Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39664.t1 | XP_003626830.1 | 97.1 | 208 | 6 | 0 | 1 | 208 | 1 | 208 | 2.40E-109 | 404.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39664.t1 | O04905 | 83.7 | 196 | 30 | 1 | 13 | 208 | 8 | 201 | 1.9e-91 | 336.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39664.t1 | B7FMF1 | 97.1 | 208 | 6 | 0 | 1 | 208 | 1 | 208 | 1.7e-109 | 404.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050084 | MS.gene39664 | 0.81556 | 8.68E-52 | -1.69E-46 |
| MS.gene050085 | MS.gene39664 | 0.818566 | 1.83E-52 | -1.69E-46 |
| MS.gene051003 | MS.gene39664 | 0.803632 | 3.18E-49 | -1.69E-46 |
| MS.gene057144 | MS.gene39664 | 0.8214 | 4.12E-53 | -1.69E-46 |
| MS.gene057145 | MS.gene39664 | 0.824537 | 7.65E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene39664 | MS.gene065461 | PPI |
| MS.gene39664 | MS.gene033347 | PPI |
| MS.gene39664 | MS.gene011389 | PPI |
| MS.gene39664 | MS.gene057156 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39664.t1 | MTR_8g009520 | 97.115 | 208 | 6 | 0 | 1 | 208 | 1 | 208 | 5.59e-150 | 415 |
| MS.gene39664.t1 | MTR_4g035850 | 60.753 | 186 | 73 | 0 | 22 | 207 | 32 | 217 | 3.17e-81 | 241 |
| MS.gene39664.t1 | MTR_5g068940 | 60.753 | 186 | 73 | 0 | 22 | 207 | 32 | 217 | 3.50e-81 | 241 |
| MS.gene39664.t1 | MTR_4g035850 | 60.753 | 186 | 73 | 0 | 22 | 207 | 55 | 240 | 9.05e-81 | 241 |
| MS.gene39664.t1 | MTR_4g035170 | 34.375 | 128 | 81 | 2 | 19 | 144 | 85 | 211 | 1.08e-23 | 96.3 |
| MS.gene39664.t1 | MTR_2g461290 | 27.803 | 223 | 129 | 5 | 6 | 201 | 59 | 276 | 1.09e-23 | 98.6 |
| MS.gene39664.t1 | MTR_4g103800 | 26.066 | 211 | 123 | 4 | 24 | 201 | 32 | 242 | 9.73e-20 | 84.3 |
| MS.gene39664.t1 | MTR_1g067050 | 25.888 | 197 | 101 | 4 | 27 | 180 | 59 | 253 | 3.18e-16 | 75.5 |
| MS.gene39664.t1 | MTR_7g100530 | 24.424 | 217 | 122 | 4 | 18 | 193 | 34 | 249 | 1.53e-15 | 73.6 |
| MS.gene39664.t1 | MTR_4g103800 | 32.184 | 87 | 58 | 1 | 24 | 109 | 32 | 118 | 5.72e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39664.t1 | AT5G26667 | 80.769 | 208 | 33 | 2 | 1 | 208 | 1 | 201 | 5.77e-123 | 346 |
| MS.gene39664.t1 | AT5G26667 | 80.769 | 208 | 33 | 2 | 1 | 208 | 1 | 201 | 5.77e-123 | 346 |
| MS.gene39664.t1 | AT5G26667 | 80.769 | 208 | 33 | 2 | 1 | 208 | 1 | 201 | 5.77e-123 | 346 |
| MS.gene39664.t1 | AT5G26667 | 81.553 | 206 | 31 | 2 | 1 | 206 | 1 | 199 | 9.90e-123 | 346 |
| MS.gene39664.t1 | AT3G60180 | 71.642 | 201 | 57 | 0 | 1 | 201 | 1 | 201 | 1.61e-108 | 310 |
| MS.gene39664.t1 | AT3G60180 | 71.642 | 201 | 57 | 0 | 1 | 201 | 1 | 201 | 1.61e-108 | 310 |
| MS.gene39664.t1 | AT4G25280 | 60.109 | 183 | 73 | 0 | 19 | 201 | 51 | 233 | 1.14e-78 | 236 |
| MS.gene39664.t1 | AT4G25280 | 60.109 | 183 | 73 | 0 | 19 | 201 | 51 | 233 | 1.14e-78 | 236 |
| MS.gene39664.t1 | AT3G60961 | 68.421 | 133 | 38 | 1 | 73 | 201 | 1 | 133 | 5.54e-66 | 199 |
| MS.gene39664.t1 | AT5G35170 | 29.665 | 209 | 117 | 4 | 20 | 201 | 78 | 283 | 4.19e-27 | 108 |
| MS.gene39664.t1 | AT5G35170 | 29.665 | 209 | 117 | 4 | 20 | 201 | 78 | 283 | 4.90e-27 | 108 |
| MS.gene39664.t1 | AT5G47840 | 30.144 | 209 | 116 | 4 | 20 | 201 | 63 | 268 | 1.76e-26 | 103 |
| MS.gene39664.t1 | AT5G47840 | 37.008 | 127 | 77 | 2 | 20 | 144 | 63 | 188 | 6.26e-26 | 101 |
| MS.gene39664.t1 | AT5G63400 | 27.488 | 211 | 120 | 4 | 24 | 201 | 36 | 246 | 1.59e-20 | 86.7 |
| MS.gene39664.t1 | AT5G50370 | 27.723 | 202 | 112 | 5 | 23 | 191 | 37 | 237 | 4.71e-18 | 80.1 |
| MS.gene39664.t1 | AT2G37250 | 25.238 | 210 | 112 | 3 | 27 | 193 | 57 | 264 | 2.98e-16 | 75.5 |
| MS.gene39664.t1 | AT2G39270 | 27.411 | 197 | 98 | 4 | 27 | 180 | 70 | 264 | 2.69e-15 | 73.2 |
| MS.gene39664.t1 | AT5G63400 | 31.200 | 125 | 82 | 2 | 24 | 144 | 36 | 160 | 6.01e-14 | 67.8 |
| MS.gene39664.t1 | AT5G50370 | 27.072 | 181 | 98 | 5 | 23 | 170 | 37 | 216 | 7.52e-14 | 68.2 |
Find 45 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATCTGGCTCCGAAAA+TGG | 0.173136 | 8.3:+79534030 | MS.gene39664:CDS |
| TTCCTTCTTTAATCATATTC+TGG | 0.194476 | 8.3:-79534361 | None:intergenic |
| GCAAATGTTGTCGAACATTT+TGG | 0.209865 | 8.3:+79533967 | MS.gene39664:CDS |
| CGTCTCTCCATTTCTTCCTC+TGG | 0.293885 | 8.3:-79534654 | None:intergenic |
| AATGACAAATTTCTTATTGA+TGG | 0.306611 | 8.3:+79534443 | MS.gene39664:CDS |
| TTCGACAACATTTGCACATT+GGG | 0.333869 | 8.3:-79533959 | None:intergenic |
| ACGACAACATTGAAACAATA+AGG | 0.372468 | 8.3:+79534801 | MS.gene39664:CDS |
| CCTACAGTTGTGTTTGTGTT+AGG | 0.377583 | 8.3:+79533297 | MS.gene39664:CDS |
| CCTCTGGGCAATCAAAATAT+AGG | 0.386242 | 8.3:-79534638 | None:intergenic |
| GTCTCTCCATTTCTTCCTCT+GGG | 0.403856 | 8.3:-79534653 | None:intergenic |
| CTGCGAGCGGAAATCAAATC+TGG | 0.406089 | 8.3:+79534018 | MS.gene39664:CDS |
| TGATTGCCCAGAGGAAGAAA+TGG | 0.417731 | 8.3:+79534647 | MS.gene39664:CDS |
| GACTCAAATACCTCCTCAAC+AGG | 0.418858 | 8.3:-79534999 | None:intergenic |
| TGATAATGGTACAGGTGGTC+CGG | 0.428269 | 8.3:+79533921 | MS.gene39664:intron |
| TTCCTTCCGAGGTAACAATT+AGG | 0.429145 | 8.3:+79534390 | MS.gene39664:CDS |
| ATTAATTATTATGATGCAAA+GGG | 0.443787 | 8.3:+79534863 | MS.gene39664:CDS |
| AACAATAAGGAAGCGATTCA+AGG | 0.444129 | 8.3:+79534814 | MS.gene39664:CDS |
| TCAAATCTGGCTCCGAAAAT+GGG | 0.446253 | 8.3:+79534031 | MS.gene39664:CDS |
| GGGTTTACTCACCTCAGTGC+TGG | 0.448432 | 8.3:+79533988 | MS.gene39664:CDS |
| GGTACAGGTGGTCCGGGCAG+TGG | 0.454545 | 8.3:+79533928 | MS.gene39664:intron |
| ATTTATTTGTAGGATACAAA+TGG | 0.459331 | 8.3:+79533255 | MS.gene39664:intron |
| TGGAGAGACGACTTCTTAGT+AGG | 0.467613 | 8.3:+79534667 | MS.gene39664:CDS |
| GGTGGTCCGGGCAGTGGAAA+AGG | 0.473432 | 8.3:+79533934 | MS.gene39664:intron |
| TCAAAATATAGGACAAATGT+TGG | 0.497184 | 8.3:-79534627 | None:intergenic |
| ATCCAGAATATGATTAAAGA+AGG | 0.504467 | 8.3:+79534359 | MS.gene39664:CDS |
| GCATCATAATAATTAATCAC+AGG | 0.514630 | 8.3:-79534857 | None:intergenic |
| GATAATGGTACAGGTGGTCC+GGG | 0.533653 | 8.3:+79533922 | MS.gene39664:intron |
| AGCCTAATTGTTACCTCGGA+AGG | 0.535061 | 8.3:-79534392 | None:intergenic |
| GTTCGACAACATTTGCACAT+TGG | 0.539900 | 8.3:-79533960 | None:intergenic |
| GATTAATTATTATGATGCAA+AGG | 0.546499 | 8.3:+79534862 | MS.gene39664:CDS |
| ATTTGATTTCCGCTCGCAGA+AGG | 0.550406 | 8.3:-79534014 | None:intergenic |
| CAGAAGCCTAATTGTTACCT+CGG | 0.555573 | 8.3:-79534396 | None:intergenic |
| TGTTATTGAAGCTGCAAACA+AGG | 0.570574 | 8.3:+79532602 | MS.gene39664:CDS |
| CCGTGCAGCATTTGAGAGAG+TGG | 0.571248 | 8.3:+79534487 | MS.gene39664:CDS |
| TGCTGGTGACCTTCTGCGAG+CGG | 0.575371 | 8.3:+79534005 | MS.gene39664:CDS |
| CATCATAATAATTAATCACA+GGG | 0.576231 | 8.3:-79534856 | None:intergenic |
| CCTAACACAAACACAACTGT+AGG | 0.576692 | 8.3:-79533297 | None:intergenic |
| TGTTGAGGAGGTATTTGAGT+CGG | 0.603618 | 8.3:+79535001 | MS.gene39664:CDS |
| TGCTGCAAGGCCTGTTGAGG+AGG | 0.615003 | 8.3:+79534989 | MS.gene39664:CDS |
| CCACTCTCTCAAATGCTGCA+CGG | 0.625742 | 8.3:-79534487 | None:intergenic |
| TGATGCTGCAAGGCCTGTTG+AGG | 0.626580 | 8.3:+79534986 | MS.gene39664:CDS |
| TGCAAAGGGAAAAGTTCGCA+AGG | 0.641623 | 8.3:+79534877 | MS.gene39664:CDS |
| ACGACTTCTTAGTAGGAACC+AGG | 0.649336 | 8.3:+79534674 | MS.gene39664:CDS |
| CAACAAGCAATGCAAGACAG+TGG | 0.683184 | 8.3:+79534419 | MS.gene39664:CDS |
| GCAGAAGGTCACCAGCACTG+AGG | 0.757069 | 8.3:-79533999 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATATGATAAAGTAAA+AGG | - | chr8.3:79535319-79535338 | None:intergenic | 10.0% |
| !! | TAAAATATGATAAAGTAAAA+GGG | - | chr8.3:79535318-79535337 | None:intergenic | 10.0% |
| !! | TTAAATTTAAATAAAGATAC+TGG | + | chr8.3:79535477-79535496 | MS.gene39664:intron | 10.0% |
| !!! | AAAATTTTGAAAATGATATT+GGG | + | chr8.3:79535686-79535705 | MS.gene39664:intron | 10.0% |
| !!! | TATAATTCTTTTTTTTTTTG+CGG | - | chr8.3:79532883-79532902 | None:intergenic | 10.0% |
| !! | AAGAATTAAATAATATGGTT+TGG | + | chr8.3:79532973-79532992 | MS.gene39664:intron | 15.0% |
| !! | ATTAATTATTATGATGCAAA+GGG | + | chr8.3:79534863-79534882 | MS.gene39664:CDS | 15.0% |
| !! | TATTGATCTAATAATGATAA+TGG | + | chr8.3:79533907-79533926 | MS.gene39664:intron | 15.0% |
| !! | TCTATAGAATTATAGAATTT+GGG | + | chr8.3:79532740-79532759 | MS.gene39664:intron | 15.0% |
| !! | TGAATTCTATAATTAAACAA+AGG | - | chr8.3:79533112-79533131 | None:intergenic | 15.0% |
| !!! | CAAAATTTTGAAAATGATAT+TGG | + | chr8.3:79535685-79535704 | MS.gene39664:intron | 15.0% |
| !! | AATGACAAATTTCTTATTGA+TGG | + | chr8.3:79534443-79534462 | MS.gene39664:CDS | 20.0% |
| !! | AATTATAATTTCAATGTGCT+TGG | - | chr8.3:79535845-79535864 | None:intergenic | 20.0% |
| !! | AATTTCTATGTATTTATGCT+AGG | + | chr8.3:79534205-79534224 | MS.gene39664:intron | 20.0% |
| !! | ACTATTTCAAAAGAAGAAAA+GGG | - | chr8.3:79534117-79534136 | None:intergenic | 20.0% |
| !! | ATTAAGAACAATATTAACAG+TGG | + | chr8.3:79535391-79535410 | MS.gene39664:intron | 20.0% |
| !! | ATTTATTTGTAGGATACAAA+TGG | + | chr8.3:79533255-79533274 | MS.gene39664:intron | 20.0% |
| !! | CATCATAATAATTAATCACA+GGG | - | chr8.3:79534859-79534878 | None:intergenic | 20.0% |
| !! | CTCTATAGAATTATAGAATT+TGG | + | chr8.3:79532739-79532758 | MS.gene39664:intron | 20.0% |
| !! | GATTAATTATTATGATGCAA+AGG | + | chr8.3:79534862-79534881 | MS.gene39664:CDS | 20.0% |
| !! | GCTTATTTATGTTTATCTTA+AGG | - | chr8.3:79533684-79533703 | None:intergenic | 20.0% |
| !! | TACTATTTCAAAAGAAGAAA+AGG | - | chr8.3:79534118-79534137 | None:intergenic | 20.0% |
| !! | TCAATTCTTCATTTATTTGT+AGG | + | chr8.3:79533245-79533264 | MS.gene39664:intron | 20.0% |
| !! | TTAATCACTTATTTGATTGT+AGG | + | chr8.3:79533175-79533194 | MS.gene39664:intron | 20.0% |
| !! | TTTATTTAAAAACTCATGCA+AGG | - | chr8.3:79535221-79535240 | None:intergenic | 20.0% |
| !! | TTTCTATCAAAGAGAAAATT+TGG | + | chr8.3:79535107-79535126 | MS.gene39664:intron | 20.0% |
| !!! | AATCAGATTTTCAAAAGAAA+CGG | - | chr8.3:79532688-79532707 | None:intergenic | 20.0% |
| !!! | ACTGCTTGTTATAAATAAAT+TGG | - | chr8.3:79533429-79533448 | None:intergenic | 20.0% |
| !!! | ATATAATTTGTACCCATTTT+CGG | - | chr8.3:79534046-79534065 | None:intergenic | 20.0% |
| !!! | ATTTGTTTTACAATGCATTA+TGG | + | chr8.3:79535337-79535356 | MS.gene39664:intron | 20.0% |
| !!! | ATTTTCTCTTTGATAGAAAA+TGG | - | chr8.3:79535106-79535125 | None:intergenic | 20.0% |
| !!! | TCTTCTTTTGAAATAGTAAA+TGG | + | chr8.3:79534120-79534139 | MS.gene39664:intron | 20.0% |
| ! | ACAAGATATTCAACTGATAT+AGG | + | chr8.3:79533519-79533538 | MS.gene39664:intron | 25.0% |
| ! | ATAAATACATTCGCTTTCAA+AGG | - | chr8.3:79533805-79533824 | None:intergenic | 25.0% |
| ! | ATACTGGATATCAATGATAA+AGG | + | chr8.3:79534769-79534788 | MS.gene39664:intron | 25.0% |
| ! | ATCCAGAATATGATTAAAGA+AGG | + | chr8.3:79534359-79534378 | MS.gene39664:CDS | 25.0% |
| ! | ATGTATTGCATAATAGTGTA+GGG | - | chr8.3:79534707-79534726 | None:intergenic | 25.0% |
| ! | ATGTATTTATGCTAGGTTAT+TGG | + | chr8.3:79534212-79534231 | MS.gene39664:intron | 25.0% |
| ! | ATTCAACTGATATAGGTATT+CGG | + | chr8.3:79533526-79533545 | MS.gene39664:intron | 25.0% |
| ! | ATTTGATTGTAGGATACTAA+CGG | + | chr8.3:79533185-79533204 | MS.gene39664:intron | 25.0% |
| ! | CATAAATAGTCAAATGCATT+AGG | - | chr8.3:79533379-79533398 | None:intergenic | 25.0% |
| ! | CCAAATATAAAACTAATTGC+CGG | + | chr8.3:79535523-79535542 | MS.gene39664:intron | 25.0% |
| ! | GCATCATAATAATTAATCAC+AGG | - | chr8.3:79534860-79534879 | None:intergenic | 25.0% |
| ! | TAAATACATTCGCTTTCAAA+GGG | - | chr8.3:79533804-79533823 | None:intergenic | 25.0% |
| ! | TACTGGATATCAATGATAAA+GGG | + | chr8.3:79534770-79534789 | MS.gene39664:intron | 25.0% |
| ! | TATGTATTGCATAATAGTGT+AGG | - | chr8.3:79534708-79534727 | None:intergenic | 25.0% |
| ! | TCAAAATATAGGACAAATGT+TGG | - | chr8.3:79534630-79534649 | None:intergenic | 25.0% |
| ! | TGTATTTATGCTAGGTTATT+GGG | + | chr8.3:79534213-79534232 | MS.gene39664:intron | 25.0% |
| ! | TTCCTTCTTTAATCATATTC+TGG | - | chr8.3:79534364-79534383 | None:intergenic | 25.0% |
| ! | TTTATTGTTGAAGTTGTTTG+TGG | + | chr8.3:79533851-79533870 | MS.gene39664:intron | 25.0% |
| !!! | ATTCAGTATTGATTTCAACT+TGG | + | chr8.3:79533148-79533167 | MS.gene39664:intron | 25.0% |
| !!! | CAACTGTAGGTTTTTTATTT+AGG | - | chr8.3:79533287-79533306 | None:intergenic | 25.0% |
| !!! | GTTTCTTTTGAAAATCTGAT+TGG | + | chr8.3:79532687-79532706 | MS.gene39664:intron | 25.0% |
| !!! | TATTAAGCACTGAAAACATA+AGG | - | chr8.3:79534752-79534771 | None:intergenic | 25.0% |
| !!! | TCTAATAATGATAATGGTAC+AGG | + | chr8.3:79533913-79533932 | MS.gene39664:intron | 25.0% |
| !!! | TGATTTACCTTCTCATTTTT+TGG | - | chr8.3:79535044-79535063 | None:intergenic | 25.0% |
| ACGACAACATTGAAACAATA+AGG | + | chr8.3:79534801-79534820 | MS.gene39664:CDS | 30.0% | |
| ACTGGCATAAACAAATTCAT+TGG | + | chr8.3:79535495-79535514 | MS.gene39664:intron | 30.0% | |
| ACTGTAAGAATTTACAGAAG+CGG | - | chr8.3:79535734-79535753 | None:intergenic | 30.0% | |
| AGTAAGATTAAAACAGCTTG+TGG | + | chr8.3:79533600-79533619 | MS.gene39664:intron | 30.0% | |
| ATTCAAAGGTAAGATGACTA+TGG | - | chr8.3:79533340-79533359 | None:intergenic | 30.0% | |
| ATTGACACAATCTCACTAAT+AGG | - | chr8.3:79533055-79533074 | None:intergenic | 30.0% | |
| ATTTCAACTATGGATGCATT+TGG | - | chr8.3:79533711-79533730 | None:intergenic | 30.0% | |
| CAGGAATTGATGTTTATCTA+TGG | + | chr8.3:79535940-79535959 | MS.gene39664:intron | 30.0% | |
| CATAGATAAACATCAATTCC+TGG | - | chr8.3:79535942-79535961 | None:intergenic | 30.0% | |
| CCAACTGGTATAATTGTATT+CGG | + | chr8.3:79535621-79535640 | MS.gene39664:intron | 30.0% | |
| CTAATTTCCTAAATGCATCA+TGG | + | chr8.3:79534584-79534603 | MS.gene39664:intron | 30.0% | |
| CTATAAACAATCAGTGAAAC+AGG | - | chr8.3:79534093-79534112 | None:intergenic | 30.0% | |
| GATGCATTTAGGAAATTAGA+AGG | - | chr8.3:79534583-79534602 | None:intergenic | 30.0% | |
| GCTATTGCAAACTTAACTTA+AGG | + | chr8.3:79533739-79533758 | MS.gene39664:intron | 30.0% | |
| GTAAGATTAAAACAGCTTGT+GGG | + | chr8.3:79533601-79533620 | MS.gene39664:intron | 30.0% | |
| GTTTACTTGTTTAGCATCAA+TGG | + | chr8.3:79535759-79535778 | MS.gene39664:intron | 30.0% | |
| TAAGTTAAGTTTGCAATAGC+TGG | - | chr8.3:79533739-79533758 | None:intergenic | 30.0% | |
| TGTTTATCTATGGTATTTGC+AGG | + | chr8.3:79535950-79535969 | MS.gene39664:intron | 30.0% | |
| TTTACTAACAGCTCATTCAA+AGG | - | chr8.3:79533354-79533373 | None:intergenic | 30.0% | |
| TTTCAGTCCAAAAAATGAGA+AGG | + | chr8.3:79535034-79535053 | MS.gene39664:CDS | 30.0% | |
| ! | ATGTTTTCAGTGCTTAATAC+TGG | + | chr8.3:79534753-79534772 | MS.gene39664:intron | 30.0% |
| ! | CAAATGTTGTCGAACATTTT+GGG | + | chr8.3:79533968-79533987 | MS.gene39664:CDS | 30.0% |
| ! | GACATTACATTACCTGTTTT+AGG | + | chr8.3:79534962-79534981 | MS.gene39664:intron | 30.0% |
| ! | GTTTTACAATGCATTATGGA+CGG | + | chr8.3:79535341-79535360 | MS.gene39664:intron | 30.0% |
| ! | TTATGACTTGTCTGACAAAT+TGG | + | chr8.3:79535800-79535819 | MS.gene39664:intron | 30.0% |
| ! | TTTTGTTGGACATTCTATCA+TGG | - | chr8.3:79532941-79532960 | None:intergenic | 30.0% |
| !! | AATAATGATAATGGTACAGG+TGG | + | chr8.3:79533916-79533935 | MS.gene39664:intron | 30.0% |
| !! | TAGTAAATGGCTAGCTTTAT+AGG | + | chr8.3:79534133-79534152 | MS.gene39664:intron | 30.0% |
| !! | TCATTGTGCTGTTTAAAATC+AGG | - | chr8.3:79534340-79534359 | None:intergenic | 30.0% |
| !!! | CCGGCAATTAGTTTTATATT+TGG | - | chr8.3:79535526-79535545 | None:intergenic | 30.0% |
| !!! | TGTGTGTGTTTTGTTTTGAA+AGG | - | chr8.3:79533651-79533670 | None:intergenic | 30.0% |
| AACAATAAGGAAGCGATTCA+AGG | + | chr8.3:79534814-79534833 | MS.gene39664:CDS | 35.0% | |
| ACACAATAGAGACAGACAAA+TGG | - | chr8.3:79533832-79533851 | None:intergenic | 35.0% | |
| AGTTGAATATCTTGTCGAGA+GGG | - | chr8.3:79533514-79533533 | None:intergenic | 35.0% | |
| ATGTTGATACACACAAGTCT+AGG | - | chr8.3:79535647-79535666 | None:intergenic | 35.0% | |
| CCGAATACAATTATACCAGT+TGG | - | chr8.3:79535624-79535643 | None:intergenic | 35.0% | |
| GAATTATAGAATTTGGGTCC+CGG | + | chr8.3:79532746-79532765 | MS.gene39664:intron | 35.0% | |
| GCTGGTATACATTTCAACTA+TGG | - | chr8.3:79533721-79533740 | None:intergenic | 35.0% | |
| TCAATTCCTGGAAAACATTG+CGG | - | chr8.3:79535930-79535949 | None:intergenic | 35.0% | |
| TGTTATTGAAGCTGCAAACA+AGG | + | chr8.3:79532602-79532621 | MS.gene39664:CDS | 35.0% | |
| TTCGACAACATTTGCACATT+GGG | - | chr8.3:79533962-79533981 | None:intergenic | 35.0% | |
| TTGGAACTTCCTTAGAATAC+AGG | + | chr8.3:79535819-79535838 | MS.gene39664:intron | 35.0% | |
| ! | ATTTTGTACCTTCCTAGTGT+TGG | - | chr8.3:79535671-79535690 | None:intergenic | 35.0% |
| ! | GCAAATGTTGTCGAACATTT+TGG | + | chr8.3:79533967-79533986 | MS.gene39664:CDS | 35.0% |
| !! | CTACTTTTCTTTGTACCAAC+TGG | + | chr8.3:79535606-79535625 | MS.gene39664:intron | 35.0% |
| !! | CTAGTTCTATAAGCTCTCAT+GGG | + | chr8.3:79533566-79533585 | MS.gene39664:intron | 35.0% |
| !! | TTGTCTTTTCTCAAAAGCAC+AGG | - | chr8.3:79535556-79535575 | None:intergenic | 35.0% |
| AAGCATTATCCCACTAATCG+GGG | - | chr8.3:79533016-79533035 | None:intergenic | 40.0% | |
| ACAAGAAACTCACCAAGACA+TGG | - | chr8.3:79534924-79534943 | None:intergenic | 40.0% | |
| AGGAAAAATTGTTCCTTCCG+AGG | + | chr8.3:79534379-79534398 | MS.gene39664:CDS | 40.0% | |
| ATAGTGTAGGGTCTATTACC+TGG | - | chr8.3:79534695-79534714 | None:intergenic | 40.0% | |
| CAAGCATTATCCCACTAATC+GGG | - | chr8.3:79533017-79533036 | None:intergenic | 40.0% | |
| CAATCAGTGAAACAGGACTA+CGG | - | chr8.3:79534086-79534105 | None:intergenic | 40.0% | |
| CAGAAGCCTAATTGTTACCT+CGG | - | chr8.3:79534399-79534418 | None:intergenic | 40.0% | |
| CAGTTGAATATCTTGTCGAG+AGG | - | chr8.3:79533515-79533534 | None:intergenic | 40.0% | |
| CCAAGCATTATCCCACTAAT+CGG | - | chr8.3:79533018-79533037 | None:intergenic | 40.0% | |
| CCTAACACAAACACAACTGT+AGG | - | chr8.3:79533300-79533319 | None:intergenic | 40.0% | |
| CCTACAGTTGTGTTTGTGTT+AGG | + | chr8.3:79533297-79533316 | MS.gene39664:CDS | 40.0% | |
| CCTCTGGGCAATCAAAATAT+AGG | - | chr8.3:79534641-79534660 | None:intergenic | 40.0% | |
| GATAATGCTTGGTTGTGTTG+TGG | + | chr8.3:79533026-79533045 | MS.gene39664:intron | 40.0% | |
| GGTAGTACATTTATCTGCTC+AGG | - | chr8.3:79534562-79534581 | None:intergenic | 40.0% | |
| GTAATGTCCTTTAGCACATG+AGG | - | chr8.3:79534950-79534969 | None:intergenic | 40.0% | |
| GTTCGACAACATTTGCACAT+TGG | - | chr8.3:79533963-79533982 | None:intergenic | 40.0% | |
| TAATCGGGGTCAGTACTAAT+AGG | - | chr8.3:79533002-79533021 | None:intergenic | 40.0% | |
| TGAGCATAGCTCATTTGGAA+GGG | + | chr8.3:79532769-79532788 | MS.gene39664:intron | 40.0% | |
| TGCAAAGCCATGATGCATTT+AGG | - | chr8.3:79534594-79534613 | None:intergenic | 40.0% | |
| TGTATCAACATGCCAACACT+AGG | + | chr8.3:79535656-79535675 | MS.gene39664:intron | 40.0% | |
| TTCCTTCCGAGGTAACAATT+AGG | + | chr8.3:79534390-79534409 | MS.gene39664:CDS | 40.0% | |
| TTGCAGCATCAACCTAAAAC+AGG | - | chr8.3:79534977-79534996 | None:intergenic | 40.0% | |
| TTGTTTGCCTCATGTGCTAA+AGG | + | chr8.3:79534940-79534959 | MS.gene39664:intron | 40.0% | |
| ! | AGCTGCAAACAAGGTATTCA+TGG | + | chr8.3:79532611-79532630 | MS.gene39664:intron | 40.0% |
| ! | ATCAAATCTGGCTCCGAAAA+TGG | + | chr8.3:79534030-79534049 | MS.gene39664:CDS | 40.0% |
| ! | GAAGCGATTCAAGGTTTTCT+TGG | + | chr8.3:79534823-79534842 | MS.gene39664:CDS | 40.0% |
| ! | GTTGTGTTTCTACCATGTCT+TGG | + | chr8.3:79534909-79534928 | MS.gene39664:intron | 40.0% |
| ! | TCAAATCTGGCTCCGAAAAT+GGG | + | chr8.3:79534031-79534050 | MS.gene39664:CDS | 40.0% |
| ! | TTCAAACCGCAATGTTTTCC+AGG | + | chr8.3:79535921-79535940 | MS.gene39664:intron | 40.0% |
| !! | GCTAGTTCTATAAGCTCTCA+TGG | + | chr8.3:79533565-79533584 | MS.gene39664:intron | 40.0% |
| !! | TGTTGAGGAGGTATTTGAGT+CGG | + | chr8.3:79535001-79535020 | MS.gene39664:CDS | 40.0% |
| !!! | CCTATATTTTGATTGCCCAG+AGG | + | chr8.3:79534638-79534657 | MS.gene39664:CDS | 40.0% |
| !!! | TGTTTTAGGTTGATGCTGCA+AGG | + | chr8.3:79534976-79534995 | MS.gene39664:intron | 40.0% |
| ACGACTTCTTAGTAGGAACC+AGG | + | chr8.3:79534674-79534693 | MS.gene39664:CDS | 45.0% | |
| AGCCTAATTGTTACCTCGGA+AGG | - | chr8.3:79534395-79534414 | None:intergenic | 45.0% | |
| CAACAAGCAATGCAAGACAG+TGG | + | chr8.3:79534419-79534438 | MS.gene39664:CDS | 45.0% | |
| CAATGCTCAGAAGTTGACGT+TGG | - | chr8.3:79534253-79534272 | None:intergenic | 45.0% | |
| CAGCTTAAACTCGATGCAGA+TGG | - | chr8.3:79534287-79534306 | None:intergenic | 45.0% | |
| CCGATTAGTGGGATAATGCT+TGG | + | chr8.3:79533015-79533034 | MS.gene39664:intron | 45.0% | |
| GACTCAAATACCTCCTCAAC+AGG | - | chr8.3:79535002-79535021 | None:intergenic | 45.0% | |
| GGACTACGGATCTATCACTA+CGG | - | chr8.3:79534072-79534091 | None:intergenic | 45.0% | |
| GTCTCTCCATTTCTTCCTCT+GGG | - | chr8.3:79534656-79534675 | None:intergenic | 45.0% | |
| GTGAGCATAGCTCATTTGGA+AGG | + | chr8.3:79532768-79532787 | MS.gene39664:intron | 45.0% | |
| TCAACATGCCAACACTAGGA+AGG | + | chr8.3:79535660-79535679 | MS.gene39664:intron | 45.0% | |
| TCCAAATGAGCTATGCTCAC+CGG | - | chr8.3:79532768-79532787 | None:intergenic | 45.0% | |
| TGATTGCCCAGAGGAAGAAA+TGG | + | chr8.3:79534647-79534666 | MS.gene39664:CDS | 45.0% | |
| TGCAAAGGGAAAAGTTCGCA+AGG | + | chr8.3:79534877-79534896 | MS.gene39664:CDS | 45.0% | |
| TGGAGAGACGACTTCTTAGT+AGG | + | chr8.3:79534667-79534686 | MS.gene39664:CDS | 45.0% | |
| TGTGCTTGGCCTGTATTCTA+AGG | - | chr8.3:79535831-79535850 | None:intergenic | 45.0% | |
| TTTGCGGTCAAATAGCCTAG+TGG | - | chr8.3:79532867-79532886 | None:intergenic | 45.0% | |
| ! | AGCTCTCATGGGAAGCTTTT+TGG | + | chr8.3:79533577-79533596 | MS.gene39664:intron | 45.0% |
| ! | ATTTGATTTCCGCTCGCAGA+AGG | - | chr8.3:79534017-79534036 | None:intergenic | 45.0% |
| ! | TGATGGTTTTCCTCGCAATG+AGG | + | chr8.3:79534460-79534479 | MS.gene39664:CDS | 45.0% |
| !! | TAGTACTGACCCCGATTAGT+GGG | + | chr8.3:79533004-79533023 | MS.gene39664:intron | 45.0% |
| !! | TGATAATGGTACAGGTGGTC+CGG | + | chr8.3:79533921-79533940 | MS.gene39664:intron | 45.0% |
| !! | TTAGTACTGACCCCGATTAG+TGG | + | chr8.3:79533003-79533022 | MS.gene39664:intron | 45.0% |
| !! | AAAAAAAGAATTATATAATT+TGG | + | chr8.3:79532888-79532907 | MS.gene39664:intron | 5.0% |
| !!! | TTTAAAAAAATATTTTTTGT+TGG | - | chr8.3:79532955-79532974 | None:intergenic | 5.0% |
| !!! | TTTTAAAGAATTAAATAATA+TGG | + | chr8.3:79532968-79532987 | MS.gene39664:intron | 5.0% |
| AGCTGAATGAGCGAGGAATC+CGG | - | chr8.3:79532826-79532845 | None:intergenic | 50.0% | |
| CATTGCAGTATGCAGGTGTC+GGG | + | chr8.3:79532792-79532811 | MS.gene39664:intron | 50.0% | |
| CCAAATGAGCTATGCTCACC+GGG | - | chr8.3:79532767-79532786 | None:intergenic | 50.0% | |
| CCACTCTCTCAAATGCTGCA+CGG | - | chr8.3:79534490-79534509 | None:intergenic | 50.0% | |
| CCTCGCTCATTCAGCTTAAG+CGG | + | chr8.3:79532830-79532849 | MS.gene39664:intron | 50.0% | |
| CGTCTCTCCATTTCTTCCTC+TGG | - | chr8.3:79534657-79534676 | None:intergenic | 50.0% | |
| CTCAGAAGTTGACGTTGGTC+AGG | - | chr8.3:79534248-79534267 | None:intergenic | 50.0% | |
| CTGCGAGCGGAAATCAAATC+TGG | + | chr8.3:79534018-79534037 | MS.gene39664:CDS | 50.0% | |
| GCATTGCAGTATGCAGGTGT+CGG | + | chr8.3:79532791-79532810 | MS.gene39664:intron | 50.0% | |
| ! | ATTGCAGTATGCAGGTGTCG+GGG | + | chr8.3:79532793-79532812 | MS.gene39664:intron | 50.0% |
| ! | CAAAAGCACAGGTTGTGAGC+CGG | - | chr8.3:79535545-79535564 | None:intergenic | 50.0% |
| ! | GATAATGGTACAGGTGGTCC+GGG | + | chr8.3:79533922-79533941 | MS.gene39664:intron | 50.0% |
| ! | TGCATCATGGCTTTGCAGAC+TGG | + | chr8.3:79534597-79534616 | MS.gene39664:intron | 50.0% |
| !! | GCGGTGAATTTCTAGCCACT+AGG | + | chr8.3:79532849-79532868 | MS.gene39664:intron | 50.0% |
| CCCGGTGAGCATAGCTCATT+TGG | + | chr8.3:79532764-79532783 | MS.gene39664:intron | 55.0% | |
| CCGCTTAAGCTGAATGAGCG+AGG | - | chr8.3:79532833-79532852 | None:intergenic | 55.0% | |
| CCGTGCAGCATTTGAGAGAG+TGG | + | chr8.3:79534487-79534506 | MS.gene39664:CDS | 55.0% | |
| GCTGAATGAGCGAGGAATCC+GGG | - | chr8.3:79532825-79532844 | None:intergenic | 55.0% | |
| GGGTTTACTCACCTCAGTGC+TGG | + | chr8.3:79533988-79534007 | MS.gene39664:CDS | 55.0% | |
| TGATGCTGCAAGGCCTGTTG+AGG | + | chr8.3:79534986-79535005 | MS.gene39664:CDS | 55.0% | |
| ! | GCACGGTTTTCCTCATTGCG+AGG | - | chr8.3:79534473-79534492 | None:intergenic | 55.0% |
| ! | TGGGTACCTTTTCCACTGCC+CGG | - | chr8.3:79533943-79533962 | None:intergenic | 55.0% |
| !! | GGAAGGGCATTGCAGTATGC+AGG | + | chr8.3:79532785-79532804 | MS.gene39664:intron | 55.0% |
| GCAGAAGGTCACCAGCACTG+AGG | - | chr8.3:79534002-79534021 | None:intergenic | 60.0% | |
| TGCTGCAAGGCCTGTTGAGG+AGG | + | chr8.3:79534989-79535008 | MS.gene39664:CDS | 60.0% | |
| TGCTGGTGACCTTCTGCGAG+CGG | + | chr8.3:79534005-79534024 | MS.gene39664:CDS | 60.0% | |
| GGTGGTCCGGGCAGTGGAAA+AGG | + | chr8.3:79533934-79533953 | MS.gene39664:intron | 65.0% | |
| !! | CAGGTGTCGGGGTTCGAACC+CGG | + | chr8.3:79532804-79532823 | MS.gene39664:intron | 65.0% |
| GGTACAGGTGGTCCGGGCAG+TGG | + | chr8.3:79533928-79533947 | MS.gene39664:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 79532594 | 79535980 | 79532594 | ID=MS.gene39664 |
| chr8.3 | mRNA | 79532594 | 79535980 | 79532594 | ID=MS.gene39664.t1;Parent=MS.gene39664 |
| chr8.3 | exon | 79532594 | 79532623 | 79532594 | ID=MS.gene39664.t1.exon1;Parent=MS.gene39664.t1 |
| chr8.3 | CDS | 79532594 | 79532623 | 79532594 | ID=cds.MS.gene39664.t1;Parent=MS.gene39664.t1 |
| chr8.3 | exon | 79533267 | 79533318 | 79533267 | ID=MS.gene39664.t1.exon2;Parent=MS.gene39664.t1 |
| chr8.3 | CDS | 79533267 | 79533318 | 79533267 | ID=cds.MS.gene39664.t1;Parent=MS.gene39664.t1 |
| chr8.3 | exon | 79533935 | 79534052 | 79533935 | ID=MS.gene39664.t1.exon3;Parent=MS.gene39664.t1 |
| chr8.3 | CDS | 79533935 | 79534052 | 79533935 | ID=cds.MS.gene39664.t1;Parent=MS.gene39664.t1 |
| chr8.3 | exon | 79534352 | 79534508 | 79534352 | ID=MS.gene39664.t1.exon4;Parent=MS.gene39664.t1 |
| chr8.3 | CDS | 79534352 | 79534508 | 79534352 | ID=cds.MS.gene39664.t1;Parent=MS.gene39664.t1 |
| chr8.3 | exon | 79534615 | 79534695 | 79534615 | ID=MS.gene39664.t1.exon5;Parent=MS.gene39664.t1 |
| chr8.3 | CDS | 79534615 | 79534695 | 79534615 | ID=cds.MS.gene39664.t1;Parent=MS.gene39664.t1 |
| chr8.3 | exon | 79534791 | 79534898 | 79534791 | ID=MS.gene39664.t1.exon6;Parent=MS.gene39664.t1 |
| chr8.3 | CDS | 79534791 | 79534898 | 79534791 | ID=cds.MS.gene39664.t1;Parent=MS.gene39664.t1 |
| chr8.3 | exon | 79534984 | 79535055 | 79534984 | ID=MS.gene39664.t1.exon7;Parent=MS.gene39664.t1 |
| chr8.3 | CDS | 79534984 | 79535055 | 79534984 | ID=cds.MS.gene39664.t1;Parent=MS.gene39664.t1 |
| chr8.3 | exon | 79535972 | 79535980 | 79535972 | ID=MS.gene39664.t1.exon8;Parent=MS.gene39664.t1 |
| chr8.3 | CDS | 79535972 | 79535980 | 79535972 | ID=cds.MS.gene39664.t1;Parent=MS.gene39664.t1 |
| Gene Sequence |
| Protein sequence |
