0%
GTAGCTGTACCAAGGAACTG+TGG - chr4.2:23086851-23086870 None:intergenic 50.0%
GTATGGTGTGAGGAAGGCTT+GGG + chr4.2:23085206-23085225 MS.gene39528:CDS 50.0%
TACAATGGCAAGGGATGGAC+GGG + chr4.2:23086281-23086300 MS.gene39528:CDS 50.0%
TAGACAGAACTGAGGGATGG+TGG - chr4.2:23087053-23087072 None:intergenic 50.0%
TCAGCTACAATGGCAAGGGA+TGG + chr4.2:23086276-23086295 MS.gene39528:intron 50.0%
TCATCCTCTGGCAATCTCTC+TGG - chr4.2:23085027-23085046 None:intergenic 50.0%
TGGCCGTACAAGGACATTGA+GGG - chr4.2:23085886-23085905 None:intergenic 50.0%
TGTATGGTGTGAGGAAGGCT+TGG + chr4.2:23085205-23085224 MS.gene39528:CDS 50.0%
TGTTCCCCCATGACTCTGTA+TGG + chr4.2:23085189-23085208 MS.gene39528:CDS 50.0%
! CAAGGCACTAGATGGTACTC+TGG + chr4.2:23086896-23086915 MS.gene39528:CDS 50.0%
! CAGAGTACCATCTAGTGCCT+TGG - chr4.2:23086898-23086917 None:intergenic 50.0%
! CGGTTTTCTGCGAACCATCT+AGG + chr4.2:23086825-23086844 MS.gene39528:CDS 50.0%
! GGGGAAGCCATTTGTTACCA+TGG + chr4.2:23084911-23084930 MS.gene39528:CDS 50.0%
!! GCTCCAGCTTTGAAATGGTG+GGG - chr4.2:23085864-23085883 None:intergenic 50.0%
!! GGCTCCAGCTTTGAAATGGT+GGG - chr4.2:23085865-23085884 None:intergenic 50.0%
!! TGAGGGCTCCAGCTTTGAAA+TGG - chr4.2:23085869-23085888 None:intergenic 50.0%
!! TGGACATGGCAGGTATTGAG+AGG - chr4.2:23084784-23084803 None:intergenic 50.0%
AGGCTTGGGAGTTTGCAAGG+TGG + chr4.2:23085220-23085239 MS.gene39528:CDS 55.0%
CCAAGGAACTGTGGCCTAGA+TGG - chr4.2:23086842-23086861 None:intergenic 55.0%
CCATCTAGGCCACAGTTCCT+TGG + chr4.2:23086839-23086858 MS.gene39528:CDS 55.0%
CTTCCCAGAGAGATTGCCAG+AGG + chr4.2:23085020-23085039 MS.gene39528:CDS 55.0%
CTTGGGAGTTTGCAAGGTGG+TGG + chr4.2:23085223-23085242 MS.gene39528:CDS 55.0%
GGAAGGCTTGGGAGTTTGCA+AGG + chr4.2:23085217-23085236 MS.gene39528:CDS 55.0%
TCCTTGGCCAAGCTTATCGC+TGG + chr4.2:23084977-23084996 MS.gene39528:CDS 55.0%
! CAAGGGATGGACGGGCTTAA+TGG + chr4.2:23086289-23086308 MS.gene39528:CDS 55.0%
!! GGGCTCCAGCTTTGAAATGG+TGG - chr4.2:23085866-23085885 None:intergenic 55.0%
GCAGGGAGCTTGTCATCCTC+TGG - chr4.2:23085039-23085058 None:intergenic 60.0%
GCCAGCGATAAGCTTGGCCA+AGG - chr4.2:23084981-23085000 None:intergenic 60.0%
GGTGGCTTCCCTTCTGCAGA+AGG + chr4.2:23085241-23085260 MS.gene39528:CDS 60.0%
CGGGACGCCAGCGATAAGCT+TGG - chr4.2:23084987-23085006 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 23084757 23087174 23084757 ID=MS.gene39528
chr4.2 mRNA 23084757 23087174 23084757 ID=MS.gene39528.t1;Parent=MS.gene39528
chr4.2 exon 23084757 23085371 23084757 ID=MS.gene39528.t1.exon1;Parent=MS.gene39528.t1
chr4.2 CDS 23084757 23085371 23084757 ID=cds.MS.gene39528.t1;Parent=MS.gene39528.t1
chr4.2 exon 23085467 23085568 23085467 ID=MS.gene39528.t1.exon2;Parent=MS.gene39528.t1
chr4.2 CDS 23085467 23085568 23085467 ID=cds.MS.gene39528.t1;Parent=MS.gene39528.t1
chr4.2 exon 23085774 23085896 23085774 ID=MS.gene39528.t1.exon3;Parent=MS.gene39528.t1
chr4.2 CDS 23085774 23085896 23085774 ID=cds.MS.gene39528.t1;Parent=MS.gene39528.t1
chr4.2 exon 23085995 23086207 23085995 ID=MS.gene39528.t1.exon4;Parent=MS.gene39528.t1
chr4.2 CDS 23085995 23086207 23085995 ID=cds.MS.gene39528.t1;Parent=MS.gene39528.t1
chr4.2 exon 23086280 23086379 23086280 ID=MS.gene39528.t1.exon5;Parent=MS.gene39528.t1
chr4.2 CDS 23086280 23086379 23086280 ID=cds.MS.gene39528.t1;Parent=MS.gene39528.t1
chr4.2 exon 23086501 23086673 23086501 ID=MS.gene39528.t1.exon6;Parent=MS.gene39528.t1
chr4.2 CDS 23086501 23086673 23086501 ID=cds.MS.gene39528.t1;Parent=MS.gene39528.t1
chr4.2 exon 23086752 23087174 23086752 ID=MS.gene39528.t1.exon7;Parent=MS.gene39528.t1
chr4.2 CDS 23086752 23087174 23086752 ID=cds.MS.gene39528.t1;Parent=MS.gene39528.t1
Gene Sequence

>MS.gene39528

ATGGAGGTAACCCAAGGGACTCTTCCTCTCAATACCTGCCATGTCCAAAAGTTGTTGCTTATCATCAATAGGTTACACATGCTCCTTCATTCCATGGCTCTAGGCTTCTTGTTCTATTACAGGGTGTGCTTTCTTTTCCAAGACCAAGAAAACAGGGGAAGCCATTTGTTACCATGGCTCCTTGTTTTTGCTTCAGAAATCATTCTCTCCTTCATTTGGTTCCTTGGCCAAGCTTATCGCTGGCGTCCCGTTTCACGTTATGTCTTCCCAGAGAGATTGCCAGAGGATGACAAGCTCCCTGCTGTTGATGTGTTCATATGCACTGCAGATCCAATCAAGGAACCCACTTTAGAGGTGATGAATACTGTTTTATCATCCATGGCACTAGATTATCCTCAAGAGAAGATTCATGTGTATCTTTCAGATGATGGGTGTTCCCCCATGACTCTGTATGGTGTGAGGAAGGCTTGGGAGTTTGCAAGGTGGTGGCTTCCCTTCTGCAGAAGGCACAGAATAAAAAACAGGTGCCCCAAGGTCTACTTTTCTGCTTTGGAGAGTGATAATAATGATTTTGCCAGGAGTAGTGTTTACATGGCAGAGAAGCAAAAGATTAAGGTTGAATATGATATGATTGTTTTTATTGAATTCCTTTAGATTGCAGAACATACATATAGAAACTTTGCTTTCTGATGAAAGTCAACAATTTGCAGAGAAAGTATGAGGCTTTTAAAGAAGAGATAGAGACATTCAGAAAAGATGAGGCCTTCTCAAGAGATGGTATTACTTTTGGAGATCATTCATCAGTCATTGAGGTATAATAGCACTTCATTGTAAATATGTAAACATGTTTGAAGAATAACAACTGTACCTGACAGCAATAATTTGAGTTTCTAGTGTGCTCAACAAATTACAAATTTGCGACAACAAAAATTAGTCAATGCTCATCTGCAACTATATATGTGCTAAATATACGCCATCTGCACTTTATACTAGACACATTTTATCTGAATTTTGCAGGTGATGCAAGAAGATATCATTGATGATGTGGATAATGTCAAAATGCCACAACTTGTCTATGTTTCGAGAGAGAGAAAGTCTTCTAGTCCCCACCATTTCAAAGCTGGAGCCCTCAATGTCCTTGTACGGCCATCCTTCTATCTTCCAAAGTATATATACAAAACTTGCTTTACAAACACAGCAAATGTAATGATTTCATGTCTTGCATAATAATTTTTCAGCTTCGTGTATCTGCTGTGATGAGTAATTCTCCCTACATCCTAGTTCTGGATTGTGACATGTTCTGCAACTATCCAAATTCAGCTCGATATGCCATGTGTTTTCACCTTGATCCAAAGATATCATCCTCCTTGTCTTTTGTTCAATTTCCTCAGAAATTTCACAACATTAGCAAGAAAGACATCTATGACAGTCAGCTGAGATCATTATTTACTGTAAGCACATAAAAACTGATCCTTGAGATTAAATCTTTGCAGTATTAAACTAAATCTTTTGAACAACTTCAGCTACAATGGCAAGGGATGGACGGGCTTAATGGACCTGTATTGTCAGGCACATGCTTTTATATGAAAAGGGTATCATTGTACGGAAATCAAGCGAATGAAGGTATTGACCCACAAGGTTGCTTGTAAAACACTAGATTGATATATTTTAACAACATTGACATATGAATATAGCCTTTATGTTATGAACTAACATACTTTACTGTTCTGAGTTTTAAATTTAGGAGGGACTGACCTGCTGCAACTTCGAGAATATTTTGGTTCATCGAATGAATTCATCAAATCACTTACTCAAAACTACACAAGAGTTTTTTTTCCGGGATGGAATACATTGCTCGAAGAACCTCACTTGTTGGCTTCTTGTAGATATGAAACTGGCACTAAATGGGGACAAGATGTAAGTAAACTTCAAAACTCAGATATTACATCAAAATTTATACAGAAAAACTCAATGTATAATTTTGAACTGTTTCAGGTAGGTTTCTTATACGATAGTGTAGTCGAAGATTTCCTGACTGGATTTATCTTGCATTGTAACGGATGGAATTCGGTTTTCTGCGAACCATCTAGGCCACAGTTCCTTGGTACAGCTACGACAAATTTGAATGATGTACTAATCCAAGGCACTAGATGGTACTCTGGTTTGTTCGAAAACGGGATAAGCAAGTTTTGCCCCCTCATATATGGGCCTTTAAGGATGCCACTACTCCAAAGTCTGTGTTTTGCAGAGCTCACATATTTCCCTCTTTATTGTTTGCCTCTTTGGTGTTTTGCCACCATCCCTCAGTTCTGTCTACTAAATGGAATACCCTTGTATCCTAAGGTAACACAGATATTAAACTTCCTACCGTTTTCACTTCAATCTCAGATTCTTTTGTATATTCACGTCAAACGCTAA
Protein sequence

>MS.gene39528.t1

MEVTQGTLPLNTCHVQKLLLIINRLHMLLHSMALGFLFYYRVCFLFQDQENRGSHLLPWLLVFASEIILSFIWFLGQAYRWRPVSRYVFPERLPEDDKLPAVDVFICTADPIKEPTLEVMNTVLSSMALDYPQEKIHVYLSDDGCSPMTLYGVRKAWEFARWWLPFCRRHRIKNRCPKVYFSALESDNNDFARSSVYMAEKQKIKRKYEAFKEEIETFRKDEAFSRDGITFGDHSSVIEVMQEDIIDDVDNVKMPQLVYVSRERKSSSPHHFKAGALNVLLRVSAVMSNSPYILVLDCDMFCNYPNSARYAMCFHLDPKISSSLSFVQFPQKFHNISKKDIYDSQLRSLFTLQWQGMDGLNGPVLSGTCFYMKRVSLYGNQANEGGTDLLQLREYFGSSNEFIKSLTQNYTRVFFPGWNTLLEEPHLLASCRYETGTKWGQDVGFLYDSVVEDFLTGFILHCNGWNSVFCEPSRPQFLGTATTNLNDVLIQGTRWYSGLFENGISKFCPLIYGPLRMPLLQSLCFAELTYFPLYCLPLWCFATIPQFCLLNGIPLYPKVTQILNFLPFSLQSQILLYIHVKR