AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057144


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057144.t1 MTR_4g104080 99.483 387 2 0 1 387 1 387 0.0 783
MS.gene057144.t1 MTR_8g046560 84.342 281 25 4 86 366 260 521 2.15e-156 451
MS.gene057144.t1 MTR_8g464820 95.673 208 8 1 96 303 160 366 2.77e-141 406
MS.gene057144.t1 MTR_7g076160 24.291 247 180 3 127 371 173 414 5.65e-19 88.6
MS.gene057144.t1 MTR_8g432630 23.481 362 254 11 23 371 65 416 1.54e-18 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057144.t1 AT4G24820 82.687 387 67 0 1 387 1 387 0.0 661
MS.gene057144.t1 AT4G24820 82.687 387 67 0 1 387 1 387 0.0 661
MS.gene057144.t1 AT3G61140 25.100 251 180 4 124 372 169 413 5.59e-18 85.5

Find 76 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGAAGTCTCCTTGCTTAA+TGG 0.172394 8.1:-20386476 None:intergenic
TTTAGCTTTGTCAATGCTTT+TGG 0.209748 8.1:-20385392 None:intergenic
CGATCACACGAGACAGTTTC+TGG 0.218957 8.1:-20386510 None:intergenic
ACATTGCAGCTTGGTTTCTT+TGG 0.250558 8.1:+20385349 MS.gene057144:CDS
CCTAGTTGCTGATTCCGTTT+TGG 0.319218 8.1:+20383301 MS.gene057144:CDS
GTAAAATATAAAGGTGTCAT+AGG 0.319394 8.1:-20385656 None:intergenic
GAAGGCGGCCACATTGTTCT+TGG 0.328664 8.1:+20385597 MS.gene057144:CDS
GGATATGGATCGTGTCCTTT+TGG 0.338072 8.1:+20383322 MS.gene057144:CDS
GCAACTAGGGTTTCGTATAA+AGG 0.352561 8.1:-20383287 None:intergenic
AAAGCATTGACAAAGCTAAA+AGG 0.352604 8.1:+20385395 MS.gene057144:CDS
AAGTCTTTCTTCTCAGCATT+TGG 0.381841 8.1:+20385926 MS.gene057144:CDS
CTTGAACATCTTGTTGTTTG+AGG 0.383548 8.1:-20383124 None:intergenic
CTGCCCAACTGCAACAGTCT+TGG 0.384938 8.1:-20385305 None:intergenic
CAAAACGGTGTAAAATATAA+AGG 0.388515 8.1:-20385665 None:intergenic
AAGGAGACTTCTTGTTGAAC+AGG 0.394711 8.1:+20386485 MS.gene057144:CDS
TGTAAGATTGATAAAGTTGC+AGG 0.397494 8.1:+20386403 MS.gene057144:CDS
TAAAGAGCATTCTTAGCATC+AGG 0.401822 8.1:-20386445 None:intergenic
GAAGCCATGGCAAAAGCGTT+TGG 0.405490 8.1:+20386219 MS.gene057144:CDS
TCAATCACTGTCAAGATCTC+AGG 0.407014 8.1:-20385851 None:intergenic
GTCTCGTGTGATCGATCTTT+AGG 0.409640 8.1:+20386519 MS.gene057144:CDS
CTTGTATTGACAACCATATA+AGG 0.412125 8.1:-20385906 None:intergenic
GCTATTTGCATCCACACTTC+CGG 0.415118 8.1:+20386127 MS.gene057144:CDS
CTCCTTGCTTAATGGTTGCT+TGG 0.422700 8.1:-20386468 None:intergenic
CAGAGTTTCCTTAAAACAAA+AGG 0.442207 8.1:+20385708 MS.gene057144:CDS
CCAACTTAATTTGCTCCGTC+AGG 0.445020 8.1:-20386101 None:intergenic
CCAAAACGGAATCAGCAACT+AGG 0.455755 8.1:-20383301 None:intergenic
GCAGCTTGGTTTCTTTGGCA+TGG 0.461721 8.1:+20385354 MS.gene057144:CDS
TGTTTGAAGAAGGTGGTGAC+TGG 0.465631 8.1:+20385512 MS.gene057144:CDS
TGTTATTATGCTGGTCAAAA+CGG 0.481534 8.1:-20385680 None:intergenic
AAGAAGGTGGTGACTGGGAA+AGG 0.487909 8.1:+20385518 MS.gene057144:CDS
TACATACCTTGTCCCCAATC+CGG 0.495723 8.1:-20385170 None:intergenic
TGAAGTTCGTGAGGCTCACT+TGG 0.496675 8.1:+20385128 MS.gene057144:CDS
TTTGAGGAGGAAAAGCTTGT+CGG 0.496982 8.1:-20383108 None:intergenic
TTTCATCCGGATTGGGGACA+AGG 0.498726 8.1:+20385164 MS.gene057144:CDS
TATGACAGCTTGTTTGAAGA+AGG 0.509351 8.1:+20385502 MS.gene057144:intron
GTATTCTATACATTGCAGCT+TGG 0.510078 8.1:+20385340 MS.gene057144:CDS
TGTTGCAGTTGGGCAGAAGA+TGG 0.511519 8.1:+20385312 MS.gene057144:CDS
TTTGACCAGCATAATAACAT+TGG 0.511922 8.1:+20385684 MS.gene057144:CDS
TTCAATTTCGTCAAGGAACA+TGG 0.512182 8.1:+20383179 MS.gene057144:CDS
TGATCTCTCTCATGTAATAC+CGG 0.514625 8.1:-20386146 None:intergenic
TCTGTCCAATGTTATTATGC+TGG 0.519046 8.1:-20385689 None:intergenic
GTGACTGGGAAAGGAAGAAT+AGG 0.520244 8.1:+20385527 MS.gene057144:CDS
TGTTATCTTGAGATGCTCCA+AGG 0.535770 8.1:-20385278 None:intergenic
AAACCAAGACTGTTGCAGTT+GGG 0.539841 8.1:+20385302 MS.gene057144:CDS
GCTGATGCCGAGGAAAACTT+AGG 0.544982 8.1:+20385099 MS.gene057144:CDS
TAAAATATAAAGGTGTCATA+GGG 0.545376 8.1:-20385655 None:intergenic
GACACGATCCATATCCAAAA+CGG 0.546950 8.1:-20383315 None:intergenic
GAAACCAAGACTGTTGCAGT+TGG 0.547733 8.1:+20385301 MS.gene057144:CDS
CCTGACGGAGCAAATTAAGT+TGG 0.551415 8.1:+20386101 MS.gene057144:CDS
TAGCACGCATGGAGTCCAAA+AGG 0.551715 8.1:-20383337 None:intergenic
ATAGGTAGTAAAGGTTGAGA+TGG 0.554018 8.1:-20385623 None:intergenic
TATGCACCAGGAGAAAGCCT+TGG 0.557453 8.1:+20385261 MS.gene057144:intron
CAAAACGGAATCAGCAACTA+GGG 0.569243 8.1:-20383300 None:intergenic
GAGTGTGACAATTGAAGCCA+TGG 0.570854 8.1:+20386206 MS.gene057144:CDS
ATCGCGTCAATGGCAAATGA+AGG 0.573429 8.1:+20383053 None:intergenic
CTCATGTAATACCGGAAGTG+TGG 0.574056 8.1:-20386138 None:intergenic
ATTCATTTCAGCTGGCCTGA+CGG 0.578789 8.1:+20386086 MS.gene057144:intron
AATAGGCTGAAAGTGTATGA+AGG 0.580095 8.1:+20385544 MS.gene057144:CDS
GAACATCTTGTTGTTTGAGG+AGG 0.589500 8.1:-20383121 None:intergenic
TACCAAGCAACCATTAAGCA+AGG 0.592283 8.1:+20386466 MS.gene057144:CDS
GTTTGAAGAAGGTGGTGACT+GGG 0.592873 8.1:+20385513 MS.gene057144:CDS
TTCGAGTGGACATGCAGTAG+AGG 0.594533 8.1:-20385567 None:intergenic
GCTGCAATGTATAGAATACC+AGG 0.602890 8.1:-20385336 None:intergenic
GGAGGAAAAGCTTGTCGGCG+AGG 0.605693 8.1:-20383103 None:intergenic
CACTCGAAATTTCGAGAAGG+CGG 0.611108 8.1:+20385582 MS.gene057144:CDS
CGCCTTCTCGAAATTTCGAG+TGG 0.620270 8.1:-20385581 None:intergenic
TTGTCGGCGAGGACAAGTTG+TGG 0.627071 8.1:-20383092 None:intergenic
AAAGAGCATTCTTAGCATCA+GGG 0.643450 8.1:-20386444 None:intergenic
AAAAGCGTTTGGAGTATCTG+TGG 0.655763 8.1:+20386230 MS.gene057144:CDS
GGAAGTGTGGATGCAAATAG+CGG 0.661860 8.1:-20386125 None:intergenic
AGGTGAGAGTGAAGTTCGTG+AGG 0.662611 8.1:+20385119 MS.gene057144:CDS
GTCCACTCGAAATTTCGAGA+AGG 0.663292 8.1:+20385579 MS.gene057144:CDS
AGTTGGGCAGAAGATGGACC+TGG 0.674047 8.1:+20385318 MS.gene057144:CDS
GACAGCTTGTTTGAAGAAGG+TGG 0.675197 8.1:+20385505 MS.gene057144:intron
GAGCATTCTTAGCATCAGGG+CGG 0.753729 8.1:-20386441 None:intergenic
GATGGAATCCAAGAACAATG+TGG 0.760047 8.1:-20385605 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAGAAAATTTATTTAATA+GGG + chr8.1:20383470-20383489 MS.gene057144:intron 10.0%
!! TTGAAGAAAATTTATTTAAT+AGG + chr8.1:20383469-20383488 MS.gene057144:intron 10.0%
!! TCAATAAATACATATCTTAA+TGG + chr8.1:20384415-20384434 MS.gene057144:intron 15.0%
!! TGAAAAACAAAAGAAAATTA+GGG - chr8.1:20383256-20383275 None:intergenic 15.0%
!! TTATATAGTGAAGAAAATTA+GGG - chr8.1:20383232-20383251 None:intergenic 15.0%
!! TTTATATAGTGAAGAAAATT+AGG - chr8.1:20383233-20383252 None:intergenic 15.0%
!!! TATAATTTTCTGTTAAGAAT+GGG + chr8.1:20385459-20385478 MS.gene057144:intron 15.0%
!! AAAATCCAAAATTCACAATT+GGG - chr8.1:20383432-20383451 None:intergenic 20.0%
!! ATATATCCTAGAAAGATTAA+TGG - chr8.1:20384830-20384849 None:intergenic 20.0%
!! ATTACATATATTTGTTTCCA+GGG + chr8.1:20386345-20386364 MS.gene057144:intron 20.0%
!! CAATATGTAAAAATAAACTC+TGG - chr8.1:20384046-20384065 None:intergenic 20.0%
!! GTGAAAAACAAAAGAAAATT+AGG - chr8.1:20383257-20383276 None:intergenic 20.0%
!! TATATCCTAGAAAGATTAAT+GGG - chr8.1:20384829-20384848 None:intergenic 20.0%
!! TTAACAGAAAATTATAGCAA+AGG - chr8.1:20385455-20385474 None:intergenic 20.0%
!! TTGAATTGTACTAATGTATT+TGG + chr8.1:20383542-20383561 MS.gene057144:intron 20.0%
!!! ACAACTTATTCATCATTTTT+AGG - chr8.1:20384296-20384315 None:intergenic 20.0%
!!! CTATAATTTTCTGTTAAGAA+TGG + chr8.1:20385458-20385477 MS.gene057144:intron 20.0%
!!! TAAAATATAAAGGTGTCATA+GGG - chr8.1:20385658-20385677 None:intergenic 20.0%
! AAAAAGTTCATAGGTAGTAA+AGG - chr8.1:20385635-20385654 None:intergenic 25.0%
! AAATCCAAAATTCACAATTG+GGG - chr8.1:20383431-20383450 None:intergenic 25.0%
! AATTACCCATTAATCTTTCT+AGG + chr8.1:20384821-20384840 MS.gene057144:intron 25.0%
! AGAAAAGATAAATGGTGTAA+AGG - chr8.1:20385759-20385778 None:intergenic 25.0%
! CAAAACGGTGTAAAATATAA+AGG - chr8.1:20385668-20385687 None:intergenic 25.0%
! CAAAATCCAAAATTCACAAT+TGG - chr8.1:20383433-20383452 None:intergenic 25.0%
! CATTACATATATTTGTTTCC+AGG + chr8.1:20386344-20386363 MS.gene057144:intron 25.0%
! CGGTTAAAAGAAAAGATAAA+TGG - chr8.1:20385767-20385786 None:intergenic 25.0%
! TAAAACAACCAAGAAAGAAA+AGG + chr8.1:20384391-20384410 MS.gene057144:intron 25.0%
! TGATTAGATTACAATGTTGT+GGG + chr8.1:20386313-20386332 MS.gene057144:intron 25.0%
! TTGATTAGATTACAATGTTG+TGG + chr8.1:20386312-20386331 MS.gene057144:intron 25.0%
!! AAATAATAGTTTGTATCTCG+AGG - chr8.1:20385014-20385033 None:intergenic 25.0%
!! AATTCTAGAGATTCTTGAAT+AGG - chr8.1:20383809-20383828 None:intergenic 25.0%
!! ATTCTAGAGATTCTTGAATA+GGG - chr8.1:20383808-20383827 None:intergenic 25.0%
!! TCATATGAATGTCTCATTTT+AGG + chr8.1:20385073-20385092 MS.gene057144:intron 25.0%
!! TCTGTTCTTAAATGTTTTAC+TGG + chr8.1:20383575-20383594 MS.gene057144:intron 25.0%
!! TTATTGATCCTTTTCTTTCT+TGG - chr8.1:20384402-20384421 None:intergenic 25.0%
!!! ATTTTGAAATTCATTTCAGC+TGG + chr8.1:20386078-20386097 MS.gene057144:intron 25.0%
!!! CAAAATCCTTATTTTTCATC+CGG + chr8.1:20385151-20385170 MS.gene057144:CDS 25.0%
!!! GTAAAATATAAAGGTGTCAT+AGG - chr8.1:20385659-20385678 None:intergenic 25.0%
!!! TAGAAGTACCTTTTGTTTTA+AGG - chr8.1:20385719-20385738 None:intergenic 25.0%
!!! TATTTTTACATATTGTGACC+TGG + chr8.1:20384051-20384070 MS.gene057144:intron 25.0%
AAACGAAAAACCAAGTGATT+TGG - chr8.1:20386284-20386303 None:intergenic 30.0%
AAATCGACATATGATCTGAA+TGG - chr8.1:20383897-20383916 None:intergenic 30.0%
AACGAAAAACCAAGTGATTT+GGG - chr8.1:20386283-20386302 None:intergenic 30.0%
AAGTACAAAACCTAGAATAC+TGG + chr8.1:20384922-20384941 MS.gene057144:intron 30.0%
AGTACAAAACCTAGAATACT+GGG + chr8.1:20384923-20384942 MS.gene057144:intron 30.0%
AGTATAATGAGTCTTTGTTG+GGG + chr8.1:20383939-20383958 MS.gene057144:intron 30.0%
CAGAGTTTCCTTAAAACAAA+AGG + chr8.1:20385708-20385727 MS.gene057144:CDS 30.0%
CTTGTAAGATTCCAAAAACT+GGG - chr8.1:20386187-20386206 None:intergenic 30.0%
GAACATAGAAGCAAAAAGAT+AGG - chr8.1:20386045-20386064 None:intergenic 30.0%
GAGTATAATGAGTCTTTGTT+GGG + chr8.1:20383938-20383957 MS.gene057144:intron 30.0%
GTGAAGAAAATTAGGGTTTA+CGG - chr8.1:20383225-20383244 None:intergenic 30.0%
TCTTGTAAGATTCCAAAAAC+TGG - chr8.1:20386188-20386207 None:intergenic 30.0%
TGAGTATAATGAGTCTTTGT+TGG + chr8.1:20383937-20383956 MS.gene057144:intron 30.0%
TGTAAGATTGATAAAGTTGC+AGG + chr8.1:20386403-20386422 MS.gene057144:CDS 30.0%
TGTTATTATGCTGGTCAAAA+CGG - chr8.1:20385683-20385702 None:intergenic 30.0%
TTTACATGATGCTACATCAT+TGG - chr8.1:20384443-20384462 None:intergenic 30.0%
TTTGACCAGCATAATAACAT+TGG + chr8.1:20385684-20385703 MS.gene057144:CDS 30.0%
! ACTGTTTCTTTCCTTGATTA+TGG - chr8.1:20384241-20384260 None:intergenic 30.0%
! AGATGTTTTCAATTTCGTCA+AGG + chr8.1:20383172-20383191 MS.gene057144:CDS 30.0%
! ATCAAGGAAAGAAACAGTTT+TGG + chr8.1:20384243-20384262 MS.gene057144:intron 30.0%
! CAAAACTTTCATTTTCACTC+TGG + chr8.1:20384579-20384598 MS.gene057144:intron 30.0%
! CAGAGTGAAAATGAAAGTTT+TGG - chr8.1:20384581-20384600 None:intergenic 30.0%
! CTTGTATTGACAACCATATA+AGG - chr8.1:20385909-20385928 None:intergenic 30.0%
! TAACTAGACTAATTTGCATC+AGG + chr8.1:20385817-20385836 MS.gene057144:intron 30.0%
! TCCACATCTTAAAGAGTTTT+TGG + chr8.1:20385880-20385899 MS.gene057144:CDS 30.0%
! TTAACCCCAATTGTGAATTT+TGG + chr8.1:20383424-20383443 MS.gene057144:intron 30.0%
! TTTTGGATTTTGAATGCACT+AGG + chr8.1:20383441-20383460 MS.gene057144:intron 30.0%
!! AAAGCATTGACAAAGCTAAA+AGG + chr8.1:20385395-20385414 MS.gene057144:CDS 30.0%
!! CTTAGTTCTATATGGATGTA+TGG - chr8.1:20384340-20384359 None:intergenic 30.0%
!! TAGAATCACTTTTGAAGATG+TGG - chr8.1:20384735-20384754 None:intergenic 30.0%
!! TCCAAAAACTCTTTAAGATG+TGG - chr8.1:20385884-20385903 None:intergenic 30.0%
!! TGTCATTTATTCCCAGTTTT+TGG + chr8.1:20386173-20386192 MS.gene057144:CDS 30.0%
!!! TCTTTTGTTTTTCACAGACA+TGG + chr8.1:20383262-20383281 MS.gene057144:intron 30.0%
!!! TTTAGCTTTGTCAATGCTTT+TGG - chr8.1:20385395-20385414 None:intergenic 30.0%
AAAAACCCCAGAATAAGCAA+GGG - chr8.1:20384080-20384099 None:intergenic 35.0%
AAATAGCAAAGCAACGAAGA+GGG - chr8.1:20384695-20384714 None:intergenic 35.0%
AACTTCAATCAAACTGCTAG+AGG - chr8.1:20383842-20383861 None:intergenic 35.0%
AAGTCTTTCTTCTCAGCATT+TGG + chr8.1:20385926-20385945 MS.gene057144:CDS 35.0%
ACTTCAATCAAACTGCTAGA+GGG - chr8.1:20383841-20383860 None:intergenic 35.0%
AGAATAGAAAATGCAAAGGC+TGG + chr8.1:20384946-20384965 MS.gene057144:intron 35.0%
ATAGGTAGTAAAGGTTGAGA+TGG - chr8.1:20385626-20385645 None:intergenic 35.0%
CATGGAAATCACCATAATCA+AGG + chr8.1:20384227-20384246 MS.gene057144:intron 35.0%
CCATATAGAACTAAGCTAGT+TGG + chr8.1:20384345-20384364 MS.gene057144:intron 35.0%
CTTGATTATGGTGATTTCCA+TGG - chr8.1:20384229-20384248 None:intergenic 35.0%
GCAGTTTGATTGAAGTTGAA+CGG + chr8.1:20383845-20383864 MS.gene057144:intron 35.0%
GCCAAGAAATAACAGAACAA+CGG - chr8.1:20385787-20385806 None:intergenic 35.0%
GTATAATGAGTCTTTGTTGG+GGG + chr8.1:20383940-20383959 MS.gene057144:intron 35.0%
GTATTCTATACATTGCAGCT+TGG + chr8.1:20385340-20385359 MS.gene057144:CDS 35.0%
GTCATAGGGAAAAAGTTCAT+AGG - chr8.1:20385644-20385663 None:intergenic 35.0%
TATAGAACTAAGCTAGTTGG+AGG + chr8.1:20384348-20384367 MS.gene057144:intron 35.0%
TATATACCCAATGTCACCAA+TGG + chr8.1:20384149-20384168 MS.gene057144:intron 35.0%
TATGAGCTATCGTTAGTACA+AGG - chr8.1:20385058-20385077 None:intergenic 35.0%
TCCAAACATACTTCTTTAGC+AGG - chr8.1:20383767-20383786 None:intergenic 35.0%
TCTGTCCAATGTTATTATGC+TGG - chr8.1:20385692-20385711 None:intergenic 35.0%
TCTTCAAACAAGCTGTCATA+TGG - chr8.1:20385502-20385521 None:intergenic 35.0%
TGATCTCTCTCATGTAATAC+CGG - chr8.1:20386149-20386168 None:intergenic 35.0%
TGCAATTACTATGACACATC+TGG - chr8.1:20384973-20384992 None:intergenic 35.0%
TGGGAGAATAGAAAATGCAA+AGG + chr8.1:20384942-20384961 MS.gene057144:intron 35.0%
TTAATAATAACCGCAGAGAC+AGG - chr8.1:20384803-20384822 None:intergenic 35.0%
TTAGATTACAATGTTGTGGG+AGG + chr8.1:20386316-20386335 MS.gene057144:intron 35.0%
TTCAATTTCGTCAAGGAACA+TGG + chr8.1:20383179-20383198 MS.gene057144:CDS 35.0%
TTCTATTCTCCCAGTATTCT+AGG - chr8.1:20384935-20384954 None:intergenic 35.0%
! AATAGGCTGAAAGTGTATGA+AGG + chr8.1:20385544-20385563 MS.gene057144:CDS 35.0%
! ATTTTCATCTGTCAGCTCAA+AGG - chr8.1:20384545-20384564 None:intergenic 35.0%
! TATGACAGCTTGTTTGAAGA+AGG + chr8.1:20385502-20385521 MS.gene057144:intron 35.0%
! TCCTGCTAAAGAAGTATGTT+TGG + chr8.1:20383763-20383782 MS.gene057144:intron 35.0%
!! AAAGAGCATTCTTAGCATCA+GGG - chr8.1:20386447-20386466 None:intergenic 35.0%
!! ACCGTTGTTCTGTTATTTCT+TGG + chr8.1:20385783-20385802 MS.gene057144:intron 35.0%
!! ATCATCAATTTTAGCACGCA+TGG - chr8.1:20383351-20383370 None:intergenic 35.0%
!! CCAACTAGCTTAGTTCTATA+TGG - chr8.1:20384348-20384367 None:intergenic 35.0%
