Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057144.t1 | XP_003608889.1 | 99.5 | 387 | 2 | 0 | 1 | 387 | 1 | 387 | 1.70E-190 | 675.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057144.t1 | Q93Y35 | 76.0 | 387 | 93 | 0 | 1 | 387 | 1 | 387 | 1.2e-160 | 567.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057144.t1 | G7JMM6 | 99.5 | 387 | 2 | 0 | 1 | 387 | 1 | 387 | 1.3e-190 | 675.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene05190 | MS.gene057144 | 0.807126 | 5.89E-50 | -1.69E-46 |
MS.gene057144 | MS.gene057145 | 0.998084 | 8.88E-256 | -1.69E-46 |
MS.gene057144 | MS.gene24255 | 0.800767 | 1.24E-48 | -1.69E-46 |
MS.gene057144 | MS.gene27247 | 0.803051 | 4.19E-49 | -1.69E-46 |
MS.gene057144 | MS.gene39663 | 0.833005 | 6.84E-56 | -1.69E-46 |
MS.gene057144 | MS.gene39664 | 0.8214 | 4.12E-53 | -1.69E-46 |
MS.gene057144 | MS.gene45419 | 0.810614 | 1.06E-50 | -1.69E-46 |
MS.gene057144 | MS.gene48279 | 0.967731 | 1.10E-127 | -1.69E-46 |
MS.gene057144 | MS.gene48281 | 0.967686 | 1.28E-127 | -1.69E-46 |
MS.gene057144 | MS.gene48400 | 0.99513 | 2.71E-213 | -1.69E-46 |
MS.gene057144 | MS.gene51920 | 0.806618 | 7.54E-50 | -1.69E-46 |
MS.gene057144 | MS.gene52281 | 0.814447 | 1.53E-51 | -1.69E-46 |
MS.gene057144 | MS.gene66119 | 0.802122 | 6.52E-49 | -1.69E-46 |
MS.gene057144 | MS.gene72901 | 0.806477 | 8.07E-50 | -1.69E-46 |
MS.gene057144 | MS.gene72902 | 0.806298 | 8.80E-50 | -1.69E-46 |
MS.gene057144 | MS.gene97690 | 0.801552 | 8.53E-49 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057144.t1 | MTR_4g104080 | 99.483 | 387 | 2 | 0 | 1 | 387 | 1 | 387 | 0.0 | 783 |
MS.gene057144.t1 | MTR_8g046560 | 84.342 | 281 | 25 | 4 | 86 | 366 | 260 | 521 | 2.15e-156 | 451 |
MS.gene057144.t1 | MTR_8g464820 | 95.673 | 208 | 8 | 1 | 96 | 303 | 160 | 366 | 2.77e-141 | 406 |
MS.gene057144.t1 | MTR_7g076160 | 24.291 | 247 | 180 | 3 | 127 | 371 | 173 | 414 | 5.65e-19 | 88.6 |
MS.gene057144.t1 | MTR_8g432630 | 23.481 | 362 | 254 | 11 | 23 | 371 | 65 | 416 | 1.54e-18 | 87.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057144.t1 | AT4G24820 | 82.687 | 387 | 67 | 0 | 1 | 387 | 1 | 387 | 0.0 | 661 |
MS.gene057144.t1 | AT4G24820 | 82.687 | 387 | 67 | 0 | 1 | 387 | 1 | 387 | 0.0 | 661 |
MS.gene057144.t1 | AT3G61140 | 25.100 | 251 | 180 | 4 | 124 | 372 | 169 | 413 | 5.59e-18 | 85.5 |
Find 76 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAGAAGTCTCCTTGCTTAA+TGG | 0.172394 | 8.1:-20386476 | None:intergenic |
TTTAGCTTTGTCAATGCTTT+TGG | 0.209748 | 8.1:-20385392 | None:intergenic |
CGATCACACGAGACAGTTTC+TGG | 0.218957 | 8.1:-20386510 | None:intergenic |
ACATTGCAGCTTGGTTTCTT+TGG | 0.250558 | 8.1:+20385349 | MS.gene057144:CDS |
CCTAGTTGCTGATTCCGTTT+TGG | 0.319218 | 8.1:+20383301 | MS.gene057144:CDS |
GTAAAATATAAAGGTGTCAT+AGG | 0.319394 | 8.1:-20385656 | None:intergenic |
GAAGGCGGCCACATTGTTCT+TGG | 0.328664 | 8.1:+20385597 | MS.gene057144:CDS |
GGATATGGATCGTGTCCTTT+TGG | 0.338072 | 8.1:+20383322 | MS.gene057144:CDS |
GCAACTAGGGTTTCGTATAA+AGG | 0.352561 | 8.1:-20383287 | None:intergenic |
AAAGCATTGACAAAGCTAAA+AGG | 0.352604 | 8.1:+20385395 | MS.gene057144:CDS |
AAGTCTTTCTTCTCAGCATT+TGG | 0.381841 | 8.1:+20385926 | MS.gene057144:CDS |
CTTGAACATCTTGTTGTTTG+AGG | 0.383548 | 8.1:-20383124 | None:intergenic |
CTGCCCAACTGCAACAGTCT+TGG | 0.384938 | 8.1:-20385305 | None:intergenic |
CAAAACGGTGTAAAATATAA+AGG | 0.388515 | 8.1:-20385665 | None:intergenic |
AAGGAGACTTCTTGTTGAAC+AGG | 0.394711 | 8.1:+20386485 | MS.gene057144:CDS |
TGTAAGATTGATAAAGTTGC+AGG | 0.397494 | 8.1:+20386403 | MS.gene057144:CDS |
TAAAGAGCATTCTTAGCATC+AGG | 0.401822 | 8.1:-20386445 | None:intergenic |
GAAGCCATGGCAAAAGCGTT+TGG | 0.405490 | 8.1:+20386219 | MS.gene057144:CDS |
TCAATCACTGTCAAGATCTC+AGG | 0.407014 | 8.1:-20385851 | None:intergenic |
GTCTCGTGTGATCGATCTTT+AGG | 0.409640 | 8.1:+20386519 | MS.gene057144:CDS |
CTTGTATTGACAACCATATA+AGG | 0.412125 | 8.1:-20385906 | None:intergenic |
GCTATTTGCATCCACACTTC+CGG | 0.415118 | 8.1:+20386127 | MS.gene057144:CDS |
CTCCTTGCTTAATGGTTGCT+TGG | 0.422700 | 8.1:-20386468 | None:intergenic |
CAGAGTTTCCTTAAAACAAA+AGG | 0.442207 | 8.1:+20385708 | MS.gene057144:CDS |
CCAACTTAATTTGCTCCGTC+AGG | 0.445020 | 8.1:-20386101 | None:intergenic |
CCAAAACGGAATCAGCAACT+AGG | 0.455755 | 8.1:-20383301 | None:intergenic |
GCAGCTTGGTTTCTTTGGCA+TGG | 0.461721 | 8.1:+20385354 | MS.gene057144:CDS |
TGTTTGAAGAAGGTGGTGAC+TGG | 0.465631 | 8.1:+20385512 | MS.gene057144:CDS |
TGTTATTATGCTGGTCAAAA+CGG | 0.481534 | 8.1:-20385680 | None:intergenic |
AAGAAGGTGGTGACTGGGAA+AGG | 0.487909 | 8.1:+20385518 | MS.gene057144:CDS |
TACATACCTTGTCCCCAATC+CGG | 0.495723 | 8.1:-20385170 | None:intergenic |
TGAAGTTCGTGAGGCTCACT+TGG | 0.496675 | 8.1:+20385128 | MS.gene057144:CDS |
TTTGAGGAGGAAAAGCTTGT+CGG | 0.496982 | 8.1:-20383108 | None:intergenic |
TTTCATCCGGATTGGGGACA+AGG | 0.498726 | 8.1:+20385164 | MS.gene057144:CDS |
TATGACAGCTTGTTTGAAGA+AGG | 0.509351 | 8.1:+20385502 | MS.gene057144:intron |
GTATTCTATACATTGCAGCT+TGG | 0.510078 | 8.1:+20385340 | MS.gene057144:CDS |
TGTTGCAGTTGGGCAGAAGA+TGG | 0.511519 | 8.1:+20385312 | MS.gene057144:CDS |
TTTGACCAGCATAATAACAT+TGG | 0.511922 | 8.1:+20385684 | MS.gene057144:CDS |
TTCAATTTCGTCAAGGAACA+TGG | 0.512182 | 8.1:+20383179 | MS.gene057144:CDS |
TGATCTCTCTCATGTAATAC+CGG | 0.514625 | 8.1:-20386146 | None:intergenic |
TCTGTCCAATGTTATTATGC+TGG | 0.519046 | 8.1:-20385689 | None:intergenic |
GTGACTGGGAAAGGAAGAAT+AGG | 0.520244 | 8.1:+20385527 | MS.gene057144:CDS |
TGTTATCTTGAGATGCTCCA+AGG | 0.535770 | 8.1:-20385278 | None:intergenic |
AAACCAAGACTGTTGCAGTT+GGG | 0.539841 | 8.1:+20385302 | MS.gene057144:CDS |
GCTGATGCCGAGGAAAACTT+AGG | 0.544982 | 8.1:+20385099 | MS.gene057144:CDS |
TAAAATATAAAGGTGTCATA+GGG | 0.545376 | 8.1:-20385655 | None:intergenic |
GACACGATCCATATCCAAAA+CGG | 0.546950 | 8.1:-20383315 | None:intergenic |
GAAACCAAGACTGTTGCAGT+TGG | 0.547733 | 8.1:+20385301 | MS.gene057144:CDS |
CCTGACGGAGCAAATTAAGT+TGG | 0.551415 | 8.1:+20386101 | MS.gene057144:CDS |
TAGCACGCATGGAGTCCAAA+AGG | 0.551715 | 8.1:-20383337 | None:intergenic |
ATAGGTAGTAAAGGTTGAGA+TGG | 0.554018 | 8.1:-20385623 | None:intergenic |
TATGCACCAGGAGAAAGCCT+TGG | 0.557453 | 8.1:+20385261 | MS.gene057144:intron |
CAAAACGGAATCAGCAACTA+GGG | 0.569243 | 8.1:-20383300 | None:intergenic |
GAGTGTGACAATTGAAGCCA+TGG | 0.570854 | 8.1:+20386206 | MS.gene057144:CDS |
ATCGCGTCAATGGCAAATGA+AGG | 0.573429 | 8.1:+20383053 | None:intergenic |
CTCATGTAATACCGGAAGTG+TGG | 0.574056 | 8.1:-20386138 | None:intergenic |
ATTCATTTCAGCTGGCCTGA+CGG | 0.578789 | 8.1:+20386086 | MS.gene057144:intron |
AATAGGCTGAAAGTGTATGA+AGG | 0.580095 | 8.1:+20385544 | MS.gene057144:CDS |
GAACATCTTGTTGTTTGAGG+AGG | 0.589500 | 8.1:-20383121 | None:intergenic |
TACCAAGCAACCATTAAGCA+AGG | 0.592283 | 8.1:+20386466 | MS.gene057144:CDS |
GTTTGAAGAAGGTGGTGACT+GGG | 0.592873 | 8.1:+20385513 | MS.gene057144:CDS |
TTCGAGTGGACATGCAGTAG+AGG | 0.594533 | 8.1:-20385567 | None:intergenic |
GCTGCAATGTATAGAATACC+AGG | 0.602890 | 8.1:-20385336 | None:intergenic |
GGAGGAAAAGCTTGTCGGCG+AGG | 0.605693 | 8.1:-20383103 | None:intergenic |
CACTCGAAATTTCGAGAAGG+CGG | 0.611108 | 8.1:+20385582 | MS.gene057144:CDS |
CGCCTTCTCGAAATTTCGAG+TGG | 0.620270 | 8.1:-20385581 | None:intergenic |
TTGTCGGCGAGGACAAGTTG+TGG | 0.627071 | 8.1:-20383092 | None:intergenic |
AAAGAGCATTCTTAGCATCA+GGG | 0.643450 | 8.1:-20386444 | None:intergenic |
AAAAGCGTTTGGAGTATCTG+TGG | 0.655763 | 8.1:+20386230 | MS.gene057144:CDS |
GGAAGTGTGGATGCAAATAG+CGG | 0.661860 | 8.1:-20386125 | None:intergenic |
AGGTGAGAGTGAAGTTCGTG+AGG | 0.662611 | 8.1:+20385119 | MS.gene057144:CDS |
GTCCACTCGAAATTTCGAGA+AGG | 0.663292 | 8.1:+20385579 | MS.gene057144:CDS |
AGTTGGGCAGAAGATGGACC+TGG | 0.674047 | 8.1:+20385318 | MS.gene057144:CDS |
GACAGCTTGTTTGAAGAAGG+TGG | 0.675197 | 8.1:+20385505 | MS.gene057144:intron |
GAGCATTCTTAGCATCAGGG+CGG | 0.753729 | 8.1:-20386441 | None:intergenic |
GATGGAATCCAAGAACAATG+TGG | 0.760047 | 8.1:-20385605 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGAAGAAAATTTATTTAATA+GGG | + | chr8.1:20383470-20383489 | MS.gene057144:intron | 10.0% |
!! | TTGAAGAAAATTTATTTAAT+AGG | + | chr8.1:20383469-20383488 | MS.gene057144:intron | 10.0% |
!! | TCAATAAATACATATCTTAA+TGG | + | chr8.1:20384415-20384434 | MS.gene057144:intron | 15.0% |
!! | TGAAAAACAAAAGAAAATTA+GGG | - | chr8.1:20383256-20383275 | None:intergenic | 15.0% |
!! | TTATATAGTGAAGAAAATTA+GGG | - | chr8.1:20383232-20383251 | None:intergenic | 15.0% |
!! | TTTATATAGTGAAGAAAATT+AGG | - | chr8.1:20383233-20383252 | None:intergenic | 15.0% |
!!! | TATAATTTTCTGTTAAGAAT+GGG | + | chr8.1:20385459-20385478 | MS.gene057144:intron | 15.0% |
!! | AAAATCCAAAATTCACAATT+GGG | - | chr8.1:20383432-20383451 | None:intergenic | 20.0% |
!! | ATATATCCTAGAAAGATTAA+TGG | - | chr8.1:20384830-20384849 | None:intergenic | 20.0% |
!! | ATTACATATATTTGTTTCCA+GGG | + | chr8.1:20386345-20386364 | MS.gene057144:intron | 20.0% |
!! | CAATATGTAAAAATAAACTC+TGG | - | chr8.1:20384046-20384065 | None:intergenic | 20.0% |
!! | GTGAAAAACAAAAGAAAATT+AGG | - | chr8.1:20383257-20383276 | None:intergenic | 20.0% |
!! | TATATCCTAGAAAGATTAAT+GGG | - | chr8.1:20384829-20384848 | None:intergenic | 20.0% |
!! | TTAACAGAAAATTATAGCAA+AGG | - | chr8.1:20385455-20385474 | None:intergenic | 20.0% |
!! | TTGAATTGTACTAATGTATT+TGG | + | chr8.1:20383542-20383561 | MS.gene057144:intron | 20.0% |
!!! | ACAACTTATTCATCATTTTT+AGG | - | chr8.1:20384296-20384315 | None:intergenic | 20.0% |
!!! | CTATAATTTTCTGTTAAGAA+TGG | + | chr8.1:20385458-20385477 | MS.gene057144:intron | 20.0% |
!!! | TAAAATATAAAGGTGTCATA+GGG | - | chr8.1:20385658-20385677 | None:intergenic | 20.0% |
! | AAAAAGTTCATAGGTAGTAA+AGG | - | chr8.1:20385635-20385654 | None:intergenic | 25.0% |
! | AAATCCAAAATTCACAATTG+GGG | - | chr8.1:20383431-20383450 | None:intergenic | 25.0% |
! | AATTACCCATTAATCTTTCT+AGG | + | chr8.1:20384821-20384840 | MS.gene057144:intron | 25.0% |
! | AGAAAAGATAAATGGTGTAA+AGG | - | chr8.1:20385759-20385778 | None:intergenic | 25.0% |
! | CAAAACGGTGTAAAATATAA+AGG | - | chr8.1:20385668-20385687 | None:intergenic | 25.0% |
! | CAAAATCCAAAATTCACAAT+TGG | - | chr8.1:20383433-20383452 | None:intergenic | 25.0% |
! | CATTACATATATTTGTTTCC+AGG | + | chr8.1:20386344-20386363 | MS.gene057144:intron | 25.0% |
! | CGGTTAAAAGAAAAGATAAA+TGG | - | chr8.1:20385767-20385786 | None:intergenic | 25.0% |
! | TAAAACAACCAAGAAAGAAA+AGG | + | chr8.1:20384391-20384410 | MS.gene057144:intron | 25.0% |
! | TGATTAGATTACAATGTTGT+GGG | + | chr8.1:20386313-20386332 | MS.gene057144:intron | 25.0% |
! | TTGATTAGATTACAATGTTG+TGG | + | chr8.1:20386312-20386331 | MS.gene057144:intron | 25.0% |
!! | AAATAATAGTTTGTATCTCG+AGG | - | chr8.1:20385014-20385033 | None:intergenic | 25.0% |
!! | AATTCTAGAGATTCTTGAAT+AGG | - | chr8.1:20383809-20383828 | None:intergenic | 25.0% |
!! | ATTCTAGAGATTCTTGAATA+GGG | - | chr8.1:20383808-20383827 | None:intergenic | 25.0% |
!! | TCATATGAATGTCTCATTTT+AGG | + | chr8.1:20385073-20385092 | MS.gene057144:intron | 25.0% |
!! | TCTGTTCTTAAATGTTTTAC+TGG | + | chr8.1:20383575-20383594 | MS.gene057144:intron | 25.0% |
!! | TTATTGATCCTTTTCTTTCT+TGG | - | chr8.1:20384402-20384421 | None:intergenic | 25.0% |
!!! | ATTTTGAAATTCATTTCAGC+TGG | + | chr8.1:20386078-20386097 | MS.gene057144:intron | 25.0% |
!!! | CAAAATCCTTATTTTTCATC+CGG | + | chr8.1:20385151-20385170 | MS.gene057144:CDS | 25.0% |
!!! | GTAAAATATAAAGGTGTCAT+AGG | - | chr8.1:20385659-20385678 | None:intergenic | 25.0% |
!!! | TAGAAGTACCTTTTGTTTTA+AGG | - | chr8.1:20385719-20385738 | None:intergenic | 25.0% |
!!! | TATTTTTACATATTGTGACC+TGG | + | chr8.1:20384051-20384070 | MS.gene057144:intron | 25.0% |
AAACGAAAAACCAAGTGATT+TGG | - | chr8.1:20386284-20386303 | None:intergenic | 30.0% | |
AAATCGACATATGATCTGAA+TGG | - | chr8.1:20383897-20383916 | None:intergenic | 30.0% | |
AACGAAAAACCAAGTGATTT+GGG | - | chr8.1:20386283-20386302 | None:intergenic | 30.0% | |
AAGTACAAAACCTAGAATAC+TGG | + | chr8.1:20384922-20384941 | MS.gene057144:intron | 30.0% | |
AGTACAAAACCTAGAATACT+GGG | + | chr8.1:20384923-20384942 | MS.gene057144:intron | 30.0% | |
AGTATAATGAGTCTTTGTTG+GGG | + | chr8.1:20383939-20383958 | MS.gene057144:intron | 30.0% | |
CAGAGTTTCCTTAAAACAAA+AGG | + | chr8.1:20385708-20385727 | MS.gene057144:CDS | 30.0% | |
CTTGTAAGATTCCAAAAACT+GGG | - | chr8.1:20386187-20386206 | None:intergenic | 30.0% | |
GAACATAGAAGCAAAAAGAT+AGG | - | chr8.1:20386045-20386064 | None:intergenic | 30.0% | |
GAGTATAATGAGTCTTTGTT+GGG | + | chr8.1:20383938-20383957 | MS.gene057144:intron | 30.0% | |
GTGAAGAAAATTAGGGTTTA+CGG | - | chr8.1:20383225-20383244 | None:intergenic | 30.0% | |
TCTTGTAAGATTCCAAAAAC+TGG | - | chr8.1:20386188-20386207 | None:intergenic | 30.0% | |
TGAGTATAATGAGTCTTTGT+TGG | + | chr8.1:20383937-20383956 | MS.gene057144:intron | 30.0% | |
TGTAAGATTGATAAAGTTGC+AGG | + | chr8.1:20386403-20386422 | MS.gene057144:CDS | 30.0% | |
TGTTATTATGCTGGTCAAAA+CGG | - | chr8.1:20385683-20385702 | None:intergenic | 30.0% | |
TTTACATGATGCTACATCAT+TGG | - | chr8.1:20384443-20384462 | None:intergenic | 30.0% | |
TTTGACCAGCATAATAACAT+TGG | + | chr8.1:20385684-20385703 | MS.gene057144:CDS | 30.0% | |
! | ACTGTTTCTTTCCTTGATTA+TGG | - | chr8.1:20384241-20384260 | None:intergenic | 30.0% |
! | AGATGTTTTCAATTTCGTCA+AGG | + | chr8.1:20383172-20383191 | MS.gene057144:CDS | 30.0% |
! | ATCAAGGAAAGAAACAGTTT+TGG | + | chr8.1:20384243-20384262 | MS.gene057144:intron | 30.0% |
! | CAAAACTTTCATTTTCACTC+TGG | + | chr8.1:20384579-20384598 | MS.gene057144:intron | 30.0% |
! | CAGAGTGAAAATGAAAGTTT+TGG | - | chr8.1:20384581-20384600 | None:intergenic | 30.0% |
! | CTTGTATTGACAACCATATA+AGG | - | chr8.1:20385909-20385928 | None:intergenic | 30.0% |
! | TAACTAGACTAATTTGCATC+AGG | + | chr8.1:20385817-20385836 | MS.gene057144:intron | 30.0% |
! | TCCACATCTTAAAGAGTTTT+TGG | + | chr8.1:20385880-20385899 | MS.gene057144:CDS | 30.0% |
! | TTAACCCCAATTGTGAATTT+TGG | + | chr8.1:20383424-20383443 | MS.gene057144:intron | 30.0% |
! | TTTTGGATTTTGAATGCACT+AGG | + | chr8.1:20383441-20383460 | MS.gene057144:intron | 30.0% |
!! | AAAGCATTGACAAAGCTAAA+AGG | + | chr8.1:20385395-20385414 | MS.gene057144:CDS | 30.0% |
!! | CTTAGTTCTATATGGATGTA+TGG | - | chr8.1:20384340-20384359 | None:intergenic | 30.0% |
!! | TAGAATCACTTTTGAAGATG+TGG | - | chr8.1:20384735-20384754 | None:intergenic | 30.0% |
!! | TCCAAAAACTCTTTAAGATG+TGG | - | chr8.1:20385884-20385903 | None:intergenic | 30.0% |
!! | TGTCATTTATTCCCAGTTTT+TGG | + | chr8.1:20386173-20386192 | MS.gene057144:CDS | 30.0% |
!!! | TCTTTTGTTTTTCACAGACA+TGG | + | chr8.1:20383262-20383281 | MS.gene057144:intron | 30.0% |
!!! | TTTAGCTTTGTCAATGCTTT+TGG | - | chr8.1:20385395-20385414 | None:intergenic | 30.0% |
AAAAACCCCAGAATAAGCAA+GGG | - | chr8.1:20384080-20384099 | None:intergenic | 35.0% | |
AAATAGCAAAGCAACGAAGA+GGG | - | chr8.1:20384695-20384714 | None:intergenic | 35.0% | |
AACTTCAATCAAACTGCTAG+AGG | - | chr8.1:20383842-20383861 | None:intergenic | 35.0% | |
AAGTCTTTCTTCTCAGCATT+TGG | + | chr8.1:20385926-20385945 | MS.gene057144:CDS | 35.0% | |
ACTTCAATCAAACTGCTAGA+GGG | - | chr8.1:20383841-20383860 | None:intergenic | 35.0% | |
AGAATAGAAAATGCAAAGGC+TGG | + | chr8.1:20384946-20384965 | MS.gene057144:intron | 35.0% | |
ATAGGTAGTAAAGGTTGAGA+TGG | - | chr8.1:20385626-20385645 | None:intergenic | 35.0% | |
CATGGAAATCACCATAATCA+AGG | + | chr8.1:20384227-20384246 | MS.gene057144:intron | 35.0% | |
CCATATAGAACTAAGCTAGT+TGG | + | chr8.1:20384345-20384364 | MS.gene057144:intron | 35.0% | |
CTTGATTATGGTGATTTCCA+TGG | - | chr8.1:20384229-20384248 | None:intergenic | 35.0% | |
GCAGTTTGATTGAAGTTGAA+CGG | + | chr8.1:20383845-20383864 | MS.gene057144:intron | 35.0% | |
GCCAAGAAATAACAGAACAA+CGG | - | chr8.1:20385787-20385806 | None:intergenic | 35.0% | |
GTATAATGAGTCTTTGTTGG+GGG | + | chr8.1:20383940-20383959 | MS.gene057144:intron | 35.0% | |
GTATTCTATACATTGCAGCT+TGG | + | chr8.1:20385340-20385359 | MS.gene057144:CDS | 35.0% | |
GTCATAGGGAAAAAGTTCAT+AGG | - | chr8.1:20385644-20385663 | None:intergenic | 35.0% | |
TATAGAACTAAGCTAGTTGG+AGG | + | chr8.1:20384348-20384367 | MS.gene057144:intron | 35.0% | |
TATATACCCAATGTCACCAA+TGG | + | chr8.1:20384149-20384168 | MS.gene057144:intron | 35.0% | |
TATGAGCTATCGTTAGTACA+AGG | - | chr8.1:20385058-20385077 | None:intergenic | 35.0% | |
TCCAAACATACTTCTTTAGC+AGG | - | chr8.1:20383767-20383786 | None:intergenic | 35.0% | |
TCTGTCCAATGTTATTATGC+TGG | - | chr8.1:20385692-20385711 | None:intergenic | 35.0% | |
TCTTCAAACAAGCTGTCATA+TGG | - | chr8.1:20385502-20385521 | None:intergenic | 35.0% | |
TGATCTCTCTCATGTAATAC+CGG | - | chr8.1:20386149-20386168 | None:intergenic | 35.0% | |
TGCAATTACTATGACACATC+TGG | - | chr8.1:20384973-20384992 | None:intergenic | 35.0% | |
TGGGAGAATAGAAAATGCAA+AGG | + | chr8.1:20384942-20384961 | MS.gene057144:intron | 35.0% | |
TTAATAATAACCGCAGAGAC+AGG | - | chr8.1:20384803-20384822 | None:intergenic | 35.0% | |
TTAGATTACAATGTTGTGGG+AGG | + | chr8.1:20386316-20386335 | MS.gene057144:intron | 35.0% | |
TTCAATTTCGTCAAGGAACA+TGG | + | chr8.1:20383179-20383198 | MS.gene057144:CDS | 35.0% | |
TTCTATTCTCCCAGTATTCT+AGG | - | chr8.1:20384935-20384954 | None:intergenic | 35.0% | |
! | AATAGGCTGAAAGTGTATGA+AGG | + | chr8.1:20385544-20385563 | MS.gene057144:CDS | 35.0% |
! | ATTTTCATCTGTCAGCTCAA+AGG | - | chr8.1:20384545-20384564 | None:intergenic | 35.0% |
! | TATGACAGCTTGTTTGAAGA+AGG | + | chr8.1:20385502-20385521 | MS.gene057144:intron | 35.0% |
! | TCCTGCTAAAGAAGTATGTT+TGG | + | chr8.1:20383763-20383782 | MS.gene057144:intron | 35.0% |
!! | AAAGAGCATTCTTAGCATCA+GGG | - | chr8.1:20386447-20386466 | None:intergenic | 35.0% |
!! | ACCGTTGTTCTGTTATTTCT+TGG | + | chr8.1:20385783-20385802 | MS.gene057144:intron | 35.0% |
!! | ATCATCAATTTTAGCACGCA+TGG | - | chr8.1:20383351-20383370 | None:intergenic | 35.0% |
!! | CCAACTAGCTTAGTTCTATA+TGG | - | chr8.1:20384348-20384367 | None:intergenic | 35.0% |
!! | CTTATTTTTCATCCGGATTG+GGG | + | chr8.1:20385158-20385177 | MS.gene057144:CDS | 35.0% |
!! | CTTGAACATCTTGTTGTTTG+AGG | - | chr8.1:20383127-20383146 | None:intergenic | 35.0% |
!! | GAGTTTTTGGACTCCTTATA+TGG | + | chr8.1:20385893-20385912 | MS.gene057144:CDS | 35.0% |
!! | TAAAGAGCATTCTTAGCATC+AGG | - | chr8.1:20386448-20386467 | None:intergenic | 35.0% |
!! | TATCACGTTTTATTGCAGCT+GGG | + | chr8.1:20386371-20386390 | MS.gene057144:CDS | 35.0% |
!!! | CCTTATTTTTCATCCGGATT+GGG | + | chr8.1:20385157-20385176 | MS.gene057144:CDS | 35.0% |
!!! | TCCTTATTTTTCATCCGGAT+TGG | + | chr8.1:20385156-20385175 | MS.gene057144:CDS | 35.0% |
!!! | TGTTTTGAGGCTAGCTATTA+TGG | - | chr8.1:20384186-20384205 | None:intergenic | 35.0% |
AAACCAAGACTGTTGCAGTT+GGG | + | chr8.1:20385302-20385321 | MS.gene057144:CDS | 40.0% | |
AAGGAGACTTCTTGTTGAAC+AGG | + | chr8.1:20386485-20386504 | MS.gene057144:CDS | 40.0% | |
AATAAAACGTGATAGCTCCC+TGG | - | chr8.1:20386365-20386384 | None:intergenic | 40.0% | |
ACATTGCAGCTTGGTTTCTT+TGG | + | chr8.1:20385349-20385368 | MS.gene057144:CDS | 40.0% | |
ATTCTTGAATAGGGAACACG+TGG | - | chr8.1:20383799-20383818 | None:intergenic | 40.0% | |
CAAAACGGAATCAGCAACTA+GGG | - | chr8.1:20383303-20383322 | None:intergenic | 40.0% | |
CAAATAGCAAAGCAACGAAG+AGG | - | chr8.1:20384696-20384715 | None:intergenic | 40.0% | |
CAAGAAGTCTCCTTGCTTAA+TGG | - | chr8.1:20386479-20386498 | None:intergenic | 40.0% | |
CAATGTCACCAATGGCTTAT+GGG | + | chr8.1:20384157-20384176 | MS.gene057144:intron | 40.0% | |
CAGGCTAAATTTCATCCATC+AGG | - | chr8.1:20384784-20384803 | None:intergenic | 40.0% | |
CCATCAGGAATTCTAAGTTC+AGG | - | chr8.1:20384769-20384788 | None:intergenic | 40.0% | |
CCCAATCCGGATGAAAAATA+AGG | - | chr8.1:20385160-20385179 | None:intergenic | 40.0% | |
CCTGAACTTAGAATTCCTGA+TGG | + | chr8.1:20384766-20384785 | MS.gene057144:intron | 40.0% | |
CTTCAATCAAACTGCTAGAG+GGG | - | chr8.1:20383840-20383859 | None:intergenic | 40.0% | |
GAAAAACCCCAGAATAAGCA+AGG | - | chr8.1:20384081-20384100 | None:intergenic | 40.0% | |
GACACGATCCATATCCAAAA+CGG | - | chr8.1:20383318-20383337 | None:intergenic | 40.0% | |
GATGGAATCCAAGAACAATG+TGG | - | chr8.1:20385608-20385627 | None:intergenic | 40.0% | |
GCAACTAGGGTTTCGTATAA+AGG | - | chr8.1:20383290-20383309 | None:intergenic | 40.0% | |
GCTGCAATGTATAGAATACC+AGG | - | chr8.1:20385339-20385358 | None:intergenic | 40.0% | |
TACCAAGCAACCATTAAGCA+AGG | + | chr8.1:20386466-20386485 | MS.gene057144:CDS | 40.0% | |
TCAATCACTGTCAAGATCTC+AGG | - | chr8.1:20385854-20385873 | None:intergenic | 40.0% | |
TGAAATTTAGCCTGTCTCTG+CGG | + | chr8.1:20384790-20384809 | MS.gene057144:intron | 40.0% | |
TGAATGCATCCCAAATCACT+TGG | + | chr8.1:20386271-20386290 | MS.gene057144:intron | 40.0% | |
TGTTATCTTGAGATGCTCCA+AGG | - | chr8.1:20385281-20385300 | None:intergenic | 40.0% | |
TTCAATCAAACTGCTAGAGG+GGG | - | chr8.1:20383839-20383858 | None:intergenic | 40.0% | |
TTTGAGGAGGAAAAGCTTGT+CGG | - | chr8.1:20383111-20383130 | None:intergenic | 40.0% | |
! | ACTCTCACCTAAGTTTTCCT+CGG | - | chr8.1:20385109-20385128 | None:intergenic | 40.0% |
! | CAAAGGCTGGTGATTTTTCA+GGG | - | chr8.1:20384528-20384547 | None:intergenic | 40.0% |
! | CATAAGCCATTGGTGACATT+GGG | - | chr8.1:20384158-20384177 | None:intergenic | 40.0% |
! | GACTAATTTGCATCAGGTAG+TGG | + | chr8.1:20385823-20385842 | MS.gene057144:intron | 40.0% |
! | TCAAAGGCTGGTGATTTTTC+AGG | - | chr8.1:20384529-20384548 | None:intergenic | 40.0% |
! | TTTGAGGCTAGCTATTATGG+TGG | - | chr8.1:20384183-20384202 | None:intergenic | 40.0% |
!! | AAAAGCGTTTGGAGTATCTG+TGG | + | chr8.1:20386230-20386249 | MS.gene057144:CDS | 40.0% |
!! | CTATCACGTTTTATTGCAGC+TGG | + | chr8.1:20386370-20386389 | MS.gene057144:CDS | 40.0% |
!! | CTCTTCGTTGCTTTGCTATT+TGG | + | chr8.1:20384694-20384713 | MS.gene057144:intron | 40.0% |
!! | GAACATCTTGTTGTTTGAGG+AGG | - | chr8.1:20383124-20383143 | None:intergenic | 40.0% |
!!! | TGCTGATTCCGTTTTGGATA+TGG | + | chr8.1:20383307-20383326 | MS.gene057144:CDS | 40.0% |
ACTGTAGGACATCTTCAGTC+TGG | - | chr8.1:20384669-20384688 | None:intergenic | 45.0% | |
ACTTGATTCCAGCAGCAGAA+AGG | - | chr8.1:20385228-20385247 | None:intergenic | 45.0% | |
CACTCGAAATTTCGAGAAGG+CGG | + | chr8.1:20385582-20385601 | MS.gene057144:CDS | 45.0% | |
CATGGCATCTACCATTCACT+GGG | - | chr8.1:20384211-20384230 | None:intergenic | 45.0% | |
CCAAAACGGAATCAGCAACT+AGG | - | chr8.1:20383304-20383323 | None:intergenic | 45.0% | |
CCAATGTCACCAATGGCTTA+TGG | + | chr8.1:20384156-20384175 | MS.gene057144:intron | 45.0% | |
CCTGACGGAGCAAATTAAGT+TGG | + | chr8.1:20386101-20386120 | MS.gene057144:CDS | 45.0% | |
CTCAAAACATGCCCAGTGAA+TGG | + | chr8.1:20384197-20384216 | MS.gene057144:intron | 45.0% | |
CTCATGTAATACCGGAAGTG+TGG | - | chr8.1:20386141-20386160 | None:intergenic | 45.0% | |
CTCCTTGCTTAATGGTTGCT+TGG | - | chr8.1:20386471-20386490 | None:intergenic | 45.0% | |
GAAACCAAGACTGTTGCAGT+TGG | + | chr8.1:20385301-20385320 | MS.gene057144:CDS | 45.0% | |
GAGTGTGACAATTGAAGCCA+TGG | + | chr8.1:20386206-20386225 | MS.gene057144:CDS | 45.0% | |
GCTATTTGCATCCACACTTC+CGG | + | chr8.1:20386127-20386146 | MS.gene057144:CDS | 45.0% | |
GTCCACTCGAAATTTCGAGA+AGG | + | chr8.1:20385579-20385598 | MS.gene057144:CDS | 45.0% | |
GTGACTGGGAAAGGAAGAAT+AGG | + | chr8.1:20385527-20385546 | MS.gene057144:CDS | 45.0% | |
GTTTGAAGAAGGTGGTGACT+GGG | + | chr8.1:20385513-20385532 | MS.gene057144:CDS | 45.0% | |
TACATACCTTGTCCCCAATC+CGG | - | chr8.1:20385173-20385192 | None:intergenic | 45.0% | |
TGGTCACCCTTGCTTATTCT+GGG | + | chr8.1:20384071-20384090 | MS.gene057144:intron | 45.0% | |
TGTTTGAAGAAGGTGGTGAC+TGG | + | chr8.1:20385512-20385531 | MS.gene057144:CDS | 45.0% | |
TTCCAGCAGCAGAAAGGAAA+AGG | - | chr8.1:20385222-20385241 | None:intergenic | 45.0% | |
! | AGTGAGGTGGACATTGACTA+TGG | - | chr8.1:20384624-20384643 | None:intergenic | 45.0% |
! | ATTCATTTCAGCTGGCCTGA+CGG | + | chr8.1:20386086-20386105 | MS.gene057144:intron | 45.0% |
! | CATTCACTGGGCATGTTTTG+AGG | - | chr8.1:20384199-20384218 | None:intergenic | 45.0% |
! | CATTTTCACTCTGGCAGAGA+AGG | + | chr8.1:20384588-20384607 | MS.gene057144:intron | 45.0% |
! | CCATAAGCCATTGGTGACAT+TGG | - | chr8.1:20384159-20384178 | None:intergenic | 45.0% |
! | GACAGCTTGTTTGAAGAAGG+TGG | + | chr8.1:20385505-20385524 | MS.gene057144:intron | 45.0% |
! | GGAAGTGTGGATGCAAATAG+CGG | - | chr8.1:20386128-20386147 | None:intergenic | 45.0% |
! | GGATATGGATCGTGTCCTTT+TGG | + | chr8.1:20383322-20383341 | MS.gene057144:CDS | 45.0% |
! | TACTCCAAACGCTTTTGCCA+TGG | - | chr8.1:20386226-20386245 | None:intergenic | 45.0% |
! | TTCCTTTTCCTTTCTGCTGC+TGG | + | chr8.1:20385217-20385236 | MS.gene057144:intron | 45.0% |
!! | CCAACTTAATTTGCTCCGTC+AGG | - | chr8.1:20386104-20386123 | None:intergenic | 45.0% |
!!! | CCTAGTTGCTGATTCCGTTT+TGG | + | chr8.1:20383301-20383320 | MS.gene057144:CDS | 45.0% |
!!! | GGTGATTTTTCAGGGCACAA+CGG | - | chr8.1:20384520-20384539 | None:intergenic | 45.0% |
!!! | TTTTAGGATTGCTGATGCCG+AGG | + | chr8.1:20385089-20385108 | MS.gene057144:intron | 45.0% |
AACACTGTCCTCTATGCACC+AGG | + | chr8.1:20385249-20385268 | MS.gene057144:intron | 50.0% | |
AAGAAGGTGGTGACTGGGAA+AGG | + | chr8.1:20385518-20385537 | MS.gene057144:CDS | 50.0% | |
AATGTCCACCTCACTTGAGG+AGG | + | chr8.1:20384629-20384648 | MS.gene057144:intron | 50.0% | |
AGGGTTTACGGAGAGAGAAG+AGG | - | chr8.1:20383213-20383232 | None:intergenic | 50.0% | |
AGGTGAGAGTGAAGTTCGTG+AGG | + | chr8.1:20385119-20385138 | MS.gene057144:CDS | 50.0% | |
CAACGAAGAGGGTTCACTGT+AGG | - | chr8.1:20384684-20384703 | None:intergenic | 50.0% | |
CAGAATAAGCAAGGGTGACC+AGG | - | chr8.1:20384072-20384091 | None:intergenic | 50.0% | |
CCAGTGAATGGTAGATGCCA+TGG | + | chr8.1:20384209-20384228 | MS.gene057144:intron | 50.0% | |
CCATGGCATCTACCATTCAC+TGG | - | chr8.1:20384212-20384231 | None:intergenic | 50.0% | |
CGATCACACGAGACAGTTTC+TGG | - | chr8.1:20386513-20386532 | None:intergenic | 50.0% | |
CGCCTTCTCGAAATTTCGAG+TGG | - | chr8.1:20385584-20385603 | None:intergenic | 50.0% | |
CTGGTCACCCTTGCTTATTC+TGG | + | chr8.1:20384070-20384089 | MS.gene057144:intron | 50.0% | |
GAGCATTCTTAGCATCAGGG+CGG | - | chr8.1:20386444-20386463 | None:intergenic | 50.0% | |
GCAGCTTGGTTTCTTTGGCA+TGG | + | chr8.1:20385354-20385373 | MS.gene057144:CDS | 50.0% | |
GCTGATGCCGAGGAAAACTT+AGG | + | chr8.1:20385099-20385118 | MS.gene057144:CDS | 50.0% | |
GGGTTTACGGAGAGAGAAGA+GGG | - | chr8.1:20383212-20383231 | None:intergenic | 50.0% | |
GGTCACCCTTGCTTATTCTG+GGG | + | chr8.1:20384072-20384091 | MS.gene057144:intron | 50.0% | |
GTCAATGTCCACCTCACTTG+AGG | + | chr8.1:20384626-20384645 | MS.gene057144:intron | 50.0% | |
TAGCACGCATGGAGTCCAAA+AGG | - | chr8.1:20383340-20383359 | None:intergenic | 50.0% | |
TATGCACCAGGAGAAAGCCT+TGG | + | chr8.1:20385261-20385280 | MS.gene057144:intron | 50.0% | |
TATGGTGGCCCATAAGCCAT+TGG | - | chr8.1:20384168-20384187 | None:intergenic | 50.0% | |
TCATCTGTCAGCTCAAAGGC+TGG | - | chr8.1:20384541-20384560 | None:intergenic | 50.0% | |
TGAAGTTCGTGAGGCTCACT+TGG | + | chr8.1:20385128-20385147 | MS.gene057144:CDS | 50.0% | |
TGTTGCAGTTGGGCAGAAGA+TGG | + | chr8.1:20385312-20385331 | MS.gene057144:CDS | 50.0% | |
TTCGAGTGGACATGCAGTAG+AGG | - | chr8.1:20385570-20385589 | None:intergenic | 50.0% | |
! | TTTCATCCGGATTGGGGACA+AGG | + | chr8.1:20385164-20385183 | MS.gene057144:CDS | 50.0% |
!! | GAAGCCATGGCAAAAGCGTT+TGG | + | chr8.1:20386219-20386238 | MS.gene057144:CDS | 50.0% |
AGTTGGGCAGAAGATGGACC+TGG | + | chr8.1:20385318-20385337 | MS.gene057144:CDS | 55.0% | |
CATTGCAGCCTCCTCAAGTG+AGG | - | chr8.1:20384640-20384659 | None:intergenic | 55.0% | |
CTGCCCAACTGCAACAGTCT+TGG | - | chr8.1:20385308-20385327 | None:intergenic | 55.0% | |
GAAGGCGGCCACATTGTTCT+TGG | + | chr8.1:20385597-20385616 | MS.gene057144:CDS | 55.0% | |
GATGCTCCAAGGCTTTCTCC+TGG | - | chr8.1:20385270-20385289 | None:intergenic | 55.0% | |
GGCTTTCTCCTGGTGCATAG+AGG | - | chr8.1:20385260-20385279 | None:intergenic | 55.0% | |
TTGTCGGCGAGGACAAGTTG+TGG | - | chr8.1:20383095-20383114 | None:intergenic | 55.0% | |
GGAGGAAAAGCTTGTCGGCG+AGG | - | chr8.1:20383106-20383125 | None:intergenic | 60.0% | |
TGCAGCCTCCTCAAGTGAGG+TGG | - | chr8.1:20384637-20384656 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 20383062 | 20386540 | 20383062 | ID=MS.gene057144 |
chr8.1 | mRNA | 20383062 | 20386540 | 20383062 | ID=MS.gene057144.t1;Parent=MS.gene057144 |
chr8.1 | exon | 20383062 | 20383200 | 20383062 | ID=MS.gene057144.t1.exon1;Parent=MS.gene057144.t1 |
chr8.1 | CDS | 20383062 | 20383200 | 20383062 | ID=cds.MS.gene057144.t1;Parent=MS.gene057144.t1 |
chr8.1 | exon | 20383279 | 20383393 | 20383279 | ID=MS.gene057144.t1.exon2;Parent=MS.gene057144.t1 |
chr8.1 | CDS | 20383279 | 20383393 | 20383279 | ID=cds.MS.gene057144.t1;Parent=MS.gene057144.t1 |
chr8.1 | exon | 20385095 | 20385185 | 20385095 | ID=MS.gene057144.t1.exon3;Parent=MS.gene057144.t1 |
chr8.1 | CDS | 20385095 | 20385185 | 20385095 | ID=cds.MS.gene057144.t1;Parent=MS.gene057144.t1 |
chr8.1 | exon | 20385271 | 20385416 | 20385271 | ID=MS.gene057144.t1.exon4;Parent=MS.gene057144.t1 |
chr8.1 | CDS | 20385271 | 20385416 | 20385271 | ID=cds.MS.gene057144.t1;Parent=MS.gene057144.t1 |
chr8.1 | exon | 20385510 | 20385729 | 20385510 | ID=MS.gene057144.t1.exon5;Parent=MS.gene057144.t1 |
chr8.1 | CDS | 20385510 | 20385729 | 20385510 | ID=cds.MS.gene057144.t1;Parent=MS.gene057144.t1 |
chr8.1 | exon | 20385839 | 20385947 | 20385839 | ID=MS.gene057144.t1.exon6;Parent=MS.gene057144.t1 |
chr8.1 | CDS | 20385839 | 20385947 | 20385839 | ID=cds.MS.gene057144.t1;Parent=MS.gene057144.t1 |
chr8.1 | exon | 20386097 | 20386265 | 20386097 | ID=MS.gene057144.t1.exon7;Parent=MS.gene057144.t1 |
chr8.1 | CDS | 20386097 | 20386265 | 20386097 | ID=cds.MS.gene057144.t1;Parent=MS.gene057144.t1 |
chr8.1 | exon | 20386366 | 20386540 | 20386366 | ID=MS.gene057144.t1.exon8;Parent=MS.gene057144.t1 |
chr8.1 | CDS | 20386366 | 20386540 | 20386366 | ID=cds.MS.gene057144.t1;Parent=MS.gene057144.t1 |
Gene Sequence |
Protein sequence |