Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39663.t1 | XP_003626830.1 | 97 | 198 | 6 | 0 | 1 | 198 | 11 | 208 | 8.30E-104 | 386.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39663.t1 | O04905 | 83.7 | 196 | 30 | 1 | 3 | 198 | 8 | 201 | 1.4e-91 | 337.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39663.t1 | B7FMF1 | 97.0 | 198 | 6 | 0 | 1 | 198 | 11 | 208 | 6.0e-104 | 386.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050084 | MS.gene39663 | 0.800329 | 1.52E-48 | -1.69E-46 |
| MS.gene050085 | MS.gene39663 | 0.805429 | 1.34E-49 | -1.69E-46 |
| MS.gene057144 | MS.gene39663 | 0.833005 | 6.84E-56 | -1.69E-46 |
| MS.gene057145 | MS.gene39663 | 0.832729 | 8.01E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene39663 | MS.gene057156 | PPI |
| MS.gene39663 | MS.gene011389 | PPI |
| MS.gene39663 | MS.gene065461 | PPI |
| MS.gene39663 | MS.gene033347 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39663.t1 | MTR_8g009520 | 96.970 | 198 | 6 | 0 | 1 | 198 | 11 | 208 | 2.45e-142 | 395 |
| MS.gene39663.t1 | MTR_4g035850 | 60.753 | 186 | 73 | 0 | 12 | 197 | 32 | 217 | 3.74e-81 | 241 |
| MS.gene39663.t1 | MTR_5g068940 | 60.753 | 186 | 73 | 0 | 12 | 197 | 32 | 217 | 5.42e-81 | 240 |
| MS.gene39663.t1 | MTR_4g035850 | 60.753 | 186 | 73 | 0 | 12 | 197 | 55 | 240 | 1.09e-80 | 240 |
| MS.gene39663.t1 | MTR_2g461290 | 27.751 | 209 | 121 | 4 | 10 | 191 | 71 | 276 | 7.76e-24 | 98.6 |
| MS.gene39663.t1 | MTR_4g035170 | 34.375 | 128 | 81 | 2 | 9 | 134 | 85 | 211 | 9.37e-24 | 95.9 |
| MS.gene39663.t1 | MTR_4g103800 | 26.066 | 211 | 123 | 4 | 14 | 191 | 32 | 242 | 6.79e-20 | 84.3 |
| MS.gene39663.t1 | MTR_1g067050 | 25.888 | 197 | 101 | 4 | 17 | 170 | 59 | 253 | 2.75e-16 | 75.5 |
| MS.gene39663.t1 | MTR_7g100530 | 24.424 | 217 | 122 | 4 | 8 | 183 | 34 | 249 | 1.40e-15 | 73.2 |
| MS.gene39663.t1 | MTR_4g103800 | 32.184 | 87 | 58 | 1 | 14 | 99 | 32 | 118 | 4.53e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39663.t1 | AT5G26667 | 83.249 | 197 | 31 | 1 | 2 | 198 | 7 | 201 | 1.00e-122 | 345 |
| MS.gene39663.t1 | AT5G26667 | 83.249 | 197 | 31 | 1 | 2 | 198 | 7 | 201 | 1.00e-122 | 345 |
| MS.gene39663.t1 | AT5G26667 | 83.249 | 197 | 31 | 1 | 2 | 198 | 7 | 201 | 1.00e-122 | 345 |
| MS.gene39663.t1 | AT5G26667 | 84.103 | 195 | 29 | 1 | 2 | 196 | 7 | 199 | 1.88e-122 | 345 |
| MS.gene39663.t1 | AT3G60180 | 74.863 | 183 | 46 | 0 | 9 | 191 | 19 | 201 | 4.33e-105 | 301 |
| MS.gene39663.t1 | AT3G60180 | 74.863 | 183 | 46 | 0 | 9 | 191 | 19 | 201 | 4.33e-105 | 301 |
| MS.gene39663.t1 | AT4G25280 | 60.109 | 183 | 73 | 0 | 9 | 191 | 51 | 233 | 8.73e-79 | 236 |
| MS.gene39663.t1 | AT4G25280 | 60.109 | 183 | 73 | 0 | 9 | 191 | 51 | 233 | 8.73e-79 | 236 |
| MS.gene39663.t1 | AT3G60961 | 68.421 | 133 | 38 | 1 | 63 | 191 | 1 | 133 | 4.52e-66 | 199 |
| MS.gene39663.t1 | AT5G35170 | 29.665 | 209 | 117 | 4 | 10 | 191 | 78 | 283 | 3.48e-27 | 108 |
| MS.gene39663.t1 | AT5G35170 | 29.665 | 209 | 117 | 4 | 10 | 191 | 78 | 283 | 3.48e-27 | 108 |
| MS.gene39663.t1 | AT5G47840 | 30.144 | 209 | 116 | 4 | 10 | 191 | 63 | 268 | 1.08e-26 | 103 |
| MS.gene39663.t1 | AT5G47840 | 37.008 | 127 | 77 | 2 | 10 | 134 | 63 | 188 | 4.50e-26 | 101 |
| MS.gene39663.t1 | AT5G63400 | 27.488 | 211 | 120 | 4 | 14 | 191 | 36 | 246 | 1.20e-20 | 86.7 |
| MS.gene39663.t1 | AT5G50370 | 27.723 | 202 | 112 | 5 | 13 | 181 | 37 | 237 | 3.22e-18 | 80.1 |
| MS.gene39663.t1 | AT2G37250 | 25.238 | 210 | 112 | 3 | 17 | 183 | 57 | 264 | 1.75e-16 | 75.9 |
| MS.gene39663.t1 | AT2G39270 | 27.411 | 197 | 98 | 4 | 17 | 170 | 70 | 264 | 1.87e-15 | 73.2 |
| MS.gene39663.t1 | AT5G63400 | 31.200 | 125 | 82 | 2 | 14 | 134 | 36 | 160 | 5.02e-14 | 67.8 |
| MS.gene39663.t1 | AT5G50370 | 27.072 | 181 | 98 | 5 | 13 | 160 | 37 | 216 | 5.37e-14 | 68.6 |
Find 44 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATCTGGCTCCGAAAA+TGG | 0.173136 | 8.3:+79501578 | MS.gene39663:CDS |
| TTCCTTCTTTAATCATATTC+TGG | 0.194476 | 8.3:-79501909 | None:intergenic |
| GCAAATGTTGTCGAACATTT+TGG | 0.209865 | 8.3:+79501515 | MS.gene39663:CDS |
| CGTCTCTCCATTTCTTCCTC+TGG | 0.293885 | 8.3:-79502202 | None:intergenic |
| AATGACAAATTTCTTATTGA+TGG | 0.306611 | 8.3:+79501991 | MS.gene39663:CDS |
| TTCGACAACATTTGCACATT+GGG | 0.333869 | 8.3:-79501507 | None:intergenic |
| ACGACAACATTGAAACAATA+AGG | 0.372468 | 8.3:+79502349 | MS.gene39663:CDS |
| CCTACAGTTGTGTTTGTGTT+AGG | 0.377583 | 8.3:+79500845 | MS.gene39663:CDS |
| CCTCTGGGCAATCAAAATAT+AGG | 0.386242 | 8.3:-79502186 | None:intergenic |
| GTCTCTCCATTTCTTCCTCT+GGG | 0.403856 | 8.3:-79502201 | None:intergenic |
| CTGCGAGCGGAAATCAAATC+TGG | 0.406089 | 8.3:+79501566 | MS.gene39663:CDS |
| TGATTGCCCAGAGGAAGAAA+TGG | 0.417731 | 8.3:+79502195 | MS.gene39663:CDS |
| GACTCAAATACCTCCTCAAC+AGG | 0.418858 | 8.3:-79502547 | None:intergenic |
| TGATAATGGTACAGGTGGTC+CGG | 0.428269 | 8.3:+79501469 | MS.gene39663:intron |
| TTCCTTCCGAGGTAACAATT+AGG | 0.429145 | 8.3:+79501938 | MS.gene39663:CDS |
| ATTAATTATTATGATGCAAA+GGG | 0.443787 | 8.3:+79502411 | MS.gene39663:CDS |
| AACAATAAGGAAGCGATTCA+AGG | 0.444129 | 8.3:+79502362 | MS.gene39663:CDS |
| TCAAATCTGGCTCCGAAAAT+GGG | 0.446253 | 8.3:+79501579 | MS.gene39663:CDS |
| GGGTTTACTCACCTCAGTGC+TGG | 0.448432 | 8.3:+79501536 | MS.gene39663:CDS |
| GGTACAGGTGGTCCGGGCAG+TGG | 0.454545 | 8.3:+79501476 | MS.gene39663:intron |
| ATTTATTTGTAGGATACAAA+TGG | 0.459331 | 8.3:+79500803 | None:intergenic |
| TGGAGAGACGACTTCTTAGT+AGG | 0.467613 | 8.3:+79502215 | MS.gene39663:CDS |
| GGTGGTCCGGGCAGTGGAAA+AGG | 0.473432 | 8.3:+79501482 | MS.gene39663:intron |
| TCAAAATATAGGACAAATGT+TGG | 0.497184 | 8.3:-79502175 | None:intergenic |
| ATCCAGAATATGATTAAAGA+AGG | 0.504467 | 8.3:+79501907 | MS.gene39663:CDS |
| GCATCATAATAATTAATCAC+AGG | 0.514630 | 8.3:-79502405 | None:intergenic |
| GATAATGGTACAGGTGGTCC+GGG | 0.533653 | 8.3:+79501470 | MS.gene39663:intron |
| AGCCTAATTGTTACCTCGGA+AGG | 0.535061 | 8.3:-79501940 | None:intergenic |
| GTTCGACAACATTTGCACAT+TGG | 0.539900 | 8.3:-79501508 | None:intergenic |
| GATTAATTATTATGATGCAA+AGG | 0.546499 | 8.3:+79502410 | MS.gene39663:CDS |
| ATTTGATTTCCGCTCGCAGA+AGG | 0.550406 | 8.3:-79501562 | None:intergenic |
| CAGAAGCCTAATTGTTACCT+CGG | 0.555573 | 8.3:-79501944 | None:intergenic |
| CCGTGCAGCATTTGAGAGAG+TGG | 0.571248 | 8.3:+79502035 | MS.gene39663:CDS |
| TGCTGGTGACCTTCTGCGAG+CGG | 0.575371 | 8.3:+79501553 | MS.gene39663:CDS |
| CATCATAATAATTAATCACA+GGG | 0.576231 | 8.3:-79502404 | None:intergenic |
| CCTAACACAAACACAACTGT+AGG | 0.576692 | 8.3:-79500845 | None:intergenic |
| TGTTGAGGAGGTATTTGAGT+CGG | 0.603618 | 8.3:+79502549 | MS.gene39663:CDS |
| TGCTGCAAGGCCTGTTGAGG+AGG | 0.615003 | 8.3:+79502537 | MS.gene39663:CDS |
| CCACTCTCTCAAATGCTGCA+CGG | 0.625742 | 8.3:-79502035 | None:intergenic |
| TGATGCTGCAAGGCCTGTTG+AGG | 0.626580 | 8.3:+79502534 | MS.gene39663:CDS |
| TGCAAAGGGAAAAGTTCGCA+AGG | 0.641623 | 8.3:+79502425 | MS.gene39663:CDS |
| ACGACTTCTTAGTAGGAACC+AGG | 0.649336 | 8.3:+79502222 | MS.gene39663:CDS |
| CAACAAGCAATGCAAGACAG+TGG | 0.683184 | 8.3:+79501967 | MS.gene39663:CDS |
| GCAGAAGGTCACCAGCACTG+AGG | 0.757069 | 8.3:-79501547 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATATGATAAAGTAAA+AGG | - | chr8.3:79502867-79502886 | None:intergenic | 10.0% |
| !! | TAAAATATGATAAAGTAAAA+GGG | - | chr8.3:79502866-79502885 | None:intergenic | 10.0% |
| !! | TTAAATTTAAATAAAGATAC+TGG | + | chr8.3:79503025-79503044 | MS.gene39663:intron | 10.0% |
| !!! | AAAATTTTGAAAATGATATT+GGG | + | chr8.3:79503234-79503253 | MS.gene39663:intron | 10.0% |
| !! | ATTAATTATTATGATGCAAA+GGG | + | chr8.3:79502411-79502430 | MS.gene39663:CDS | 15.0% |
| !! | TATTGATCTAATAATGATAA+TGG | + | chr8.3:79501455-79501474 | MS.gene39663:intron | 15.0% |
| !!! | CAAAATTTTGAAAATGATAT+TGG | + | chr8.3:79503233-79503252 | MS.gene39663:intron | 15.0% |
| !! | AATGACAAATTTCTTATTGA+TGG | + | chr8.3:79501991-79502010 | MS.gene39663:CDS | 20.0% |
| !! | AATTATAATTTCAATGTGCT+TGG | - | chr8.3:79503393-79503412 | None:intergenic | 20.0% |
| !! | AATTTCTATGTATTTATGCT+AGG | + | chr8.3:79501753-79501772 | MS.gene39663:intron | 20.0% |
| !! | ACTATTTCAAAAGAAGAAAA+GGG | - | chr8.3:79501665-79501684 | None:intergenic | 20.0% |
| !! | ATTAAGAACAATATTAACAG+TGG | + | chr8.3:79502939-79502958 | MS.gene39663:intron | 20.0% |
| !! | CATCATAATAATTAATCACA+GGG | - | chr8.3:79502407-79502426 | None:intergenic | 20.0% |
| !! | GATTAATTATTATGATGCAA+AGG | + | chr8.3:79502410-79502429 | MS.gene39663:CDS | 20.0% |
| !! | GCTTATTTATGTTTATCTTA+AGG | - | chr8.3:79501232-79501251 | None:intergenic | 20.0% |
| !! | TACTATTTCAAAAGAAGAAA+AGG | - | chr8.3:79501666-79501685 | None:intergenic | 20.0% |
| !! | TTTATTTAAAAACTCATGCA+AGG | - | chr8.3:79502769-79502788 | None:intergenic | 20.0% |
| !! | TTTCTATCAAAGAGAAAATT+TGG | + | chr8.3:79502655-79502674 | MS.gene39663:intron | 20.0% |
| !!! | ACTGCTTGTTATAAATAAAT+TGG | - | chr8.3:79500977-79500996 | None:intergenic | 20.0% |
| !!! | ATATAATTTGTACCCATTTT+CGG | - | chr8.3:79501594-79501613 | None:intergenic | 20.0% |
| !!! | ATTTGTTTTACAATGCATTA+TGG | + | chr8.3:79502885-79502904 | MS.gene39663:intron | 20.0% |
| !!! | ATTTTCTCTTTGATAGAAAA+TGG | - | chr8.3:79502654-79502673 | None:intergenic | 20.0% |
| !!! | TCTTCTTTTGAAATAGTAAA+TGG | + | chr8.3:79501668-79501687 | MS.gene39663:intron | 20.0% |
| ! | ACAAGATATTCAACTGATAT+AGG | + | chr8.3:79501067-79501086 | MS.gene39663:intron | 25.0% |
| ! | ATAAATACATTCGCTTTCAA+AGG | - | chr8.3:79501353-79501372 | None:intergenic | 25.0% |
| ! | ATACTGGATATCAATGATAA+AGG | + | chr8.3:79502317-79502336 | MS.gene39663:intron | 25.0% |
| ! | ATCCAGAATATGATTAAAGA+AGG | + | chr8.3:79501907-79501926 | MS.gene39663:CDS | 25.0% |
| ! | ATGTATTGCATAATAGTGTA+GGG | - | chr8.3:79502255-79502274 | None:intergenic | 25.0% |
| ! | ATGTATTTATGCTAGGTTAT+TGG | + | chr8.3:79501760-79501779 | MS.gene39663:intron | 25.0% |
| ! | ATTCAACTGATATAGGTATT+CGG | + | chr8.3:79501074-79501093 | MS.gene39663:intron | 25.0% |
| ! | CATAAATAGTCAAATGCATT+AGG | - | chr8.3:79500927-79500946 | None:intergenic | 25.0% |
| ! | CCAAATATAAAACTAATTGC+CGG | + | chr8.3:79503071-79503090 | MS.gene39663:intron | 25.0% |
| ! | GCATCATAATAATTAATCAC+AGG | - | chr8.3:79502408-79502427 | None:intergenic | 25.0% |
| ! | TAAATACATTCGCTTTCAAA+GGG | - | chr8.3:79501352-79501371 | None:intergenic | 25.0% |
| ! | TACTGGATATCAATGATAAA+GGG | + | chr8.3:79502318-79502337 | MS.gene39663:intron | 25.0% |
| ! | TATGTATTGCATAATAGTGT+AGG | - | chr8.3:79502256-79502275 | None:intergenic | 25.0% |
| ! | TCAAAATATAGGACAAATGT+TGG | - | chr8.3:79502178-79502197 | None:intergenic | 25.0% |
| ! | TGTATTTATGCTAGGTTATT+GGG | + | chr8.3:79501761-79501780 | MS.gene39663:intron | 25.0% |
| ! | TTCCTTCTTTAATCATATTC+TGG | - | chr8.3:79501912-79501931 | None:intergenic | 25.0% |
| ! | TTTATTGTTGAAGTTGTTTG+TGG | + | chr8.3:79501399-79501418 | MS.gene39663:intron | 25.0% |
| !!! | CAACTGTAGGTTTTTTATTT+AGG | - | chr8.3:79500835-79500854 | None:intergenic | 25.0% |
| !!! | TATTAAGCACTGAAAACATA+AGG | - | chr8.3:79502300-79502319 | None:intergenic | 25.0% |
| !!! | TCTAATAATGATAATGGTAC+AGG | + | chr8.3:79501461-79501480 | MS.gene39663:intron | 25.0% |
| !!! | TGATTTACCTTCTCATTTTT+TGG | - | chr8.3:79502592-79502611 | None:intergenic | 25.0% |
| ACGACAACATTGAAACAATA+AGG | + | chr8.3:79502349-79502368 | MS.gene39663:CDS | 30.0% | |
| ACTGGCATAAACAAATTCAT+TGG | + | chr8.3:79503043-79503062 | MS.gene39663:intron | 30.0% | |
| ACTGTAAGAATTTACAGAAG+CGG | - | chr8.3:79503282-79503301 | None:intergenic | 30.0% | |
| AGTAAGATTAAAACAGCTTG+TGG | + | chr8.3:79501148-79501167 | MS.gene39663:intron | 30.0% | |
| ATTCAAAGGTAAGATGACTA+TGG | - | chr8.3:79500888-79500907 | None:intergenic | 30.0% | |
| ATTTCAACTATGGATGCATT+TGG | - | chr8.3:79501259-79501278 | None:intergenic | 30.0% | |
| CAGGAATTGATGTTTATCTA+TGG | + | chr8.3:79503488-79503507 | MS.gene39663:intron | 30.0% | |
| CATAGATAAACATCAATTCC+TGG | - | chr8.3:79503490-79503509 | None:intergenic | 30.0% | |
| CCAACTGGTATAATTGTATT+CGG | + | chr8.3:79503169-79503188 | MS.gene39663:intron | 30.0% | |
| CTAATTTCCTAAATGCATCA+TGG | + | chr8.3:79502132-79502151 | MS.gene39663:intron | 30.0% | |
| CTATAAACAATCAGTGAAAC+AGG | - | chr8.3:79501641-79501660 | None:intergenic | 30.0% | |
| GATGCATTTAGGAAATTAGA+AGG | - | chr8.3:79502131-79502150 | None:intergenic | 30.0% | |
| GCTATTGCAAACTTAACTTA+AGG | + | chr8.3:79501287-79501306 | MS.gene39663:intron | 30.0% | |
| GTAAGATTAAAACAGCTTGT+GGG | + | chr8.3:79501149-79501168 | MS.gene39663:intron | 30.0% | |
| GTTTACTTGTTTAGCATCAA+TGG | + | chr8.3:79503307-79503326 | MS.gene39663:intron | 30.0% | |
| TAAGTTAAGTTTGCAATAGC+TGG | - | chr8.3:79501287-79501306 | None:intergenic | 30.0% | |
| TGTTTATCTATGGTATTTGC+AGG | + | chr8.3:79503498-79503517 | MS.gene39663:intron | 30.0% | |
| TTTACTAACAGCTCATTCAA+AGG | - | chr8.3:79500902-79500921 | None:intergenic | 30.0% | |
| TTTCAGTCCAAAAAATGAGA+AGG | + | chr8.3:79502582-79502601 | MS.gene39663:CDS | 30.0% | |
| ! | ATGTTTTCAGTGCTTAATAC+TGG | + | chr8.3:79502301-79502320 | MS.gene39663:intron | 30.0% |
| ! | CAAATGTTGTCGAACATTTT+GGG | + | chr8.3:79501516-79501535 | MS.gene39663:CDS | 30.0% |
| ! | GACATTACATTACCTGTTTT+AGG | + | chr8.3:79502510-79502529 | MS.gene39663:intron | 30.0% |
| ! | GTTTTACAATGCATTATGGA+CGG | + | chr8.3:79502889-79502908 | MS.gene39663:intron | 30.0% |
| ! | TTATGACTTGTCTGACAAAT+TGG | + | chr8.3:79503348-79503367 | MS.gene39663:intron | 30.0% |
| !! | AATAATGATAATGGTACAGG+TGG | + | chr8.3:79501464-79501483 | MS.gene39663:intron | 30.0% |
| !! | TAGTAAATGGCTAGCTTTAT+AGG | + | chr8.3:79501681-79501700 | MS.gene39663:intron | 30.0% |
| !! | TCATTGTGCTGTTTAAAATC+AGG | - | chr8.3:79501888-79501907 | None:intergenic | 30.0% |
| !!! | CCGGCAATTAGTTTTATATT+TGG | - | chr8.3:79503074-79503093 | None:intergenic | 30.0% |
| !!! | TGTGTGTGTTTTGTTTTGAA+AGG | - | chr8.3:79501199-79501218 | None:intergenic | 30.0% |
| AACAATAAGGAAGCGATTCA+AGG | + | chr8.3:79502362-79502381 | MS.gene39663:CDS | 35.0% | |
| ACACAATAGAGACAGACAAA+TGG | - | chr8.3:79501380-79501399 | None:intergenic | 35.0% | |
| AGTTGAATATCTTGTCGAGA+GGG | - | chr8.3:79501062-79501081 | None:intergenic | 35.0% | |
| ATGTTGATACACACAAGTCT+AGG | - | chr8.3:79503195-79503214 | None:intergenic | 35.0% | |
| CCGAATACAATTATACCAGT+TGG | - | chr8.3:79503172-79503191 | None:intergenic | 35.0% | |
| GCTGGTATACATTTCAACTA+TGG | - | chr8.3:79501269-79501288 | None:intergenic | 35.0% | |
| TCAATTCCTGGAAAACATTG+CGG | - | chr8.3:79503478-79503497 | None:intergenic | 35.0% | |
| TTCGACAACATTTGCACATT+GGG | - | chr8.3:79501510-79501529 | None:intergenic | 35.0% | |
| TTGGAACTTCCTTAGAATAC+AGG | + | chr8.3:79503367-79503386 | MS.gene39663:intron | 35.0% | |
| ! | ATTTTGTACCTTCCTAGTGT+TGG | - | chr8.3:79503219-79503238 | None:intergenic | 35.0% |
| ! | GCAAATGTTGTCGAACATTT+TGG | + | chr8.3:79501515-79501534 | MS.gene39663:CDS | 35.0% |
| !! | CTACTTTTCTTTGTACCAAC+TGG | + | chr8.3:79503154-79503173 | MS.gene39663:intron | 35.0% |
| !! | CTAGTTCTATAAGCTCTCAT+GGG | + | chr8.3:79501114-79501133 | MS.gene39663:intron | 35.0% |
| !! | TTGTCTTTTCTCAAAAGCAC+AGG | - | chr8.3:79503104-79503123 | None:intergenic | 35.0% |
| ACAAGAAACTCACCAAGACA+TGG | - | chr8.3:79502472-79502491 | None:intergenic | 40.0% | |
| AGGAAAAATTGTTCCTTCCG+AGG | + | chr8.3:79501927-79501946 | MS.gene39663:CDS | 40.0% | |
| ATAGTGTAGGGTCTATTACC+TGG | - | chr8.3:79502243-79502262 | None:intergenic | 40.0% | |
| CAATCAGTGAAACAGGACTA+CGG | - | chr8.3:79501634-79501653 | None:intergenic | 40.0% | |
| CAGAAGCCTAATTGTTACCT+CGG | - | chr8.3:79501947-79501966 | None:intergenic | 40.0% | |
| CAGTTGAATATCTTGTCGAG+AGG | - | chr8.3:79501063-79501082 | None:intergenic | 40.0% | |
| CCTAACACAAACACAACTGT+AGG | - | chr8.3:79500848-79500867 | None:intergenic | 40.0% | |
| CCTACAGTTGTGTTTGTGTT+AGG | + | chr8.3:79500845-79500864 | MS.gene39663:CDS | 40.0% | |
| CCTCTGGGCAATCAAAATAT+AGG | - | chr8.3:79502189-79502208 | None:intergenic | 40.0% | |
| GGTAGTACATTTATCTGCTC+AGG | - | chr8.3:79502110-79502129 | None:intergenic | 40.0% | |
| GTAATGTCCTTTAGCACATG+AGG | - | chr8.3:79502498-79502517 | None:intergenic | 40.0% | |
| GTTCGACAACATTTGCACAT+TGG | - | chr8.3:79501511-79501530 | None:intergenic | 40.0% | |
| TGCAAAGCCATGATGCATTT+AGG | - | chr8.3:79502142-79502161 | None:intergenic | 40.0% | |
| TGTATCAACATGCCAACACT+AGG | + | chr8.3:79503204-79503223 | MS.gene39663:intron | 40.0% | |
| TTCCTTCCGAGGTAACAATT+AGG | + | chr8.3:79501938-79501957 | MS.gene39663:CDS | 40.0% | |
| TTGCAGCATCAACCTAAAAC+AGG | - | chr8.3:79502525-79502544 | None:intergenic | 40.0% | |
| TTGTTTGCCTCATGTGCTAA+AGG | + | chr8.3:79502488-79502507 | MS.gene39663:intron | 40.0% | |
| ! | ATCAAATCTGGCTCCGAAAA+TGG | + | chr8.3:79501578-79501597 | MS.gene39663:CDS | 40.0% |
| ! | GAAGCGATTCAAGGTTTTCT+TGG | + | chr8.3:79502371-79502390 | MS.gene39663:CDS | 40.0% |
| ! | GTTGTGTTTCTACCATGTCT+TGG | + | chr8.3:79502457-79502476 | MS.gene39663:intron | 40.0% |
| ! | TCAAATCTGGCTCCGAAAAT+GGG | + | chr8.3:79501579-79501598 | MS.gene39663:CDS | 40.0% |
| ! | TTCAAACCGCAATGTTTTCC+AGG | + | chr8.3:79503469-79503488 | MS.gene39663:intron | 40.0% |
| !! | GCTAGTTCTATAAGCTCTCA+TGG | + | chr8.3:79501113-79501132 | MS.gene39663:intron | 40.0% |
| !! | TGTTGAGGAGGTATTTGAGT+CGG | + | chr8.3:79502549-79502568 | MS.gene39663:CDS | 40.0% |
| !!! | CCTATATTTTGATTGCCCAG+AGG | + | chr8.3:79502186-79502205 | MS.gene39663:CDS | 40.0% |
| !!! | TGTTTTAGGTTGATGCTGCA+AGG | + | chr8.3:79502524-79502543 | MS.gene39663:intron | 40.0% |
| ACGACTTCTTAGTAGGAACC+AGG | + | chr8.3:79502222-79502241 | MS.gene39663:CDS | 45.0% | |
| AGCCTAATTGTTACCTCGGA+AGG | - | chr8.3:79501943-79501962 | None:intergenic | 45.0% | |
| CAACAAGCAATGCAAGACAG+TGG | + | chr8.3:79501967-79501986 | MS.gene39663:CDS | 45.0% | |
| CAATGCTCAGAAGTTGACGT+TGG | - | chr8.3:79501801-79501820 | None:intergenic | 45.0% | |
| CAGCTTAAACTCGATGCAGA+TGG | - | chr8.3:79501835-79501854 | None:intergenic | 45.0% | |
| GACTCAAATACCTCCTCAAC+AGG | - | chr8.3:79502550-79502569 | None:intergenic | 45.0% | |
| GGACTACGGATCTATCACTA+CGG | - | chr8.3:79501620-79501639 | None:intergenic | 45.0% | |
| GTCTCTCCATTTCTTCCTCT+GGG | - | chr8.3:79502204-79502223 | None:intergenic | 45.0% | |
| TCAACATGCCAACACTAGGA+AGG | + | chr8.3:79503208-79503227 | MS.gene39663:intron | 45.0% | |
| TGATTGCCCAGAGGAAGAAA+TGG | + | chr8.3:79502195-79502214 | MS.gene39663:CDS | 45.0% | |
| TGCAAAGGGAAAAGTTCGCA+AGG | + | chr8.3:79502425-79502444 | MS.gene39663:CDS | 45.0% | |
| TGGAGAGACGACTTCTTAGT+AGG | + | chr8.3:79502215-79502234 | MS.gene39663:CDS | 45.0% | |
| TGTGCTTGGCCTGTATTCTA+AGG | - | chr8.3:79503379-79503398 | None:intergenic | 45.0% | |
| ! | AGCTCTCATGGGAAGCTTTT+TGG | + | chr8.3:79501125-79501144 | MS.gene39663:intron | 45.0% |
| ! | ATTTGATTTCCGCTCGCAGA+AGG | - | chr8.3:79501565-79501584 | None:intergenic | 45.0% |
| ! | TGATGGTTTTCCTCGCAATG+AGG | + | chr8.3:79502008-79502027 | MS.gene39663:CDS | 45.0% |
| !! | TGATAATGGTACAGGTGGTC+CGG | + | chr8.3:79501469-79501488 | MS.gene39663:intron | 45.0% |
| CCACTCTCTCAAATGCTGCA+CGG | - | chr8.3:79502038-79502057 | None:intergenic | 50.0% | |
| CGTCTCTCCATTTCTTCCTC+TGG | - | chr8.3:79502205-79502224 | None:intergenic | 50.0% | |
| CTCAGAAGTTGACGTTGGTC+AGG | - | chr8.3:79501796-79501815 | None:intergenic | 50.0% | |
| CTGCGAGCGGAAATCAAATC+TGG | + | chr8.3:79501566-79501585 | MS.gene39663:CDS | 50.0% | |
| ! | CAAAAGCACAGGTTGTGAGC+CGG | - | chr8.3:79503093-79503112 | None:intergenic | 50.0% |
| ! | GATAATGGTACAGGTGGTCC+GGG | + | chr8.3:79501470-79501489 | MS.gene39663:intron | 50.0% |
| ! | TGCATCATGGCTTTGCAGAC+TGG | + | chr8.3:79502145-79502164 | MS.gene39663:intron | 50.0% |
| CCGTGCAGCATTTGAGAGAG+TGG | + | chr8.3:79502035-79502054 | MS.gene39663:CDS | 55.0% | |
| GGGTTTACTCACCTCAGTGC+TGG | + | chr8.3:79501536-79501555 | MS.gene39663:CDS | 55.0% | |
| TGATGCTGCAAGGCCTGTTG+AGG | + | chr8.3:79502534-79502553 | MS.gene39663:CDS | 55.0% | |
| ! | GCACGGTTTTCCTCATTGCG+AGG | - | chr8.3:79502021-79502040 | None:intergenic | 55.0% |
| ! | TGGGTACCTTTTCCACTGCC+CGG | - | chr8.3:79501491-79501510 | None:intergenic | 55.0% |
| GCAGAAGGTCACCAGCACTG+AGG | - | chr8.3:79501550-79501569 | None:intergenic | 60.0% | |
| TGCTGCAAGGCCTGTTGAGG+AGG | + | chr8.3:79502537-79502556 | MS.gene39663:CDS | 60.0% | |
| TGCTGGTGACCTTCTGCGAG+CGG | + | chr8.3:79501553-79501572 | MS.gene39663:CDS | 60.0% | |
| GGTGGTCCGGGCAGTGGAAA+AGG | + | chr8.3:79501482-79501501 | MS.gene39663:intron | 65.0% | |
| GGTACAGGTGGTCCGGGCAG+TGG | + | chr8.3:79501476-79501495 | MS.gene39663:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 79500815 | 79503528 | 79500815 | ID=MS.gene39663 |
| chr8.3 | mRNA | 79500815 | 79503528 | 79500815 | ID=MS.gene39663.t1;Parent=MS.gene39663 |
| chr8.3 | exon | 79500815 | 79500866 | 79500815 | ID=MS.gene39663.t1.exon1;Parent=MS.gene39663.t1 |
| chr8.3 | CDS | 79500815 | 79500866 | 79500815 | ID=cds.MS.gene39663.t1;Parent=MS.gene39663.t1 |
| chr8.3 | exon | 79501483 | 79501600 | 79501483 | ID=MS.gene39663.t1.exon2;Parent=MS.gene39663.t1 |
| chr8.3 | CDS | 79501483 | 79501600 | 79501483 | ID=cds.MS.gene39663.t1;Parent=MS.gene39663.t1 |
| chr8.3 | exon | 79501900 | 79502056 | 79501900 | ID=MS.gene39663.t1.exon3;Parent=MS.gene39663.t1 |
| chr8.3 | CDS | 79501900 | 79502056 | 79501900 | ID=cds.MS.gene39663.t1;Parent=MS.gene39663.t1 |
| chr8.3 | exon | 79502163 | 79502243 | 79502163 | ID=MS.gene39663.t1.exon4;Parent=MS.gene39663.t1 |
| chr8.3 | CDS | 79502163 | 79502243 | 79502163 | ID=cds.MS.gene39663.t1;Parent=MS.gene39663.t1 |
| chr8.3 | exon | 79502339 | 79502446 | 79502339 | ID=MS.gene39663.t1.exon5;Parent=MS.gene39663.t1 |
| chr8.3 | CDS | 79502339 | 79502446 | 79502339 | ID=cds.MS.gene39663.t1;Parent=MS.gene39663.t1 |
| chr8.3 | exon | 79502532 | 79502603 | 79502532 | ID=MS.gene39663.t1.exon6;Parent=MS.gene39663.t1 |
| chr8.3 | CDS | 79502532 | 79502603 | 79502532 | ID=cds.MS.gene39663.t1;Parent=MS.gene39663.t1 |
| chr8.3 | exon | 79503520 | 79503528 | 79503520 | ID=MS.gene39663.t1.exon7;Parent=MS.gene39663.t1 |
| chr8.3 | CDS | 79503520 | 79503528 | 79503520 | ID=cds.MS.gene39663.t1;Parent=MS.gene39663.t1 |
| Gene Sequence |
| Protein sequence |