!! CTTATTTTTCATCCGGATTG+GGG + chr8.1:20385158-20385177 MS.gene057144:CDS 35.0%
!! CTTGAACATCTTGTTGTTTG+AGG - chr8.1:20383127-20383146 None:intergenic 35.0%
!! GAGTTTTTGGACTCCTTATA+TGG + chr8.1:20385893-20385912 MS.gene057144:CDS 35.0%
!! TAAAGAGCATTCTTAGCATC+AGG - chr8.1:20386448-20386467 None:intergenic 35.0%
!! TATCACGTTTTATTGCAGCT+GGG + chr8.1:20386371-20386390 MS.gene057144:CDS 35.0%
!!! CCTTATTTTTCATCCGGATT+GGG + chr8.1:20385157-20385176 MS.gene057144:CDS 35.0%
!!! TCCTTATTTTTCATCCGGAT+TGG + chr8.1:20385156-20385175 MS.gene057144:CDS 35.0%
!!! TGTTTTGAGGCTAGCTATTA+TGG - chr8.1:20384186-20384205 None:intergenic 35.0%
AAACCAAGACTGTTGCAGTT+GGG + chr8.1:20385302-20385321 MS.gene057144:CDS 40.0%
AAGGAGACTTCTTGTTGAAC+AGG + chr8.1:20386485-20386504 MS.gene057144:CDS 40.0%
AATAAAACGTGATAGCTCCC+TGG - chr8.1:20386365-20386384 None:intergenic 40.0%
ACATTGCAGCTTGGTTTCTT+TGG + chr8.1:20385349-20385368 MS.gene057144:CDS 40.0%
ATTCTTGAATAGGGAACACG+TGG - chr8.1:20383799-20383818 None:intergenic 40.0%
CAAAACGGAATCAGCAACTA+GGG - chr8.1:20383303-20383322 None:intergenic 40.0%
CAAATAGCAAAGCAACGAAG+AGG - chr8.1:20384696-20384715 None:intergenic 40.0%
CAAGAAGTCTCCTTGCTTAA+TGG - chr8.1:20386479-20386498 None:intergenic 40.0%
CAATGTCACCAATGGCTTAT+GGG + chr8.1:20384157-20384176 MS.gene057144:intron 40.0%
CAGGCTAAATTTCATCCATC+AGG - chr8.1:20384784-20384803 None:intergenic 40.0%
CCATCAGGAATTCTAAGTTC+AGG - chr8.1:20384769-20384788 None:intergenic 40.0%
CCCAATCCGGATGAAAAATA+AGG - chr8.1:20385160-20385179 None:intergenic 40.0%
CCTGAACTTAGAATTCCTGA+TGG + chr8.1:20384766-20384785 MS.gene057144:intron 40.0%
CTTCAATCAAACTGCTAGAG+GGG - chr8.1:20383840-20383859 None:intergenic 40.0%
GAAAAACCCCAGAATAAGCA+AGG - chr8.1:20384081-20384100 None:intergenic 40.0%
GACACGATCCATATCCAAAA+CGG - chr8.1:20383318-20383337 None:intergenic 40.0%
GATGGAATCCAAGAACAATG+TGG - chr8.1:20385608-20385627 None:intergenic 40.0%
GCAACTAGGGTTTCGTATAA+AGG - chr8.1:20383290-20383309 None:intergenic 40.0%
GCTGCAATGTATAGAATACC+AGG - chr8.1:20385339-20385358 None:intergenic 40.0%
TACCAAGCAACCATTAAGCA+AGG + chr8.1:20386466-20386485 MS.gene057144:CDS 40.0%
TCAATCACTGTCAAGATCTC+AGG - chr8.1:20385854-20385873 None:intergenic 40.0%
TGAAATTTAGCCTGTCTCTG+CGG + chr8.1:20384790-20384809 MS.gene057144:intron 40.0%
TGAATGCATCCCAAATCACT+TGG + chr8.1:20386271-20386290 MS.gene057144:intron 40.0%
TGTTATCTTGAGATGCTCCA+AGG - chr8.1:20385281-20385300 None:intergenic 40.0%
TTCAATCAAACTGCTAGAGG+GGG - chr8.1:20383839-20383858 None:intergenic 40.0%
TTTGAGGAGGAAAAGCTTGT+CGG - chr8.1:20383111-20383130 None:intergenic 40.0%
! ACTCTCACCTAAGTTTTCCT+CGG - chr8.1:20385109-20385128 None:intergenic 40.0%
! CAAAGGCTGGTGATTTTTCA+GGG - chr8.1:20384528-20384547 None:intergenic 40.0%
! CATAAGCCATTGGTGACATT+GGG - chr8.1:20384158-20384177 None:intergenic 40.0%
! GACTAATTTGCATCAGGTAG+TGG + chr8.1:20385823-20385842 MS.gene057144:intron 40.0%
! TCAAAGGCTGGTGATTTTTC+AGG - chr8.1:20384529-20384548 None:intergenic 40.0%
! TTTGAGGCTAGCTATTATGG+TGG - chr8.1:20384183-20384202 None:intergenic 40.0%
!! AAAAGCGTTTGGAGTATCTG+TGG + chr8.1:20386230-20386249 MS.gene057144:CDS 40.0%
!! CTATCACGTTTTATTGCAGC+TGG + chr8.1:20386370-20386389 MS.gene057144:CDS 40.0%
!! CTCTTCGTTGCTTTGCTATT+TGG + chr8.1:20384694-20384713 MS.gene057144:intron 40.0%
!! GAACATCTTGTTGTTTGAGG+AGG - chr8.1:20383124-20383143 None:intergenic 40.0%
!!! TGCTGATTCCGTTTTGGATA+TGG + chr8.1:20383307-20383326 MS.gene057144:CDS 40.0%
ACTGTAGGACATCTTCAGTC+TGG - chr8.1:20384669-20384688 None:intergenic 45.0%
ACTTGATTCCAGCAGCAGAA+AGG - chr8.1:20385228-20385247 None:intergenic 45.0%
