AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39750.t1 MTR_7g056430 67.626 139 5 2 32 131 1013 1150 6.79e-51 175
MS.gene39750.t1 MTR_7g056450 51.449 138 27 2 32 130 681 817 5.23e-36 132
MS.gene39750.t1 MTR_7g056663 52.899 138 25 2 32 130 698 834 3.39e-35 130
MS.gene39750.t1 MTR_7g056667 52.308 130 23 1 32 122 694 823 4.48e-33 124
MS.gene39750.t1 MTR_7g056510 49.286 140 26 3 32 132 681 814 4.60e-33 124
MS.gene39750.t1 MTR_7g056650 49.219 128 26 1 34 122 530 657 1.45e-32 122
MS.gene39750.t1 MTR_7g056640 51.938 129 23 1 32 121 689 817 1.79e-32 122
MS.gene39750.t1 MTR_7g056590 49.612 129 26 1 32 121 535 663 7.88e-32 120
MS.gene39750.t1 MTR_7g056620 48.837 129 27 1 32 121 7 135 1.20e-30 108
MS.gene39750.t1 MTR_7g056680 48.462 130 28 1 32 122 674 803 2.00e-30 116
MS.gene39750.t1 MTR_7g056623 50.388 129 25 1 32 121 647 775 2.12e-30 116
MS.gene39750.t1 MTR_7g056680 48.462 130 28 1 32 122 678 807 2.23e-30 116
MS.gene39750.t1 MTR_7g056680 48.462 130 28 1 32 122 513 642 2.29e-30 115
MS.gene39750.t1 MTR_7g056680 48.462 130 28 1 32 122 669 798 2.33e-30 116
MS.gene39750.t1 MTR_7g056680 48.462 130 28 1 32 122 673 802 2.47e-30 115
MS.gene39750.t1 MTR_7g056647 46.512 129 29 2 32 121 542 669 1.44e-27 108
MS.gene39750.t1 MTR_7g056647 46.512 129 29 2 32 121 704 831 3.53e-27 107
MS.gene39750.t1 MTR_2g011280 42.857 140 40 2 32 132 698 836 6.80e-27 106
MS.gene39750.t1 MTR_2g011340 42.857 140 40 2 32 132 694 832 7.42e-27 106
MS.gene39750.t1 MTR_2g011270 42.857 140 40 2 32 132 678 816 8.07e-27 105
MS.gene39750.t1 MTR_2g011240 46.218 119 25 1 32 111 675 793 9.28e-26 102
MS.gene39750.t1 MTR_2g011230 40.714 140 44 1 32 132 688 827 6.94e-25 100
MS.gene39750.t1 MTR_8g013600 40.458 131 39 1 32 123 655 785 9.53e-24 97.1
MS.gene39750.t1 MTR_8g013560 39.437 142 44 2 32 134 681 819 1.01e-23 97.1
MS.gene39750.t1 MTR_8g013580 39.695 131 40 1 32 123 683 813 6.29e-23 94.7
MS.gene39750.t1 MTR_8g013620 43.333 120 29 1 32 112 678 797 9.34e-23 94.4
MS.gene39750.t1 MTR_8g013620 43.333 120 29 1 32 112 638 757 1.05e-22 94.4
MS.gene39750.t1 MTR_8g013610 39.437 142 44 2 32 134 679 817 5.26e-22 92.0
MS.gene39750.t1 MTR_7g056420 93.333 45 2 1 32 76 1013 1056 3.32e-20 87.0
MS.gene39750.t1 MTR_4g098890 80.851 47 9 0 32 78 1238 1284 7.63e-19 83.2
MS.gene39750.t1 MTR_1g052880 36.752 117 37 1 32 111 879 995 5.81e-18 80.5
MS.gene39750.t1 MTR_3g011910 40.870 115 29 1 32 107 499 613 5.85e-18 80.5
MS.gene39750.t1 MTR_8g052190 34.043 141 53 2 32 132 650 790 1.02e-17 79.7
MS.gene39750.t1 MTR_8g052190 34.043 141 53 2 32 132 649 789 1.09e-17 79.7
MS.gene39750.t1 MTR_8g465150 36.735 147 48 4 32 139 689 829 1.12e-17 79.7
MS.gene39750.t1 MTR_8g052290 34.043 141 53 2 32 132 262 402 1.15e-17 79.3
MS.gene39750.t1 MTR_8g041690 35.616 146 47 2 32 138 515 652 2.10e-17 79.0
MS.gene39750.t1 MTR_8g465160 40.000 115 29 2 32 107 691 804 2.97e-17 78.6
MS.gene39750.t1 MTR_8g051600 34.058 138 51 2 32 129 646 783 4.72e-17 77.8
MS.gene39750.t1 MTR_4g091670 33.333 138 53 1 32 130 705 842 5.20e-17 77.8
MS.gene39750.t1 MTR_8g052570 34.677 124 42 1 32 116 235 358 5.97e-17 77.4
MS.gene39750.t1 MTR_8g052517 34.677 124 42 1 32 116 235 358 5.97e-17 77.4
MS.gene39750.t1 MTR_7g056510 82.222 45 7 1 32 76 691 734 6.79e-17 77.4
MS.gene39750.t1 MTR_8g052200 32.624 141 55 2 32 132 635 775 9.78e-17 77.0
MS.gene39750.t1 MTR_8g052060 31.333 150 63 2 32 141 614 763 1.31e-16 76.6
MS.gene39750.t1 MTR_3g011930 39.130 115 31 1 32 107 368 482 1.59e-16 76.3
MS.gene39750.t1 MTR_8g465590 35.821 134 46 2 32 126 11 143 1.70e-16 72.4
MS.gene39750.t1 MTR_8g041650 37.069 116 33 1 32 107 508 623 1.74e-16 76.3
MS.gene39750.t1 MTR_8g052170 32.576 132 50 1 32 124 209 340 1.97e-16 75.5
MS.gene39750.t1 MTR_8g052490 33.333 141 54 2 32 132 236 376 2.01e-16 75.9
MS.gene39750.t1 MTR_8g052350 34.454 119 39 1 35 114 1 119 2.08e-16 72.4
MS.gene39750.t1 MTR_8g052050 32.192 146 59 2 32 137 657 802 4.45e-16 75.1
MS.gene39750.t1 MTR_8g052080 31.507 146 60 2 32 137 658 803 5.39e-16 75.1
MS.gene39750.t1 MTR_8g061110 35.948 153 45 5 32 139 579 723 7.07e-16 74.7
MS.gene39750.t1 MTR_8g052420 31.507 146 60 2 32 137 638 783 7.82e-16 74.3
MS.gene39750.t1 MTR_4g081675 36.641 131 39 2 32 123 676 801 1.19e-15 73.9
MS.gene39750.t1 MTR_2g011190 35.915 142 45 4 32 134 695 829 1.38e-15 73.9
MS.gene39750.t1 MTR_8g052513 34.426 122 41 1 32 114 635 756 1.70e-15 73.6
MS.gene39750.t1 MTR_0148s0080 33.333 126 45 1 32 118 883 1008 1.81e-15 73.6
MS.gene39750.t1 MTR_1g021632 36.879 141 50 3 32 134 522 661 2.34e-15 73.2
MS.gene39750.t1 MTR_8g052120 34.426 122 41 1 32 114 628 749 2.97e-15 72.8
MS.gene39750.t1 MTR_8g442270 39.130 115 31 1 32 107 651 765 3.28e-15 72.8
MS.gene39750.t1 MTR_8g465410 34.028 144 53 3 20 122 665 807 5.22e-15 72.0
MS.gene39750.t1 MTR_7g056657 76.923 39 9 0 32 70 94 132 9.04e-15 68.2
MS.gene39750.t1 MTR_8g051840 32.787 122 43 1 32 114 4 125 1.09e-14 67.8
MS.gene39750.t1 MTR_5g005520 35.897 117 34 1 32 107 525 641 1.13e-14 71.2
MS.gene39750.t1 MTR_8g465570 33.846 130 46 2 32 122 640 768 2.76e-14 70.1
MS.gene39750.t1 MTR_4g081650 35.294 119 38 1 32 111 671 789 3.18e-14 69.7
MS.gene39750.t1 MTR_8g442310 37.931 116 31 3 32 107 607 721 3.33e-14 69.7
MS.gene39750.t1 MTR_8g465470 33.846 130 46 2 32 122 710 838 8.84e-14 68.6
MS.gene39750.t1 MTR_8g442370 36.522 115 34 1 32 107 641 755 1.17e-13 68.2
MS.gene39750.t1 MTR_3g020330 33.333 129 45 2 32 120 628 755 2.39e-13 67.4
MS.gene39750.t1 MTR_4g091570 36.283 113 32 2 32 105 927 1038 8.34e-13 65.9
MS.gene39750.t1 MTR_4g091570 63.636 44 16 0 32 75 135 178 3.12e-11 61.2
MS.gene39750.t1 MTR_2g011210 45.882 85 39 3 32 114 699 778 1.20e-12 65.1
MS.gene39750.t1 MTR_5g005520 64.583 48 17 0 32 79 520 567 1.47e-12 65.1
MS.gene39750.t1 MTR_8g051890 77.143 35 8 0 32 66 81 115 1.63e-12 61.6
MS.gene39750.t1 MTR_3g020230 33.333 126 44 2 32 118 637 761 2.98e-12 63.9
MS.gene39750.t1 MTR_8g051640 36.538 104 27 1 32 96 620 723 3.20e-12 63.9
MS.gene39750.t1 MTR_8g051850 63.043 46 17 0 31 76 117 162 3.23e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39750.t1 AT1G11350 36.957 138 47 2 32 130 684 820 3.36e-18 81.3
MS.gene39750.t1 AT1G65790 35.664 143 48 2 32 130 691 833 3.53e-18 81.3
MS.gene39750.t1 AT1G65800 36.585 123 35 1 32 111 695 817 4.15e-17 78.2
MS.gene39750.t1 AT4G03230 36.667 120 36 2 32 111 697 816 4.84e-17 78.2
MS.gene39750.t1 AT4G03230 36.667 120 36 2 32 111 705 824 5.44e-17 77.8
MS.gene39750.t1 AT4G03230 36.667 120 36 2 32 111 862 981 6.01e-17 77.8
MS.gene39750.t1 AT4G03230 36.667 120 36 2 32 111 862 981 6.01e-17 77.8
MS.gene39750.t1 AT4G03230 36.667 120 36 2 32 111 762 881 7.62e-17 77.4
MS.gene39750.t1 AT4G03230 36.667 120 36 2 32 111 762 881 7.62e-17 77.4
MS.gene39750.t1 AT4G03230 36.667 120 36 2 32 111 790 909 8.18e-17 77.4
MS.gene39750.t1 AT4G03230 36.667 120 36 2 32 111 704 823 8.47e-17 77.4
MS.gene39750.t1 AT1G11330 34.884 129 45 1 32 121 694 822 1.61e-16 76.6
MS.gene39750.t1 AT1G11330 34.884 129 45 1 32 121 696 824 1.69e-16 76.3
MS.gene39750.t1 AT1G61610 35.000 140 46 4 32 130 697 832 4.83e-16 75.1
MS.gene39750.t1 AT4G21380 35.664 143 48 3 32 130 698 840 1.99e-15 73.2
MS.gene39750.t1 AT4G23180 29.752 121 46 1 32 113 520 640 1.96e-13 67.4
MS.gene39750.t1 AT4G11530 36.441 118 35 2 32 109 524 641 1.23e-12 65.1
MS.gene39750.t1 AT4G21366 57.447 47 20 0 32 78 4 50 1.40e-12 61.2
MS.gene39750.t1 AT1G11330 66.667 45 15 0 32 76 696 740 2.68e-12 64.3

Find 32 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGACTTACAAATCCTAAA+AGG 0.259740 7.1:+45572359 None:intergenic
TTTGGTATGGCCAGAATCTT+TGG 0.261581 7.1:-45572657 MS.gene39750:CDS
TTCATTCCCTCCAAAGATTC+TGG 0.263798 7.1:+45572647 None:intergenic
ATAGCATCGCTTCTCAAAAT+TGG 0.277482 7.1:-45571370 MS.gene39750:CDS
AGGATGAATGCAGGTTTCTT+TGG 0.278631 7.1:+45572070 None:intergenic
AAATCTGATGTCTTTAGCTT+TGG 0.345102 7.1:-45572451 MS.gene39750:CDS
AGCTCAGCATATTCTGCTTC+AGG 0.350787 7.1:+45572050 None:intergenic
TTACTTCTTGAGATTATTAG+TGG 0.401314 7.1:-45572424 MS.gene39750:CDS
GAGTCGCCCCTGGCCTGTAT+AGG 0.409543 7.1:-45571436 MS.gene39750:CDS
AGCCATGGCAGGTCTGTCTA+TGG 0.438416 7.1:+45572138 None:intergenic
TGCTATTACTTGTCCTATAC+AGG 0.446595 7.1:+45571423 None:intergenic
GAAAATACTAGAAGAGTTGT+CGG 0.467469 7.1:-45572618 MS.gene39750:CDS
ATGAATGCAGGTTTCTTTGG+AGG 0.482900 7.1:+45572073 None:intergenic
TTACTTGTCCTATACAGGCC+AGG 0.496858 7.1:+45571428 None:intergenic
TTCTGCTTCAGGATGAATGC+AGG 0.505374 7.1:+45572061 None:intergenic
GAGACTTACAAATCCTAAAA+GGG 0.509312 7.1:+45572360 None:intergenic
GAAATTACAGCAGCCATGGC+AGG 0.512109 7.1:+45572127 None:intergenic
TGATATACTGACCAAGTTGA+CGG 0.529725 7.1:+45571991 None:intergenic
TTCCATAGACAGACCTGCCA+TGG 0.532711 7.1:-45572140 MS.gene39750:CDS
TACTTGTCCTATACAGGCCA+GGG 0.534302 7.1:+45571429 None:intergenic
TGACTTGTACTCCGTCAACT+TGG 0.541010 7.1:-45572002 MS.gene39750:intron
AATGCAGGTTTCTTTGGAGG+AGG 0.552536 7.1:+45572076 None:intergenic
GGTATGGCCAGAATCTTTGG+AGG 0.561045 7.1:-45572654 MS.gene39750:CDS
CATAGAAATTACAGCAGCCA+TGG 0.562517 7.1:+45572123 None:intergenic
TATTGTTAATAGTCTAATAA+CGG 0.566958 7.1:-45571466 MS.gene39750:intron
CGGCGTAGAAGAGTCGCCCC+TGG 0.581791 7.1:-45571446 MS.gene39750:CDS
TCTCCAGAATATGCAATGCA+AGG 0.605488 7.1:-45572487 MS.gene39750:intron
GAAGCAGAATATGCTGAGCT+CGG 0.612256 7.1:-45572047 MS.gene39750:CDS
AGGACAAGTAATAGCAGTGA+CGG 0.613750 7.1:-45571416 MS.gene39750:CDS
GACGGAGCTGTTCAGTGCAG+CGG 0.622816 7.1:-45571398 MS.gene39750:CDS
GTATGGCCAGAATCTTTGGA+GGG 0.633811 7.1:-45572653 MS.gene39750:CDS
ACTTGTCCTATACAGGCCAG+GGG 0.714500 7.1:+45571430 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATAAATTGTAATCTTA+TGG - chr7.1:45572341-45572360 MS.gene39750:intron 10.0%
!! TATTGTTAATAGTCTAATAA+CGG - chr7.1:45572577-45572596 MS.gene39750:intron 15.0%
!!! AAAATATATTTATGATGGAT+AGG + chr7.1:45571844-45571863 None:intergenic 15.0%
!! ACCTCAAAATATATTTATGA+TGG + chr7.1:45571849-45571868 None:intergenic 20.0%
!!! AATAGTATATTTTCTCTTAC+AGG - chr7.1:45572101-45572120 MS.gene39750:CDS 20.0%
!!! AGTTTTGCTATTAAGATAAT+TGG - chr7.1:45572196-45572215 MS.gene39750:intron 20.0%
!!! ATAGTTTTAAACAAAGGAAA+AGG + chr7.1:45571474-45571493 None:intergenic 20.0%
!!! ATTCTTATCTAACTCAATTT+TGG - chr7.1:45571710-45571729 MS.gene39750:intron 20.0%
!!! TCCATCATAAATATATTTTG+AGG - chr7.1:45571845-45571864 MS.gene39750:intron 20.0%
!!! TTTTCCTTTGTTTAAAACTA+TGG - chr7.1:45571473-45571492 MS.gene39750:intron 20.0%
! AAAAATATCAGACTTTGGTA+TGG - chr7.1:45571373-45571392 MS.gene39750:CDS 25.0%
! AAGATAATATTACAGTGGAT+AGG + chr7.1:45572264-45572283 None:intergenic 25.0%
! AATCCAAAAATATCAGACTT+TGG - chr7.1:45571368-45571387 MS.gene39750:CDS 25.0%
! ATGAATGGTGCTTAAATTAT+GGG - chr7.1:45572542-45572561 MS.gene39750:intron 25.0%
! TAGACAATCAAAATCTTCAT+TGG + chr7.1:45572134-45572153 None:intergenic 25.0%
! TCACAAAGATAATATTACAG+TGG + chr7.1:45572269-45572288 None:intergenic 25.0%
! TTACTTCTTGAGATTATTAG+TGG - chr7.1:45571619-45571638 MS.gene39750:intron 25.0%
!! ATACCAAAGTCTGATATTTT+TGG + chr7.1:45571374-45571393 None:intergenic 25.0%
!! TTGATTGTCTAGGAAATTTT+TGG - chr7.1:45572143-45572162 MS.gene39750:CDS 25.0%
!!! AATGAAGATTTTGATTGTCT+AGG - chr7.1:45572133-45572152 MS.gene39750:CDS 25.0%
!!! GACATTTGTTTTGTCAATTT+AGG - chr7.1:45571759-45571778 MS.gene39750:intron 25.0%
!!! TTGTTTTGTCAATTTAGGTA+TGG - chr7.1:45571764-45571783 MS.gene39750:intron 25.0%
AGAGACTTACAAATCCTAAA+AGG + chr7.1:45571687-45571706 None:intergenic 30.0%
CAATTTAGGTATGGATACAA+TGG - chr7.1:45571773-45571792 MS.gene39750:intron 30.0%
GAAAATACTAGAAGAGTTGT+CGG - chr7.1:45571425-45571444 MS.gene39750:CDS 30.0%
GAATGAATGAGTTTACGATT+TGG + chr7.1:45572430-45572449 None:intergenic 30.0%
GAGACTTACAAATCCTAAAA+GGG + chr7.1:45571686-45571705 None:intergenic 30.0%
GATGAATGGTGCTTAAATTA+TGG - chr7.1:45572541-45572560 MS.gene39750:intron 30.0%
TAAAACTATGGTAGCATACT+TGG - chr7.1:45571485-45571504 MS.gene39750:intron 30.0%
! AAATCTGATGTCTTTAGCTT+TGG - chr7.1:45571592-45571611 MS.gene39750:intron 30.0%
!! AGTTTTGTGTGATAGATGAA+TGG - chr7.1:45572527-45572546 MS.gene39750:intron 30.0%
!! TTGTCTAGGAAATTTTTGGA+AGG - chr7.1:45572147-45572166 MS.gene39750:CDS 30.0%
!!! ATTTTGAGGTCCATACATAT+AGG - chr7.1:45571859-45571878 MS.gene39750:intron 30.0%
!!! GCTACCATAGTTTTAAACAA+AGG + chr7.1:45571480-45571499 None:intergenic 30.0%
!!! TTTTGAGGTCCATACATATA+GGG - chr7.1:45571860-45571879 MS.gene39750:intron 30.0%
ACATAGAAGCCCTATATGTA+TGG + chr7.1:45571872-45571891 None:intergenic 35.0%
ATAGCATCGCTTCTCAAAAT+TGG - chr7.1:45572673-45572692 MS.gene39750:CDS 35.0%
TAAACCTTTACCTAGCATTC+TGG - chr7.1:45572308-45572327 MS.gene39750:intron 35.0%
TATATTCCTGGATCTATCAG+TGG + chr7.1:45571817-45571836 None:intergenic 35.0%
TGCTAGGTAAAGGTTTAACA+AGG + chr7.1:45572305-45572324 None:intergenic 35.0%
TGCTATTACTTGTCCTATAC+AGG + chr7.1:45572623-45572642 None:intergenic 35.0%
TGGATAGGATCATATATTCC+TGG + chr7.1:45571829-45571848 None:intergenic 35.0%
! TGATATACTGACCAAGTTGA+CGG + chr7.1:45572055-45572074 None:intergenic 35.0%
!! AAGTCATCGTTGTTTTCTTC+AGG + chr7.1:45572027-45572046 None:intergenic 35.0%
!! TTTTTGGAAGGACTACTTAC+TGG - chr7.1:45572159-45572178 MS.gene39750:intron 35.0%
AAATTACCAGCCAGAATGCT+AGG + chr7.1:45572321-45572340 None:intergenic 40.0%
AGGACAAGTAATAGCAGTGA+CGG - chr7.1:45572627-45572646 MS.gene39750:CDS 40.0%
AGGATGAATGCAGGTTTCTT+TGG + chr7.1:45571976-45571995 None:intergenic 40.0%
AGTCCTTGCATTGCATATTC+TGG + chr7.1:45571562-45571581 None:intergenic 40.0%
ATGAATGCAGGTTTCTTTGG+AGG + chr7.1:45571973-45571992 None:intergenic 40.0%
ATTCTACCACTGATAGATCC+AGG - chr7.1:45571808-45571827 MS.gene39750:intron 40.0%
CATAGAAATTACAGCAGCCA+TGG + chr7.1:45571923-45571942 None:intergenic 40.0%
CTAATTGCACTTCAATGCAG+TGG - chr7.1:45571526-45571545 MS.gene39750:intron 40.0%
GTATGGATACAATGGCAAGA+AGG - chr7.1:45571781-45571800 MS.gene39750:intron 40.0%
GTCAGTATATCAGACATCCA+TGG - chr7.1:45572063-45572082 MS.gene39750:CDS 40.0%
TCTCCAGAATATGCAATGCA+AGG - chr7.1:45571556-45571575 MS.gene39750:intron 40.0%
TTCATTCCCTCCAAAGATTC+TGG + chr7.1:45571399-45571418 None:intergenic 40.0%
TTCTTTGTTGCTATCTGCCA+TGG + chr7.1:45572083-45572102 None:intergenic 40.0%
TTTGGTATGGCCAGAATCTT+TGG - chr7.1:45571386-45571405 MS.gene39750:CDS 40.0%
! GAGAACTCTCTTACCCTTTT+AGG - chr7.1:45571670-45571689 MS.gene39750:intron 40.0%
AGCTCAGCATATTCTGCTTC+AGG + chr7.1:45571996-45572015 None:intergenic 45.0%
GAAGCAGAATATGCTGAGCT+CGG - chr7.1:45571996-45572015 MS.gene39750:intron 45.0%
GTATGGCCAGAATCTTTGGA+GGG - chr7.1:45571390-45571409 MS.gene39750:CDS 45.0%
TACTTGTCCTATACAGGCCA+GGG + chr7.1:45572617-45572636 None:intergenic 45.0%
TTACTTGTCCTATACAGGCC+AGG + chr7.1:45572618-45572637 None:intergenic 45.0%
TTCTGCTTCAGGATGAATGC+AGG + chr7.1:45571985-45572004 None:intergenic 45.0%
! AATGCAGGTTTCTTTGGAGG+AGG + chr7.1:45571970-45571989 None:intergenic 45.0%
! TGACTTGTACTCCGTCAACT+TGG - chr7.1:45572041-45572060 MS.gene39750:CDS 45.0%
ACTTGTCCTATACAGGCCAG+GGG + chr7.1:45572616-45572635 None:intergenic 50.0%
CCAGCCAGAATGCTAGGTAA+AGG + chr7.1:45572315-45572334 None:intergenic 50.0%
CCTTTACCTAGCATTCTGGC+TGG - chr7.1:45572312-45572331 MS.gene39750:intron 50.0%
GAAATTACAGCAGCCATGGC+AGG + chr7.1:45571919-45571938 None:intergenic 50.0%
GGTATGGCCAGAATCTTTGG+AGG - chr7.1:45571389-45571408 MS.gene39750:CDS 50.0%
TTCCATAGACAGACCTGCCA+TGG - chr7.1:45571903-45571922 MS.gene39750:intron 50.0%
AGCCATGGCAGGTCTGTCTA+TGG + chr7.1:45571908-45571927 None:intergenic 55.0%
GACGGAGCTGTTCAGTGCAG+CGG - chr7.1:45572645-45572664 MS.gene39750:CDS 60.0%
GAGTCGCCCCTGGCCTGTAT+AGG - chr7.1:45572607-45572626 MS.gene39750:intron 65.0%
CGGCGTAGAAGAGTCGCCCC+TGG - chr7.1:45572597-45572616 MS.gene39750:intron 70.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 45571360 45572705 45571360 ID=MS.gene39750
chr7.1 mRNA 45571360 45572705 45571360 ID=MS.gene39750.t1;Parent=MS.gene39750
chr7.1 exon 45572612 45572705 45572612 ID=MS.gene39750.t1.exon1;Parent=MS.gene39750.t1
chr7.1 CDS 45572612 45572705 45572612 ID=cds.MS.gene39750.t1;Parent=MS.gene39750.t1
chr7.1 exon 45572369 45572502 45572369 ID=MS.gene39750.t1.exon2;Parent=MS.gene39750.t1
chr7.1 CDS 45572369 45572502 45572369 ID=cds.MS.gene39750.t1;Parent=MS.gene39750.t1
chr7.1 exon 45572003 45572167 45572003 ID=MS.gene39750.t1.exon3;Parent=MS.gene39750.t1
chr7.1 CDS 45572003 45572167 45572003 ID=cds.MS.gene39750.t1;Parent=MS.gene39750.t1
chr7.1 exon 45571360 45571476 45571360 ID=MS.gene39750.t1.exon4;Parent=MS.gene39750.t1
chr7.1 CDS 45571360 45571476 45571360 ID=cds.MS.gene39750.t1;Parent=MS.gene39750.t1
Gene Sequence

>MS.gene39750

ATGAGCTTAATCCAAAAATATCAGACTTTGGTATGGCCAGAATCTTTGGAGGGAATGAAGATCAAGAAAATACTAGAAGAGTTGTCGGAACTTAGTAAGTACAACAATACACCTTTTCCTTTGTTTAAAACTATGGTAGCATACTTGGATATTCAATTTCAATTGTCTAATTGCACTTCAATGCAGTGGTTATATGTCTCCAGAATATGCAATGCAAGGACTGTTTTCTGATAAATCTGATGTCTTTAGCTTTGGAGTTTTACTTCTTGAGATTATTAGTGGAAGACGAAATTCAAGTTTTTATGACTGCGAGAACTCTCTTACCCTTTTAGGATTTGTAAGTCTCTTCAATTCTTATCTAACTCAATTTTGGATGTTCTACAACTTTCTCTAATGTTTGACATTTGTTTTGTCAATTTAGGTATGGATACAATGGCAAGAAGGCAATATTCTACCACTGATAGATCCAGGAATATATGATCCTATCCATCATAAATATATTTTGAGGTCCATACATATAGGGCTTCTATGTGTACAGCAATTTTCCATAGACAGACCTGCCATGGCTGCTGTAATTTCTATGCTGAACAGTGACATTGTAGATCTTCCTCCTCCAAAGAAACCTGCATTCATCCTGAAGCAGAATATGCTGAGCTCGGTGTCGCCTGAAGAAAACAACGATGACTTGTACTCCGTCAACTTGGTCAGTATATCAGACATCCATGGCAGATAGCAACAAAGAATAGTATATTTTCTCTTACAGGCAATGAGCCAATGAAGATTTTGATTGTCTAGGAAATTTTTGGAAGGACTACTTACTGGTTTTAAATGTTGAAAGTTTTGCTATTAAGATAATTGGTGAGCTCAGAAAACTCAATAGCTATATTATCTACTGTGTTTGCCTATCCACTGTAATATTATCTTTGTGAATTATTAAAATTACCTTGTTAAACCTTTACCTAGCATTCTGGCTGGTAATTTTTTTATAAATTGTAATCTTATGGTTATTTTTTTTTATAAATTGTAATCTTATGACAGTTTAAAACTCTTTTTATCGTAGTTTACAGCCAAATCGTAAACTCATTCATTCATTTACTATCATTTACTACACTTTGTTCGAATATTATAGTTTACGTTTCTCTTATATTTTCTATCAGTTTTGTTATCAGTTTTGTGTGATAGATGAATGGTGCTTAAATTATGGGTCTTAAAACGAGTATTGTTAATAGTCTAATAACGGCGTAGAAGAGTCGCCCCTGGCCTGTATAGGACAAGTAATAGCAGTGACGGAGCTGTTCAGTGCAGCGGTCACTATAGCATCGCTTCTCAAAATTGGCAAAATGTAA
Protein sequence

>MS.gene39750.t1

MSLIQKYQTLVWPESLEGMKIKKILEELSELKYAMQGLFSDKSDVFSFGVLLLEIISGRRNSSFYDCENSLTLLGFQFSIDRPAMAAVISMLNSDIVDLPPPKKPAFILKQNMLSSVSPEENNDDLYSVNLSNNGVEESPLACIGQVIAVTELFSAAVTIASLLKIGKM