Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057145.t1 | XP_003608889.1 | 99.5 | 387 | 2 | 0 | 1 | 387 | 1 | 387 | 1.70E-190 | 675.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057145.t1 | Q93Y35 | 76.0 | 387 | 93 | 0 | 1 | 387 | 1 | 387 | 1.2e-160 | 567.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057145.t1 | G7JMM6 | 99.5 | 387 | 2 | 0 | 1 | 387 | 1 | 387 | 1.3e-190 | 675.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene05190 | MS.gene057145 | 0.802812 | 4.70E-49 | -1.69E-46 |
MS.gene057144 | MS.gene057145 | 0.998084 | 8.88E-256 | -1.69E-46 |
MS.gene057145 | MS.gene24253 | 0.804181 | 2.44E-49 | -1.69E-46 |
MS.gene057145 | MS.gene24255 | 0.807029 | 6.17E-50 | -1.69E-46 |
MS.gene057145 | MS.gene27247 | 0.804162 | 2.47E-49 | -1.69E-46 |
MS.gene057145 | MS.gene39663 | 0.832729 | 8.01E-56 | -1.69E-46 |
MS.gene057145 | MS.gene39664 | 0.824537 | 7.65E-54 | -1.69E-46 |
MS.gene057145 | MS.gene45419 | 0.809152 | 2.18E-50 | -1.69E-46 |
MS.gene057145 | MS.gene48279 | 0.962483 | 6.24E-121 | -1.69E-46 |
MS.gene057145 | MS.gene48281 | 0.961939 | 2.75E-120 | -1.69E-46 |
MS.gene057145 | MS.gene48400 | 0.991913 | 3.05E-190 | -1.69E-46 |
MS.gene057145 | MS.gene51920 | 0.809552 | 1.79E-50 | -1.69E-46 |
MS.gene057145 | MS.gene52281 | 0.817524 | 3.15E-52 | -1.69E-46 |
MS.gene057145 | MS.gene57444 | 0.806628 | 7.50E-50 | -1.69E-46 |
MS.gene057145 | MS.gene66119 | 0.803474 | 3.43E-49 | -1.69E-46 |
MS.gene057145 | MS.gene72901 | 0.809515 | 1.82E-50 | -1.69E-46 |
MS.gene057145 | MS.gene72902 | 0.810194 | 1.30E-50 | -1.69E-46 |
MS.gene057145 | MS.gene97690 | 0.807079 | 6.02E-50 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057145.t1 | MTR_4g104080 | 99.483 | 387 | 2 | 0 | 1 | 387 | 1 | 387 | 0.0 | 783 |
MS.gene057145.t1 | MTR_8g046560 | 84.342 | 281 | 25 | 4 | 86 | 366 | 260 | 521 | 2.15e-156 | 451 |
MS.gene057145.t1 | MTR_8g464820 | 95.673 | 208 | 8 | 1 | 96 | 303 | 160 | 366 | 2.77e-141 | 406 |
MS.gene057145.t1 | MTR_7g076160 | 24.291 | 247 | 180 | 3 | 127 | 371 | 173 | 414 | 5.65e-19 | 88.6 |
MS.gene057145.t1 | MTR_8g432630 | 23.481 | 362 | 254 | 11 | 23 | 371 | 65 | 416 | 1.54e-18 | 87.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057145.t1 | AT4G24820 | 82.687 | 387 | 67 | 0 | 1 | 387 | 1 | 387 | 0.0 | 661 |
MS.gene057145.t1 | AT4G24820 | 82.687 | 387 | 67 | 0 | 1 | 387 | 1 | 387 | 0.0 | 661 |
MS.gene057145.t1 | AT3G61140 | 25.100 | 251 | 180 | 4 | 124 | 372 | 169 | 413 | 5.59e-18 | 85.5 |
Find 76 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAGAAGTCTCCTTGCTTAA+TGG | 0.172394 | 8.1:-20457037 | None:intergenic |
TTTAGCTTTGTCAATGCTTT+TGG | 0.209748 | 8.1:-20455953 | None:intergenic |
CGATCACACGAGACAGTTTC+TGG | 0.218957 | 8.1:-20457071 | None:intergenic |
ACATTGCAGCTTGGTTTCTT+TGG | 0.250558 | 8.1:+20455910 | MS.gene057145:CDS |
CCTAGTTGCTGATTCCGTTT+TGG | 0.319218 | 8.1:+20453862 | MS.gene057145:CDS |
GTAAAATATAAAGGTGTCAT+AGG | 0.319394 | 8.1:-20456217 | None:intergenic |
GAAGGCGGCCACATTGTTCT+TGG | 0.328664 | 8.1:+20456158 | MS.gene057145:CDS |
GGATATGGATCGTGTCCTTT+TGG | 0.338072 | 8.1:+20453883 | MS.gene057145:CDS |
GCAACTAGGGTTTCGTATAA+AGG | 0.352561 | 8.1:-20453848 | None:intergenic |
AAAGCATTGACAAAGCTAAA+AGG | 0.352604 | 8.1:+20455956 | MS.gene057145:CDS |
AAGTCTTTCTTCTCAGCATT+TGG | 0.381841 | 8.1:+20456487 | MS.gene057145:CDS |
CTTGAACATCTTGTTGTTTG+AGG | 0.383548 | 8.1:-20453685 | None:intergenic |
CTGCCCAACTGCAACAGTCT+TGG | 0.384938 | 8.1:-20455866 | None:intergenic |
CAAAACGGTGTAAAATATAA+AGG | 0.388515 | 8.1:-20456226 | None:intergenic |
AAGGAGACTTCTTGTTGAAC+AGG | 0.394711 | 8.1:+20457046 | MS.gene057145:CDS |
TGTAAGATTGATAAAGTTGC+AGG | 0.397494 | 8.1:+20456964 | MS.gene057145:CDS |
TAAAGAGCATTCTTAGCATC+AGG | 0.401822 | 8.1:-20457006 | None:intergenic |
GAAGCCATGGCAAAAGCGTT+TGG | 0.405490 | 8.1:+20456780 | MS.gene057145:CDS |
TCAATCACTGTCAAGATCTC+AGG | 0.407014 | 8.1:-20456412 | None:intergenic |
GTCTCGTGTGATCGATCTTT+AGG | 0.409640 | 8.1:+20457080 | MS.gene057145:CDS |
CTTGTATTGACAACCATATA+AGG | 0.412125 | 8.1:-20456467 | None:intergenic |
GCTATTTGCATCCACACTTC+CGG | 0.415118 | 8.1:+20456688 | MS.gene057145:CDS |
CTCCTTGCTTAATGGTTGCT+TGG | 0.422700 | 8.1:-20457029 | None:intergenic |
CAGAGTTTCCTTAAAACAAA+AGG | 0.442207 | 8.1:+20456269 | MS.gene057145:CDS |
CCAACTTAATTTGCTCCGTC+AGG | 0.445020 | 8.1:-20456662 | None:intergenic |
CCAAAACGGAATCAGCAACT+AGG | 0.455755 | 8.1:-20453862 | None:intergenic |
GCAGCTTGGTTTCTTTGGCA+TGG | 0.461721 | 8.1:+20455915 | MS.gene057145:CDS |
TGTTTGAAGAAGGTGGTGAC+TGG | 0.465631 | 8.1:+20456073 | MS.gene057145:CDS |
TGTTATTATGCTGGTCAAAA+CGG | 0.481534 | 8.1:-20456241 | None:intergenic |
AAGAAGGTGGTGACTGGGAA+AGG | 0.487909 | 8.1:+20456079 | MS.gene057145:CDS |
TACATACCTTGTCCCCAATC+CGG | 0.495723 | 8.1:-20455731 | None:intergenic |
TGAAGTTCGTGAGGCTCACT+TGG | 0.496675 | 8.1:+20455689 | MS.gene057145:CDS |
TTTGAGGAGGAAAAGCTTGT+CGG | 0.496982 | 8.1:-20453669 | None:intergenic |
TTTCATCCGGATTGGGGACA+AGG | 0.498726 | 8.1:+20455725 | MS.gene057145:CDS |
TATGACAGCTTGTTTGAAGA+AGG | 0.509351 | 8.1:+20456063 | MS.gene057145:intron |
GTATTCTATACATTGCAGCT+TGG | 0.510078 | 8.1:+20455901 | MS.gene057145:CDS |
TGTTGCAGTTGGGCAGAAGA+TGG | 0.511519 | 8.1:+20455873 | MS.gene057145:CDS |
TTTGACCAGCATAATAACAT+TGG | 0.511922 | 8.1:+20456245 | MS.gene057145:CDS |
TTCAATTTCGTCAAGGAACA+TGG | 0.512182 | 8.1:+20453740 | MS.gene057145:CDS |
TGATCTCTCTCATGTAATAC+CGG | 0.514625 | 8.1:-20456707 | None:intergenic |
TCTGTCCAATGTTATTATGC+TGG | 0.519046 | 8.1:-20456250 | None:intergenic |
GTGACTGGGAAAGGAAGAAT+AGG | 0.520244 | 8.1:+20456088 | MS.gene057145:CDS |
TGTTATCTTGAGATGCTCCA+AGG | 0.535770 | 8.1:-20455839 | None:intergenic |
AAACCAAGACTGTTGCAGTT+GGG | 0.539841 | 8.1:+20455863 | MS.gene057145:CDS |
GCTGATGCCGAGGAAAACTT+AGG | 0.544982 | 8.1:+20455660 | MS.gene057145:CDS |
TAAAATATAAAGGTGTCATA+GGG | 0.545376 | 8.1:-20456216 | None:intergenic |
GACACGATCCATATCCAAAA+CGG | 0.546950 | 8.1:-20453876 | None:intergenic |
GAAACCAAGACTGTTGCAGT+TGG | 0.547733 | 8.1:+20455862 | MS.gene057145:CDS |
CCTGACGGAGCAAATTAAGT+TGG | 0.551415 | 8.1:+20456662 | MS.gene057145:CDS |
TAGCACGCATGGAGTCCAAA+AGG | 0.551715 | 8.1:-20453898 | None:intergenic |
ATAGGTAGTAAAGGTTGAGA+TGG | 0.554018 | 8.1:-20456184 | None:intergenic |
TATGCACCAGGAGAAAGCCT+TGG | 0.557453 | 8.1:+20455822 | MS.gene057145:intron |
CAAAACGGAATCAGCAACTA+GGG | 0.569243 | 8.1:-20453861 | None:intergenic |
GAGTGTGACAATTGAAGCCA+TGG | 0.570854 | 8.1:+20456767 | MS.gene057145:CDS |
ATCGCGTCAATGGCAAATGA+AGG | 0.573429 | 8.1:+20453614 | None:intergenic |
CTCATGTAATACCGGAAGTG+TGG | 0.574056 | 8.1:-20456699 | None:intergenic |
ATTCATTTCAGCTGGCCTGA+CGG | 0.578789 | 8.1:+20456647 | MS.gene057145:intron |
AATAGGCTGAAAGTGTATGA+AGG | 0.580095 | 8.1:+20456105 | MS.gene057145:CDS |
GAACATCTTGTTGTTTGAGG+AGG | 0.589500 | 8.1:-20453682 | None:intergenic |
TACCAAGCAACCATTAAGCA+AGG | 0.592283 | 8.1:+20457027 | MS.gene057145:CDS |
GTTTGAAGAAGGTGGTGACT+GGG | 0.592873 | 8.1:+20456074 | MS.gene057145:CDS |
TTCGAGTGGACATGCAGTAG+AGG | 0.594533 | 8.1:-20456128 | None:intergenic |
GCTGCAATGTATAGAATACC+AGG | 0.602890 | 8.1:-20455897 | None:intergenic |
GGAGGAAAAGCTTGTCGGCG+AGG | 0.605693 | 8.1:-20453664 | None:intergenic |
CACTCGAAATTTCGAGAAGG+CGG | 0.611108 | 8.1:+20456143 | MS.gene057145:CDS |
CGCCTTCTCGAAATTTCGAG+TGG | 0.620270 | 8.1:-20456142 | None:intergenic |
TTGTCGGCGAGGACAAGTTG+TGG | 0.627071 | 8.1:-20453653 | None:intergenic |
AAAGAGCATTCTTAGCATCA+GGG | 0.643450 | 8.1:-20457005 | None:intergenic |
AAAAGCGTTTGGAGTATCTG+TGG | 0.655763 | 8.1:+20456791 | MS.gene057145:CDS |
GGAAGTGTGGATGCAAATAG+CGG | 0.661860 | 8.1:-20456686 | None:intergenic |
AGGTGAGAGTGAAGTTCGTG+AGG | 0.662611 | 8.1:+20455680 | MS.gene057145:CDS |
GTCCACTCGAAATTTCGAGA+AGG | 0.663292 | 8.1:+20456140 | MS.gene057145:CDS |
AGTTGGGCAGAAGATGGACC+TGG | 0.674047 | 8.1:+20455879 | MS.gene057145:CDS |
GACAGCTTGTTTGAAGAAGG+TGG | 0.675197 | 8.1:+20456066 | MS.gene057145:intron |
GAGCATTCTTAGCATCAGGG+CGG | 0.753729 | 8.1:-20457002 | None:intergenic |
GATGGAATCCAAGAACAATG+TGG | 0.760047 | 8.1:-20456166 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGAAGAAAATTTATTTAATA+GGG | + | chr8.1:20454031-20454050 | MS.gene057145:intron | 10.0% |
!! | TTGAAGAAAATTTATTTAAT+AGG | + | chr8.1:20454030-20454049 | MS.gene057145:intron | 10.0% |
!! | TCAATAAATACATATCTTAA+TGG | + | chr8.1:20454976-20454995 | MS.gene057145:intron | 15.0% |
!! | TGAAAAACAAAAGAAAATTA+GGG | - | chr8.1:20453817-20453836 | None:intergenic | 15.0% |
!! | TTATATAGTGAAGAAAATTA+GGG | - | chr8.1:20453793-20453812 | None:intergenic | 15.0% |
!! | TTTATATAGTGAAGAAAATT+AGG | - | chr8.1:20453794-20453813 | None:intergenic | 15.0% |
!!! | TATAATTTTCTGTTAAGAAT+GGG | + | chr8.1:20456020-20456039 | MS.gene057145:intron | 15.0% |
!! | AAAATCCAAAATTCACAATT+GGG | - | chr8.1:20453993-20454012 | None:intergenic | 20.0% |
!! | ATATATCCTAGAAAGATTAA+TGG | - | chr8.1:20455391-20455410 | None:intergenic | 20.0% |
!! | ATTACATATATTTGTTTCCA+GGG | + | chr8.1:20456906-20456925 | MS.gene057145:intron | 20.0% |
!! | CAATATGTAAAAATAAACTC+TGG | - | chr8.1:20454607-20454626 | None:intergenic | 20.0% |
!! | GTGAAAAACAAAAGAAAATT+AGG | - | chr8.1:20453818-20453837 | None:intergenic | 20.0% |
!! | TATATCCTAGAAAGATTAAT+GGG | - | chr8.1:20455390-20455409 | None:intergenic | 20.0% |
!! | TTAACAGAAAATTATAGCAA+AGG | - | chr8.1:20456016-20456035 | None:intergenic | 20.0% |
!! | TTGAATTGTACTAATGTATT+TGG | + | chr8.1:20454103-20454122 | MS.gene057145:intron | 20.0% |
!!! | ACAACTTATTCATCATTTTT+AGG | - | chr8.1:20454857-20454876 | None:intergenic | 20.0% |
!!! | CTATAATTTTCTGTTAAGAA+TGG | + | chr8.1:20456019-20456038 | MS.gene057145:intron | 20.0% |
!!! | TAAAATATAAAGGTGTCATA+GGG | - | chr8.1:20456219-20456238 | None:intergenic | 20.0% |
! | AAAAAGTTCATAGGTAGTAA+AGG | - | chr8.1:20456196-20456215 | None:intergenic | 25.0% |
! | AAATCCAAAATTCACAATTG+GGG | - | chr8.1:20453992-20454011 | None:intergenic | 25.0% |
! | AATTACCCATTAATCTTTCT+AGG | + | chr8.1:20455382-20455401 | MS.gene057145:intron | 25.0% |
! | AGAAAAGATAAATGGTGTAA+AGG | - | chr8.1:20456320-20456339 | None:intergenic | 25.0% |
! | CAAAACGGTGTAAAATATAA+AGG | - | chr8.1:20456229-20456248 | None:intergenic | 25.0% |
! | CAAAATCCAAAATTCACAAT+TGG | - | chr8.1:20453994-20454013 | None:intergenic | 25.0% |
! | CATTACATATATTTGTTTCC+AGG | + | chr8.1:20456905-20456924 | MS.gene057145:intron | 25.0% |
! | CGGTTAAAAGAAAAGATAAA+TGG | - | chr8.1:20456328-20456347 | None:intergenic | 25.0% |
! | TAAAACAACCAAGAAAGAAA+AGG | + | chr8.1:20454952-20454971 | MS.gene057145:intron | 25.0% |
! | TGATTAGATTACAATGTTGT+GGG | + | chr8.1:20456874-20456893 | MS.gene057145:intron | 25.0% |
! | TTGATTAGATTACAATGTTG+TGG | + | chr8.1:20456873-20456892 | MS.gene057145:intron | 25.0% |
!! | AAATAATAGTTTGTATCTCG+AGG | - | chr8.1:20455575-20455594 | None:intergenic | 25.0% |
!! | AATTCTAGAGATTCTTGAAT+AGG | - | chr8.1:20454370-20454389 | None:intergenic | 25.0% |
!! | ATTCTAGAGATTCTTGAATA+GGG | - | chr8.1:20454369-20454388 | None:intergenic | 25.0% |
!! | TCATATGAATGTCTCATTTT+AGG | + | chr8.1:20455634-20455653 | MS.gene057145:intron | 25.0% |
!! | TCTGTTCTTAAATGTTTTAC+TGG | + | chr8.1:20454136-20454155 | MS.gene057145:intron | 25.0% |
!! | TTATTGATCCTTTTCTTTCT+TGG | - | chr8.1:20454963-20454982 | None:intergenic | 25.0% |
!!! | ATTTTGAAATTCATTTCAGC+TGG | + | chr8.1:20456639-20456658 | MS.gene057145:intron | 25.0% |
!!! | CAAAATCCTTATTTTTCATC+CGG | + | chr8.1:20455712-20455731 | MS.gene057145:CDS | 25.0% |
!!! | GTAAAATATAAAGGTGTCAT+AGG | - | chr8.1:20456220-20456239 | None:intergenic | 25.0% |
!!! | TAGAAGTACCTTTTGTTTTA+AGG | - | chr8.1:20456280-20456299 | None:intergenic | 25.0% |
!!! | TATTTTTACATATTGTGACC+TGG | + | chr8.1:20454612-20454631 | MS.gene057145:intron | 25.0% |
AAACGAAAAACCAAGTGATT+TGG | - | chr8.1:20456845-20456864 | None:intergenic | 30.0% | |
AAATCGACATATGATCTGAA+TGG | - | chr8.1:20454458-20454477 | None:intergenic | 30.0% | |
AACGAAAAACCAAGTGATTT+GGG | - | chr8.1:20456844-20456863 | None:intergenic | 30.0% | |
AAGTACAAAACCTAGAATAC+TGG | + | chr8.1:20455483-20455502 | MS.gene057145:intron | 30.0% | |
AGTACAAAACCTAGAATACT+GGG | + | chr8.1:20455484-20455503 | MS.gene057145:intron | 30.0% | |
AGTATAATGAGTCTTTGTTG+GGG | + | chr8.1:20454500-20454519 | MS.gene057145:intron | 30.0% | |
CAGAGTTTCCTTAAAACAAA+AGG | + | chr8.1:20456269-20456288 | MS.gene057145:CDS | 30.0% | |
CTTGTAAGATTCCAAAAACT+GGG | - | chr8.1:20456748-20456767 | None:intergenic | 30.0% | |
GAACATAGAAGCAAAAAGAT+AGG | - | chr8.1:20456606-20456625 | None:intergenic | 30.0% | |
GAGTATAATGAGTCTTTGTT+GGG | + | chr8.1:20454499-20454518 | MS.gene057145:intron | 30.0% | |
GTGAAGAAAATTAGGGTTTA+CGG | - | chr8.1:20453786-20453805 | None:intergenic | 30.0% | |
TCTTGTAAGATTCCAAAAAC+TGG | - | chr8.1:20456749-20456768 | None:intergenic | 30.0% | |
TGAGTATAATGAGTCTTTGT+TGG | + | chr8.1:20454498-20454517 | MS.gene057145:intron | 30.0% | |
TGTAAGATTGATAAAGTTGC+AGG | + | chr8.1:20456964-20456983 | MS.gene057145:CDS | 30.0% | |
TGTTATTATGCTGGTCAAAA+CGG | - | chr8.1:20456244-20456263 | None:intergenic | 30.0% | |
TTTACATGATGCTACATCAT+TGG | - | chr8.1:20455004-20455023 | None:intergenic | 30.0% | |
TTTGACCAGCATAATAACAT+TGG | + | chr8.1:20456245-20456264 | MS.gene057145:CDS | 30.0% | |
! | ACTGTTTCTTTCCTTGATTA+TGG | - | chr8.1:20454802-20454821 | None:intergenic | 30.0% |
! | AGATGTTTTCAATTTCGTCA+AGG | + | chr8.1:20453733-20453752 | MS.gene057145:CDS | 30.0% |
! | ATCAAGGAAAGAAACAGTTT+TGG | + | chr8.1:20454804-20454823 | MS.gene057145:intron | 30.0% |
! | CAAAACTTTCATTTTCACTC+TGG | + | chr8.1:20455140-20455159 | MS.gene057145:intron | 30.0% |
! | CAGAGTGAAAATGAAAGTTT+TGG | - | chr8.1:20455142-20455161 | None:intergenic | 30.0% |
! | CTTGTATTGACAACCATATA+AGG | - | chr8.1:20456470-20456489 | None:intergenic | 30.0% |
! | TAACTAGACTAATTTGCATC+AGG | + | chr8.1:20456378-20456397 | MS.gene057145:intron | 30.0% |
! | TCCACATCTTAAAGAGTTTT+TGG | + | chr8.1:20456441-20456460 | MS.gene057145:CDS | 30.0% |
! | TTAACCCCAATTGTGAATTT+TGG | + | chr8.1:20453985-20454004 | MS.gene057145:intron | 30.0% |
! | TTTTGGATTTTGAATGCACT+AGG | + | chr8.1:20454002-20454021 | MS.gene057145:intron | 30.0% |
!! | AAAGCATTGACAAAGCTAAA+AGG | + | chr8.1:20455956-20455975 | MS.gene057145:CDS | 30.0% |
!! | CTTAGTTCTATATGGATGTA+TGG | - | chr8.1:20454901-20454920 | None:intergenic | 30.0% |
!! | TAGAATCACTTTTGAAGATG+TGG | - | chr8.1:20455296-20455315 | None:intergenic | 30.0% |
!! | TCCAAAAACTCTTTAAGATG+TGG | - | chr8.1:20456445-20456464 | None:intergenic | 30.0% |
!! | TGTCATTTATTCCCAGTTTT+TGG | + | chr8.1:20456734-20456753 | MS.gene057145:CDS | 30.0% |
!!! | TCTTTTGTTTTTCACAGACA+TGG | + | chr8.1:20453823-20453842 | MS.gene057145:intron | 30.0% |
!!! | TTTAGCTTTGTCAATGCTTT+TGG | - | chr8.1:20455956-20455975 | None:intergenic | 30.0% |
AAAAACCCCAGAATAAGCAA+GGG | - | chr8.1:20454641-20454660 | None:intergenic | 35.0% | |
AAATAGCAAAGCAACGAAGA+GGG | - | chr8.1:20455256-20455275 | None:intergenic | 35.0% | |
AACTTCAATCAAACTGCTAG+AGG | - | chr8.1:20454403-20454422 | None:intergenic | 35.0% | |
AAGTCTTTCTTCTCAGCATT+TGG | + | chr8.1:20456487-20456506 | MS.gene057145:CDS | 35.0% | |
ACTTCAATCAAACTGCTAGA+GGG | - | chr8.1:20454402-20454421 | None:intergenic | 35.0% | |
AGAATAGAAAATGCAAAGGC+TGG | + | chr8.1:20455507-20455526 | MS.gene057145:intron | 35.0% | |
ATAGGTAGTAAAGGTTGAGA+TGG | - | chr8.1:20456187-20456206 | None:intergenic | 35.0% | |
CATGGAAATCACCATAATCA+AGG | + | chr8.1:20454788-20454807 | MS.gene057145:intron | 35.0% | |
CCATATAGAACTAAGCTAGT+TGG | + | chr8.1:20454906-20454925 | MS.gene057145:intron | 35.0% | |
CTTGATTATGGTGATTTCCA+TGG | - | chr8.1:20454790-20454809 | None:intergenic | 35.0% | |
GCAGTTTGATTGAAGTTGAA+CGG | + | chr8.1:20454406-20454425 | MS.gene057145:intron | 35.0% | |
GCCAAGAAATAACAGAACAA+CGG | - | chr8.1:20456348-20456367 | None:intergenic | 35.0% | |
GTATAATGAGTCTTTGTTGG+GGG | + | chr8.1:20454501-20454520 | MS.gene057145:intron | 35.0% | |
GTATTCTATACATTGCAGCT+TGG | + | chr8.1:20455901-20455920 | MS.gene057145:CDS | 35.0% | |
GTCATAGGGAAAAAGTTCAT+AGG | - | chr8.1:20456205-20456224 | None:intergenic | 35.0% | |
TATAGAACTAAGCTAGTTGG+AGG | + | chr8.1:20454909-20454928 | MS.gene057145:intron | 35.0% | |
TATATACCCAATGTCACCAA+TGG | + | chr8.1:20454710-20454729 | MS.gene057145:intron | 35.0% | |
TATGAGCTATCGTTAGTACA+AGG | - | chr8.1:20455619-20455638 | None:intergenic | 35.0% | |
TCCAAACATACTTCTTTAGC+AGG | - | chr8.1:20454328-20454347 | None:intergenic | 35.0% | |
TCTGTCCAATGTTATTATGC+TGG | - | chr8.1:20456253-20456272 | None:intergenic | 35.0% | |
TCTTCAAACAAGCTGTCATA+TGG | - | chr8.1:20456063-20456082 | None:intergenic | 35.0% | |
TGATCTCTCTCATGTAATAC+CGG | - | chr8.1:20456710-20456729 | None:intergenic | 35.0% | |
TGCAATTACTATGACACATC+TGG | - | chr8.1:20455534-20455553 | None:intergenic | 35.0% | |
TGGGAGAATAGAAAATGCAA+AGG | + | chr8.1:20455503-20455522 | MS.gene057145:intron | 35.0% | |
TTAATAATAACCGCAGAGAC+AGG | - | chr8.1:20455364-20455383 | None:intergenic | 35.0% | |
TTAGATTACAATGTTGTGGG+AGG | + | chr8.1:20456877-20456896 | MS.gene057145:intron | 35.0% | |
TTCAATTTCGTCAAGGAACA+TGG | + | chr8.1:20453740-20453759 | MS.gene057145:CDS | 35.0% | |
TTCTATTCTCCCAGTATTCT+AGG | - | chr8.1:20455496-20455515 | None:intergenic | 35.0% | |
! | AATAGGCTGAAAGTGTATGA+AGG | + | chr8.1:20456105-20456124 | MS.gene057145:CDS | 35.0% |
! | ATTTTCATCTGTCAGCTCAA+AGG | - | chr8.1:20455106-20455125 | None:intergenic | 35.0% |
! | TATGACAGCTTGTTTGAAGA+AGG | + | chr8.1:20456063-20456082 | MS.gene057145:intron | 35.0% |
! | TCCTGCTAAAGAAGTATGTT+TGG | + | chr8.1:20454324-20454343 | MS.gene057145:intron | 35.0% |
!! | AAAGAGCATTCTTAGCATCA+GGG | - | chr8.1:20457008-20457027 | None:intergenic | 35.0% |
!! | ACCGTTGTTCTGTTATTTCT+TGG | + | chr8.1:20456344-20456363 | MS.gene057145:intron | 35.0% |
!! | ATCATCAATTTTAGCACGCA+TGG | - | chr8.1:20453912-20453931 | None:intergenic | 35.0% |
!! | CCAACTAGCTTAGTTCTATA+TGG | - | chr8.1:20454909-20454928 | None:intergenic | 35.0% |
!! | CTTATTTTTCATCCGGATTG+GGG | + | chr8.1:20455719-20455738 | MS.gene057145:CDS | 35.0% |
!! | CTTGAACATCTTGTTGTTTG+AGG | - | chr8.1:20453688-20453707 | None:intergenic | 35.0% |
!! | GAGTTTTTGGACTCCTTATA+TGG | + | chr8.1:20456454-20456473 | MS.gene057145:CDS | 35.0% |
!! | TAAAGAGCATTCTTAGCATC+AGG | - | chr8.1:20457009-20457028 | None:intergenic | 35.0% |
!! | TATCACGTTTTATTGCAGCT+GGG | + | chr8.1:20456932-20456951 | MS.gene057145:CDS | 35.0% |
!!! | CCTTATTTTTCATCCGGATT+GGG | + | chr8.1:20455718-20455737 | MS.gene057145:CDS | 35.0% |
!!! | TCCTTATTTTTCATCCGGAT+TGG | + | chr8.1:20455717-20455736 | MS.gene057145:CDS | 35.0% |
!!! | TGTTTTGAGGCTAGCTATTA+TGG | - | chr8.1:20454747-20454766 | None:intergenic | 35.0% |
AAACCAAGACTGTTGCAGTT+GGG | + | chr8.1:20455863-20455882 | MS.gene057145:CDS | 40.0% | |
AAGGAGACTTCTTGTTGAAC+AGG | + | chr8.1:20457046-20457065 | MS.gene057145:CDS | 40.0% | |
AATAAAACGTGATAGCTCCC+TGG | - | chr8.1:20456926-20456945 | None:intergenic | 40.0% | |
ACATTGCAGCTTGGTTTCTT+TGG | + | chr8.1:20455910-20455929 | MS.gene057145:CDS | 40.0% | |
ATTCTTGAATAGGGAACACG+TGG | - | chr8.1:20454360-20454379 | None:intergenic | 40.0% | |
CAAAACGGAATCAGCAACTA+GGG | - | chr8.1:20453864-20453883 | None:intergenic | 40.0% | |
CAAATAGCAAAGCAACGAAG+AGG | - | chr8.1:20455257-20455276 | None:intergenic | 40.0% | |
CAAGAAGTCTCCTTGCTTAA+TGG | - | chr8.1:20457040-20457059 | None:intergenic | 40.0% | |
CAATGTCACCAATGGCTTAT+GGG | + | chr8.1:20454718-20454737 | MS.gene057145:intron | 40.0% | |
CAGGCTAAATTTCATCCATC+AGG | - | chr8.1:20455345-20455364 | None:intergenic | 40.0% | |
CCATCAGGAATTCTAAGTTC+AGG | - | chr8.1:20455330-20455349 | None:intergenic | 40.0% | |
CCCAATCCGGATGAAAAATA+AGG | - | chr8.1:20455721-20455740 | None:intergenic | 40.0% | |
CCTGAACTTAGAATTCCTGA+TGG | + | chr8.1:20455327-20455346 | MS.gene057145:intron | 40.0% | |
CTTCAATCAAACTGCTAGAG+GGG | - | chr8.1:20454401-20454420 | None:intergenic | 40.0% | |
GAAAAACCCCAGAATAAGCA+AGG | - | chr8.1:20454642-20454661 | None:intergenic | 40.0% | |
GACACGATCCATATCCAAAA+CGG | - | chr8.1:20453879-20453898 | None:intergenic | 40.0% | |
GATGGAATCCAAGAACAATG+TGG | - | chr8.1:20456169-20456188 | None:intergenic | 40.0% | |
GCAACTAGGGTTTCGTATAA+AGG | - | chr8.1:20453851-20453870 | None:intergenic | 40.0% | |
GCTGCAATGTATAGAATACC+AGG | - | chr8.1:20455900-20455919 | None:intergenic | 40.0% | |
TACCAAGCAACCATTAAGCA+AGG | + | chr8.1:20457027-20457046 | MS.gene057145:CDS | 40.0% | |
TCAATCACTGTCAAGATCTC+AGG | - | chr8.1:20456415-20456434 | None:intergenic | 40.0% | |
TGAAATTTAGCCTGTCTCTG+CGG | + | chr8.1:20455351-20455370 | MS.gene057145:intron | 40.0% | |
TGAATGCATCCCAAATCACT+TGG | + | chr8.1:20456832-20456851 | MS.gene057145:intron | 40.0% | |
TGTTATCTTGAGATGCTCCA+AGG | - | chr8.1:20455842-20455861 | None:intergenic | 40.0% | |
TTCAATCAAACTGCTAGAGG+GGG | - | chr8.1:20454400-20454419 | None:intergenic | 40.0% | |
TTTGAGGAGGAAAAGCTTGT+CGG | - | chr8.1:20453672-20453691 | None:intergenic | 40.0% | |
! | ACTCTCACCTAAGTTTTCCT+CGG | - | chr8.1:20455670-20455689 | None:intergenic | 40.0% |
! | CAAAGGCTGGTGATTTTTCA+GGG | - | chr8.1:20455089-20455108 | None:intergenic | 40.0% |
! | CATAAGCCATTGGTGACATT+GGG | - | chr8.1:20454719-20454738 | None:intergenic | 40.0% |
! | GACTAATTTGCATCAGGTAG+TGG | + | chr8.1:20456384-20456403 | MS.gene057145:intron | 40.0% |
! | TCAAAGGCTGGTGATTTTTC+AGG | - | chr8.1:20455090-20455109 | None:intergenic | 40.0% |
! | TTTGAGGCTAGCTATTATGG+TGG | - | chr8.1:20454744-20454763 | None:intergenic | 40.0% |
!! | AAAAGCGTTTGGAGTATCTG+TGG | + | chr8.1:20456791-20456810 | MS.gene057145:CDS | 40.0% |
!! | CTATCACGTTTTATTGCAGC+TGG | + | chr8.1:20456931-20456950 | MS.gene057145:CDS | 40.0% |
!! | CTCTTCGTTGCTTTGCTATT+TGG | + | chr8.1:20455255-20455274 | MS.gene057145:intron | 40.0% |
!! | GAACATCTTGTTGTTTGAGG+AGG | - | chr8.1:20453685-20453704 | None:intergenic | 40.0% |
!!! | TGCTGATTCCGTTTTGGATA+TGG | + | chr8.1:20453868-20453887 | MS.gene057145:CDS | 40.0% |
ACTGTAGGACATCTTCAGTC+TGG | - | chr8.1:20455230-20455249 | None:intergenic | 45.0% | |
ACTTGATTCCAGCAGCAGAA+AGG | - | chr8.1:20455789-20455808 | None:intergenic | 45.0% | |
CACTCGAAATTTCGAGAAGG+CGG | + | chr8.1:20456143-20456162 | MS.gene057145:CDS | 45.0% | |
CATGGCATCTACCATTCACT+GGG | - | chr8.1:20454772-20454791 | None:intergenic | 45.0% | |
CCAAAACGGAATCAGCAACT+AGG | - | chr8.1:20453865-20453884 | None:intergenic | 45.0% | |
CCAATGTCACCAATGGCTTA+TGG | + | chr8.1:20454717-20454736 | MS.gene057145:intron | 45.0% | |
CCTGACGGAGCAAATTAAGT+TGG | + | chr8.1:20456662-20456681 | MS.gene057145:CDS | 45.0% | |
CTCAAAACATGCCCAGTGAA+TGG | + | chr8.1:20454758-20454777 | MS.gene057145:intron | 45.0% | |
CTCATGTAATACCGGAAGTG+TGG | - | chr8.1:20456702-20456721 | None:intergenic | 45.0% | |
CTCCTTGCTTAATGGTTGCT+TGG | - | chr8.1:20457032-20457051 | None:intergenic | 45.0% | |
GAAACCAAGACTGTTGCAGT+TGG | + | chr8.1:20455862-20455881 | MS.gene057145:CDS | 45.0% | |
GAGTGTGACAATTGAAGCCA+TGG | + | chr8.1:20456767-20456786 | MS.gene057145:CDS | 45.0% | |
GCTATTTGCATCCACACTTC+CGG | + | chr8.1:20456688-20456707 | MS.gene057145:CDS | 45.0% | |
GTCCACTCGAAATTTCGAGA+AGG | + | chr8.1:20456140-20456159 | MS.gene057145:CDS | 45.0% | |
GTGACTGGGAAAGGAAGAAT+AGG | + | chr8.1:20456088-20456107 | MS.gene057145:CDS | 45.0% | |
GTTTGAAGAAGGTGGTGACT+GGG | + | chr8.1:20456074-20456093 | MS.gene057145:CDS | 45.0% | |
TACATACCTTGTCCCCAATC+CGG | - | chr8.1:20455734-20455753 | None:intergenic | 45.0% | |
TGGTCACCCTTGCTTATTCT+GGG | + | chr8.1:20454632-20454651 | MS.gene057145:intron | 45.0% | |
TGTTTGAAGAAGGTGGTGAC+TGG | + | chr8.1:20456073-20456092 | MS.gene057145:CDS | 45.0% | |
TTCCAGCAGCAGAAAGGAAA+AGG | - | chr8.1:20455783-20455802 | None:intergenic | 45.0% | |
! | AGTGAGGTGGACATTGACTA+TGG | - | chr8.1:20455185-20455204 | None:intergenic | 45.0% |
! | ATTCATTTCAGCTGGCCTGA+CGG | + | chr8.1:20456647-20456666 | MS.gene057145:intron | 45.0% |
! | CATTCACTGGGCATGTTTTG+AGG | - | chr8.1:20454760-20454779 | None:intergenic | 45.0% |
! | CATTTTCACTCTGGCAGAGA+AGG | + | chr8.1:20455149-20455168 | MS.gene057145:intron | 45.0% |
! | CCATAAGCCATTGGTGACAT+TGG | - | chr8.1:20454720-20454739 | None:intergenic | 45.0% |
! | GACAGCTTGTTTGAAGAAGG+TGG | + | chr8.1:20456066-20456085 | MS.gene057145:intron | 45.0% |
! | GGAAGTGTGGATGCAAATAG+CGG | - | chr8.1:20456689-20456708 | None:intergenic | 45.0% |
! | GGATATGGATCGTGTCCTTT+TGG | + | chr8.1:20453883-20453902 | MS.gene057145:CDS | 45.0% |
! | TACTCCAAACGCTTTTGCCA+TGG | - | chr8.1:20456787-20456806 | None:intergenic | 45.0% |
! | TTCCTTTTCCTTTCTGCTGC+TGG | + | chr8.1:20455778-20455797 | MS.gene057145:intron | 45.0% |
!! | CCAACTTAATTTGCTCCGTC+AGG | - | chr8.1:20456665-20456684 | None:intergenic | 45.0% |
!!! | CCTAGTTGCTGATTCCGTTT+TGG | + | chr8.1:20453862-20453881 | MS.gene057145:CDS | 45.0% |
!!! | GGTGATTTTTCAGGGCACAA+CGG | - | chr8.1:20455081-20455100 | None:intergenic | 45.0% |
!!! | TTTTAGGATTGCTGATGCCG+AGG | + | chr8.1:20455650-20455669 | MS.gene057145:intron | 45.0% |
AACACTGTCCTCTATGCACC+AGG | + | chr8.1:20455810-20455829 | MS.gene057145:intron | 50.0% | |
AAGAAGGTGGTGACTGGGAA+AGG | + | chr8.1:20456079-20456098 | MS.gene057145:CDS | 50.0% | |
AATGTCCACCTCACTTGAGG+AGG | + | chr8.1:20455190-20455209 | MS.gene057145:intron | 50.0% | |
AGGGTTTACGGAGAGAGAAG+AGG | - | chr8.1:20453774-20453793 | None:intergenic | 50.0% | |
AGGTGAGAGTGAAGTTCGTG+AGG | + | chr8.1:20455680-20455699 | MS.gene057145:CDS | 50.0% | |
CAACGAAGAGGGTTCACTGT+AGG | - | chr8.1:20455245-20455264 | None:intergenic | 50.0% | |
CAGAATAAGCAAGGGTGACC+AGG | - | chr8.1:20454633-20454652 | None:intergenic | 50.0% | |
CCAGTGAATGGTAGATGCCA+TGG | + | chr8.1:20454770-20454789 | MS.gene057145:intron | 50.0% | |
CCATGGCATCTACCATTCAC+TGG | - | chr8.1:20454773-20454792 | None:intergenic | 50.0% | |
CGATCACACGAGACAGTTTC+TGG | - | chr8.1:20457074-20457093 | None:intergenic | 50.0% | |
CGCCTTCTCGAAATTTCGAG+TGG | - | chr8.1:20456145-20456164 | None:intergenic | 50.0% | |
CTGGTCACCCTTGCTTATTC+TGG | + | chr8.1:20454631-20454650 | MS.gene057145:intron | 50.0% | |
GAGCATTCTTAGCATCAGGG+CGG | - | chr8.1:20457005-20457024 | None:intergenic | 50.0% | |
GCAGCTTGGTTTCTTTGGCA+TGG | + | chr8.1:20455915-20455934 | MS.gene057145:CDS | 50.0% | |
GCTGATGCCGAGGAAAACTT+AGG | + | chr8.1:20455660-20455679 | MS.gene057145:CDS | 50.0% | |
GGGTTTACGGAGAGAGAAGA+GGG | - | chr8.1:20453773-20453792 | None:intergenic | 50.0% | |
GGTCACCCTTGCTTATTCTG+GGG | + | chr8.1:20454633-20454652 | MS.gene057145:intron | 50.0% | |
GTCAATGTCCACCTCACTTG+AGG | + | chr8.1:20455187-20455206 | MS.gene057145:intron | 50.0% | |
TAGCACGCATGGAGTCCAAA+AGG | - | chr8.1:20453901-20453920 | None:intergenic | 50.0% | |
TATGCACCAGGAGAAAGCCT+TGG | + | chr8.1:20455822-20455841 | MS.gene057145:intron | 50.0% | |
TATGGTGGCCCATAAGCCAT+TGG | - | chr8.1:20454729-20454748 | None:intergenic | 50.0% | |
TCATCTGTCAGCTCAAAGGC+TGG | - | chr8.1:20455102-20455121 | None:intergenic | 50.0% | |
TGAAGTTCGTGAGGCTCACT+TGG | + | chr8.1:20455689-20455708 | MS.gene057145:CDS | 50.0% | |
TGTTGCAGTTGGGCAGAAGA+TGG | + | chr8.1:20455873-20455892 | MS.gene057145:CDS | 50.0% | |
TTCGAGTGGACATGCAGTAG+AGG | - | chr8.1:20456131-20456150 | None:intergenic | 50.0% | |
! | TTTCATCCGGATTGGGGACA+AGG | + | chr8.1:20455725-20455744 | MS.gene057145:CDS | 50.0% |
!! | GAAGCCATGGCAAAAGCGTT+TGG | + | chr8.1:20456780-20456799 | MS.gene057145:CDS | 50.0% |
AGTTGGGCAGAAGATGGACC+TGG | + | chr8.1:20455879-20455898 | MS.gene057145:CDS | 55.0% | |
CATTGCAGCCTCCTCAAGTG+AGG | - | chr8.1:20455201-20455220 | None:intergenic | 55.0% | |
CTGCCCAACTGCAACAGTCT+TGG | - | chr8.1:20455869-20455888 | None:intergenic | 55.0% | |
GAAGGCGGCCACATTGTTCT+TGG | + | chr8.1:20456158-20456177 | MS.gene057145:CDS | 55.0% | |
GATGCTCCAAGGCTTTCTCC+TGG | - | chr8.1:20455831-20455850 | None:intergenic | 55.0% | |
GGCTTTCTCCTGGTGCATAG+AGG | - | chr8.1:20455821-20455840 | None:intergenic | 55.0% | |
TTGTCGGCGAGGACAAGTTG+TGG | - | chr8.1:20453656-20453675 | None:intergenic | 55.0% | |
GGAGGAAAAGCTTGTCGGCG+AGG | - | chr8.1:20453667-20453686 | None:intergenic | 60.0% | |
TGCAGCCTCCTCAAGTGAGG+TGG | - | chr8.1:20455198-20455217 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 20453623 | 20457101 | 20453623 | ID=MS.gene057145 |
chr8.1 | mRNA | 20453623 | 20457101 | 20453623 | ID=MS.gene057145.t1;Parent=MS.gene057145 |
chr8.1 | exon | 20453623 | 20453761 | 20453623 | ID=MS.gene057145.t1.exon1;Parent=MS.gene057145.t1 |
chr8.1 | CDS | 20453623 | 20453761 | 20453623 | ID=cds.MS.gene057145.t1;Parent=MS.gene057145.t1 |
chr8.1 | exon | 20453840 | 20453954 | 20453840 | ID=MS.gene057145.t1.exon2;Parent=MS.gene057145.t1 |
chr8.1 | CDS | 20453840 | 20453954 | 20453840 | ID=cds.MS.gene057145.t1;Parent=MS.gene057145.t1 |
chr8.1 | exon | 20455656 | 20455746 | 20455656 | ID=MS.gene057145.t1.exon3;Parent=MS.gene057145.t1 |
chr8.1 | CDS | 20455656 | 20455746 | 20455656 | ID=cds.MS.gene057145.t1;Parent=MS.gene057145.t1 |
chr8.1 | exon | 20455832 | 20455977 | 20455832 | ID=MS.gene057145.t1.exon4;Parent=MS.gene057145.t1 |
chr8.1 | CDS | 20455832 | 20455977 | 20455832 | ID=cds.MS.gene057145.t1;Parent=MS.gene057145.t1 |
chr8.1 | exon | 20456071 | 20456290 | 20456071 | ID=MS.gene057145.t1.exon5;Parent=MS.gene057145.t1 |
chr8.1 | CDS | 20456071 | 20456290 | 20456071 | ID=cds.MS.gene057145.t1;Parent=MS.gene057145.t1 |
chr8.1 | exon | 20456400 | 20456508 | 20456400 | ID=MS.gene057145.t1.exon6;Parent=MS.gene057145.t1 |
chr8.1 | CDS | 20456400 | 20456508 | 20456400 | ID=cds.MS.gene057145.t1;Parent=MS.gene057145.t1 |
chr8.1 | exon | 20456658 | 20456826 | 20456658 | ID=MS.gene057145.t1.exon7;Parent=MS.gene057145.t1 |
chr8.1 | CDS | 20456658 | 20456826 | 20456658 | ID=cds.MS.gene057145.t1;Parent=MS.gene057145.t1 |
chr8.1 | exon | 20456927 | 20457101 | 20456927 | ID=MS.gene057145.t1.exon8;Parent=MS.gene057145.t1 |
chr8.1 | CDS | 20456927 | 20457101 | 20456927 | ID=cds.MS.gene057145.t1;Parent=MS.gene057145.t1 |
Gene Sequence |
Protein sequence |