CACTCGAAATTTCGAGAAGG+CGG + chr8.1:20385582-20385601 MS.gene057144:CDS 45.0%
CATGGCATCTACCATTCACT+GGG - chr8.1:20384211-20384230 None:intergenic 45.0%
CCAAAACGGAATCAGCAACT+AGG - chr8.1:20383304-20383323 None:intergenic 45.0%
CCAATGTCACCAATGGCTTA+TGG + chr8.1:20384156-20384175 MS.gene057144:intron 45.0%
CCTGACGGAGCAAATTAAGT+TGG + chr8.1:20386101-20386120 MS.gene057144:CDS 45.0%
CTCAAAACATGCCCAGTGAA+TGG + chr8.1:20384197-20384216 MS.gene057144:intron 45.0%
CTCATGTAATACCGGAAGTG+TGG - chr8.1:20386141-20386160 None:intergenic 45.0%
CTCCTTGCTTAATGGTTGCT+TGG - chr8.1:20386471-20386490 None:intergenic 45.0%
GAAACCAAGACTGTTGCAGT+TGG + chr8.1:20385301-20385320 MS.gene057144:CDS 45.0%
GAGTGTGACAATTGAAGCCA+TGG + chr8.1:20386206-20386225 MS.gene057144:CDS 45.0%
GCTATTTGCATCCACACTTC+CGG + chr8.1:20386127-20386146 MS.gene057144:CDS 45.0%
GTCCACTCGAAATTTCGAGA+AGG + chr8.1:20385579-20385598 MS.gene057144:CDS 45.0%
GTGACTGGGAAAGGAAGAAT+AGG + chr8.1:20385527-20385546 MS.gene057144:CDS 45.0%
GTTTGAAGAAGGTGGTGACT+GGG + chr8.1:20385513-20385532 MS.gene057144:CDS 45.0%
TACATACCTTGTCCCCAATC+CGG - chr8.1:20385173-20385192 None:intergenic 45.0%
TGGTCACCCTTGCTTATTCT+GGG + chr8.1:20384071-20384090 MS.gene057144:intron 45.0%
TGTTTGAAGAAGGTGGTGAC+TGG + chr8.1:20385512-20385531 MS.gene057144:CDS 45.0%
TTCCAGCAGCAGAAAGGAAA+AGG - chr8.1:20385222-20385241 None:intergenic 45.0%
! AGTGAGGTGGACATTGACTA+TGG - chr8.1:20384624-20384643 None:intergenic 45.0%
! ATTCATTTCAGCTGGCCTGA+CGG + chr8.1:20386086-20386105 MS.gene057144:intron 45.0%
! CATTCACTGGGCATGTTTTG+AGG - chr8.1:20384199-20384218 None:intergenic 45.0%
! CATTTTCACTCTGGCAGAGA+AGG + chr8.1:20384588-20384607 MS.gene057144:intron 45.0%
! CCATAAGCCATTGGTGACAT+TGG - chr8.1:20384159-20384178 None:intergenic 45.0%
! GACAGCTTGTTTGAAGAAGG+TGG + chr8.1:20385505-20385524 MS.gene057144:intron 45.0%
! GGAAGTGTGGATGCAAATAG+CGG - chr8.1:20386128-20386147 None:intergenic 45.0%
! GGATATGGATCGTGTCCTTT+TGG + chr8.1:20383322-20383341 MS.gene057144:CDS 45.0%
! TACTCCAAACGCTTTTGCCA+TGG - chr8.1:20386226-20386245 None:intergenic 45.0%
! TTCCTTTTCCTTTCTGCTGC+TGG + chr8.1:20385217-20385236 MS.gene057144:intron 45.0%
!! CCAACTTAATTTGCTCCGTC+AGG - chr8.1:20386104-20386123 None:intergenic 45.0%
!!! CCTAGTTGCTGATTCCGTTT+TGG + chr8.1:20383301-20383320 MS.gene057144:CDS 45.0%
!!! GGTGATTTTTCAGGGCACAA+CGG - chr8.1:20384520-20384539 None:intergenic 45.0%
!!! TTTTAGGATTGCTGATGCCG+AGG + chr8.1:20385089-20385108 MS.gene057144:intron 45.0%
AACACTGTCCTCTATGCACC+AGG + chr8.1:20385249-20385268 MS.gene057144:intron 50.0%
AAGAAGGTGGTGACTGGGAA+AGG + chr8.1:20385518-20385537 MS.gene057144:CDS 50.0%
AATGTCCACCTCACTTGAGG+AGG + chr8.1:20384629-20384648 MS.gene057144:intron 50.0%
AGGGTTTACGGAGAGAGAAG+AGG - chr8.1:20383213-20383232 None:intergenic 50.0%
AGGTGAGAGTGAAGTTCGTG+AGG + chr8.1:20385119-20385138 MS.gene057144:CDS 50.0%
CAACGAAGAGGGTTCACTGT+AGG - chr8.1:20384684-20384703 None:intergenic 50.0%
CAGAATAAGCAAGGGTGACC+AGG - chr8.1:20384072-20384091 None:intergenic 50.0%
CCAGTGAATGGTAGATGCCA+TGG + chr8.1:20384209-20384228 MS.gene057144:intron 50.0%
CCATGGCATCTACCATTCAC+TGG - chr8.1:20384212-20384231 None:intergenic 50.0%
CGATCACACGAGACAGTTTC+TGG - chr8.1:20386513-20386532 None:intergenic 50.0%
CGCCTTCTCGAAATTTCGAG+TGG - chr8.1:20385584-20385603 None:intergenic 50.0%
CTGGTCACCCTTGCTTATTC+TGG + chr8.1:20384070-20384089 MS.gene057144:intron 50.0%
GAGCATTCTTAGCATCAGGG+CGG - chr8.1:20386444-20386463 None:intergenic 50.0%
GCAGCTTGGTTTCTTTGGCA+TGG + chr8.1:20385354-20385373 MS.gene057144:CDS 50.0%
GCTGATGCCGAGGAAAACTT+AGG + chr8.1:20385099-20385118 MS.gene057144:CDS 50.0%
GGGTTTACGGAGAGAGAAGA+GGG - chr8.1:20383212-20383231 None:intergenic 50.0%
GGTCACCCTTGCTTATTCTG+GGG + chr8.1:20384072-20384091 MS.gene057144:intron 50.0%
GTCAATGTCCACCTCACTTG+AGG + chr8.1:20384626-20384645 MS.gene057144:intron 50.0%
TAGCACGCATGGAGTCCAAA+AGG - chr8.1:20383340-20383359 None:intergenic 50.0%
TATGCACCAGGAGAAAGCCT+TGG + chr8.1:20385261-20385280 MS.gene057144:intron 50.0%
TATGGTGGCCCATAAGCCAT+TGG - chr8.1:20384168-20384187 None:intergenic 50.0%
TCATCTGTCAGCTCAAAGGC+TGG - chr8.1:20384541-20384560 None:intergenic 50.0%
TGAAGTTCGTGAGGCTCACT+TGG + chr8.1:20385128-20385147 MS.gene057144:CDS 50.0%
TGTTGCAGTTGGGCAGAAGA+TGG + chr8.1:20385312-20385331 MS.gene057144:CDS 50.0%
TTCGAGTGGACATGCAGTAG+AGG - chr8.1:20385570-20385589 None:intergenic 50.0%
! TTTCATCCGGATTGGGGACA+AGG + chr8.1:20385164-20385183 MS.gene057144:CDS 50.0%
!! GAAGCCATGGCAAAAGCGTT+TGG + chr8.1:20386219-20386238 MS.gene057144:CDS 50.0%
AGTTGGGCAGAAGATGGACC+TGG + chr8.1:20385318-20385337 MS.gene057144:CDS 55.0%
CATTGCAGCCTCCTCAAGTG+AGG - chr8.1:20384640-20384659 None:intergenic 55.0%
CTGCCCAACTGCAACAGTCT+TGG - chr8.1:20385308-20385327 None:intergenic 55.0%
GAAGGCGGCCACATTGTTCT+TGG + chr8.1:20385597-20385616 MS.gene057144:CDS 55.0%
GATGCTCCAAGGCTTTCTCC+TGG - chr8.1:20385270-20385289 None:intergenic 55.0%
GGCTTTCTCCTGGTGCATAG+AGG - chr8.1:20385260-20385279 None:intergenic 55.0%
TTGTCGGCGAGGACAAGTTG+TGG - chr8.1:20383095-20383114 None:intergenic 55.0%
GGAGGAAAAGCTTGTCGGCG+AGG - chr8.1:20383106-20383125 None:intergenic 60.0%
TGCAGCCTCCTCAAGTGAGG+TGG - chr8.1:20384637-20384656 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 20383062 20386540 20383062 ID=MS.gene057144
chr8.1 mRNA 20383062 20386540 20383062 ID=MS.gene057144.t1;Parent=MS.gene057144
chr8.1 exon 20383062 20383200 20383062 ID=MS.gene057144.t1.exon1;Parent=MS.gene057144.t1
chr8.1 CDS 20383062 20383200 20383062 ID=cds.MS.gene057144.t1;Parent=MS.gene057144.t1
chr8.1 exon 20383279 20383393 20383279 ID=MS.gene057144.t1.exon2;Parent=MS.gene057144.t1
chr8.1 CDS 20383279 20383393 20383279 ID=cds.MS.gene057144.t1;Parent=MS.gene057144.t1
chr8.1 exon 20385095 20385185 20385095 ID=MS.gene057144.t1.exon3;Parent=MS.gene057144.t1
chr8.1 CDS 20385095 20385185 20385095 ID=cds.MS.gene057144.t1;Parent=MS.gene057144.t1
chr8.1 exon 20385271 20385416 20385271 ID=MS.gene057144.t1.exon4;Parent=MS.gene057144.t1
chr8.1 CDS 20385271 20385416 20385271 ID=cds.MS.gene057144.t1;Parent=MS.gene057144.t1
chr8.1 exon 20385510 20385729 20385510 ID=MS.gene057144.t1.exon5;Parent=MS.gene057144.t1
chr8.1 CDS 20385510 20385729 20385510 ID=cds.MS.gene057144.t1;Parent=MS.gene057144.t1
chr8.1 exon 20385839 20385947 20385839 ID=MS.gene057144.t1.exon6;Parent=MS.gene057144.t1
chr8.1 CDS 20385839 20385947 20385839 ID=cds.MS.gene057144.t1;Parent=MS.gene057144.t1
chr8.1 exon 20386097 20386265 20386097 ID=MS.gene057144.t1.exon7;Parent=MS.gene057144.t1
chr8.1 CDS 20386097 20386265 20386097 ID=cds.MS.gene057144.t1;Parent=MS.gene057144.t1
chr8.1 exon 20386366 20386540 20386366 ID=MS.gene057144.t1.exon8;Parent=MS.gene057144.t1
chr8.1 CDS 20386366 20386540 20386366 ID=cds.MS.gene057144.t1;Parent=MS.gene057144.t1
Gene Sequence

>MS.gene057144

ATGGCAAATGAAGGTGAAGAAGTTCAGCAGCCACAACTTGTCCTCGCCGACAAGCTTTTCCTCCTCAAACAACAAGATGTTCAAGACATCGACAAAGTTCGATTCAAAGAAGATGTTTTCAATTTCGTCAAGGAACATGGTATCTATCCCTCTTCTCTCTCCGTAAACCCTAATTTTCTTCACTATATAAACCCTAATTTTCTTTTGTTTTTCACAGACATGGTTCCTTTATACGAAACCCTAGTTGCTGATTCCGTTTTGGATATGGATCGTGTCCTTTTGGACTCCATGCGTGCTAAAATTGATGATGAGCTCAAGAAGCTTGATGAAAAGTTAGTTTGTTTCTCTCTCTCTTACTTCGTTTAACCCCAATTGTGAATTTTGGATTTTGAATGCACTAGGTTAAATTGAAGAAAATTTATTTAATAGGGTTTTGATGTTTATTTTTTCAATTAACTATATTGTATGAGATTTGCTTATTTGAATTGTACTAATGTATTTGGTAAGTGTTTTTCTGTTCTTAAATGTTTTACTGGTTTTTGATCTTCAATTATTGTCAATTTTATGATGATTGCTGTTTGTTAACACTCATTATCGCAACATCTTCATCGCTTTATTTACTGAGATTGTAAACTGCGTTGATTAGTTGATTAGTTTATCTTGATGTACAAAACTTACTAAAACAAAGTAAGATGCTGAATTCCTGCTAAAGAAGTATGTTTGGAGTTGTGAATCCACGTGTTCCCTATTCAAGAATCTCTAGAATTAAGTTTTCCCCCTCTAGCAGTTTGATTGAAGTTGAACGGAATATTATCTGTGAAAACAATTTATGCCATTCAGATCATATGTCGATTTTAATATGAAAGTTGACTAGTTGAGTATAATGAGTCTTTGTTGGGGGAAAAAGATGTGTTATTATGTGTATACATTTGTATCATTAAACTATATATAGAGTGCTTTTAAATCAAATTAGTGTTTCTACCAGAGTTTATTTTTACATATTGTGACCTGGTCACCCTTGCTTATTCTGGGGTTTTTCATTAATATTATCATTATAATTGTAGTTGTAGTAGTATTAAGTTCATGCTATATACCCAATGTCACCAATGGCTTATGGGCCACCATAATAGCTAGCCTCAAAACATGCCCAGTGAATGGTAGATGCCATGGAAATCACCATAATCAAGGAAAGAAACAGTTTTGGATAATAAATGTAAATAGTATACATATACCTAAAAATGATGAATAAGTTGTATTTTATATAGTGAGAAGTCACCATACATCCATATAGAACTAAGCTAGTTGGAGGAATATTACTTAATAGACAATTAAAACAACCAAGAAAGAAAAGGATCAATAAATACATATCTTAATGGTTCCAATGATGTAGCATCATGTAAATTGTCATTCTGCAATCATTTACAGTGTTACTTGCAATAAGATTAAGCTCAATGACCGTTGTGCCCTGAAAAATCACCAGCCTTTGAGCTGACAGATGAAAATGAGATAATGTTTACCAAAACTTTCATTTTCACTCTGGCAGAGAAGGCACAGTAGCACCATAGTCAATGTCCACCTCACTTGAGGAGGCTGCAATGATGCTACCAGACTGAAGATGTCCTACAGTGAACCCTCTTCGTTGCTTTGCTATTTGGCTGTGACTGTGAGAGCCACATCTTCAAAAGTGATTCTATCTACTTGTCGCCTGAACTTAGAATTCCTGATGGATGAAATTTAGCCTGTCTCTGCGGTTATTATTAATTACCCATTAATCTTTCTAGGATATATTGCTCTTCTATTTCAAGATAGAAAAAGAAATATTAGTAAGTTTCAGTGAAAAGATTACAACTCAGTAAGCACAAGTACAAAACCTAGAATACTGGGAGAATAGAAAATGCAAAGGCTGGACCAGATGTGTCATAGTAATTGCATTTTTTCAAGTCAAAATTCCTCGAGATACAAACTATTATTTGAAAATTTCAAATTATATTATCCTTGTACTAACGATAGCTCATATGAATGTCTCATTTTAGGATTGCTGATGCCGAGGAAAACTTAGGTGAGAGTGAAGTTCGTGAGGCTCACTTGGCAAAATCCTTATTTTTCATCCGGATTGGGGACAAGGTATGTATATCTATTATAATTTATTGCTCATTTCCTTTTCCTTTCTGCTGCTGGAATCAAGTTAACACTGTCCTCTATGCACCAGGAGAAAGCCTTGGAGCATCTCAAGATAACAGAAACCAAGACTGTTGCAGTTGGGCAGAAGATGGACCTGGTATTCTATACATTGCAGCTTGGTTTCTTTGGCATGGATTTTGATCTCATTTCCAAAAGCATTGACAAAGCTAAAAGGTAATTCTTTGAATCTCAAATATCTCTAGTTATATCCTTTGCTATAATTTTCTGTTAAGAATGGGTTATCTAACTGTTTGCACCATATGACAGCTTGTTTGAAGAAGGTGGTGACTGGGAAAGGAAGAATAGGCTGAAAGTGTATGAAGGCCTCTACTGCATGTCCACTCGAAATTTCGAGAAGGCGGCCACATTGTTCTTGGATTCCATCTCAACCTTTACTACCTATGAACTTTTTCCCTATGACACCTTTATATTTTACACCGTTTTGACCAGCATAATAACATTGGACAGAGTTTCCTTAAAACAAAAGGTACTTCTATTTTTTTTTTTATGTCGCCTTTACACCATTTATCTTTTCTTTTAACCGTTGTTCTGTTATTTCTTGGCAAGTAAATATTAACTAGACTAATTTGCATCAGGTAGTGGATGCTCCTGAGATCTTGACAGTGATTGAAAAAATTCCACATCTTAAAGAGTTTTTGGACTCCTTATATGGTTGTCAATACAAGTCTTTCTTCTCAGCATTTGGTGAGTAGACATTGTTCGAATCACAGTAATTTTCTGTGATATCACAAGAGACACTTTGTGCTAAGTTAATACAAGTGCTGATAAATAATTCATTCCTATCTTTTTGCTTCTATGTTCATATATTTGTTTTATTTTGAAATTCATTTCAGCTGGCCTGACGGAGCAAATTAAGTTGGACCGCTATTTGCATCCACACTTCCGGTATTACATGAGAGAGATCAGAACTGTCATTTATTCCCAGTTTTTGGAATCTTACAAGAGTGTGACAATTGAAGCCATGGCAAAAGCGTTTGGAGTATCTGTGGATTTTATTGATGTGTAAGTGAATGCATCCCAAATCACTTGGTTTTTCGTTTTTAGCATTTTGATTAGATTACAATGTTGTGGGAGGCTGCTCATTACATATATTTGTTTCCAGGGAGCTATCACGTTTTATTGCAGCTGGGAAACTTCACTGTAAGATTGATAAAGTTGCAGGCGTTCTTGAAACTAACCGCCCTGATGCTAAGAATGCTCTTTACCAAGCAACCATTAAGCAAGGAGACTTCTTGTTGAACAGGATCCAGAAACTGTCTCGTGTGATCGATCTTTAG

Protein sequence

>MS.gene057144.t1

MANEGEEVQQPQLVLADKLFLLKQQDVQDIDKVRFKEDVFNFVKEHDMVPLYETLVADSVLDMDRVLLDSMRAKIDDELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKEKALEHLKITETKTVAVGQKMDLVFYTLQLGFFGMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFEKAATLFLDSISTFTTYELFPYDTFIFYTVLTSIITLDRVSLKQKVVDAPEILTVIEKIPHLKEFLDSLYGCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMREIRTVIYSQFLESYKSVTIEAMAKAFGVSVDFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL