Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39838.t1 | XP_003617066.1 | 88.7 | 565 | 60 | 1 | 1 | 561 | 1 | 565 | 2.20E-274 | 954.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39838.t1 | P14891 | 74.2 | 535 | 125 | 4 | 36 | 557 | 48 | 582 | 7.6e-220 | 764.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39838.t1 | G7KHH3 | 88.7 | 565 | 60 | 1 | 1 | 561 | 1 | 565 | 1.6e-274 | 954.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene39838 | MS.gene003352 | PPI |
| MS.gene39838 | MS.gene02144 | PPI |
| MS.gene39838 | MS.gene02757 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39838.t1 | MTR_5g087550 | 93.451 | 565 | 33 | 2 | 1 | 561 | 1 | 565 | 0.0 | 1047 |
| MS.gene39838.t1 | MTR_5g024880 | 67.474 | 578 | 160 | 5 | 1 | 561 | 1 | 567 | 0.0 | 789 |
| MS.gene39838.t1 | MTR_5g026450 | 72.190 | 525 | 133 | 4 | 43 | 561 | 25 | 542 | 0.0 | 780 |
| MS.gene39838.t1 | MTR_5g026460 | 72.190 | 525 | 133 | 4 | 43 | 561 | 25 | 542 | 0.0 | 780 |
| MS.gene39838.t1 | MTR_5g026480 | 72.190 | 525 | 133 | 4 | 43 | 561 | 25 | 542 | 0.0 | 780 |
| MS.gene39838.t1 | MTR_5g026430 | 72.000 | 525 | 134 | 4 | 43 | 561 | 25 | 542 | 0.0 | 777 |
| MS.gene39838.t1 | MTR_5g091050 | 72.275 | 523 | 133 | 4 | 43 | 561 | 31 | 545 | 0.0 | 776 |
| MS.gene39838.t1 | MTR_5g026500 | 71.483 | 526 | 138 | 4 | 43 | 561 | 30 | 550 | 0.0 | 773 |
| MS.gene39838.t1 | MTR_8g072640 | 67.009 | 585 | 167 | 6 | 1 | 561 | 1 | 583 | 0.0 | 766 |
| MS.gene39838.t1 | MTR_5g024880 | 64.930 | 499 | 147 | 7 | 1 | 482 | 1 | 488 | 0.0 | 651 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39838.t1 | AT1G76490 | 71.821 | 582 | 139 | 6 | 1 | 557 | 51 | 632 | 0.0 | 837 |
| MS.gene39838.t1 | AT2G17370 | 65.426 | 564 | 174 | 7 | 2 | 556 | 3 | 554 | 0.0 | 740 |
Find 181 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCGTTTATCTACCTTCT+AGG | 0.162002 | 5.4:+68860216 | MS.gene39838:CDS |
| CTGATGTCTGCCATTGCTTC+AGG | 0.210943 | 5.4:+68863273 | MS.gene39838:CDS |
| AGAAACCTGCCGCAGTTAAT+TGG | 0.233252 | 5.4:+68862698 | MS.gene39838:CDS |
| TTCCCTGACATGGATGTTAT+TGG | 0.284863 | 5.4:+68861981 | MS.gene39838:CDS |
| CTTGCTGGTTCTGCTGTTGC+TGG | 0.297128 | 5.4:+68862835 | MS.gene39838:CDS |
| CTCTTGGCAACCATTGTTGC+TGG | 0.337492 | 5.4:+68863225 | MS.gene39838:CDS |
| GGGAGAGCATCAGAGGCTTT+TGG | 0.339690 | 5.4:-68860042 | None:intergenic |
| TTGGAAGGTTTACCATTAGA+AGG | 0.342151 | 5.4:+68860525 | MS.gene39838:CDS |
| ATGGATGTTATTGGCATATC+AGG | 0.348723 | 5.4:+68861990 | MS.gene39838:CDS |
| CTATTCACTCGAATCGCGGC+TGG | 0.351929 | 5.4:+68860440 | MS.gene39838:CDS |
| CGGTGGTGGTTTGCGGCGGC+CGG | 0.353787 | 5.4:-68859960 | None:intergenic |
| TCTGCTGTTGCTGGCACTCT+TGG | 0.363031 | 5.4:+68862844 | MS.gene39838:CDS |
| GTTGGATGGATTTGAATATA+CGG | 0.364431 | 5.4:+68860635 | MS.gene39838:CDS |
| ATCTACCTTCTAGGTTTCTT+CGG | 0.369751 | 5.4:+68860225 | MS.gene39838:CDS |
| ACGAACATCAGGAAGATCTT+TGG | 0.383156 | 5.4:+68860506 | MS.gene39838:CDS |
| CCTCACCTGAACCCTCATTA+TGG | 0.391788 | 5.4:+68860364 | MS.gene39838:CDS |
| GGAAACAATGGCGGCGAGTT+CGG | 0.393903 | 5.4:-68860187 | None:intergenic |
| TGTAAAGCTATATATGCTTC+TGG | 0.397261 | 5.4:+68860708 | MS.gene39838:CDS |
| TGGTTTGCGGCGGCCGGCGA+TGG | 0.401498 | 5.4:-68859954 | None:intergenic |
| TCGTAATCAAATCCTTCTAA+TGG | 0.402585 | 5.4:-68860537 | None:intergenic |
| CGGCCGCCGCAAACCACCAC+CGG | 0.407539 | 5.4:+68859961 | MS.gene39838:CDS |
| CTCCACTAGGGCAGCCACCT+TGG | 0.410701 | 5.4:-68862794 | None:intergenic |
| GGCGACTACAGAAGGGTGTT+TGG | 0.411168 | 5.4:+68860665 | MS.gene39838:CDS |
| TTCCATCATTGTTATGCAAT+GGG | 0.418759 | 5.4:-68862950 | None:intergenic |
| TGATGTCTGCCATTGCTTCA+GGG | 0.419185 | 5.4:+68863274 | MS.gene39838:CDS |
| AAGGTCTCTCCCATCATTTA+CGG | 0.422951 | 5.4:-68862974 | None:intergenic |
| GGTAGGGTATATTCAAATTC+CGG | 0.423676 | 5.4:+68860590 | MS.gene39838:CDS |
| AGGCTGATTGGCGGTGGTGT+TGG | 0.429704 | 5.4:-68860328 | None:intergenic |
| GGTATTCAGTGTGCTATGGC+TGG | 0.436039 | 5.4:+68861855 | MS.gene39838:CDS |
| GGTTGCGACGGCGCCGGTGG+TGG | 0.438311 | 5.4:-68859974 | None:intergenic |
| ATGGTGTTGGTGAGGTAGAG+AGG | 0.442236 | 5.4:-68860069 | None:intergenic |
| TCTGACCATAATGAGGGTTC+AGG | 0.442404 | 5.4:-68860369 | None:intergenic |
| ACGGCGCCGGTGGTGGTTTG+CGG | 0.442491 | 5.4:-68859967 | None:intergenic |
| GCTACACGCGCTTCTCATGA+TGG | 0.443821 | 5.4:+68860270 | MS.gene39838:CDS |
| ATGCCAATAACATCCATGTC+AGG | 0.447589 | 5.4:-68861984 | None:intergenic |
| CTTGAACATGCTTGGTGTGA+AGG | 0.450968 | 5.4:+68863167 | MS.gene39838:CDS |
| CAAATTCCGGTGGGTGTGGC+GGG | 0.452042 | 5.4:+68860603 | MS.gene39838:CDS |
| CAAAGAAGATGTGGTGAAGA+AGG | 0.453751 | 5.4:+68862762 | MS.gene39838:CDS |
| ACGCGCTTCTCATGATGGTT+GGG | 0.455927 | 5.4:+68860275 | MS.gene39838:CDS |
| TGTGGCGGGACCATTGTTGT+TGG | 0.464340 | 5.4:+68860617 | MS.gene39838:CDS |
| AAGAACGTTCTGCACCCCTT+TGG | 0.466291 | 5.4:-68861940 | None:intergenic |
| CACGCGCTTCTCATGATGGT+TGG | 0.466770 | 5.4:+68860274 | MS.gene39838:CDS |
| TCAATCCAATTAACTGCGGC+AGG | 0.468892 | 5.4:-68862703 | None:intergenic |
| GCTGTTGCTGGCACTCTTGG+CGG | 0.470685 | 5.4:+68862847 | MS.gene39838:CDS |
| TTGGTGAGGTAGAGAGGGAG+AGG | 0.473154 | 5.4:-68860063 | None:intergenic |
| AAGAGTCTCGAGTTTGATCC+TGG | 0.476503 | 5.4:-68863207 | None:intergenic |
| CACCCTTCTGTAGTCGCCAT+TGG | 0.478661 | 5.4:-68860660 | None:intergenic |
| TTCCCATTGCATAACAATGA+TGG | 0.478827 | 5.4:+68862948 | MS.gene39838:CDS |
| CAGCCGCGATTCGAGTGAAT+AGG | 0.479278 | 5.4:-68860439 | None:intergenic |
| TAACTAAAATCTCATCTTGA+GGG | 0.480226 | 5.4:+68863343 | MS.gene39838:CDS |
| CTTCCATCATTGTTATGCAA+TGG | 0.481383 | 5.4:-68862951 | None:intergenic |
| AACTCTCAGGTGGGTACAGT+AGG | 0.482262 | 5.4:+68863111 | MS.gene39838:intron |
| GCCGCAGTTAATTGGATTGA+GGG | 0.485552 | 5.4:+68862706 | MS.gene39838:CDS |
| ATGATGGAAGCCGTAAATGA+TGG | 0.485702 | 5.4:+68862964 | MS.gene39838:CDS |
| TCTGCTTGCTTGAACATGCT+TGG | 0.486251 | 5.4:+68863159 | MS.gene39838:CDS |
| TATGAGATTTACATGTAGTA+CGG | 0.488443 | 5.4:+68861890 | MS.gene39838:CDS |
| CGTATTATCTCCTCCACAGA+TGG | 0.496364 | 5.4:+68860118 | MS.gene39838:CDS |
| TGGTGTTGGTGAGGTAGAGA+GGG | 0.497806 | 5.4:-68860068 | None:intergenic |
| ATCTTCCTCTGACCATAATG+AGG | 0.498216 | 5.4:-68860376 | None:intergenic |
| GGCGGTGGTGTTGGTAGTGG+TGG | 0.498228 | 5.4:-68860319 | None:intergenic |
| GAGTTTGCGGAGAGGCTGAT+TGG | 0.498628 | 5.4:-68860340 | None:intergenic |
| ATGTAGTACGGGTGATGCCA+TGG | 0.499191 | 5.4:+68861902 | MS.gene39838:CDS |
| ACTCTCAGGTGGGTACAGTA+GGG | 0.499741 | 5.4:+68863112 | MS.gene39838:intron |
| AGTAGATTTGCCAGGTTGCT+AGG | 0.499869 | 5.4:+68861834 | MS.gene39838:CDS |
| ATTGGCGGTGGTGTTGGTAG+TGG | 0.502903 | 5.4:-68860322 | None:intergenic |
| CGATACCGAAGAAACCTAGA+AGG | 0.505448 | 5.4:-68860230 | None:intergenic |
| GAAGAAGAGCGTGAAGAAGA+TGG | 0.505810 | 5.4:-68860088 | None:intergenic |
| GGCCGGCGATGGAGGTCCAT+TGG | 0.505883 | 5.4:-68859943 | None:intergenic |
| TCAGGTCGAGTAGATTTGCC+AGG | 0.506358 | 5.4:+68861826 | MS.gene39838:intron |
| GGATGAACATGGTCTCCAAA+GGG | 0.506615 | 5.4:+68861925 | MS.gene39838:CDS |
| GTTGGTAGTGGTGGTGATGA+CGG | 0.507814 | 5.4:-68860310 | None:intergenic |
| TGCCGCAGTTAATTGGATTG+AGG | 0.507886 | 5.4:+68862705 | MS.gene39838:CDS |
| GCGGGACCATTGTTGTTGGA+TGG | 0.508898 | 5.4:+68860621 | MS.gene39838:CDS |
| TATTCAAATTCCGGTGGGTG+TGG | 0.510401 | 5.4:+68860599 | MS.gene39838:CDS |
| TGCAAAATCACCTCAATGGA+TGG | 0.510987 | 5.4:-68863015 | None:intergenic |
| GAGACGGTGGGAATGAGGGT+TGG | 0.512509 | 5.4:-68859995 | None:intergenic |
| GAAGCTTTACAACGAACATC+AGG | 0.515590 | 5.4:+68860495 | MS.gene39838:CDS |
| AGGATCAAACTCGAGACTCT+TGG | 0.517457 | 5.4:+68863209 | MS.gene39838:CDS |
| GGGATGAACATGGTCTCCAA+AGG | 0.517477 | 5.4:+68861924 | MS.gene39838:CDS |
| GCGGAGAGGCTGATTGGCGG+TGG | 0.519891 | 5.4:-68860334 | None:intergenic |
| TCAAATTCCGGTGGGTGTGG+CGG | 0.520146 | 5.4:+68860602 | MS.gene39838:CDS |
| GATTTGAGACGGTGGGAATG+AGG | 0.521781 | 5.4:-68860000 | None:intergenic |
| TTCTTTAGGAAATTATTGCT+CGG | 0.523240 | 5.4:+68862672 | MS.gene39838:intron |
| GTTCAGGTGAGGTGAGTTTG+CGG | 0.524230 | 5.4:-68860353 | None:intergenic |
| AGGGTTGGTTGCGACGGCGC+CGG | 0.524429 | 5.4:-68859980 | None:intergenic |
| ATGAGATTTACATGTAGTAC+GGG | 0.530951 | 5.4:+68861891 | MS.gene39838:CDS |
| TCGAAATGATTTCCCTGACA+TGG | 0.532844 | 5.4:+68861971 | MS.gene39838:CDS |
| GCTAGGTATTCAGTGTGCTA+TGG | 0.535257 | 5.4:+68861851 | MS.gene39838:CDS |
| CGGAAACAATGTTACTAGCA+TGG | 0.537129 | 5.4:-68862879 | None:intergenic |
| AACCAATGGACCTCCATCGC+CGG | 0.537894 | 5.4:+68859941 | None:intergenic |
| CACGACGAATTGCCGCGGCT+CGG | 0.537941 | 5.4:-68860473 | None:intergenic |
| GTTGGTTGCGACGGCGCCGG+TGG | 0.538330 | 5.4:-68859977 | None:intergenic |
| TGTAGTACGGGTGATGCCAT+GGG | 0.538474 | 5.4:+68861903 | MS.gene39838:CDS |
| AGTGACAATGCCATCCATTG+AGG | 0.542652 | 5.4:+68863005 | MS.gene39838:CDS |
| GGAAACAATGTTACTAGCAT+GGG | 0.543165 | 5.4:-68862878 | None:intergenic |
| GGAATGAGGGTTGGTTGCGA+CGG | 0.544081 | 5.4:-68859986 | None:intergenic |
| GGGAGATTGTTTCCGAGCCG+CGG | 0.546544 | 5.4:+68860461 | MS.gene39838:CDS |
| GGGATGCAAAATCACCTCAA+TGG | 0.547483 | 5.4:-68863019 | None:intergenic |
| TTGAACATGCTTGGTGTGAA+GGG | 0.547739 | 5.4:+68863168 | MS.gene39838:CDS |
| CCATGTTGTAGTTGTAACTG+AGG | 0.548943 | 5.4:-68861529 | None:intergenic |
| AATGGTCCCGCCACACCCAC+CGG | 0.552343 | 5.4:-68860609 | None:intergenic |
| CTCTCAGGTGGGTACAGTAG+GGG | 0.552717 | 5.4:+68863113 | MS.gene39838:intron |
| GTTCCAATGGCGACTACAGA+AGG | 0.553048 | 5.4:+68860657 | MS.gene39838:CDS |
| TTCAATTGTAAACTCCGTTG+TGG | 0.556280 | 5.4:+68860401 | MS.gene39838:CDS |
| TTTGCGGCGGCCGGCGATGG+AGG | 0.557103 | 5.4:-68859951 | None:intergenic |
| AGGGCAGTGTTGTGAAATGC+CGG | 0.557390 | 5.4:+68860569 | MS.gene39838:CDS |
| GGAGACCATGTTCATCCCCA+TGG | 0.558985 | 5.4:-68861919 | None:intergenic |
| GTATTCAGTGTGCTATGGCT+GGG | 0.560186 | 5.4:+68861856 | MS.gene39838:CDS |
| ATTGTAAACTCCGTTGTGGA+AGG | 0.560846 | 5.4:+68860405 | MS.gene39838:CDS |
| GGATCTTGTCACGCCATCTG+TGG | 0.561301 | 5.4:-68860131 | None:intergenic |
| GCGCCGGTGGTGGTTTGCGG+CGG | 0.561395 | 5.4:-68859964 | None:intergenic |
| CATGAAGAGGAGTGGAGCTA+CGG | 0.562649 | 5.4:-68860152 | None:intergenic |
| TTGGTTGCTAGTACAAATAG+AGG | 0.563083 | 5.4:+68860684 | MS.gene39838:CDS |
| GTAACTAAAATCTCATCTTG+AGG | 0.563271 | 5.4:+68863342 | MS.gene39838:CDS |
| AGGGAGAGGGAGAGCATCAG+AGG | 0.566983 | 5.4:-68860049 | None:intergenic |
| TGATGGAAGCCGTAAATGAT+GGG | 0.568019 | 5.4:+68862965 | MS.gene39838:CDS |
| GTGAAATTGACGACATGAAG+AGG | 0.568568 | 5.4:-68860165 | None:intergenic |
| AGCAATTATCAAAGAAGATG+TGG | 0.576726 | 5.4:+68862753 | MS.gene39838:CDS |
| TATTCACTCGAATCGCGGCT+GGG | 0.580700 | 5.4:+68860441 | MS.gene39838:CDS |
| CTTCCTATTCACTCGAATCG+CGG | 0.581947 | 5.4:+68860436 | MS.gene39838:CDS |
| GGTGCAAGCAAGGAGGAACC+AGG | 0.582386 | 5.4:+68863189 | MS.gene39838:CDS |
| TAAAACAGCTCCAGCAACAA+TGG | 0.583428 | 5.4:-68863235 | None:intergenic |
| GTAGATAAACGAAGCGATGA+GGG | 0.584394 | 5.4:-68860208 | None:intergenic |
| TGGTGAGGTAGAGAGGGAGA+GGG | 0.584669 | 5.4:-68860062 | None:intergenic |
| TCTTCCTCTGACCATAATGA+GGG | 0.587564 | 5.4:-68860375 | None:intergenic |
| TCTCAGGTGGGTACAGTAGG+GGG | 0.588143 | 5.4:+68863114 | MS.gene39838:intron |
| GAGCGTGAAGAAGATGGTGT+TGG | 0.589470 | 5.4:-68860082 | None:intergenic |
| AGTGTTGTGAAATGCCGGTA+GGG | 0.592083 | 5.4:+68860574 | MS.gene39838:CDS |
| TGAGCATGTTTAGCTCCACT+AGG | 0.592566 | 5.4:-68862807 | None:intergenic |
| TGCCAATAACATCCATGTCA+GGG | 0.592633 | 5.4:-68861983 | None:intergenic |
| TTGAGCTGGATCTTGACCTG+TGG | 0.594253 | 5.4:-68862914 | None:intergenic |
| CAGTGTTGTGAAATGCCGGT+AGG | 0.595497 | 5.4:+68860573 | MS.gene39838:CDS |
| GACCAAGGTGGCTGCCCTAG+TGG | 0.595928 | 5.4:+68862792 | MS.gene39838:CDS |
| CTTTGCAATATATCTGAACG+CGG | 0.596032 | 5.4:-68861486 | None:intergenic |
| TTTGCGGAGAGGCTGATTGG+CGG | 0.596989 | 5.4:-68860337 | None:intergenic |
| GACTAGTTGCCCTGAAGCAA+TGG | 0.597061 | 5.4:-68863283 | None:intergenic |
| ATGATCTGTTGTATTTCATG+TGG | 0.597760 | 5.4:-68863311 | None:intergenic |
| TGGTGTGAAGGGTGCAAGCA+AGG | 0.600451 | 5.4:+68863179 | MS.gene39838:CDS |
| TGATGCCATGGGGATGAACA+TGG | 0.600533 | 5.4:+68861914 | MS.gene39838:CDS |
| ATTTGAATATACGGTTCCAA+TGG | 0.603145 | 5.4:+68860644 | MS.gene39838:CDS |
| TTAATTGGATTGAGGGACGC+GGG | 0.604701 | 5.4:+68862713 | MS.gene39838:CDS |
| TCTTGTCACGCCATCTGTGG+AGG | 0.605289 | 5.4:-68860128 | None:intergenic |
| AGGGTATATTCAAATTCCGG+TGG | 0.606973 | 5.4:+68860593 | MS.gene39838:CDS |
| GAGCATGTTTAGCTCCACTA+GGG | 0.606988 | 5.4:-68862806 | None:intergenic |
| ATTTGAGACGGTGGGAATGA+GGG | 0.610172 | 5.4:-68859999 | None:intergenic |
| TGTCAGGGAAATCATTTCGA+AGG | 0.610857 | 5.4:-68861968 | None:intergenic |
| ACATCAGGAAGATCTTTGGA+AGG | 0.611811 | 5.4:+68860510 | MS.gene39838:CDS |
| CGAAGCGATGAGGGAAACAA+TGG | 0.612271 | 5.4:-68860199 | None:intergenic |
| GGAATTTGAATATACCCTAC+CGG | 0.615358 | 5.4:-68860588 | None:intergenic |
| GGTAGATAAACGAAGCGATG+AGG | 0.616427 | 5.4:-68860209 | None:intergenic |
| TTTGCAATATATCTGAACGC+GGG | 0.616522 | 5.4:-68861485 | None:intergenic |
| GGAACGTGATTTGAGACGGT+GGG | 0.616597 | 5.4:-68860007 | None:intergenic |
| GAGGGGAACGTGATTTGAGA+CGG | 0.616715 | 5.4:-68860011 | None:intergenic |
| GTTAATTGGATTGAGGGACG+CGG | 0.624111 | 5.4:+68862712 | MS.gene39838:CDS |
| TGGTTGCTAGTACAAATAGA+GGG | 0.629909 | 5.4:+68860685 | MS.gene39838:CDS |
| CCTCAGTTACAACTACAACA+TGG | 0.630725 | 5.4:+68861529 | MS.gene39838:CDS |
| CAGCAACAGCAGAACCAGCA+AGG | 0.636800 | 5.4:-68862834 | None:intergenic |
| TGAAGAAGATGGTGTTGGTG+AGG | 0.637139 | 5.4:-68860077 | None:intergenic |
| ATTGACGACATGAAGAGGAG+TGG | 0.638509 | 5.4:-68860160 | None:intergenic |
| CCATAATGAGGGTTCAGGTG+AGG | 0.640725 | 5.4:-68860364 | None:intergenic |
| TCAAATCCATCCAACAACAA+TGG | 0.643648 | 5.4:-68860627 | None:intergenic |
| GATGAACATGGTCTCCAAAG+GGG | 0.647108 | 5.4:+68861926 | MS.gene39838:CDS |
| ACACTGAATACCTAGCAACC+TGG | 0.648317 | 5.4:-68861844 | None:intergenic |
| TGAACCCTCATTATGGTCAG+AGG | 0.648356 | 5.4:+68860371 | MS.gene39838:CDS |
| GGGAACGTGATTTGAGACGG+TGG | 0.654216 | 5.4:-68860008 | None:intergenic |
| TTCCAATGGCGACTACAGAA+GGG | 0.659674 | 5.4:+68860658 | MS.gene39838:CDS |
| GGGTATATTCAAATTCCGGT+GGG | 0.660198 | 5.4:+68860594 | MS.gene39838:CDS |
| AGCGATGAGGGAAACAATGG+CGG | 0.660738 | 5.4:-68860196 | None:intergenic |
| AGGTATGCTACCTTCCACAA+CGG | 0.666144 | 5.4:-68860415 | None:intergenic |
| GCATTGTCACTGAAACGTGA+AGG | 0.666148 | 5.4:-68862993 | None:intergenic |
| CGCGATTCGAGTGAATAGGA+AGG | 0.675620 | 5.4:-68860435 | None:intergenic |
| AGCTTCACGACGAATTGCCG+CGG | 0.679867 | 5.4:-68860478 | None:intergenic |
| GGTGAGGTGAGTTTGCGGAG+AGG | 0.683699 | 5.4:-68860348 | None:intergenic |
| GTGGAGGAGATAATACGCGA+CGG | 0.700195 | 5.4:-68860112 | None:intergenic |
| AAAGCTATATATGCTTCTGG+TGG | 0.701455 | 5.4:+68860711 | MS.gene39838:CDS |
| TCCCTCAATCCAATTAACTG+CGG | 0.724361 | 5.4:-68862707 | None:intergenic |
| TGTGAAGGGTGCAAGCAAGG+AGG | 0.729907 | 5.4:+68863182 | MS.gene39838:CDS |
| GAAGAAGGTATTGAAGACCA+AGG | 0.742555 | 5.4:+68862777 | MS.gene39838:CDS |
| TGGTGATGACGGTGTCATCG+AGG | 0.750800 | 5.4:-68860299 | None:intergenic |
| GAAGGTATTGAAGACCAAGG+TGG | 0.762853 | 5.4:+68862780 | MS.gene39838:CDS |
| GTAGTACGGGTGATGCCATG+GGG | 0.765847 | 5.4:+68861904 | MS.gene39838:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGATAAGTTAATGTAAT+TGG | - | chr5.4:68862177-68862196 | None:intergenic | 15.0% |
| !! | AACTAGAAATGTAAATAAAT+TGG | - | chr5.4:68862441-68862460 | None:intergenic | 15.0% |
| !! | CAAAAAAACATATAAAACTT+AGG | - | chr5.4:68863091-68863110 | None:intergenic | 15.0% |
| !! | TAAGATTAAAATAAACTGTA+GGG | - | chr5.4:68863042-68863061 | None:intergenic | 15.0% |
| !! | TTAAACATCAAAAAACAAAT+TGG | - | chr5.4:68861674-68861693 | None:intergenic | 15.0% |
| !! | TTAAGATTAAAATAAACTGT+AGG | - | chr5.4:68863043-68863062 | None:intergenic | 15.0% |
| !!! | CATGCTAAAATAATTTTAAT+GGG | + | chr5.4:68862607-68862626 | MS.gene39838:intron | 15.0% |
| !!! | TTTTGAATTTTGATTTTGAA+TGG | + | chr5.4:68860885-68860904 | MS.gene39838:intron | 15.0% |
| !! | ACAAGTGTAAATAATGTAAT+TGG | - | chr5.4:68862136-68862155 | None:intergenic | 20.0% |
| !! | ACTTATGAAAACAACTTATA+AGG | - | chr5.4:68861007-68861026 | None:intergenic | 20.0% |
| !! | ATAAAAGATGGATAAAATCA+AGG | - | chr5.4:68862211-68862230 | None:intergenic | 20.0% |
| !! | ATTCCATAAATTCAATACAT+CGG | + | chr5.4:68862266-68862285 | MS.gene39838:intron | 20.0% |
| !! | CTTATTATTGGTATATGAAA+GGG | + | chr5.4:68861135-68861154 | MS.gene39838:intron | 20.0% |
| !! | GAAATTGAATATGGTTTATT+GGG | + | chr5.4:68861747-68861766 | MS.gene39838:intron | 20.0% |
| !! | TAATAGTGAAGTGAAATTAT+TGG | + | chr5.4:68861243-68861262 | MS.gene39838:intron | 20.0% |
| !! | TAGAAATGTAAATAAATTGG+TGG | - | chr5.4:68862438-68862457 | None:intergenic | 20.0% |
| !! | TCTTATTATTGGTATATGAA+AGG | + | chr5.4:68861134-68861153 | MS.gene39838:intron | 20.0% |
| !! | TGAAATTATTGGTATTTGAA+AGG | + | chr5.4:68861254-68861273 | MS.gene39838:intron | 20.0% |
| !! | TGAAATTGAATATGGTTTAT+TGG | + | chr5.4:68861746-68861765 | MS.gene39838:intron | 20.0% |
| !!! | AATAATTTTAATGGGAACAT+TGG | + | chr5.4:68862615-68862634 | MS.gene39838:intron | 20.0% |
| !!! | GCATGCTAAAATAATTTTAA+TGG | + | chr5.4:68862606-68862625 | MS.gene39838:intron | 20.0% |
| !!! | TAATAATTTATGGTGAGTTT+TGG | + | chr5.4:68861785-68861804 | MS.gene39838:intron | 20.0% |
| !!! | TATCCATCTTTTATTGTTAT+AGG | + | chr5.4:68862217-68862236 | MS.gene39838:intron | 20.0% |
| !!! | TTGGATTTTGAAATTGAATA+TGG | + | chr5.4:68861738-68861757 | MS.gene39838:intron | 20.0% |
| ! | AATAAATGCTAGAACACATT+AGG | - | chr5.4:68862474-68862493 | None:intergenic | 25.0% |
| ! | AATTATGAAAATCTTGCATG+TGG | + | chr5.4:68861202-68861221 | MS.gene39838:intron | 25.0% |
| ! | AATTTGAGCAAAGAAAATAG+AGG | + | chr5.4:68861714-68861733 | MS.gene39838:intron | 25.0% |
| ! | ACAAATAAGGTAATTCAGAT+TGG | + | chr5.4:68861110-68861129 | MS.gene39838:intron | 25.0% |
| ! | ACACCTATAACAATAAAAGA+TGG | - | chr5.4:68862223-68862242 | None:intergenic | 25.0% |
| ! | ACATAAACACTTAATTAAGC+CGG | - | chr5.4:68860951-68860970 | None:intergenic | 25.0% |
| ! | ACTATCTTAATCTCCTTATT+TGG | + | chr5.4:68862561-68862580 | MS.gene39838:intron | 25.0% |
| ! | AGGAATCAAATAACCAAATA+AGG | - | chr5.4:68862577-68862596 | None:intergenic | 25.0% |
| ! | ATTATGAAAATCTTGCATGT+GGG | + | chr5.4:68861203-68861222 | MS.gene39838:intron | 25.0% |
| ! | TATGAGATTTACATGTAGTA+CGG | + | chr5.4:68861890-68861909 | MS.gene39838:CDS | 25.0% |
| !! | GAAATGAATATAGTTCTGTT+TGG | + | chr5.4:68860921-68860940 | MS.gene39838:intron | 25.0% |
| !! | TATTGGTATTTGAAAGGTAT+TGG | + | chr5.4:68861260-68861279 | MS.gene39838:intron | 25.0% |
| !! | TTCTTTAGGAAATTATTGCT+CGG | + | chr5.4:68862672-68862691 | MS.gene39838:intron | 25.0% |
| !! | TTGATTACGAAGCAATTTTA+GGG | + | chr5.4:68860550-68860569 | MS.gene39838:CDS | 25.0% |
| !! | TTTGATTACGAAGCAATTTT+AGG | + | chr5.4:68860549-68860568 | MS.gene39838:CDS | 25.0% |
| !! | TTTTCCAATTTAATAGCTCT+AGG | + | chr5.4:68863065-68863084 | MS.gene39838:intron | 25.0% |
| !!! | ATATGTTTTTTTGAACTCTC+AGG | + | chr5.4:68863098-68863117 | MS.gene39838:intron | 25.0% |
| !!! | TTATCTGCTTTTTGAGAAAA+TGG | + | chr5.4:68862360-68862379 | MS.gene39838:intron | 25.0% |
| AAAATGGTTATGCAAAAGCA+TGG | + | chr5.4:68862376-68862395 | MS.gene39838:intron | 30.0% | |
| ACACCGATGTATTGAATTTA+TGG | - | chr5.4:68862272-68862291 | None:intergenic | 30.0% | |
| ACAGTAAAAACTTTATGTCG+TGG | + | chr5.4:68861554-68861573 | MS.gene39838:intron | 30.0% | |
| AGCAATTATCAAAGAAGATG+TGG | + | chr5.4:68862753-68862772 | MS.gene39838:CDS | 30.0% | |
| ATGAGATTTACATGTAGTAC+GGG | + | chr5.4:68861891-68861910 | MS.gene39838:CDS | 30.0% | |
| ATGATCTGTTGTATTTCATG+TGG | - | chr5.4:68863314-68863333 | None:intergenic | 30.0% | |
| ATTTGAATATACGGTTCCAA+TGG | + | chr5.4:68860644-68860663 | MS.gene39838:CDS | 30.0% | |
| CACTTCACTATTAGAAACAT+TGG | - | chr5.4:68861236-68861255 | None:intergenic | 30.0% | |
| CTTCTAAACAGTGTTAATGT+TGG | + | chr5.4:68861078-68861097 | MS.gene39838:intron | 30.0% | |
| GATAAAATCAAGGATGACAA+TGG | - | chr5.4:68862201-68862220 | None:intergenic | 30.0% | |
| TCCTTTGAATTCTGATACAT+TGG | + | chr5.4:68860833-68860852 | MS.gene39838:intron | 30.0% | |
| TCGTAATCAAATCCTTCTAA+TGG | - | chr5.4:68860540-68860559 | None:intergenic | 30.0% | |
| TGTAAAGCTATATATGCTTC+TGG | + | chr5.4:68860708-68860727 | MS.gene39838:CDS | 30.0% | |
| TTCAAAAGATGCAAGTTAAC+TGG | - | chr5.4:68862535-68862554 | None:intergenic | 30.0% | |
| TTCCATCATTGTTATGCAAT+GGG | - | chr5.4:68862953-68862972 | None:intergenic | 30.0% | |
| TTGGTTGATTAGCACAAATA+AGG | + | chr5.4:68861097-68861116 | MS.gene39838:intron | 30.0% | |
| TTTAAATATCTCCGCATTTG+TGG | - | chr5.4:68861390-68861409 | None:intergenic | 30.0% | |
| ! | ACAAACAACCATCACATTTT+TGG | - | chr5.4:68862642-68862661 | None:intergenic | 30.0% |
| ! | ACTTGTTTCTTTCATGAAAG+TGG | + | chr5.4:68862150-68862169 | MS.gene39838:intron | 30.0% |
| ! | AGGTGTTATATGATTTGAAC+TGG | + | chr5.4:68862237-68862256 | MS.gene39838:intron | 30.0% |
| ! | GTTGGATGGATTTGAATATA+CGG | + | chr5.4:68860635-68860654 | MS.gene39838:CDS | 30.0% |
| ! | TATAGTTCTGTTTGGATTAC+CGG | + | chr5.4:68860929-68860948 | MS.gene39838:intron | 30.0% |
| ! | TTCAGATTGGCTCTTATTAT+TGG | + | chr5.4:68861123-68861142 | MS.gene39838:intron | 30.0% |
| ! | TTCTCAGTTGAAGTTTTTCT+TGG | + | chr5.4:68860806-68860825 | MS.gene39838:intron | 30.0% |
| ! | TTTTAGCATGCATAGATTAC+AGG | - | chr5.4:68862597-68862616 | None:intergenic | 30.0% |
| !! | TTGTACTGACTTGATTCTTT+AGG | + | chr5.4:68862658-68862677 | MS.gene39838:intron | 30.0% |
| AAAGCTATATATGCTTCTGG+TGG | + | chr5.4:68860711-68860730 | MS.gene39838:CDS | 35.0% | |
| AAATTCCATCCAAATGGCAA+CGG | - | chr5.4:68862022-68862041 | None:intergenic | 35.0% | |
| ACAAGGAAATTCCATCCAAA+TGG | - | chr5.4:68862028-68862047 | None:intergenic | 35.0% | |
| ACATTGGACCAAAAATGTGA+TGG | + | chr5.4:68862631-68862650 | MS.gene39838:intron | 35.0% | |
| ATCTACCTTCTAGGTTTCTT+CGG | + | chr5.4:68860225-68860244 | MS.gene39838:CDS | 35.0% | |
| ATGGATGTTATTGGCATATC+AGG | + | chr5.4:68861990-68862009 | MS.gene39838:CDS | 35.0% | |
| CTTCCATCATTGTTATGCAA+TGG | - | chr5.4:68862954-68862973 | None:intergenic | 35.0% | |
| CTTTGCAATATATCTGAACG+CGG | - | chr5.4:68861489-68861508 | None:intergenic | 35.0% | |
| GAGCAAAGAAAATAGAGGAT+TGG | + | chr5.4:68861719-68861738 | MS.gene39838:intron | 35.0% | |
| GCAGTAGAAAATCTAACAAC+AGG | - | chr5.4:68860777-68860796 | None:intergenic | 35.0% | |
| GCCAATGTATCAGAATTCAA+AGG | - | chr5.4:68860837-68860856 | None:intergenic | 35.0% | |
| GCTTAACTAGAGAAGAAACA+AGG | - | chr5.4:68862045-68862064 | None:intergenic | 35.0% | |
| GGAAACAATGTTACTAGCAT+GGG | - | chr5.4:68862881-68862900 | None:intergenic | 35.0% | |
| GGAATTTGAATATACCCTAC+CGG | - | chr5.4:68860591-68860610 | None:intergenic | 35.0% | |
| GGTAGGGTATATTCAAATTC+CGG | + | chr5.4:68860590-68860609 | MS.gene39838:CDS | 35.0% | |
| TAGGCCTAGAGCTATTAAAT+TGG | - | chr5.4:68863072-68863091 | None:intergenic | 35.0% | |
| TCAAATCCATCCAACAACAA+TGG | - | chr5.4:68860630-68860649 | None:intergenic | 35.0% | |
| TGAAGCACAAGCAAAACAAA+TGG | - | chr5.4:68862087-68862106 | None:intergenic | 35.0% | |
| TGGAAGACTAAATACCAAAC+AGG | - | chr5.4:68862515-68862534 | None:intergenic | 35.0% | |
| TGGTTGCTAGTACAAATAGA+GGG | + | chr5.4:68860685-68860704 | MS.gene39838:CDS | 35.0% | |
| TTCAATTGTAAACTCCGTTG+TGG | + | chr5.4:68860401-68860420 | MS.gene39838:CDS | 35.0% | |
| TTCCCATTGCATAACAATGA+TGG | + | chr5.4:68862948-68862967 | MS.gene39838:CDS | 35.0% | |
| TTGACCTGTGGCTATAAAAA+TGG | - | chr5.4:68862905-68862924 | None:intergenic | 35.0% | |
| TTGGAAGGTTTACCATTAGA+AGG | + | chr5.4:68860525-68860544 | MS.gene39838:CDS | 35.0% | |
| TTGGTTGCTAGTACAAATAG+AGG | + | chr5.4:68860684-68860703 | MS.gene39838:CDS | 35.0% | |
| TTTGCAATATATCTGAACGC+GGG | - | chr5.4:68861488-68861507 | None:intergenic | 35.0% | |
| ! | GAACTTTCAACATTTTGAGC+TGG | - | chr5.4:68862931-68862950 | None:intergenic | 35.0% |
| ! | TCAGTTGAAGTTTTTCTTGG+AGG | + | chr5.4:68860809-68860828 | MS.gene39838:intron | 35.0% |
| !! | TTAACTTGTTGTCGCGAATT+GGG | + | chr5.4:68861437-68861456 | MS.gene39838:intron | 35.0% |
| !! | TTTAACTTGTTGTCGCGAAT+TGG | + | chr5.4:68861436-68861455 | MS.gene39838:intron | 35.0% |
| !!! | GTTTTTTTGAACTCTCAGGT+GGG | + | chr5.4:68863102-68863121 | MS.gene39838:intron | 35.0% |
| !!! | TGTTTGTTTGCTGTGTTTTC+AGG | + | chr5.4:68861808-68861827 | MS.gene39838:intron | 35.0% |
| !!! | TGTTTTTTTGAACTCTCAGG+TGG | + | chr5.4:68863101-68863120 | MS.gene39838:intron | 35.0% |
| AACATGCTCAAAAACCTTGC+TGG | + | chr5.4:68862820-68862839 | MS.gene39838:CDS | 40.0% | |
| AAGGTCTCTCCCATCATTTA+CGG | - | chr5.4:68862977-68862996 | None:intergenic | 40.0% | |
| AATTGGACCACTTCCATGAA+AGG | - | chr5.4:68862119-68862138 | None:intergenic | 40.0% | |
| ACATCAGGAAGATCTTTGGA+AGG | + | chr5.4:68860510-68860529 | MS.gene39838:CDS | 40.0% | |
| ACCTGTGGCTATAAAAATGG+CGG | - | chr5.4:68862902-68862921 | None:intergenic | 40.0% | |
| ACGAACATCAGGAAGATCTT+TGG | + | chr5.4:68860506-68860525 | MS.gene39838:CDS | 40.0% | |
| ACGCGGGAAATGAATCTTTA+TGG | - | chr5.4:68861472-68861491 | None:intergenic | 40.0% | |
| AGGGTATATTCAAATTCCGG+TGG | + | chr5.4:68860593-68860612 | MS.gene39838:CDS | 40.0% | |
| AGGTAATTTCCGTTGCCATT+TGG | + | chr5.4:68862010-68862029 | MS.gene39838:intron | 40.0% | |
| ATCTTCCTCTGACCATAATG+AGG | - | chr5.4:68860379-68860398 | None:intergenic | 40.0% | |
| ATGAAAGGGATAGCTTGGTT+GGG | + | chr5.4:68861149-68861168 | MS.gene39838:intron | 40.0% | |
| ATGCCAATAACATCCATGTC+AGG | - | chr5.4:68861987-68862006 | None:intergenic | 40.0% | |
| ATTGGACCACTTCCATGAAA+GGG | - | chr5.4:68862118-68862137 | None:intergenic | 40.0% | |
| ATTGTAAACTCCGTTGTGGA+AGG | + | chr5.4:68860405-68860424 | MS.gene39838:CDS | 40.0% | |
| CAAAGAAGATGTGGTGAAGA+AGG | + | chr5.4:68862762-68862781 | MS.gene39838:CDS | 40.0% | |
| CCATGTTGTAGTTGTAACTG+AGG | - | chr5.4:68861532-68861551 | None:intergenic | 40.0% | |
| CCTCAGTTACAACTACAACA+TGG | + | chr5.4:68861529-68861548 | MS.gene39838:CDS | 40.0% | |
| CGATGTATTGTGAAGAGTTG+TGG | + | chr5.4:68861340-68861359 | MS.gene39838:intron | 40.0% | |
| CGGAAACAATGTTACTAGCA+TGG | - | chr5.4:68862882-68862901 | None:intergenic | 40.0% | |
| GAAGCTTTACAACGAACATC+AGG | + | chr5.4:68860495-68860514 | MS.gene39838:CDS | 40.0% | |
| GCTTCGTTTATCTACCTTCT+AGG | + | chr5.4:68860216-68860235 | MS.gene39838:CDS | 40.0% | |
| GGGTATATTCAAATTCCGGT+GGG | + | chr5.4:68860594-68860613 | MS.gene39838:CDS | 40.0% | |
| GGTATATGAAAGGGATAGCT+TGG | + | chr5.4:68861144-68861163 | MS.gene39838:intron | 40.0% | |
| GTAGATAAACGAAGCGATGA+GGG | - | chr5.4:68860211-68860230 | None:intergenic | 40.0% | |
| GTGAAATTGACGACATGAAG+AGG | - | chr5.4:68860168-68860187 | None:intergenic | 40.0% | |
| TAAAACAGCTCCAGCAACAA+TGG | - | chr5.4:68863238-68863257 | None:intergenic | 40.0% | |
| TATGAAAGGGATAGCTTGGT+TGG | + | chr5.4:68861148-68861167 | MS.gene39838:intron | 40.0% | |
| TCCCTCAATCCAATTAACTG+CGG | - | chr5.4:68862710-68862729 | None:intergenic | 40.0% | |
| TCGAAATGATTTCCCTGACA+TGG | + | chr5.4:68861971-68861990 | MS.gene39838:CDS | 40.0% | |
| TCTTCCTCTGACCATAATGA+GGG | - | chr5.4:68860378-68860397 | None:intergenic | 40.0% | |
| TGATGGAAGCCGTAAATGAT+GGG | + | chr5.4:68862965-68862984 | MS.gene39838:CDS | 40.0% | |
| TGCAAAATCACCTCAATGGA+TGG | - | chr5.4:68863018-68863037 | None:intergenic | 40.0% | |
| TGCCAATAACATCCATGTCA+GGG | - | chr5.4:68861986-68862005 | None:intergenic | 40.0% | |
| TGGTATTCATGACATCATGC+AGG | - | chr5.4:68862067-68862086 | None:intergenic | 40.0% | |
| TGTCAGGGAAATCATTTCGA+AGG | - | chr5.4:68861971-68861990 | None:intergenic | 40.0% | |
| TTCACACATTGTCCCTTTCA+TGG | + | chr5.4:68862103-68862122 | MS.gene39838:intron | 40.0% | |
| TTCCCTGACATGGATGTTAT+TGG | + | chr5.4:68861981-68862000 | MS.gene39838:CDS | 40.0% | |
| TTGTCGTGTCAAATCCTGTT+TGG | + | chr5.4:68862498-68862517 | MS.gene39838:intron | 40.0% | |
| ! | AATTTCCGTTGCCATTTGGA+TGG | + | chr5.4:68862014-68862033 | MS.gene39838:intron | 40.0% |
| ! | ATGATGGAAGCCGTAAATGA+TGG | + | chr5.4:68862964-68862983 | MS.gene39838:CDS | 40.0% |
| !! | GAAGAAGGTATTGAAGACCA+AGG | + | chr5.4:68862777-68862796 | MS.gene39838:CDS | 40.0% |
| !! | TTGAACATGCTTGGTGTGAA+GGG | + | chr5.4:68863168-68863187 | MS.gene39838:CDS | 40.0% |
| !!! | CATTGGCTGTTGTTTTCAAC+AGG | + | chr5.4:68860850-68860869 | MS.gene39838:intron | 40.0% |
| AAGAGTCTCGAGTTTGATCC+TGG | - | chr5.4:68863210-68863229 | None:intergenic | 45.0% | |
| ACACTGAATACCTAGCAACC+TGG | - | chr5.4:68861847-68861866 | None:intergenic | 45.0% | |
| AGAAACCTGCCGCAGTTAAT+TGG | + | chr5.4:68862698-68862717 | MS.gene39838:CDS | 45.0% | |
| AGGATCAAACTCGAGACTCT+TGG | + | chr5.4:68863209-68863228 | MS.gene39838:CDS | 45.0% | |
| AGGTATGCTACCTTCCACAA+CGG | - | chr5.4:68860418-68860437 | None:intergenic | 45.0% | |
| AGTAGATTTGCCAGGTTGCT+AGG | + | chr5.4:68861834-68861853 | MS.gene39838:CDS | 45.0% | |
| AGTGACAATGCCATCCATTG+AGG | + | chr5.4:68863005-68863024 | MS.gene39838:CDS | 45.0% | |
| AGTGTTGTGAAATGCCGGTA+GGG | + | chr5.4:68860574-68860593 | MS.gene39838:CDS | 45.0% | |
| ATTGACGACATGAAGAGGAG+TGG | - | chr5.4:68860163-68860182 | None:intergenic | 45.0% | |
| CATTGTCCCTTTCATGGAAG+TGG | + | chr5.4:68862109-68862128 | MS.gene39838:intron | 45.0% | |
| CGATACCGAAGAAACCTAGA+AGG | - | chr5.4:68860233-68860252 | None:intergenic | 45.0% | |
| CGTATTATCTCCTCCACAGA+TGG | + | chr5.4:68860118-68860137 | MS.gene39838:CDS | 45.0% | |
| CTCAGTTGTGACCACAAATG+CGG | + | chr5.4:68861376-68861395 | MS.gene39838:intron | 45.0% | |
| CTTCCTATTCACTCGAATCG+CGG | + | chr5.4:68860436-68860455 | MS.gene39838:CDS | 45.0% | |
| GATGAACATGGTCTCCAAAG+GGG | + | chr5.4:68861926-68861945 | MS.gene39838:CDS | 45.0% | |
| GCATTGTCACTGAAACGTGA+AGG | - | chr5.4:68862996-68863015 | None:intergenic | 45.0% | |
| GCCGCAGTTAATTGGATTGA+GGG | + | chr5.4:68862706-68862725 | MS.gene39838:CDS | 45.0% | |
| GCTAGGTATTCAGTGTGCTA+TGG | + | chr5.4:68861851-68861870 | MS.gene39838:CDS | 45.0% | |
| GGATGAACATGGTCTCCAAA+GGG | + | chr5.4:68861925-68861944 | MS.gene39838:CDS | 45.0% | |
| GGGATGCAAAATCACCTCAA+TGG | - | chr5.4:68863022-68863041 | None:intergenic | 45.0% | |
| GGTAGATAAACGAAGCGATG+AGG | - | chr5.4:68860212-68860231 | None:intergenic | 45.0% | |
| GTATTCAGTGTGCTATGGCT+GGG | + | chr5.4:68861856-68861875 | MS.gene39838:CDS | 45.0% | |
| GTTAATTGGATTGAGGGACG+CGG | + | chr5.4:68862712-68862731 | MS.gene39838:CDS | 45.0% | |
| TATTCAAATTCCGGTGGGTG+TGG | + | chr5.4:68860599-68860618 | MS.gene39838:CDS | 45.0% | |
| TCAATCCAATTAACTGCGGC+AGG | - | chr5.4:68862706-68862725 | None:intergenic | 45.0% | |
| TCTGACCATAATGAGGGTTC+AGG | - | chr5.4:68860372-68860391 | None:intergenic | 45.0% | |
| TCTGCTTGCTTGAACATGCT+TGG | + | chr5.4:68863159-68863178 | MS.gene39838:CDS | 45.0% | |
| TGAACCCTCATTATGGTCAG+AGG | + | chr5.4:68860371-68860390 | MS.gene39838:CDS | 45.0% | |
| TGATGTCTGCCATTGCTTCA+GGG | + | chr5.4:68863274-68863293 | MS.gene39838:CDS | 45.0% | |
| TGCCGCAGTTAATTGGATTG+AGG | + | chr5.4:68862705-68862724 | MS.gene39838:CDS | 45.0% | |
| TTAATTGGATTGAGGGACGC+GGG | + | chr5.4:68862713-68862732 | MS.gene39838:CDS | 45.0% | |
| TTCCAATGGCGACTACAGAA+GGG | + | chr5.4:68860658-68860677 | MS.gene39838:CDS | 45.0% | |
| ! | ATTTGAGACGGTGGGAATGA+GGG | - | chr5.4:68860002-68860021 | None:intergenic | 45.0% |
| ! | GAAGAAGAGCGTGAAGAAGA+TGG | - | chr5.4:68860091-68860110 | None:intergenic | 45.0% |
| ! | GAGCATGTTTAGCTCCACTA+GGG | - | chr5.4:68862809-68862828 | None:intergenic | 45.0% |
| ! | TGAGCATGTTTAGCTCCACT+AGG | - | chr5.4:68862810-68862829 | None:intergenic | 45.0% |
| !! | CTTGAACATGCTTGGTGTGA+AGG | + | chr5.4:68863167-68863186 | MS.gene39838:CDS | 45.0% |
| !! | GAAGGTATTGAAGACCAAGG+TGG | + | chr5.4:68862780-68862799 | MS.gene39838:CDS | 45.0% |
| !! | TGAAGAAGATGGTGTTGGTG+AGG | - | chr5.4:68860080-68860099 | None:intergenic | 45.0% |
| !!! | TCCGCCATTTTTATAGCCAC+AGG | + | chr5.4:68862898-68862917 | MS.gene39838:CDS | 45.0% |
| !! | ATACAAAAAATAATAATTTA+TGG | + | chr5.4:68861775-68861794 | MS.gene39838:intron | 5.0% |
| AACTCTCAGGTGGGTACAGT+AGG | + | chr5.4:68863111-68863130 | MS.gene39838:intron | 50.0% | |
| AAGAACGTTCTGCACCCCTT+TGG | - | chr5.4:68861943-68861962 | None:intergenic | 50.0% | |
| AAGGGATAGCTTGGTTGGGT+TGG | + | chr5.4:68861153-68861172 | MS.gene39838:intron | 50.0% | |
| ACGCGCTTCTCATGATGGTT+GGG | + | chr5.4:68860275-68860294 | MS.gene39838:CDS | 50.0% | |
| ACTCTCAGGTGGGTACAGTA+GGG | + | chr5.4:68863112-68863131 | MS.gene39838:intron | 50.0% | |
| AGCGATGAGGGAAACAATGG+CGG | - | chr5.4:68860199-68860218 | None:intergenic | 50.0% | |
| AGGGATAGCTTGGTTGGGTT+GGG | + | chr5.4:68861154-68861173 | MS.gene39838:intron | 50.0% | |
| AGGGCAGTGTTGTGAAATGC+CGG | + | chr5.4:68860569-68860588 | MS.gene39838:CDS | 50.0% | |
| ATGTAGTACGGGTGATGCCA+TGG | + | chr5.4:68861902-68861921 | MS.gene39838:CDS | 50.0% | |
| CAGTGTTGTGAAATGCCGGT+AGG | + | chr5.4:68860573-68860592 | MS.gene39838:CDS | 50.0% | |
| CATGAAGAGGAGTGGAGCTA+CGG | - | chr5.4:68860155-68860174 | None:intergenic | 50.0% | |
| CCATAATGAGGGTTCAGGTG+AGG | - | chr5.4:68860367-68860386 | None:intergenic | 50.0% | |
| CCTCACCTGAACCCTCATTA+TGG | + | chr5.4:68860364-68860383 | MS.gene39838:CDS | 50.0% | |
| CGAAGCGATGAGGGAAACAA+TGG | - | chr5.4:68860202-68860221 | None:intergenic | 50.0% | |
| CGCATTTGTGGTCACAACTG+AGG | - | chr5.4:68861378-68861397 | None:intergenic | 50.0% | |
| CGCGATTCGAGTGAATAGGA+AGG | - | chr5.4:68860438-68860457 | None:intergenic | 50.0% | |
| CTCTTGGCAACCATTGTTGC+TGG | + | chr5.4:68863225-68863244 | MS.gene39838:CDS | 50.0% | |
| CTGATGTCTGCCATTGCTTC+AGG | + | chr5.4:68863273-68863292 | MS.gene39838:CDS | 50.0% | |
| GAGCGTGAAGAAGATGGTGT+TGG | - | chr5.4:68860085-68860104 | None:intergenic | 50.0% | |
| GAGGGGAACGTGATTTGAGA+CGG | - | chr5.4:68860014-68860033 | None:intergenic | 50.0% | |
| GGGATGAACATGGTCTCCAA+AGG | + | chr5.4:68861924-68861943 | MS.gene39838:CDS | 50.0% | |
| GGTATTCAGTGTGCTATGGC+TGG | + | chr5.4:68861855-68861874 | MS.gene39838:CDS | 50.0% | |
| GTGGAGGAGATAATACGCGA+CGG | - | chr5.4:68860115-68860134 | None:intergenic | 50.0% | |
| GTTCAGGTGAGGTGAGTTTG+CGG | - | chr5.4:68860356-68860375 | None:intergenic | 50.0% | |
| GTTCCAATGGCGACTACAGA+AGG | + | chr5.4:68860657-68860676 | MS.gene39838:CDS | 50.0% | |
| TATTCACTCGAATCGCGGCT+GGG | + | chr5.4:68860441-68860460 | MS.gene39838:CDS | 50.0% | |
| TCAGGTCGAGTAGATTTGCC+AGG | + | chr5.4:68861826-68861845 | MS.gene39838:intron | 50.0% | |
| TGATGCCATGGGGATGAACA+TGG | + | chr5.4:68861914-68861933 | MS.gene39838:CDS | 50.0% | |
| TGTAGTACGGGTGATGCCAT+GGG | + | chr5.4:68861903-68861922 | MS.gene39838:CDS | 50.0% | |
| TTGAGCTGGATCTTGACCTG+TGG | - | chr5.4:68862917-68862936 | None:intergenic | 50.0% | |
| ! | GACTAGTTGCCCTGAAGCAA+TGG | - | chr5.4:68863286-68863305 | None:intergenic | 50.0% |
| ! | GATTTGAGACGGTGGGAATG+AGG | - | chr5.4:68860003-68860022 | None:intergenic | 50.0% |
| ! | GCATCAGAGGCTTTTGGTGA+TGG | - | chr5.4:68860039-68860058 | None:intergenic | 50.0% |
| ! | GGAACGTGATTTGAGACGGT+GGG | - | chr5.4:68860010-68860029 | None:intergenic | 50.0% |
| !! | ATGGTGTTGGTGAGGTAGAG+AGG | - | chr5.4:68860072-68860091 | None:intergenic | 50.0% |
| !! | GTTGGTAGTGGTGGTGATGA+CGG | - | chr5.4:68860313-68860332 | None:intergenic | 50.0% |
| !! | TGGTGTTGGTGAGGTAGAGA+GGG | - | chr5.4:68860071-68860090 | None:intergenic | 50.0% |
| !!! | AGGCTTTTGGTGATGGTGGA+GGG | - | chr5.4:68860032-68860051 | None:intergenic | 50.0% |
| !!! | GTTGCTGGAGCTGTTTTAGC+TGG | + | chr5.4:68863240-68863259 | MS.gene39838:CDS | 50.0% |
| !!! | TCAGAGGCTTTTGGTGATGG+TGG | - | chr5.4:68860036-68860055 | None:intergenic | 50.0% |
| AGCTTCACGACGAATTGCCG+CGG | - | chr5.4:68860481-68860500 | None:intergenic | 55.0% | |
| CACCCTTCTGTAGTCGCCAT+TGG | - | chr5.4:68860663-68860682 | None:intergenic | 55.0% | |
| CACGCGCTTCTCATGATGGT+TGG | + | chr5.4:68860274-68860293 | MS.gene39838:CDS | 55.0% | |
| CAGCAACAGCAGAACCAGCA+AGG | - | chr5.4:68862837-68862856 | None:intergenic | 55.0% | |
| CAGCCGCGATTCGAGTGAAT+AGG | - | chr5.4:68860442-68860461 | None:intergenic | 55.0% | |
| CTATTCACTCGAATCGCGGC+TGG | + | chr5.4:68860440-68860459 | MS.gene39838:CDS | 55.0% | |
| CTCTCAGGTGGGTACAGTAG+GGG | + | chr5.4:68863113-68863132 | MS.gene39838:intron | 55.0% | |
| GAGTTTGCGGAGAGGCTGAT+TGG | - | chr5.4:68860343-68860362 | None:intergenic | 55.0% | |
| GCTACACGCGCTTCTCATGA+TGG | + | chr5.4:68860270-68860289 | MS.gene39838:CDS | 55.0% | |
| GGAAACAATGGCGGCGAGTT+CGG | - | chr5.4:68860190-68860209 | None:intergenic | 55.0% | |
| GGAGACCATGTTCATCCCCA+TGG | - | chr5.4:68861922-68861941 | None:intergenic | 55.0% | |
| GGATCTTGTCACGCCATCTG+TGG | - | chr5.4:68860134-68860153 | None:intergenic | 55.0% | |
| GTAGTACGGGTGATGCCATG+GGG | + | chr5.4:68861904-68861923 | MS.gene39838:CDS | 55.0% | |
| TCAAATTCCGGTGGGTGTGG+CGG | + | chr5.4:68860602-68860621 | MS.gene39838:CDS | 55.0% | |
| TCTCAGGTGGGTACAGTAGG+GGG | + | chr5.4:68863114-68863133 | MS.gene39838:intron | 55.0% | |
| TCTGCTGTTGCTGGCACTCT+TGG | + | chr5.4:68862844-68862863 | MS.gene39838:CDS | 55.0% | |
| TCTTGTCACGCCATCTGTGG+AGG | - | chr5.4:68860131-68860150 | None:intergenic | 55.0% | |
| TGGTGAGGTAGAGAGGGAGA+GGG | - | chr5.4:68860065-68860084 | None:intergenic | 55.0% | |
| TTGGTGAGGTAGAGAGGGAG+AGG | - | chr5.4:68860066-68860085 | None:intergenic | 55.0% | |
| TTTGCGGAGAGGCTGATTGG+CGG | - | chr5.4:68860340-68860359 | None:intergenic | 55.0% | |
| ! | GCGGGACCATTGTTGTTGGA+TGG | + | chr5.4:68860621-68860640 | MS.gene39838:CDS | 55.0% |
| ! | GGGAACGTGATTTGAGACGG+TGG | - | chr5.4:68860011-68860030 | None:intergenic | 55.0% |
| ! | TGGTGTGAAGGGTGCAAGCA+AGG | + | chr5.4:68863179-68863198 | MS.gene39838:CDS | 55.0% |
| ! | TGTGAAGGGTGCAAGCAAGG+AGG | + | chr5.4:68863182-68863201 | MS.gene39838:CDS | 55.0% |
| ! | TGTGGCGGGACCATTGTTGT+TGG | + | chr5.4:68860617-68860636 | MS.gene39838:CDS | 55.0% |
| !! | ATTGGCGGTGGTGTTGGTAG+TGG | - | chr5.4:68860325-68860344 | None:intergenic | 55.0% |
| !! | CTTGCTGGTTCTGCTGTTGC+TGG | + | chr5.4:68862835-68862854 | MS.gene39838:CDS | 55.0% |
| !! | GGAATGAGGGTTGGTTGCGA+CGG | - | chr5.4:68859989-68860008 | None:intergenic | 55.0% |
| !! | GGCGACTACAGAAGGGTGTT+TGG | + | chr5.4:68860665-68860684 | MS.gene39838:CDS | 55.0% |
| !! | TGGTGATGACGGTGTCATCG+AGG | - | chr5.4:68860302-68860321 | None:intergenic | 55.0% |
| !!! | GAGGCTTTTGGTGATGGTGG+AGG | - | chr5.4:68860033-68860052 | None:intergenic | 55.0% |
| !!! | GGCTTTTGGTGATGGTGGAG+GGG | - | chr5.4:68860031-68860050 | None:intergenic | 55.0% |
| !!! | GGGAGAGCATCAGAGGCTTT+TGG | - | chr5.4:68860045-68860064 | None:intergenic | 55.0% |
| AGGCTGATTGGCGGTGGTGT+TGG | - | chr5.4:68860331-68860350 | None:intergenic | 60.0% | |
| AGGTGGGTACAGTAGGGGGT+GGG | + | chr5.4:68863118-68863137 | MS.gene39838:intron | 60.0% | |
| CAAATTCCGGTGGGTGTGGC+GGG | + | chr5.4:68860603-68860622 | MS.gene39838:CDS | 60.0% | |
| GAGACGGTGGGAATGAGGGT+TGG | - | chr5.4:68859998-68860017 | None:intergenic | 60.0% | |
| GCTGTTGCTGGCACTCTTGG+CGG | + | chr5.4:68862847-68862866 | MS.gene39838:CDS | 60.0% | |
| GGGAGATTGTTTCCGAGCCG+CGG | + | chr5.4:68860461-68860480 | MS.gene39838:CDS | 60.0% | |
| GGTGAGGTGAGTTTGCGGAG+AGG | - | chr5.4:68860351-68860370 | None:intergenic | 60.0% | |
| GGTGCAAGCAAGGAGGAACC+AGG | + | chr5.4:68863189-68863208 | MS.gene39838:CDS | 60.0% | |
| GGTGGTGACTTCGAGAGCAG+TGG | - | chr5.4:68862420-68862439 | None:intergenic | 60.0% | |
| !! | AGGGAGAGGGAGAGCATCAG+AGG | - | chr5.4:68860052-68860071 | None:intergenic | 60.0% |
| AATGGTCCCGCCACACCCAC+CGG | - | chr5.4:68860612-68860631 | None:intergenic | 65.0% | |
| CACGACGAATTGCCGCGGCT+CGG | - | chr5.4:68860476-68860495 | None:intergenic | 65.0% | |
| CAGGTGGGTACAGTAGGGGG+TGG | + | chr5.4:68863117-68863136 | MS.gene39838:intron | 65.0% | |
| CTCCACTAGGGCAGCCACCT+TGG | - | chr5.4:68862797-68862816 | None:intergenic | 65.0% | |
| GACCAAGGTGGCTGCCCTAG+TGG | + | chr5.4:68862792-68862811 | MS.gene39838:CDS | 65.0% | |
| !! | GGCGGTGGTGTTGGTAGTGG+TGG | - | chr5.4:68860322-68860341 | None:intergenic | 65.0% |
| GCGGAGAGGCTGATTGGCGG+TGG | - | chr5.4:68860337-68860356 | None:intergenic | 70.0% | |
| !! | ACGGCGCCGGTGGTGGTTTG+CGG | - | chr5.4:68859970-68859989 | None:intergenic | 70.0% |
| !! | AGGGTTGGTTGCGACGGCGC+CGG | - | chr5.4:68859983-68860002 | None:intergenic | 70.0% |
| CGGCCGCCGCAAACCACCAC+CGG | + | chr5.4:68859961-68859980 | MS.gene39838:CDS | 75.0% | |
| TTTGCGGCGGCCGGCGATGG+AGG | - | chr5.4:68859954-68859973 | None:intergenic | 75.0% | |
| ! | CGGTGGTGGTTTGCGGCGGC+CGG | - | chr5.4:68859963-68859982 | None:intergenic | 75.0% |
| ! | GCGCCGGTGGTGGTTTGCGG+CGG | - | chr5.4:68859967-68859986 | None:intergenic | 75.0% |
| ! | GTTGGTTGCGACGGCGCCGG+TGG | - | chr5.4:68859980-68859999 | None:intergenic | 75.0% |
| ! | TGGTTTGCGGCGGCCGGCGA+TGG | - | chr5.4:68859957-68859976 | None:intergenic | 75.0% |
| !!! | GGTTGCGACGGCGCCGGTGG+TGG | - | chr5.4:68859977-68859996 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 68859946 | 68863362 | 68859946 | ID=MS.gene39838 |
| chr5.4 | mRNA | 68859946 | 68863362 | 68859946 | ID=MS.gene39838.t1;Parent=MS.gene39838 |
| chr5.4 | exon | 68859946 | 68860779 | 68859946 | ID=MS.gene39838.t1.exon1;Parent=MS.gene39838.t1 |
| chr5.4 | CDS | 68859946 | 68860779 | 68859946 | ID=cds.MS.gene39838.t1;Parent=MS.gene39838.t1 |
| chr5.4 | exon | 68861477 | 68861556 | 68861477 | ID=MS.gene39838.t1.exon2;Parent=MS.gene39838.t1 |
| chr5.4 | CDS | 68861477 | 68861556 | 68861477 | ID=cds.MS.gene39838.t1;Parent=MS.gene39838.t1 |
| chr5.4 | exon | 68861830 | 68862011 | 68861830 | ID=MS.gene39838.t1.exon3;Parent=MS.gene39838.t1 |
| chr5.4 | CDS | 68861830 | 68862011 | 68861830 | ID=cds.MS.gene39838.t1;Parent=MS.gene39838.t1 |
| chr5.4 | exon | 68862680 | 68863026 | 68862680 | ID=MS.gene39838.t1.exon4;Parent=MS.gene39838.t1 |
| chr5.4 | CDS | 68862680 | 68863026 | 68862680 | ID=cds.MS.gene39838.t1;Parent=MS.gene39838.t1 |
| chr5.4 | exon | 68863120 | 68863362 | 68863120 | ID=MS.gene39838.t1.exon5;Parent=MS.gene39838.t1 |
| chr5.4 | CDS | 68863120 | 68863362 | 68863120 | ID=cds.MS.gene39838.t1;Parent=MS.gene39838.t1 |
| Gene Sequence |
| Protein sequence |
