AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057145


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057145.t1 MTR_4g104080 99.483 387 2 0 1 387 1 387 0.0 783
MS.gene057145.t1 MTR_8g046560 84.342 281 25 4 86 366 260 521 2.15e-156 451
MS.gene057145.t1 MTR_8g464820 95.673 208 8 1 96 303 160 366 2.77e-141 406
MS.gene057145.t1 MTR_7g076160 24.291 247 180 3 127 371 173 414 5.65e-19 88.6
MS.gene057145.t1 MTR_8g432630 23.481 362 254 11 23 371 65 416 1.54e-18 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057145.t1 AT4G24820 82.687 387 67 0 1 387 1 387 0.0 661
MS.gene057145.t1 AT4G24820 82.687 387 67 0 1 387 1 387 0.0 661
MS.gene057145.t1 AT3G61140 25.100 251 180 4 124 372 169 413 5.59e-18 85.5

Find 76 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGAAGTCTCCTTGCTTAA+TGG 0.172394 8.1:-20457037 None:intergenic
TTTAGCTTTGTCAATGCTTT+TGG 0.209748 8.1:-20455953 None:intergenic
CGATCACACGAGACAGTTTC+TGG 0.218957 8.1:-20457071 None:intergenic
ACATTGCAGCTTGGTTTCTT+TGG 0.250558 8.1:+20455910 MS.gene057145:CDS
CCTAGTTGCTGATTCCGTTT+TGG 0.319218 8.1:+20453862 MS.gene057145:CDS
GTAAAATATAAAGGTGTCAT+AGG 0.319394 8.1:-20456217 None:intergenic
GAAGGCGGCCACATTGTTCT+TGG 0.328664 8.1:+20456158 MS.gene057145:CDS
GGATATGGATCGTGTCCTTT+TGG 0.338072 8.1:+20453883 MS.gene057145:CDS
GCAACTAGGGTTTCGTATAA+AGG 0.352561 8.1:-20453848 None:intergenic
AAAGCATTGACAAAGCTAAA+AGG 0.352604 8.1:+20455956 MS.gene057145:CDS
AAGTCTTTCTTCTCAGCATT+TGG 0.381841 8.1:+20456487 MS.gene057145:CDS
CTTGAACATCTTGTTGTTTG+AGG 0.383548 8.1:-20453685 None:intergenic
CTGCCCAACTGCAACAGTCT+TGG 0.384938 8.1:-20455866 None:intergenic
CAAAACGGTGTAAAATATAA+AGG 0.388515 8.1:-20456226 None:intergenic
AAGGAGACTTCTTGTTGAAC+AGG 0.394711 8.1:+20457046 MS.gene057145:CDS
TGTAAGATTGATAAAGTTGC+AGG 0.397494 8.1:+20456964 MS.gene057145:CDS
TAAAGAGCATTCTTAGCATC+AGG 0.401822 8.1:-20457006 None:intergenic
GAAGCCATGGCAAAAGCGTT+TGG 0.405490 8.1:+20456780 MS.gene057145:CDS
TCAATCACTGTCAAGATCTC+AGG 0.407014 8.1:-20456412 None:intergenic
GTCTCGTGTGATCGATCTTT+AGG 0.409640 8.1:+20457080 MS.gene057145:CDS
CTTGTATTGACAACCATATA+AGG 0.412125 8.1:-20456467 None:intergenic
GCTATTTGCATCCACACTTC+CGG 0.415118 8.1:+20456688 MS.gene057145:CDS
CTCCTTGCTTAATGGTTGCT+TGG 0.422700 8.1:-20457029 None:intergenic
CAGAGTTTCCTTAAAACAAA+AGG 0.442207 8.1:+20456269 MS.gene057145:CDS
CCAACTTAATTTGCTCCGTC+AGG 0.445020 8.1:-20456662 None:intergenic
CCAAAACGGAATCAGCAACT+AGG 0.455755 8.1:-20453862 None:intergenic
GCAGCTTGGTTTCTTTGGCA+TGG 0.461721 8.1:+20455915 MS.gene057145:CDS
TGTTTGAAGAAGGTGGTGAC+TGG 0.465631 8.1:+20456073 MS.gene057145:CDS
TGTTATTATGCTGGTCAAAA+CGG 0.481534 8.1:-20456241 None:intergenic
AAGAAGGTGGTGACTGGGAA+AGG 0.487909 8.1:+20456079 MS.gene057145:CDS
TACATACCTTGTCCCCAATC+CGG 0.495723 8.1:-20455731 None:intergenic
TGAAGTTCGTGAGGCTCACT+TGG 0.496675 8.1:+20455689 MS.gene057145:CDS
TTTGAGGAGGAAAAGCTTGT+CGG 0.496982 8.1:-20453669 None:intergenic
TTTCATCCGGATTGGGGACA+AGG 0.498726 8.1:+20455725 MS.gene057145:CDS
TATGACAGCTTGTTTGAAGA+AGG 0.509351 8.1:+20456063 MS.gene057145:intron
GTATTCTATACATTGCAGCT+TGG 0.510078 8.1:+20455901 MS.gene057145:CDS
TGTTGCAGTTGGGCAGAAGA+TGG 0.511519 8.1:+20455873 MS.gene057145:CDS
TTTGACCAGCATAATAACAT+TGG 0.511922 8.1:+20456245 MS.gene057145:CDS
TTCAATTTCGTCAAGGAACA+TGG 0.512182 8.1:+20453740 MS.gene057145:CDS
TGATCTCTCTCATGTAATAC+CGG 0.514625 8.1:-20456707 None:intergenic
TCTGTCCAATGTTATTATGC+TGG 0.519046 8.1:-20456250 None:intergenic
GTGACTGGGAAAGGAAGAAT+AGG 0.520244 8.1:+20456088 MS.gene057145:CDS
TGTTATCTTGAGATGCTCCA+AGG 0.535770 8.1:-20455839 None:intergenic
AAACCAAGACTGTTGCAGTT+GGG 0.539841 8.1:+20455863 MS.gene057145:CDS
GCTGATGCCGAGGAAAACTT+AGG 0.544982 8.1:+20455660 MS.gene057145:CDS
TAAAATATAAAGGTGTCATA+GGG 0.545376 8.1:-20456216 None:intergenic
GACACGATCCATATCCAAAA+CGG 0.546950 8.1:-20453876 None:intergenic
GAAACCAAGACTGTTGCAGT+TGG 0.547733 8.1:+20455862 MS.gene057145:CDS
CCTGACGGAGCAAATTAAGT+TGG 0.551415 8.1:+20456662 MS.gene057145:CDS
TAGCACGCATGGAGTCCAAA+AGG 0.551715 8.1:-20453898 None:intergenic
ATAGGTAGTAAAGGTTGAGA+TGG 0.554018 8.1:-20456184 None:intergenic
TATGCACCAGGAGAAAGCCT+TGG 0.557453 8.1:+20455822 MS.gene057145:intron
CAAAACGGAATCAGCAACTA+GGG 0.569243 8.1:-20453861 None:intergenic
GAGTGTGACAATTGAAGCCA+TGG 0.570854 8.1:+20456767 MS.gene057145:CDS
ATCGCGTCAATGGCAAATGA+AGG 0.573429 8.1:+20453614 None:intergenic
CTCATGTAATACCGGAAGTG+TGG 0.574056 8.1:-20456699 None:intergenic
ATTCATTTCAGCTGGCCTGA+CGG 0.578789 8.1:+20456647 MS.gene057145:intron
AATAGGCTGAAAGTGTATGA+AGG 0.580095 8.1:+20456105 MS.gene057145:CDS
GAACATCTTGTTGTTTGAGG+AGG 0.589500 8.1:-20453682 None:intergenic
TACCAAGCAACCATTAAGCA+AGG 0.592283 8.1:+20457027 MS.gene057145:CDS
GTTTGAAGAAGGTGGTGACT+GGG 0.592873 8.1:+20456074 MS.gene057145:CDS
TTCGAGTGGACATGCAGTAG+AGG 0.594533 8.1:-20456128 None:intergenic
GCTGCAATGTATAGAATACC+AGG 0.602890 8.1:-20455897 None:intergenic
GGAGGAAAAGCTTGTCGGCG+AGG 0.605693 8.1:-20453664 None:intergenic
CACTCGAAATTTCGAGAAGG+CGG 0.611108 8.1:+20456143 MS.gene057145:CDS
CGCCTTCTCGAAATTTCGAG+TGG 0.620270 8.1:-20456142 None:intergenic
TTGTCGGCGAGGACAAGTTG+TGG 0.627071 8.1:-20453653 None:intergenic
AAAGAGCATTCTTAGCATCA+GGG 0.643450 8.1:-20457005 None:intergenic
AAAAGCGTTTGGAGTATCTG+TGG 0.655763 8.1:+20456791 MS.gene057145:CDS
GGAAGTGTGGATGCAAATAG+CGG 0.661860 8.1:-20456686 None:intergenic
AGGTGAGAGTGAAGTTCGTG+AGG 0.662611 8.1:+20455680 MS.gene057145:CDS
GTCCACTCGAAATTTCGAGA+AGG 0.663292 8.1:+20456140 MS.gene057145:CDS
AGTTGGGCAGAAGATGGACC+TGG 0.674047 8.1:+20455879 MS.gene057145:CDS
GACAGCTTGTTTGAAGAAGG+TGG 0.675197 8.1:+20456066 MS.gene057145:intron
GAGCATTCTTAGCATCAGGG+CGG 0.753729 8.1:-20457002 None:intergenic
GATGGAATCCAAGAACAATG+TGG 0.760047 8.1:-20456166 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAGAAAATTTATTTAATA+GGG + chr8.1:20454031-20454050 MS.gene057145:intron 10.0%
!! TTGAAGAAAATTTATTTAAT+AGG + chr8.1:20454030-20454049 MS.gene057145:intron 10.0%
!! TCAATAAATACATATCTTAA+TGG + chr8.1:20454976-20454995 MS.gene057145:intron 15.0%
!! TGAAAAACAAAAGAAAATTA+GGG - chr8.1:20453817-20453836 None:intergenic 15.0%
!! TTATATAGTGAAGAAAATTA+GGG - chr8.1:20453793-20453812 None:intergenic 15.0%
!! TTTATATAGTGAAGAAAATT+AGG - chr8.1:20453794-20453813 None:intergenic 15.0%
!!! TATAATTTTCTGTTAAGAAT+GGG + chr8.1:20456020-20456039 MS.gene057145:intron 15.0%
!! AAAATCCAAAATTCACAATT+GGG - chr8.1:20453993-20454012 None:intergenic 20.0%
!! ATATATCCTAGAAAGATTAA+TGG - chr8.1:20455391-20455410 None:intergenic 20.0%
!! ATTACATATATTTGTTTCCA+GGG + chr8.1:20456906-20456925 MS.gene057145:intron 20.0%
!! CAATATGTAAAAATAAACTC+TGG - chr8.1:20454607-20454626 None:intergenic 20.0%
!! GTGAAAAACAAAAGAAAATT+AGG - chr8.1:20453818-20453837 None:intergenic 20.0%
!! TATATCCTAGAAAGATTAAT+GGG - chr8.1:20455390-20455409 None:intergenic 20.0%
!! TTAACAGAAAATTATAGCAA+AGG - chr8.1:20456016-20456035 None:intergenic 20.0%
!! TTGAATTGTACTAATGTATT+TGG + chr8.1:20454103-20454122 MS.gene057145:intron 20.0%
!!! ACAACTTATTCATCATTTTT+AGG - chr8.1:20454857-20454876 None:intergenic 20.0%
!!! CTATAATTTTCTGTTAAGAA+TGG + chr8.1:20456019-20456038 MS.gene057145:intron 20.0%
!!! TAAAATATAAAGGTGTCATA+GGG - chr8.1:20456219-20456238 None:intergenic 20.0%
! AAAAAGTTCATAGGTAGTAA+AGG - chr8.1:20456196-20456215 None:intergenic 25.0%
! AAATCCAAAATTCACAATTG+GGG - chr8.1:20453992-20454011 None:intergenic 25.0%
! AATTACCCATTAATCTTTCT+AGG + chr8.1:20455382-20455401 MS.gene057145:intron 25.0%
! AGAAAAGATAAATGGTGTAA+AGG - chr8.1:20456320-20456339 None:intergenic 25.0%
! CAAAACGGTGTAAAATATAA+AGG - chr8.1:20456229-20456248 None:intergenic 25.0%
! CAAAATCCAAAATTCACAAT+TGG - chr8.1:20453994-20454013 None:intergenic 25.0%
! CATTACATATATTTGTTTCC+AGG + chr8.1:20456905-20456924 MS.gene057145:intron 25.0%
! CGGTTAAAAGAAAAGATAAA+TGG - chr8.1:20456328-20456347 None:intergenic 25.0%
! TAAAACAACCAAGAAAGAAA+AGG + chr8.1:20454952-20454971 MS.gene057145:intron 25.0%
! TGATTAGATTACAATGTTGT+GGG + chr8.1:20456874-20456893 MS.gene057145:intron 25.0%
! TTGATTAGATTACAATGTTG+TGG + chr8.1:20456873-20456892 MS.gene057145:intron 25.0%
!! AAATAATAGTTTGTATCTCG+AGG - chr8.1:20455575-20455594 None:intergenic 25.0%
!! AATTCTAGAGATTCTTGAAT+AGG - chr8.1:20454370-20454389 None:intergenic 25.0%
!! ATTCTAGAGATTCTTGAATA+GGG - chr8.1:20454369-20454388 None:intergenic 25.0%
!! TCATATGAATGTCTCATTTT+AGG + chr8.1:20455634-20455653 MS.gene057145:intron 25.0%
!! TCTGTTCTTAAATGTTTTAC+TGG + chr8.1:20454136-20454155 MS.gene057145:intron 25.0%
!! TTATTGATCCTTTTCTTTCT+TGG - chr8.1:20454963-20454982 None:intergenic 25.0%
!!! ATTTTGAAATTCATTTCAGC+TGG + chr8.1:20456639-20456658 MS.gene057145:intron 25.0%
!!! CAAAATCCTTATTTTTCATC+CGG + chr8.1:20455712-20455731 MS.gene057145:CDS 25.0%
!!! GTAAAATATAAAGGTGTCAT+AGG - chr8.1:20456220-20456239 None:intergenic 25.0%
!!! TAGAAGTACCTTTTGTTTTA+AGG - chr8.1:20456280-20456299 None:intergenic 25.0%
!!! TATTTTTACATATTGTGACC+TGG + chr8.1:20454612-20454631 MS.gene057145:intron 25.0%
AAACGAAAAACCAAGTGATT+TGG - chr8.1:20456845-20456864 None:intergenic 30.0%
AAATCGACATATGATCTGAA+TGG - chr8.1:20454458-20454477 None:intergenic 30.0%
AACGAAAAACCAAGTGATTT+GGG - chr8.1:20456844-20456863 None:intergenic 30.0%
AAGTACAAAACCTAGAATAC+TGG + chr8.1:20455483-20455502 MS.gene057145:intron 30.0%
AGTACAAAACCTAGAATACT+GGG + chr8.1:20455484-20455503 MS.gene057145:intron 30.0%
AGTATAATGAGTCTTTGTTG+GGG + chr8.1:20454500-20454519 MS.gene057145:intron 30.0%
CAGAGTTTCCTTAAAACAAA+AGG + chr8.1:20456269-20456288 MS.gene057145:CDS 30.0%
CTTGTAAGATTCCAAAAACT+GGG - chr8.1:20456748-20456767 None:intergenic 30.0%
GAACATAGAAGCAAAAAGAT+AGG - chr8.1:20456606-20456625 None:intergenic 30.0%
GAGTATAATGAGTCTTTGTT+GGG + chr8.1:20454499-20454518 MS.gene057145:intron 30.0%
GTGAAGAAAATTAGGGTTTA+CGG - chr8.1:20453786-20453805 None:intergenic 30.0%
TCTTGTAAGATTCCAAAAAC+TGG - chr8.1:20456749-20456768 None:intergenic 30.0%
TGAGTATAATGAGTCTTTGT+TGG + chr8.1:20454498-20454517 MS.gene057145:intron 30.0%
TGTAAGATTGATAAAGTTGC+AGG + chr8.1:20456964-20456983 MS.gene057145:CDS 30.0%
TGTTATTATGCTGGTCAAAA+CGG - chr8.1:20456244-20456263 None:intergenic 30.0%
TTTACATGATGCTACATCAT+TGG - chr8.1:20455004-20455023 None:intergenic 30.0%
TTTGACCAGCATAATAACAT+TGG + chr8.1:20456245-20456264 MS.gene057145:CDS 30.0%
! ACTGTTTCTTTCCTTGATTA+TGG - chr8.1:20454802-20454821 None:intergenic 30.0%
! AGATGTTTTCAATTTCGTCA+AGG + chr8.1:20453733-20453752 MS.gene057145:CDS 30.0%
! ATCAAGGAAAGAAACAGTTT+TGG + chr8.1:20454804-20454823 MS.gene057145:intron 30.0%
! CAAAACTTTCATTTTCACTC+TGG + chr8.1:20455140-20455159 MS.gene057145:intron 30.0%
! CAGAGTGAAAATGAAAGTTT+TGG - chr8.1:20455142-20455161 None:intergenic 30.0%
! CTTGTATTGACAACCATATA+AGG - chr8.1:20456470-20456489 None:intergenic 30.0%
! TAACTAGACTAATTTGCATC+AGG + chr8.1:20456378-20456397 MS.gene057145:intron 30.0%
! TCCACATCTTAAAGAGTTTT+TGG + chr8.1:20456441-20456460 MS.gene057145:CDS 30.0%
! TTAACCCCAATTGTGAATTT+TGG + chr8.1:20453985-20454004 MS.gene057145:intron 30.0%
! TTTTGGATTTTGAATGCACT+AGG + chr8.1:20454002-20454021 MS.gene057145:intron 30.0%
!! AAAGCATTGACAAAGCTAAA+AGG + chr8.1:20455956-20455975 MS.gene057145:CDS 30.0%
!! CTTAGTTCTATATGGATGTA+TGG - chr8.1:20454901-20454920 None:intergenic 30.0%
!! TAGAATCACTTTTGAAGATG+TGG - chr8.1:20455296-20455315 None:intergenic 30.0%
!! TCCAAAAACTCTTTAAGATG+TGG - chr8.1:20456445-20456464 None:intergenic 30.0%
!! TGTCATTTATTCCCAGTTTT+TGG + chr8.1:20456734-20456753 MS.gene057145:CDS 30.0%
!!! TCTTTTGTTTTTCACAGACA+TGG + chr8.1:20453823-20453842 MS.gene057145:intron 30.0%
!!! TTTAGCTTTGTCAATGCTTT+TGG - chr8.1:20455956-20455975 None:intergenic 30.0%
AAAAACCCCAGAATAAGCAA+GGG - chr8.1:20454641-20454660 None:intergenic 35.0%
AAATAGCAAAGCAACGAAGA+GGG - chr8.1:20455256-20455275 None:intergenic 35.0%
AACTTCAATCAAACTGCTAG+AGG - chr8.1:20454403-20454422 None:intergenic 35.0%
AAGTCTTTCTTCTCAGCATT+TGG + chr8.1:20456487-20456506 MS.gene057145:CDS 35.0%
ACTTCAATCAAACTGCTAGA+GGG - chr8.1:20454402-20454421 None:intergenic 35.0%
AGAATAGAAAATGCAAAGGC+TGG + chr8.1:20455507-20455526 MS.gene057145:intron 35.0%
ATAGGTAGTAAAGGTTGAGA+TGG - chr8.1:20456187-20456206 None:intergenic 35.0%
CATGGAAATCACCATAATCA+AGG + chr8.1:20454788-20454807 MS.gene057145:intron 35.0%
CCATATAGAACTAAGCTAGT+TGG + chr8.1:20454906-20454925 MS.gene057145:intron 35.0%
CTTGATTATGGTGATTTCCA+TGG - chr8.1:20454790-20454809 None:intergenic 35.0%
GCAGTTTGATTGAAGTTGAA+CGG + chr8.1:20454406-20454425 MS.gene057145:intron 35.0%
GCCAAGAAATAACAGAACAA+CGG - chr8.1:20456348-20456367 None:intergenic 35.0%
GTATAATGAGTCTTTGTTGG+GGG + chr8.1:20454501-20454520 MS.gene057145:intron 35.0%
GTATTCTATACATTGCAGCT+TGG + chr8.1:20455901-20455920 MS.gene057145:CDS 35.0%
GTCATAGGGAAAAAGTTCAT+AGG - chr8.1:20456205-20456224 None:intergenic 35.0%
TATAGAACTAAGCTAGTTGG+AGG + chr8.1:20454909-20454928 MS.gene057145:intron 35.0%
TATATACCCAATGTCACCAA+TGG + chr8.1:20454710-20454729 MS.gene057145:intron 35.0%
TATGAGCTATCGTTAGTACA+AGG - chr8.1:20455619-20455638 None:intergenic 35.0%
TCCAAACATACTTCTTTAGC+AGG - chr8.1:20454328-20454347 None:intergenic 35.0%
TCTGTCCAATGTTATTATGC+TGG - chr8.1:20456253-20456272 None:intergenic 35.0%
TCTTCAAACAAGCTGTCATA+TGG - chr8.1:20456063-20456082 None:intergenic 35.0%
TGATCTCTCTCATGTAATAC+CGG - chr8.1:20456710-20456729 None:intergenic 35.0%
TGCAATTACTATGACACATC+TGG - chr8.1:20455534-20455553 None:intergenic 35.0%
TGGGAGAATAGAAAATGCAA+AGG + chr8.1:20455503-20455522 MS.gene057145:intron 35.0%
TTAATAATAACCGCAGAGAC+AGG - chr8.1:20455364-20455383 None:intergenic 35.0%
TTAGATTACAATGTTGTGGG+AGG + chr8.1:20456877-20456896 MS.gene057145:intron 35.0%
TTCAATTTCGTCAAGGAACA+TGG + chr8.1:20453740-20453759 MS.gene057145:CDS 35.0%
TTCTATTCTCCCAGTATTCT+AGG - chr8.1:20455496-20455515 None:intergenic 35.0%
! AATAGGCTGAAAGTGTATGA+AGG + chr8.1:20456105-20456124 MS.gene057145:CDS 35.0%
! ATTTTCATCTGTCAGCTCAA+AGG - chr8.1:20455106-20455125 None:intergenic 35.0%
! TATGACAGCTTGTTTGAAGA+AGG + chr8.1:20456063-20456082 MS.gene057145:intron 35.0%
! TCCTGCTAAAGAAGTATGTT+TGG + chr8.1:20454324-20454343 MS.gene057145:intron 35.0%
!! AAAGAGCATTCTTAGCATCA+GGG - chr8.1:20457008-20457027 None:intergenic 35.0%
!! ACCGTTGTTCTGTTATTTCT+TGG + chr8.1:20456344-20456363 MS.gene057145:intron 35.0%
!! ATCATCAATTTTAGCACGCA+TGG - chr8.1:20453912-20453931 None:intergenic 35.0%
!! CCAACTAGCTTAGTTCTATA+TGG - chr8.1:20454909-20454928 None:intergenic 35.0%
!! CTTATTTTTCATCCGGATTG+GGG + chr8.1:20455719-20455738 MS.gene057145:CDS 35.0%
!! CTTGAACATCTTGTTGTTTG+AGG - chr8.1:20453688-20453707 None:intergenic 35.0%
!! GAGTTTTTGGACTCCTTATA+TGG + chr8.1:20456454-20456473 MS.gene057145:CDS 35.0%
!! TAAAGAGCATTCTTAGCATC+AGG - chr8.1:20457009-20457028 None:intergenic 35.0%
!! TATCACGTTTTATTGCAGCT+GGG + chr8.1:20456932-20456951 MS.gene057145:CDS 35.0%
!!! CCTTATTTTTCATCCGGATT+GGG + chr8.1:20455718-20455737 MS.gene057145:CDS 35.0%
!!! TCCTTATTTTTCATCCGGAT+TGG + chr8.1:20455717-20455736 MS.gene057145:CDS 35.0%
!!! TGTTTTGAGGCTAGCTATTA+TGG - chr8.1:20454747-20454766 None:intergenic 35.0%
AAACCAAGACTGTTGCAGTT+GGG + chr8.1:20455863-20455882 MS.gene057145:CDS 40.0%
AAGGAGACTTCTTGTTGAAC+AGG + chr8.1:20457046-20457065 MS.gene057145:CDS 40.0%
AATAAAACGTGATAGCTCCC+TGG - chr8.1:20456926-20456945 None:intergenic 40.0%
ACATTGCAGCTTGGTTTCTT+TGG + chr8.1:20455910-20455929 MS.gene057145:CDS 40.0%
ATTCTTGAATAGGGAACACG+TGG - chr8.1:20454360-20454379 None:intergenic 40.0%
CAAAACGGAATCAGCAACTA+GGG - chr8.1:20453864-20453883 None:intergenic 40.0%
CAAATAGCAAAGCAACGAAG+AGG - chr8.1:20455257-20455276 None:intergenic 40.0%
CAAGAAGTCTCCTTGCTTAA+TGG - chr8.1:20457040-20457059 None:intergenic 40.0%
CAATGTCACCAATGGCTTAT+GGG + chr8.1:20454718-20454737 MS.gene057145:intron 40.0%
CAGGCTAAATTTCATCCATC+AGG - chr8.1:20455345-20455364 None:intergenic 40.0%
CCATCAGGAATTCTAAGTTC+AGG - chr8.1:20455330-20455349 None:intergenic 40.0%
CCCAATCCGGATGAAAAATA+AGG - chr8.1:20455721-20455740 None:intergenic 40.0%
CCTGAACTTAGAATTCCTGA+TGG + chr8.1:20455327-20455346 MS.gene057145:intron 40.0%
CTTCAATCAAACTGCTAGAG+GGG - chr8.1:20454401-20454420 None:intergenic 40.0%
GAAAAACCCCAGAATAAGCA+AGG - chr8.1:20454642-20454661 None:intergenic 40.0%
GACACGATCCATATCCAAAA+CGG - chr8.1:20453879-20453898 None:intergenic 40.0%
GATGGAATCCAAGAACAATG+TGG - chr8.1:20456169-20456188 None:intergenic 40.0%
GCAACTAGGGTTTCGTATAA+AGG - chr8.1:20453851-20453870 None:intergenic 40.0%
GCTGCAATGTATAGAATACC+AGG - chr8.1:20455900-20455919 None:intergenic 40.0%
TACCAAGCAACCATTAAGCA+AGG + chr8.1:20457027-20457046 MS.gene057145:CDS 40.0%
TCAATCACTGTCAAGATCTC+AGG - chr8.1:20456415-20456434 None:intergenic 40.0%
TGAAATTTAGCCTGTCTCTG+CGG + chr8.1:20455351-20455370 MS.gene057145:intron 40.0%
TGAATGCATCCCAAATCACT+TGG + chr8.1:20456832-20456851 MS.gene057145:intron 40.0%
TGTTATCTTGAGATGCTCCA+AGG - chr8.1:20455842-20455861 None:intergenic 40.0%
TTCAATCAAACTGCTAGAGG+GGG - chr8.1:20454400-20454419 None:intergenic 40.0%
TTTGAGGAGGAAAAGCTTGT+CGG - chr8.1:20453672-20453691 None:intergenic 40.0%
! ACTCTCACCTAAGTTTTCCT+CGG - chr8.1:20455670-20455689 None:intergenic 40.0%
! CAAAGGCTGGTGATTTTTCA+GGG - chr8.1:20455089-20455108 None:intergenic 40.0%
! CATAAGCCATTGGTGACATT+GGG - chr8.1:20454719-20454738 None:intergenic 40.0%
! GACTAATTTGCATCAGGTAG+TGG + chr8.1:20456384-20456403 MS.gene057145:intron 40.0%
! TCAAAGGCTGGTGATTTTTC+AGG - chr8.1:20455090-20455109 None:intergenic 40.0%
! TTTGAGGCTAGCTATTATGG+TGG - chr8.1:20454744-20454763 None:intergenic 40.0%
!! AAAAGCGTTTGGAGTATCTG+TGG + chr8.1:20456791-20456810 MS.gene057145:CDS 40.0%
!! CTATCACGTTTTATTGCAGC+TGG + chr8.1:20456931-20456950 MS.gene057145:CDS 40.0%
!! CTCTTCGTTGCTTTGCTATT+TGG + chr8.1:20455255-20455274 MS.gene057145:intron 40.0%
!! GAACATCTTGTTGTTTGAGG+AGG - chr8.1:20453685-20453704 None:intergenic 40.0%
!!! TGCTGATTCCGTTTTGGATA+TGG + chr8.1:20453868-20453887 MS.gene057145:CDS 40.0%
ACTGTAGGACATCTTCAGTC+TGG - chr8.1:20455230-20455249 None:intergenic 45.0%
ACTTGATTCCAGCAGCAGAA+AGG - chr8.1:20455789-20455808 None:intergenic 45.0%
CACTCGAAATTTCGAGAAGG+CGG + chr8.1:20456143-20456162 MS.gene057145:CDS 45.0%
CATGGCATCTACCATTCACT+GGG - chr8.1:20454772-20454791 None:intergenic 45.0%
CCAAAACGGAATCAGCAACT+AGG - chr8.1:20453865-20453884 None:intergenic 45.0%
CCAATGTCACCAATGGCTTA+TGG + chr8.1:20454717-20454736 MS.gene057145:intron 45.0%
CCTGACGGAGCAAATTAAGT+TGG + chr8.1:20456662-20456681 MS.gene057145:CDS 45.0%
CTCAAAACATGCCCAGTGAA+TGG + chr8.1:20454758-20454777 MS.gene057145:intron 45.0%
CTCATGTAATACCGGAAGTG+TGG - chr8.1:20456702-20456721 None:intergenic 45.0%
CTCCTTGCTTAATGGTTGCT+TGG - chr8.1:20457032-20457051 None:intergenic 45.0%
GAAACCAAGACTGTTGCAGT+TGG + chr8.1:20455862-20455881 MS.gene057145:CDS 45.0%
GAGTGTGACAATTGAAGCCA+TGG + chr8.1:20456767-20456786 MS.gene057145:CDS 45.0%
GCTATTTGCATCCACACTTC+CGG + chr8.1:20456688-20456707 MS.gene057145:CDS 45.0%
GTCCACTCGAAATTTCGAGA+AGG + chr8.1:20456140-20456159 MS.gene057145:CDS 45.0%
GTGACTGGGAAAGGAAGAAT+AGG + chr8.1:20456088-20456107 MS.gene057145:CDS 45.0%
GTTTGAAGAAGGTGGTGACT+GGG + chr8.1:20456074-20456093 MS.gene057145:CDS 45.0%
TACATACCTTGTCCCCAATC+CGG - chr8.1:20455734-20455753 None:intergenic 45.0%
TGGTCACCCTTGCTTATTCT+GGG + chr8.1:20454632-20454651 MS.gene057145:intron 45.0%
TGTTTGAAGAAGGTGGTGAC+TGG + chr8.1:20456073-20456092 MS.gene057145:CDS 45.0%
TTCCAGCAGCAGAAAGGAAA+AGG - chr8.1:20455783-20455802 None:intergenic 45.0%
! AGTGAGGTGGACATTGACTA+TGG - chr8.1:20455185-20455204 None:intergenic 45.0%
! ATTCATTTCAGCTGGCCTGA+CGG + chr8.1:20456647-20456666 MS.gene057145:intron 45.0%
! CATTCACTGGGCATGTTTTG+AGG - chr8.1:20454760-20454779 None:intergenic 45.0%
! CATTTTCACTCTGGCAGAGA+AGG + chr8.1:20455149-20455168 MS.gene057145:intron 45.0%
! CCATAAGCCATTGGTGACAT+TGG - chr8.1:20454720-20454739 None:intergenic 45.0%
! GACAGCTTGTTTGAAGAAGG+TGG + chr8.1:20456066-20456085 MS.gene057145:intron 45.0%
! GGAAGTGTGGATGCAAATAG+CGG - chr8.1:20456689-20456708 None:intergenic 45.0%
! GGATATGGATCGTGTCCTTT+TGG + chr8.1:20453883-20453902 MS.gene057145:CDS 45.0%
! TACTCCAAACGCTTTTGCCA+TGG - chr8.1:20456787-20456806 None:intergenic 45.0%
! TTCCTTTTCCTTTCTGCTGC+TGG + chr8.1:20455778-20455797 MS.gene057145:intron 45.0%
!! CCAACTTAATTTGCTCCGTC+AGG - chr8.1:20456665-20456684 None:intergenic 45.0%
!!! CCTAGTTGCTGATTCCGTTT+TGG + chr8.1:20453862-20453881 MS.gene057145:CDS 45.0%
!!! GGTGATTTTTCAGGGCACAA+CGG - chr8.1:20455081-20455100 None:intergenic 45.0%
!!! TTTTAGGATTGCTGATGCCG+AGG + chr8.1:20455650-20455669 MS.gene057145:intron 45.0%
AACACTGTCCTCTATGCACC+AGG + chr8.1:20455810-20455829 MS.gene057145:intron 50.0%
AAGAAGGTGGTGACTGGGAA+AGG + chr8.1:20456079-20456098 MS.gene057145:CDS 50.0%
AATGTCCACCTCACTTGAGG+AGG + chr8.1:20455190-20455209 MS.gene057145:intron 50.0%
AGGGTTTACGGAGAGAGAAG+AGG - chr8.1:20453774-20453793 None:intergenic 50.0%
AGGTGAGAGTGAAGTTCGTG+AGG + chr8.1:20455680-20455699 MS.gene057145:CDS 50.0%
CAACGAAGAGGGTTCACTGT+AGG - chr8.1:20455245-20455264 None:intergenic 50.0%
CAGAATAAGCAAGGGTGACC+AGG - chr8.1:20454633-20454652 None:intergenic 50.0%
CCAGTGAATGGTAGATGCCA+TGG + chr8.1:20454770-20454789 MS.gene057145:intron 50.0%
CCATGGCATCTACCATTCAC+TGG - chr8.1:20454773-20454792 None:intergenic 50.0%
CGATCACACGAGACAGTTTC+TGG - chr8.1:20457074-20457093 None:intergenic 50.0%
CGCCTTCTCGAAATTTCGAG+TGG - chr8.1:20456145-20456164 None:intergenic 50.0%
CTGGTCACCCTTGCTTATTC+TGG + chr8.1:20454631-20454650 MS.gene057145:intron 50.0%
GAGCATTCTTAGCATCAGGG+CGG - chr8.1:20457005-20457024 None:intergenic 50.0%
GCAGCTTGGTTTCTTTGGCA+TGG + chr8.1:20455915-20455934 MS.gene057145:CDS 50.0%
GCTGATGCCGAGGAAAACTT+AGG + chr8.1:20455660-20455679 MS.gene057145:CDS 50.0%
GGGTTTACGGAGAGAGAAGA+GGG - chr8.1:20453773-20453792 None:intergenic 50.0%
GGTCACCCTTGCTTATTCTG+GGG + chr8.1:20454633-20454652 MS.gene057145:intron 50.0%
GTCAATGTCCACCTCACTTG+AGG + chr8.1:20455187-20455206 MS.gene057145:intron 50.0%
TAGCACGCATGGAGTCCAAA+AGG - chr8.1:20453901-20453920 None:intergenic 50.0%
TATGCACCAGGAGAAAGCCT+TGG + chr8.1:20455822-20455841 MS.gene057145:intron 50.0%
TATGGTGGCCCATAAGCCAT+TGG - chr8.1:20454729-20454748 None:intergenic 50.0%
TCATCTGTCAGCTCAAAGGC+TGG - chr8.1:20455102-20455121 None:intergenic 50.0%
TGAAGTTCGTGAGGCTCACT+TGG + chr8.1:20455689-20455708 MS.gene057145:CDS 50.0%
TGTTGCAGTTGGGCAGAAGA+TGG + chr8.1:20455873-20455892 MS.gene057145:CDS 50.0%
TTCGAGTGGACATGCAGTAG+AGG - chr8.1:20456131-20456150 None:intergenic 50.0%
! TTTCATCCGGATTGGGGACA+AGG + chr8.1:20455725-20455744 MS.gene057145:CDS 50.0%
!! GAAGCCATGGCAAAAGCGTT+TGG + chr8.1:20456780-20456799 MS.gene057145:CDS 50.0%
AGTTGGGCAGAAGATGGACC+TGG + chr8.1:20455879-20455898 MS.gene057145:CDS 55.0%
CATTGCAGCCTCCTCAAGTG+AGG - chr8.1:20455201-20455220 None:intergenic 55.0%
CTGCCCAACTGCAACAGTCT+TGG - chr8.1:20455869-20455888 None:intergenic 55.0%
GAAGGCGGCCACATTGTTCT+TGG + chr8.1:20456158-20456177 MS.gene057145:CDS 55.0%
GATGCTCCAAGGCTTTCTCC+TGG - chr8.1:20455831-20455850 None:intergenic 55.0%
GGCTTTCTCCTGGTGCATAG+AGG - chr8.1:20455821-20455840 None:intergenic 55.0%
TTGTCGGCGAGGACAAGTTG+TGG - chr8.1:20453656-20453675 None:intergenic 55.0%
GGAGGAAAAGCTTGTCGGCG+AGG - chr8.1:20453667-20453686 None:intergenic 60.0%
TGCAGCCTCCTCAAGTGAGG+TGG - chr8.1:20455198-20455217 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 20453623 20457101 20453623 ID=MS.gene057145
chr8.1 mRNA 20453623 20457101 20453623 ID=MS.gene057145.t1;Parent=MS.gene057145
chr8.1 exon 20453623 20453761 20453623 ID=MS.gene057145.t1.exon1;Parent=MS.gene057145.t1
chr8.1 CDS 20453623 20453761 20453623 ID=cds.MS.gene057145.t1;Parent=MS.gene057145.t1
chr8.1 exon 20453840 20453954 20453840 ID=MS.gene057145.t1.exon2;Parent=MS.gene057145.t1
chr8.1 CDS 20453840 20453954 20453840 ID=cds.MS.gene057145.t1;Parent=MS.gene057145.t1
chr8.1 exon 20455656 20455746 20455656 ID=MS.gene057145.t1.exon3;Parent=MS.gene057145.t1
chr8.1 CDS 20455656 20455746 20455656 ID=cds.MS.gene057145.t1;Parent=MS.gene057145.t1
chr8.1 exon 20455832 20455977 20455832 ID=MS.gene057145.t1.exon4;Parent=MS.gene057145.t1
chr8.1 CDS 20455832 20455977 20455832 ID=cds.MS.gene057145.t1;Parent=MS.gene057145.t1
chr8.1 exon 20456071 20456290 20456071 ID=MS.gene057145.t1.exon5;Parent=MS.gene057145.t1
chr8.1 CDS 20456071 20456290 20456071 ID=cds.MS.gene057145.t1;Parent=MS.gene057145.t1
chr8.1 exon 20456400 20456508 20456400 ID=MS.gene057145.t1.exon6;Parent=MS.gene057145.t1
chr8.1 CDS 20456400 20456508 20456400 ID=cds.MS.gene057145.t1;Parent=MS.gene057145.t1
chr8.1 exon 20456658 20456826 20456658 ID=MS.gene057145.t1.exon7;Parent=MS.gene057145.t1
chr8.1 CDS 20456658 20456826 20456658 ID=cds.MS.gene057145.t1;Parent=MS.gene057145.t1
chr8.1 exon 20456927 20457101 20456927 ID=MS.gene057145.t1.exon8;Parent=MS.gene057145.t1
chr8.1 CDS 20456927 20457101 20456927 ID=cds.MS.gene057145.t1;Parent=MS.gene057145.t1
Gene Sequence

>MS.gene057145

ATGGCAAATGAAGGTGAAGAAGTTCAGCAGCCACAACTTGTCCTCGCCGACAAGCTTTTCCTCCTCAAACAACAAGATGTTCAAGACATCGACAAAGTTCGATTCAAAGAAGATGTTTTCAATTTCGTCAAGGAACATGGTATCTATCCCTCTTCTCTCTCCGTAAACCCTAATTTTCTTCACTATATAAACCCTAATTTTCTTTTGTTTTTCACAGACATGGTTCCTTTATACGAAACCCTAGTTGCTGATTCCGTTTTGGATATGGATCGTGTCCTTTTGGACTCCATGCGTGCTAAAATTGATGATGAGCTCAAGAAGCTTGATGAAAAGTTAGTTTGTTTCTCTCTCTCTTACTTCGTTTAACCCCAATTGTGAATTTTGGATTTTGAATGCACTAGGTTAAATTGAAGAAAATTTATTTAATAGGGTTTTGATGTTTATTTTTTCAATTAACTATATTGTATGAGATTTGCTTATTTGAATTGTACTAATGTATTTGGTAAGTGTTTTTCTGTTCTTAAATGTTTTACTGGTTTTTGATCTTCAATTATTGTCAATTTTATGATGATTGCTGTTTGTTAACACTCATTATCGCAACATCTTCATCGCTTTATTTACTGAGATTGTAAACTGCGTTGATTAGTTGATTAGTTTATCTTGATGTACAAAACTTACTAAAACAAAGTAAGATGCTGAATTCCTGCTAAAGAAGTATGTTTGGAGTTGTGAATCCACGTGTTCCCTATTCAAGAATCTCTAGAATTAAGTTTTCCCCCTCTAGCAGTTTGATTGAAGTTGAACGGAATATTATCTGTGAAAACAATTTATGCCATTCAGATCATATGTCGATTTTAATATGAAAGTTGACTAGTTGAGTATAATGAGTCTTTGTTGGGGGAAAAAGATGTGTTATTATGTGTATACATTTGTATCATTAAACTATATATAGAGTGCTTTTAAATCAAATTAGTGTTTCTACCAGAGTTTATTTTTACATATTGTGACCTGGTCACCCTTGCTTATTCTGGGGTTTTTCATTAATATTATCATTATAATTGTAGTTGTAGTAGTATTAAGTTCATGCTATATACCCAATGTCACCAATGGCTTATGGGCCACCATAATAGCTAGCCTCAAAACATGCCCAGTGAATGGTAGATGCCATGGAAATCACCATAATCAAGGAAAGAAACAGTTTTGGATAATAAATGTAAATAGTATACATATACCTAAAAATGATGAATAAGTTGTATTTTATATAGTGAGAAGTCACCATACATCCATATAGAACTAAGCTAGTTGGAGGAATATTACTTAATAGACAATTAAAACAACCAAGAAAGAAAAGGATCAATAAATACATATCTTAATGGTTCCAATGATGTAGCATCATGTAAATTGTCATTCTGCAATCATTTACAGTGTTACTTGCAATAAGATTAAGCTCAATGACCGTTGTGCCCTGAAAAATCACCAGCCTTTGAGCTGACAGATGAAAATGAGATAATGTTTACCAAAACTTTCATTTTCACTCTGGCAGAGAAGGCACAGTAGCACCATAGTCAATGTCCACCTCACTTGAGGAGGCTGCAATGATGCTACCAGACTGAAGATGTCCTACAGTGAACCCTCTTCGTTGCTTTGCTATTTGGCTGTGACTGTGAGAGCCACATCTTCAAAAGTGATTCTATCTACTTGTCGCCTGAACTTAGAATTCCTGATGGATGAAATTTAGCCTGTCTCTGCGGTTATTATTAATTACCCATTAATCTTTCTAGGATATATTGCTCTTCTATTTCAAGATAGAAAAAGAAATATTAGTAAGTTTCAGTGAAAAGATTACAACTCAGTAAGCACAAGTACAAAACCTAGAATACTGGGAGAATAGAAAATGCAAAGGCTGGACCAGATGTGTCATAGTAATTGCATTTTTTCAAGTCAAAATTCCTCGAGATACAAACTATTATTTGAAAATTTCAAATTATATTATCCTTGTACTAACGATAGCTCATATGAATGTCTCATTTTAGGATTGCTGATGCCGAGGAAAACTTAGGTGAGAGTGAAGTTCGTGAGGCTCACTTGGCAAAATCCTTATTTTTCATCCGGATTGGGGACAAGGTATGTATATCTATTATAATTTATTGCTCATTTCCTTTTCCTTTCTGCTGCTGGAATCAAGTTAACACTGTCCTCTATGCACCAGGAGAAAGCCTTGGAGCATCTCAAGATAACAGAAACCAAGACTGTTGCAGTTGGGCAGAAGATGGACCTGGTATTCTATACATTGCAGCTTGGTTTCTTTGGCATGGATTTTGATCTCATTTCCAAAAGCATTGACAAAGCTAAAAGGTAATTCTTTGAATCTCAAATATCTCTAGTTATATCCTTTGCTATAATTTTCTGTTAAGAATGGGTTATCTAACTGTTTGCACCATATGACAGCTTGTTTGAAGAAGGTGGTGACTGGGAAAGGAAGAATAGGCTGAAAGTGTATGAAGGCCTCTACTGCATGTCCACTCGAAATTTCGAGAAGGCGGCCACATTGTTCTTGGATTCCATCTCAACCTTTACTACCTATGAACTTTTTCCCTATGACACCTTTATATTTTACACCGTTTTGACCAGCATAATAACATTGGACAGAGTTTCCTTAAAACAAAAGGTACTTCTATTTTTTTTTTTATGTCGCCTTTACACCATTTATCTTTTCTTTTAACCGTTGTTCTGTTATTTCTTGGCAAGTAAATATTAACTAGACTAATTTGCATCAGGTAGTGGATGCTCCTGAGATCTTGACAGTGATTGAAAAAATTCCACATCTTAAAGAGTTTTTGGACTCCTTATATGGTTGTCAATACAAGTCTTTCTTCTCAGCATTTGGTGAGTAGACATTGTTCGAATCACAGTAATTTTCTGTGATATCACAAGAGACACTTTGTGCTAAGTTAATACAAGTGCTGATAAATAATTCATTCCTATCTTTTTGCTTCTATGTTCATATATTTGTTTTATTTTGAAATTCATTTCAGCTGGCCTGACGGAGCAAATTAAGTTGGACCGCTATTTGCATCCACACTTCCGGTATTACATGAGAGAGATCAGAACTGTCATTTATTCCCAGTTTTTGGAATCTTACAAGAGTGTGACAATTGAAGCCATGGCAAAAGCGTTTGGAGTATCTGTGGATTTTATTGATGTGTAAGTGAATGCATCCCAAATCACTTGGTTTTTCGTTTTTAGCATTTTGATTAGATTACAATGTTGTGGGAGGCTGCTCATTACATATATTTGTTTCCAGGGAGCTATCACGTTTTATTGCAGCTGGGAAACTTCACTGTAAGATTGATAAAGTTGCAGGCGTTCTTGAAACTAACCGCCCTGATGCTAAGAATGCTCTTTACCAAGCAACCATTAAGCAAGGAGACTTCTTGTTGAACAGGATCCAGAAACTGTCTCGTGTGATCGATCTTTAG

Protein sequence

>MS.gene057145.t1

MANEGEEVQQPQLVLADKLFLLKQQDVQDIDKVRFKEDVFNFVKEHDMVPLYETLVADSVLDMDRVLLDSMRAKIDDELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKEKALEHLKITETKTVAVGQKMDLVFYTLQLGFFGMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFEKAATLFLDSISTFTTYELFPYDTFIFYTVLTSIITLDRVSLKQKVVDAPEILTVIEKIPHLKEFLDSLYGCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMREIRTVIYSQFLESYKSVTIEAMAKAFGVSVDFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL