Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39592.t1 | XP_003608057.2 | 96 | 1039 | 42 | 0 | 1 | 1039 | 1 | 1039 | 0.00E+00 | 1866.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39592.t1 | Q9ERE3 | 34.7 | 95 | 60 | 2 | 579 | 672 | 31 | 124 | 1.0e-07 | 60.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39592.t1 | G7JNK6 | 96.0 | 1039 | 42 | 0 | 1 | 1039 | 1 | 1039 | 0.0e+00 | 1866.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051209 | MS.gene39592 | 0.810643 | 1.04E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene39592 | 0.816526 | 5.28E-52 | -1.69E-46 |
| MS.gene057174 | MS.gene39592 | 0.803526 | 3.34E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene39592 | 0.850652 | 1.48E-60 | -1.69E-46 |
| MS.gene060935 | MS.gene39592 | 0.810976 | 8.82E-51 | -1.69E-46 |
| MS.gene060937 | MS.gene39592 | 0.822003 | 2.99E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39592.t1 | MTR_4g087210 | 96.824 | 1039 | 33 | 0 | 1 | 1039 | 1 | 1039 | 0.0 | 2078 |
| MS.gene39592.t1 | MTR_1g034190 | 62.128 | 1043 | 323 | 11 | 6 | 1037 | 13 | 994 | 0.0 | 1253 |
| MS.gene39592.t1 | MTR_0147s0080 | 40.871 | 482 | 221 | 11 | 561 | 1031 | 679 | 1107 | 1.33e-91 | 317 |
| MS.gene39592.t1 | MTR_0147s0080 | 33.105 | 438 | 248 | 7 | 1 | 405 | 3 | 428 | 3.74e-65 | 240 |
| MS.gene39592.t1 | MTR_4g101240 | 84.024 | 169 | 26 | 1 | 502 | 669 | 18 | 186 | 2.73e-90 | 287 |
| MS.gene39592.t1 | MTR_4g012875 | 33.105 | 438 | 248 | 7 | 1 | 405 | 3 | 428 | 7.10e-67 | 240 |
| MS.gene39592.t1 | MTR_4g012875 | 57.471 | 87 | 37 | 0 | 561 | 647 | 679 | 765 | 1.42e-24 | 111 |
| MS.gene39592.t1 | MTR_0147s0080 | 33.105 | 438 | 248 | 7 | 1 | 405 | 3 | 428 | 1.70e-65 | 240 |
| MS.gene39592.t1 | MTR_0147s0080 | 41.061 | 358 | 152 | 9 | 561 | 908 | 679 | 987 | 4.08e-61 | 227 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39592.t1 | AT2G15900 | 52.526 | 1049 | 416 | 16 | 4 | 1032 | 2 | 988 | 0.0 | 1029 |
| MS.gene39592.t1 | AT1G15240 | 32.117 | 1096 | 584 | 26 | 3 | 1030 | 4 | 1007 | 3.35e-165 | 513 |
| MS.gene39592.t1 | AT1G15240 | 30.924 | 1093 | 587 | 27 | 3 | 1019 | 4 | 1004 | 7.91e-152 | 478 |
| MS.gene39592.t1 | AT1G15240 | 31.513 | 714 | 401 | 17 | 3 | 647 | 4 | 698 | 1.59e-93 | 313 |
| MS.gene39592.t1 | AT1G15240 | 31.513 | 714 | 401 | 17 | 3 | 647 | 4 | 698 | 1.59e-93 | 313 |
| MS.gene39592.t1 | AT1G15240 | 31.513 | 714 | 401 | 17 | 3 | 647 | 4 | 698 | 1.59e-93 | 313 |
Find 227 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTGCCACCATTTGTTATT+TGG | 0.123366 | 4.2:+24088048 | None:intergenic |
| CTCTCCCTGGTCACTCATTT+TGG | 0.156603 | 4.2:+24094613 | None:intergenic |
| TGAGAGGCGCGAAGGATTTC+GGG | 0.165173 | 4.2:-24094030 | MS.gene39592:CDS |
| CATTCTTACTCGCGATAATT+TGG | 0.179445 | 4.2:-24091089 | MS.gene39592:CDS |
| TTGAGAGGCGCGAAGGATTT+CGG | 0.227157 | 4.2:-24094031 | MS.gene39592:CDS |
| GGCAAATGCAATGTGTAATT+TGG | 0.236142 | 4.2:+24093168 | None:intergenic |
| CATTGCATTTGCCTCCTAAA+AGG | 0.265777 | 4.2:-24093158 | MS.gene39592:CDS |
| ATTCCATTTGTTGAACTCTA+AGG | 0.270304 | 4.2:-24097639 | MS.gene39592:CDS |
| ACTGCCACCATTTGTTATTT+GGG | 0.274884 | 4.2:+24088049 | None:intergenic |
| CCTTCGCGCCTCTCAAATTC+CGG | 0.277396 | 4.2:+24094038 | None:intergenic |
| TTTCTGAAGAACTACTCTTT+TGG | 0.284193 | 4.2:-24092590 | MS.gene39592:intron |
| ATGGAGCTACCTTCTTGATT+AGG | 0.286690 | 4.2:+24094080 | None:intergenic |
| GCAACTTGCCTATGCAATTC+TGG | 0.300577 | 4.2:-24086816 | MS.gene39592:CDS |
| GATGCAGCCTGTTATGAATT+TGG | 0.304321 | 4.2:-24097367 | MS.gene39592:CDS |
| AAGCCTTCTCAAACAATAAC+TGG | 0.323170 | 4.2:-24088020 | MS.gene39592:CDS |
| GTTTACTCACTAACGTTTCC+TGG | 0.326174 | 4.2:+24094345 | None:intergenic |
| ATCTCAGTTCCTTGGTATAA+AGG | 0.329897 | 4.2:+24094644 | None:intergenic |
| TCAAACGATAATTTCTTGTC+TGG | 0.332288 | 4.2:+24094209 | None:intergenic |
| GACATCAAGAAACTGCTCTT+TGG | 0.346783 | 4.2:-24087921 | MS.gene39592:intron |
| AGTTCAAGCTCCGCACTCTT+TGG | 0.351842 | 4.2:-24098434 | MS.gene39592:CDS |
| TCTCAAACAATAACTGGATC+TGG | 0.357752 | 4.2:-24088014 | MS.gene39592:CDS |
| TGGAGCTACCTTCTTGATTA+GGG | 0.358391 | 4.2:+24094081 | None:intergenic |
| CATACCCGGCACCGGAGCTT+TGG | 0.360237 | 4.2:+24093960 | None:intergenic |
| TTGCTGAACAACATGAAGTA+TGG | 0.367730 | 4.2:-24092754 | MS.gene39592:CDS |
| GTTCTTCTGACATGATAGTT+AGG | 0.369716 | 4.2:-24094001 | MS.gene39592:CDS |
| ACAGCCCAAGCCTGCTGATT+GGG | 0.370529 | 4.2:-24094552 | MS.gene39592:CDS |
| TGATCAGGAAACTCCCTATC+TGG | 0.371544 | 4.2:+24097946 | None:intergenic |
| AATGCAGGAGACAGGTGTTT+TGG | 0.376563 | 4.2:-24088921 | MS.gene39592:intron |
| TGTGCCCAATCAGCAGGCTT+GGG | 0.385165 | 4.2:+24094548 | None:intergenic |
| CCACATGTTCTCAAGATTCT+CGG | 0.390463 | 4.2:+24094481 | None:intergenic |
| TGAGGCAGATTCACTGGCTT+CGG | 0.395414 | 4.2:-24088843 | MS.gene39592:CDS |
| AGAAGAAATCAAGCGGCAAT+AGG | 0.399169 | 4.2:-24097713 | MS.gene39592:CDS |
| GAGTGCGGAGCTTGAACTCT+TGG | 0.399382 | 4.2:+24098439 | None:intergenic |
| AGGGATTTAGTTGATTTAGT+AGG | 0.400244 | 4.2:-24097755 | MS.gene39592:CDS |
| GGCTCTTGAGGCAGATTCAC+TGG | 0.400717 | 4.2:-24088849 | MS.gene39592:CDS |
| CACAGCCCAAGCCTGCTGAT+TGG | 0.405397 | 4.2:-24094553 | MS.gene39592:CDS |
| GGGCTTGCCAAATTCATAAC+AGG | 0.408154 | 4.2:+24097360 | None:intergenic |
| CAAATTATCGCGAGTAAGAA+TGG | 0.411932 | 4.2:+24091090 | None:intergenic |
| GCCTTGGAATGCAGATGAAT+TGG | 0.413059 | 4.2:-24091362 | MS.gene39592:CDS |
| AACATCACAAAACACGAATC+TGG | 0.416215 | 4.2:-24087984 | MS.gene39592:CDS |
| GACAAGAAATTATCGTTTGA+GGG | 0.418417 | 4.2:-24094206 | MS.gene39592:CDS |
| GAGAACAAAATTGTCAAAAG+TGG | 0.419503 | 4.2:-24094431 | MS.gene39592:CDS |
| ACATACATATCTGTCACATT+TGG | 0.425305 | 4.2:-24098133 | MS.gene39592:CDS |
| CCGTGATTCGCTCAATATCT+CGG | 0.429698 | 4.2:-24097410 | MS.gene39592:CDS |
| GGTATAAAATTTCATTAAAG+AGG | 0.436199 | 4.2:-24094133 | MS.gene39592:CDS |
| GCCATTGCATCCTCCACAAC+AGG | 0.436964 | 4.2:+24098030 | None:intergenic |
| ACCTCAGGTGGCACTCCAAC+AGG | 0.437065 | 4.2:+24091061 | None:intergenic |
| TAAATAATGTCGAATTTCGT+TGG | 0.437575 | 4.2:-24098176 | MS.gene39592:CDS |
| CTGATACTGAGGACAGTGAT+AGG | 0.438597 | 4.2:-24091294 | MS.gene39592:CDS |
| AACATTTGTGCCCAATCAGC+AGG | 0.439180 | 4.2:+24094542 | None:intergenic |
| CTACATCATTGTACTTGCCT+TGG | 0.443628 | 4.2:-24091378 | MS.gene39592:CDS |
| ACAACTTTAGTCAGCTTGAT+CGG | 0.445570 | 4.2:-24087022 | MS.gene39592:CDS |
| ATCAAGCTGACTAAAGTTGT+TGG | 0.447061 | 4.2:+24087025 | None:intergenic |
| TCAAGCTCCGCACTCTTTGG+TGG | 0.447896 | 4.2:-24098431 | MS.gene39592:CDS |
| CTTCTCTATCAAAATTATCA+TGG | 0.448603 | 4.2:+24091257 | None:intergenic |
| CTTGAGAACATGTGGGCAAA+AGG | 0.449336 | 4.2:-24094473 | MS.gene39592:CDS |
| ATTATAGCGTGTATCTGATC+AGG | 0.453520 | 4.2:+24097931 | None:intergenic |
| CTTCGCGCCTCTCAAATTCC+GGG | 0.455719 | 4.2:+24094039 | None:intergenic |
| GTAAGAATGGAATTTGTAGT+TGG | 0.456922 | 4.2:+24091103 | None:intergenic |
| GGCAATTAGCTCCAAAGCTC+CGG | 0.457099 | 4.2:-24093971 | MS.gene39592:CDS |
| CAAACGATAATTTCTTGTCT+GGG | 0.458726 | 4.2:+24094210 | None:intergenic |
| TCTATCAATAGCCAAGTTGC+TGG | 0.459990 | 4.2:+24091168 | None:intergenic |
| TTGTGCCCAATCAGCAGGCT+TGG | 0.461797 | 4.2:+24094547 | None:intergenic |
| CAACTTTAGTCAGCTTGATC+GGG | 0.462226 | 4.2:-24087021 | MS.gene39592:CDS |
| CCAATGTCATCTCAGTTCCT+TGG | 0.462306 | 4.2:+24094636 | None:intergenic |
| AATTGTCAAAAGTGGATCTC+AGG | 0.463231 | 4.2:-24094423 | MS.gene39592:CDS |
| AGCTCCAAAGCTCCGGTGCC+GGG | 0.463328 | 4.2:-24093964 | MS.gene39592:intron |
| GTAGCCAAGGCATGCGTTGA+AGG | 0.466913 | 4.2:+24094284 | None:intergenic |
| AACACAACATTCCTCATCTC+AGG | 0.469294 | 4.2:+24086770 | None:intergenic |
| CTCAAACAATAACTGGATCT+GGG | 0.470948 | 4.2:-24088013 | MS.gene39592:CDS |
| ATATTTCAGCTTAAGAAAAG+AGG | 0.472622 | 4.2:-24089668 | MS.gene39592:CDS |
| AAAAGAGGGACACTAACATT+AGG | 0.474329 | 4.2:+24089707 | None:intergenic |
| CAAGCTGATACACACCTTTG+AGG | 0.474403 | 4.2:+24092715 | None:intergenic |
| TCCTGTTGTGGAGGATGCAA+TGG | 0.476491 | 4.2:-24098031 | MS.gene39592:CDS |
| GGCAAGTACAATGATGTAGA+AGG | 0.478982 | 4.2:+24091382 | None:intergenic |
| AGACAAGAAATTATCGTTTG+AGG | 0.481689 | 4.2:-24094207 | MS.gene39592:CDS |
| AGTGATAGGATCAGTAATCT+AGG | 0.481967 | 4.2:-24091280 | MS.gene39592:CDS |
| ATTCCTCATCTCAGGAAAGA+TGG | 0.481971 | 4.2:+24086778 | None:intergenic |
| GTCTAGCAGTGCTTCTGCCT+TGG | 0.482912 | 4.2:-24094111 | MS.gene39592:CDS |
| TTTGAAAGGTTACCCATCAC+TGG | 0.482993 | 4.2:-24091212 | MS.gene39592:CDS |
| ACTCAGAAATTACTCCAGAT+AGG | 0.483988 | 4.2:-24097960 | MS.gene39592:CDS |
| GTTATGAATTTGGCAAGCCC+AGG | 0.484130 | 4.2:-24097357 | MS.gene39592:CDS |
| ACACTATTGCACAAGGGATT+CGG | 0.485507 | 4.2:-24088813 | MS.gene39592:CDS |
| CAGATCATTCACACTCTCCA+TGG | 0.486840 | 4.2:+24098464 | None:intergenic |
| TGATATTGTACGCCAGTTCA+AGG | 0.487332 | 4.2:-24091464 | MS.gene39592:CDS |
| TAGCTCCAAAGCTCCGGTGC+CGG | 0.490557 | 4.2:-24093965 | MS.gene39592:CDS |
| GAAAATTGATTCTCCTGTTG+TGG | 0.492238 | 4.2:-24098043 | MS.gene39592:CDS |
| GCAAGTTGCTTCATACATAC+AGG | 0.497120 | 4.2:+24086830 | None:intergenic |
| TTAAGAAAAGAGGTTGGATA+AGG | 0.497523 | 4.2:-24089658 | MS.gene39592:intron |
| CACATGTTCTCAAGATTCTC+GGG | 0.498204 | 4.2:+24094482 | None:intergenic |
| ACTGAAGTAATATATATCTC+TGG | 0.498988 | 4.2:+24086976 | None:intergenic |
| CAGCAACATTAGCTATTGAC+AGG | 0.499362 | 4.2:+24092771 | None:intergenic |
| GACAGATATGTATGTGATCT+AGG | 0.500161 | 4.2:+24098141 | None:intergenic |
| TGCTGATTGGGCACAAATGT+TGG | 0.500813 | 4.2:-24094540 | MS.gene39592:CDS |
| ACTAAAACGTTGCAGGTTGT+GGG | 0.500935 | 4.2:-24093779 | MS.gene39592:intron |
| TCTTACTCGCGATAATTTGG+AGG | 0.501090 | 4.2:-24091086 | MS.gene39592:CDS |
| TCCAATTCATCTGCATTCCA+AGG | 0.501892 | 4.2:+24091361 | None:intergenic |
| CGAGATATTGAGCGAATCAC+GGG | 0.501991 | 4.2:+24097411 | None:intergenic |
| CAAAAGGAAGAAATTACAAA+AGG | 0.502379 | 4.2:-24094457 | MS.gene39592:CDS |
| GATTCACTGGCTTCGGAAAG+AGG | 0.502982 | 4.2:-24088836 | MS.gene39592:CDS |
| TAATGTCGAATTTCGTTGGA+AGG | 0.504035 | 4.2:-24098172 | MS.gene39592:CDS |
| AGGATTTCGTGGTTGATTTG+TGG | 0.504295 | 4.2:-24097984 | MS.gene39592:CDS |
| CTCTCGGGAGACCTTAGTGC+TGG | 0.505208 | 4.2:+24097608 | None:intergenic |
| GTATAGTCTGTTACCAGTGA+TGG | 0.505667 | 4.2:+24091199 | None:intergenic |
| GATATTGTACGCCAGTTCAA+GGG | 0.507285 | 4.2:-24091463 | MS.gene39592:CDS |
| GATCCAGTTATTGTTTGAGA+AGG | 0.507690 | 4.2:+24088017 | None:intergenic |
| AGATATATATTACTTCAGTC+AGG | 0.511847 | 4.2:-24086972 | MS.gene39592:intron |
| TCAGTGATGAAGACCTTGGC+AGG | 0.513783 | 4.2:-24092557 | MS.gene39592:intron |
| TTCAGCTTAAGAAAAGAGGT+TGG | 0.515152 | 4.2:-24089664 | MS.gene39592:CDS |
| CCGAGATATTGAGCGAATCA+CGG | 0.519630 | 4.2:+24097410 | None:intergenic |
| GCTCCTTAGAGTTCAACAAA+TGG | 0.519682 | 4.2:+24097636 | None:intergenic |
| TTTCTGTTAATGCAGGAGAC+AGG | 0.520489 | 4.2:-24088929 | MS.gene39592:intron |
| TCAGATACACGCTATAATCA+TGG | 0.521586 | 4.2:-24097926 | MS.gene39592:CDS |
| CTGATGGACAGAATAGAACT+TGG | 0.521866 | 4.2:-24093700 | MS.gene39592:CDS |
| TACTGACGAGTCCAGCAACT+TGG | 0.522257 | 4.2:-24091179 | MS.gene39592:CDS |
| CAAGCTCCGCACTCTTTGGT+GGG | 0.523101 | 4.2:-24098430 | MS.gene39592:CDS |
| TGATTTAGTAGGTGATCACT+TGG | 0.523119 | 4.2:-24097744 | MS.gene39592:CDS |
| GACATGATAGTTAGGAAAGA+GGG | 0.524862 | 4.2:-24093993 | MS.gene39592:CDS |
| TACTCAATTGCAGTGACTGA+TGG | 0.527047 | 4.2:-24093716 | MS.gene39592:CDS |
| GTGATCTGTCGGAGGAAGCT+AGG | 0.527680 | 4.2:-24091141 | MS.gene39592:CDS |
| TCTACCTTCAACGCATGCCT+TGG | 0.527916 | 4.2:-24094288 | MS.gene39592:CDS |
| CGTGATTCGCTCAATATCTC+GGG | 0.528206 | 4.2:-24097409 | MS.gene39592:CDS |
| ACAGTCAGAAGCAGAACTCT+TGG | 0.531509 | 4.2:+24094391 | None:intergenic |
| GATGGTTTAAGGCGAAAAGT+TGG | 0.532809 | 4.2:-24091433 | MS.gene39592:CDS |
| TTTGTAAGGATGTCTCTCCC+TGG | 0.533191 | 4.2:+24094600 | None:intergenic |
| GTACTTGCAACGCTTTGTAG+TGG | 0.533335 | 4.2:+24094257 | None:intergenic |
| GTCAAAACAGATATTACAGC+TGG | 0.533552 | 4.2:-24088896 | MS.gene39592:CDS |
| CTGCCACCATTTGTTATTTG+GGG | 0.534946 | 4.2:+24088050 | None:intergenic |
| TCACACCTTGTACTCACTCT+CGG | 0.535005 | 4.2:+24097592 | None:intergenic |
| CTCAGAAATTACTCCAGATA+GGG | 0.535941 | 4.2:-24097959 | MS.gene39592:CDS |
| ATGAAGAACTCTACGGCGCT+TGG | 0.537329 | 4.2:+24086720 | None:intergenic |
| ACAGATATTACAGCTGGTGA+TGG | 0.538825 | 4.2:-24088890 | MS.gene39592:CDS |
| CACACCTTGTACTCACTCTC+GGG | 0.542690 | 4.2:+24097593 | None:intergenic |
| AGAGGGACACTAACATTAGG+AGG | 0.542691 | 4.2:+24089710 | None:intergenic |
| AAAGGCATCATCAGTGTTCG+AGG | 0.544346 | 4.2:+24093128 | None:intergenic |
| TTGTCAACCAAATTCAAAAG+AGG | 0.545274 | 4.2:+24089692 | None:intergenic |
| GGATTACCCCAAATAACAAA+TGG | 0.545345 | 4.2:-24088056 | MS.gene39592:CDS |
| GGTTTAAGGCGAAAAGTTGG+TGG | 0.548757 | 4.2:-24091430 | MS.gene39592:CDS |
| AACATTATCTACAGAAGAGA+GGG | 0.551246 | 4.2:-24097675 | MS.gene39592:CDS |
| AGCTACCTTCTTGATTAGGG+TGG | 0.551883 | 4.2:+24094084 | None:intergenic |
| ACAAAGGACCATGCTTCTGA+AGG | 0.554554 | 4.2:-24094155 | MS.gene39592:CDS |
| AGGAGCTTCATCCAGCACTA+AGG | 0.554669 | 4.2:-24097619 | MS.gene39592:CDS |
| TTCTTCAGTGATGAAGACCT+TGG | 0.556745 | 4.2:-24092561 | MS.gene39592:CDS |
| TCTCCATCTTTCCTGAGATG+AGG | 0.557282 | 4.2:-24086781 | MS.gene39592:CDS |
| TCTATCTAGTGTGCTTCCCC+CGG | 0.559212 | 4.2:-24098079 | MS.gene39592:CDS |
| GTCTCCCGAGAGTGAGTACA+AGG | 0.560164 | 4.2:-24097597 | MS.gene39592:intron |
| TGGAAGACGCTATTGATGAT+TGG | 0.560447 | 4.2:-24088870 | MS.gene39592:CDS |
| GATAATTTGGAGGATCCTGT+TGG | 0.562138 | 4.2:-24091076 | MS.gene39592:CDS |
| AGATCATTCACACTCTCCAT+GGG | 0.565955 | 4.2:+24098465 | None:intergenic |
| TGACATGATAGTTAGGAAAG+AGG | 0.566809 | 4.2:-24093994 | MS.gene39592:CDS |
| CTATTGATGATTGGCTCTTG+AGG | 0.567715 | 4.2:-24088861 | MS.gene39592:CDS |
| CAAAATTGCATACCCGGCAC+CGG | 0.570244 | 4.2:+24093952 | None:intergenic |
| TCAGCTTGATAAATATCTCC+AGG | 0.570844 | 4.2:-24093088 | MS.gene39592:intron |
| TTGATTAGGGTGGATTGCCA+AGG | 0.571026 | 4.2:+24094094 | None:intergenic |
| TTCAACGCATGCCTTGGCTA+CGG | 0.571209 | 4.2:-24094282 | MS.gene39592:CDS |
| TATAGTCTGTTACCAGTGAT+GGG | 0.573413 | 4.2:+24091200 | None:intergenic |
| GGCCCCTCATTGATGAGGGA+TGG | 0.575821 | 4.2:+24091403 | None:intergenic |
| CCGGAATTTGAGAGGCGCGA+AGG | 0.578136 | 4.2:-24094038 | MS.gene39592:CDS |
| GCTCAGAGTTGATAAAGTGA+AGG | 0.578324 | 4.2:-24094180 | MS.gene39592:CDS |
| CCGAGAATCTTGAGAACATG+TGG | 0.578801 | 4.2:-24094481 | MS.gene39592:CDS |
| CAAAGGACCATGCTTCTGAA+GGG | 0.578907 | 4.2:-24094154 | MS.gene39592:CDS |
| TCACCATCCCTCATCAATGA+GGG | 0.582691 | 4.2:-24091406 | MS.gene39592:CDS |
| TGATAGACAGCGTGATCTGT+CGG | 0.584287 | 4.2:-24091152 | MS.gene39592:CDS |
| TGTGTTAAGTTCTGATACTG+AGG | 0.584709 | 4.2:-24091305 | MS.gene39592:CDS |
| TAGAAGTTCCAGAATTGCAT+AGG | 0.584754 | 4.2:+24086808 | None:intergenic |
| TGATTGGGCACAAATGTTGG+AGG | 0.587274 | 4.2:-24094537 | MS.gene39592:CDS |
| GCAATCCACCCTAATCAAGA+AGG | 0.589850 | 4.2:-24094089 | MS.gene39592:CDS |
| CTCAGAGTTGATAAAGTGAA+GGG | 0.590030 | 4.2:-24094179 | MS.gene39592:CDS |
| ATTGGCCAAAATGAGTGACC+AGG | 0.595103 | 4.2:-24094618 | MS.gene39592:CDS |
| TGTCAACCAAATTCAAAAGA+GGG | 0.595928 | 4.2:+24089693 | None:intergenic |
| AATGTAGCAAGTCATCATCA+TGG | 0.596509 | 4.2:-24094725 | MS.gene39592:CDS |
| ACTGGTGAGGAAATAAGAAA+CGG | 0.596825 | 4.2:+24098392 | None:intergenic |
| GTCAGAAGCAGAACTCTTGG+TGG | 0.599173 | 4.2:+24094394 | None:intergenic |
| TTATGAATTTGGCAAGCCCA+GGG | 0.600445 | 4.2:-24097356 | MS.gene39592:intron |
| GAGAGGCGCGAAGGATTTCG+GGG | 0.601061 | 4.2:-24094029 | MS.gene39592:CDS |
| AACGATGAAGAAGAAACCCA+TGG | 0.606840 | 4.2:-24098481 | None:intergenic |
| AACTCTGTTGCTAATAGCGG+CGG | 0.607664 | 4.2:-24094701 | MS.gene39592:CDS |
| TGATAAAGTGAAGGGTACAA+AGG | 0.608098 | 4.2:-24094171 | MS.gene39592:CDS |
| ATCACCATCCCTCATCAATG+AGG | 0.608597 | 4.2:-24091407 | MS.gene39592:CDS |
| TAGAAGGCCCCTCATTGATG+AGG | 0.608644 | 4.2:+24091398 | None:intergenic |
| AAAAGTGAAACTTACTGGTG+AGG | 0.612892 | 4.2:+24098379 | None:intergenic |
| TTTCAGGTCCTCTGGCCTGG+TGG | 0.613712 | 4.2:-24088098 | MS.gene39592:intron |
| CAAACAATAACTGGATCTGG+GGG | 0.614994 | 4.2:-24088011 | MS.gene39592:CDS |
| TCAAACAATAACTGGATCTG+GGG | 0.615435 | 4.2:-24088012 | MS.gene39592:CDS |
| TCAGTTCCTTGGTATAAAGG+TGG | 0.619427 | 4.2:+24094647 | None:intergenic |
| TAATAAGAGGATACCTGCCA+AGG | 0.620262 | 4.2:+24092544 | None:intergenic |
| GAAACGTTAGTGAGTAAACA+TGG | 0.620799 | 4.2:-24094341 | MS.gene39592:CDS |
| GGTAACTCTGTTGCTAATAG+CGG | 0.621046 | 4.2:-24094704 | MS.gene39592:CDS |
| CTATTGCACAAGGGATTCGG+TGG | 0.621228 | 4.2:-24088810 | MS.gene39592:CDS |
| TGTTGTAGCACTTTGCTGTG+TGG | 0.621233 | 4.2:+24091330 | None:intergenic |
| TCTTGCTGAAATATCAGCGA+GGG | 0.621365 | 4.2:-24097899 | MS.gene39592:CDS |
| TGCTGAACAACATGAAGTAT+GGG | 0.622281 | 4.2:-24092753 | MS.gene39592:CDS |
| ATATTGTACGCCAGTTCAAG+GGG | 0.623871 | 4.2:-24091462 | MS.gene39592:CDS |
| AAACATTATCTACAGAAGAG+AGG | 0.626948 | 4.2:-24097676 | MS.gene39592:CDS |
| AATTGATTCTCCTGTTGTGG+AGG | 0.630990 | 4.2:-24098040 | MS.gene39592:CDS |
| TCAGAAGCAGAACTCTTGGT+GGG | 0.631804 | 4.2:+24094395 | None:intergenic |
| TTGTAGTGGATCCGTAGCCA+AGG | 0.632370 | 4.2:+24094271 | None:intergenic |
| TCCTGTTGGAGTGCCACCTG+AGG | 0.632724 | 4.2:-24091062 | MS.gene39592:intron |
| GAGGGACACTAACATTAGGA+GGG | 0.632912 | 4.2:+24089711 | None:intergenic |
| GGCATGCGTTGAAGGTAGAG+AGG | 0.639200 | 4.2:+24094292 | None:intergenic |
| TGAGTAGACAGCAAAAGATG+TGG | 0.639580 | 4.2:+24093733 | None:intergenic |
| CCAAGGAACTGAGATGACAT+TGG | 0.639721 | 4.2:-24094636 | MS.gene39592:CDS |
| CAGATACAAGTAAATCGATG+TGG | 0.645726 | 4.2:-24098248 | MS.gene39592:CDS |
| AGAGAGCCCACCAAAGAGTG+CGG | 0.646390 | 4.2:+24098424 | None:intergenic |
| AAAGAGGACACTATTGCACA+AGG | 0.651055 | 4.2:-24088820 | MS.gene39592:CDS |
| ATCTTGTCGACTTGTTGACA+AGG | 0.652613 | 4.2:-24097864 | MS.gene39592:intron |
| AGAAGGCCCCTCATTGATGA+GGG | 0.652966 | 4.2:+24091399 | None:intergenic |
| AAAACTTACCACCAGGCCAG+AGG | 0.653092 | 4.2:+24088090 | None:intergenic |
| TTACCCCAAATAACAAATGG+TGG | 0.655508 | 4.2:-24088053 | MS.gene39592:CDS |
| CACCATCCCTCATCAATGAG+GGG | 0.658813 | 4.2:-24091405 | MS.gene39592:CDS |
| TGTTGGAGGTTGCAACTCAG+AGG | 0.658967 | 4.2:-24094523 | MS.gene39592:CDS |
| AACGCAACGTTGATGTACAA+AGG | 0.659249 | 4.2:+24093110 | None:intergenic |
| TAAAGGTGGATGCTTACTAG+AGG | 0.667472 | 4.2:+24094661 | None:intergenic |
| CAGCCTACACATACCTCAGG+TGG | 0.668348 | 4.2:+24091049 | None:intergenic |
| ACATGATAGTTAGGAAAGAG+GGG | 0.669528 | 4.2:-24093992 | MS.gene39592:CDS |
| CGAGAATCTTGAGAACATGT+GGG | 0.676043 | 4.2:-24094480 | MS.gene39592:CDS |
| AGTAAATGTAGATGATGCTG+TGG | 0.677534 | 4.2:-24091488 | MS.gene39592:CDS |
| TTGGCCAAAATGAGTGACCA+GGG | 0.681969 | 4.2:-24094617 | MS.gene39592:CDS |
| AAGCATCCACCTTTATACCA+AGG | 0.684251 | 4.2:-24094653 | MS.gene39592:CDS |
| CAAACAAATAGAATTGACAT+CGG | 0.705401 | 4.2:+24098216 | None:intergenic |
| AGGGACACTAACATTAGGAG+GGG | 0.709938 | 4.2:+24089712 | None:intergenic |
| TAGACAGCGTGATCTGTCGG+AGG | 0.710399 | 4.2:-24091149 | MS.gene39592:CDS |
| AAGAGGACACTATTGCACAA+GGG | 0.711968 | 4.2:-24088819 | MS.gene39592:CDS |
| TTCTTGCTGAAATATCAGCG+AGG | 0.728738 | 4.2:-24097900 | MS.gene39592:CDS |
| TATTGTACGCCAGTTCAAGG+GGG | 0.741462 | 4.2:-24091461 | MS.gene39592:CDS |
| AAACAATAACTGGATCTGGG+GGG | 0.752214 | 4.2:-24088010 | MS.gene39592:CDS |
| GGAAGCACACTAGATAGACG+CGG | 0.760671 | 4.2:+24098084 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 24086730 | 24098499 | 24086730 | ID=MS.gene39592 |
| chr4.2 | mRNA | 24086730 | 24098499 | 24086730 | ID=MS.gene39592.t1;Parent=MS.gene39592 |
| chr4.2 | exon | 24098394 | 24098499 | 24098394 | ID=MS.gene39592.t1.exon1;Parent=MS.gene39592.t1 |
| chr4.2 | CDS | 24098394 | 24098499 | 24098394 | ID=cds.MS.gene39592.t1;Parent=MS.gene39592.t1 |
| chr4.2 | exon | 24097865 | 24098267 | 24097865 | ID=MS.gene39592.t1.exon2;Parent=MS.gene39592.t1 |
| chr4.2 | CDS | 24097865 | 24098267 | 24097865 | ID=cds.MS.gene39592.t1;Parent=MS.gene39592.t1 |
| chr4.2 | exon | 24097598 | 24097775 | 24097598 | ID=MS.gene39592.t1.exon3;Parent=MS.gene39592.t1 |
| chr4.2 | CDS | 24097598 | 24097775 | 24097598 | ID=cds.MS.gene39592.t1;Parent=MS.gene39592.t1 |
| chr4.2 | exon | 24097357 | 24097496 | 24097357 | ID=MS.gene39592.t1.exon4;Parent=MS.gene39592.t1 |
| chr4.2 | CDS | 24097357 | 24097496 | 24097357 | ID=cds.MS.gene39592.t1;Parent=MS.gene39592.t1 |
| chr4.2 | exon | 24093965 | 24094832 | 24093965 | ID=MS.gene39592.t1.exon5;Parent=MS.gene39592.t1 |
| chr4.2 | CDS | 24093965 | 24094832 | 24093965 | ID=cds.MS.gene39592.t1;Parent=MS.gene39592.t1 |
| chr4.2 | exon | 24093686 | 24093786 | 24093686 | ID=MS.gene39592.t1.exon6;Parent=MS.gene39592.t1 |
| chr4.2 | CDS | 24093686 | 24093786 | 24093686 | ID=cds.MS.gene39592.t1;Parent=MS.gene39592.t1 |
| chr4.2 | exon | 24093089 | 24093233 | 24093089 | ID=MS.gene39592.t1.exon7;Parent=MS.gene39592.t1 |
| chr4.2 | CDS | 24093089 | 24093233 | 24093089 | ID=cds.MS.gene39592.t1;Parent=MS.gene39592.t1 |
| chr4.2 | exon | 24092730 | 24092798 | 24092730 | ID=MS.gene39592.t1.exon8;Parent=MS.gene39592.t1 |
| chr4.2 | CDS | 24092730 | 24092798 | 24092730 | ID=cds.MS.gene39592.t1;Parent=MS.gene39592.t1 |
| chr4.2 | exon | 24092558 | 24092603 | 24092558 | ID=MS.gene39592.t1.exon9;Parent=MS.gene39592.t1 |
| chr4.2 | CDS | 24092558 | 24092603 | 24092558 | ID=cds.MS.gene39592.t1;Parent=MS.gene39592.t1 |
| chr4.2 | exon | 24091063 | 24091508 | 24091063 | ID=MS.gene39592.t1.exon10;Parent=MS.gene39592.t1 |
| chr4.2 | CDS | 24091063 | 24091508 | 24091063 | ID=cds.MS.gene39592.t1;Parent=MS.gene39592.t1 |
| chr4.2 | exon | 24089659 | 24089738 | 24089659 | ID=MS.gene39592.t1.exon11;Parent=MS.gene39592.t1 |
| chr4.2 | CDS | 24089659 | 24089738 | 24089659 | ID=cds.MS.gene39592.t1;Parent=MS.gene39592.t1 |
| chr4.2 | exon | 24088801 | 24088936 | 24088801 | ID=MS.gene39592.t1.exon12;Parent=MS.gene39592.t1 |
| chr4.2 | CDS | 24088801 | 24088936 | 24088801 | ID=cds.MS.gene39592.t1;Parent=MS.gene39592.t1 |
| chr4.2 | exon | 24087922 | 24088114 | 24087922 | ID=MS.gene39592.t1.exon13;Parent=MS.gene39592.t1 |
| chr4.2 | CDS | 24087922 | 24088114 | 24087922 | ID=cds.MS.gene39592.t1;Parent=MS.gene39592.t1 |
| chr4.2 | exon | 24086973 | 24087055 | 24086973 | ID=MS.gene39592.t1.exon14;Parent=MS.gene39592.t1 |
| chr4.2 | CDS | 24086973 | 24087055 | 24086973 | ID=cds.MS.gene39592.t1;Parent=MS.gene39592.t1 |
| chr4.2 | exon | 24086730 | 24086855 | 24086730 | ID=MS.gene39592.t1.exon15;Parent=MS.gene39592.t1 |
| chr4.2 | CDS | 24086730 | 24086855 | 24086730 | ID=cds.MS.gene39592.t1;Parent=MS.gene39592.t1 |
| Gene Sequence |
| Protein sequence |
