Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39843.t1 | RHN57430.1 | 60.5 | 357 | 57 | 3 | 1 | 353 | 1 | 277 | 1.60E-89 | 339.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39843.t1 | D5K211 | 35.1 | 94 | 56 | 3 | 13 | 102 | 16 | 108 | 8.4e-07 | 56.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39843.t1 | G7KHG6 | 80.1 | 361 | 49 | 2 | 1 | 353 | 1 | 346 | 2.0e-89 | 339.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058909 | MS.gene39843 | 0.814688 | 1.36E-51 | -1.69E-46 |
| MS.gene058912 | MS.gene39843 | 0.810691 | 1.02E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39843.t1 | MTR_5g087480 | 94.618 | 353 | 12 | 3 | 1 | 353 | 1 | 346 | 0.0 | 663 |
| MS.gene39843.t1 | MTR_5g087480 | 84.703 | 353 | 10 | 4 | 1 | 353 | 1 | 309 | 0.0 | 579 |
| MS.gene39843.t1 | MTR_5g087470 | 33.333 | 348 | 143 | 11 | 1 | 342 | 1 | 265 | 8.55e-34 | 126 |
| MS.gene39843.t1 | MTR_5g087450 | 35.644 | 202 | 111 | 6 | 1 | 185 | 3 | 202 | 1.36e-25 | 103 |
| MS.gene39843.t1 | MTR_6g478190 | 32.824 | 131 | 80 | 3 | 1 | 128 | 1 | 126 | 6.51e-14 | 69.3 |
| MS.gene39843.t1 | MTR_8g046245 | 28.634 | 227 | 132 | 8 | 4 | 226 | 15 | 215 | 4.16e-13 | 70.5 |
| MS.gene39843.t1 | MTR_7g086130 | 37.209 | 86 | 52 | 1 | 10 | 93 | 8 | 93 | 2.61e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39843.t1 | AT2G27140 | 40.252 | 159 | 74 | 5 | 9 | 155 | 10 | 159 | 1.76e-26 | 105 |
| MS.gene39843.t1 | AT5G20970 | 35.227 | 176 | 108 | 5 | 10 | 183 | 7 | 178 | 1.94e-19 | 86.7 |
Find 82 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTCTCTTCTTTAGCTTT+TGG | 0.144895 | 5.4:-68776221 | None:intergenic |
| GCTTTCTCTTCTATAGCTTT+TGG | 0.148334 | 5.4:-68776455 | None:intergenic |
| AGCAATAAACTTGGCATCTT+TGG | 0.197304 | 5.4:-68776648 | None:intergenic |
| ATCTTATTGGTCGTGGGACT+TGG | 0.235571 | 5.4:+68776800 | MS.gene39843:CDS |
| TTTGGTCTTGGAGCAGCTTC+TGG | 0.245115 | 5.4:-68776161 | None:intergenic |
| TATTTATCCCATTCATGATA+TGG | 0.253330 | 5.4:-68775662 | None:intergenic |
| TTTGGTCTTGGAGCTTCTTC+TGG | 0.254733 | 5.4:-68776383 | None:intergenic |
| TTTAGTCTTGGAGCTTCTTC+TGG | 0.262302 | 5.4:-68776272 | None:intergenic |
| CTTAACATGCAGGATATAGA+AGG | 0.298323 | 5.4:+68775928 | MS.gene39843:intron |
| GTCTTTCACCTATCAGCCTT+AGG | 0.314056 | 5.4:-68775986 | None:intergenic |
| TGTGATGGTTCCTTTGGTCT+TGG | 0.318915 | 5.4:-68776173 | None:intergenic |
| CTTTATTGTAGAAATACATT+TGG | 0.339189 | 5.4:+68776824 | MS.gene39843:CDS |
| TGTGGCGATTCCTTTGGTCT+TGG | 0.352071 | 5.4:-68776395 | None:intergenic |
| GGATTTGTTGTTGTTTCCTT+AGG | 0.356840 | 5.4:-68776137 | None:intergenic |
| ATGTGTCATGCTAATCTTAT+TGG | 0.363566 | 5.4:+68776787 | MS.gene39843:CDS |
| TCATAGACACGATCAGCTTC+TGG | 0.364950 | 5.4:-68775629 | None:intergenic |
| TGTAGATTTCACTCTCTCTA+AGG | 0.366735 | 5.4:+68776688 | MS.gene39843:CDS |
| CTCTAAGGCTCTCTGTAATC+AGG | 0.374231 | 5.4:+68776703 | MS.gene39843:CDS |
| TGCGATGGTTCCTTTAGTCT+TGG | 0.384700 | 5.4:-68776284 | None:intergenic |
| AAATACATTTGGATCGTCTC+AGG | 0.407520 | 5.4:+68776835 | MS.gene39843:CDS |
| ACAAAAGGTTGATGAGCAAA+AGG | 0.416395 | 5.4:+68776193 | MS.gene39843:CDS |
| TGGATCGTCTCAGGGAGAAT+TGG | 0.416829 | 5.4:+68776844 | MS.gene39843:CDS |
| ACAAAAGGCTGATGAGCAAA+AGG | 0.421804 | 5.4:+68776415 | MS.gene39843:CDS |
| AAACCTGCCCTAAGGCTGAT+AGG | 0.427961 | 5.4:+68775978 | MS.gene39843:CDS |
| GCAAAACGTTGATGAACAAA+AGG | 0.437399 | 5.4:+68776304 | MS.gene39843:CDS |
| TCTTTCACCTATCAGCCTTA+GGG | 0.449497 | 5.4:-68775985 | None:intergenic |
| CATGCTAATCTTATTGGTCG+TGG | 0.455442 | 5.4:+68776793 | MS.gene39843:CDS |
| ACTTTGAACCATATCATGAA+TGG | 0.461998 | 5.4:+68775654 | MS.gene39843:CDS |
| CGTTTCACTGTCATGCTACC+AGG | 0.466798 | 5.4:+68775692 | MS.gene39843:CDS |
| TCTTAAGAAGTGGAAGAGAT+TGG | 0.472099 | 5.4:+68776760 | MS.gene39843:CDS |
| GCGGAGAAAGTGAGGACTAA+TGG | 0.476427 | 5.4:+68776581 | MS.gene39843:CDS |
| TGCTAAACTTACTAATCCTA+AGG | 0.484970 | 5.4:+68776121 | MS.gene39843:CDS |
| TCTTATTGGTCGTGGGACTT+GGG | 0.489096 | 5.4:+68776801 | MS.gene39843:CDS |
| CGCCATCTGTTCTGAAAGGT+TGG | 0.490011 | 5.4:-68776008 | None:intergenic |
| CAGGATGAAAATGAAGCCCT+TGG | 0.494161 | 5.4:+68776722 | MS.gene39843:CDS |
| ACCAAAGGAATCGCCACAAA+AGG | 0.496416 | 5.4:+68776400 | MS.gene39843:CDS |
| CTTTGAACCATATCATGAAT+GGG | 0.508732 | 5.4:+68775655 | MS.gene39843:CDS |
| ATGCTAATCTTATTGGTCGT+GGG | 0.509173 | 5.4:+68776794 | MS.gene39843:CDS |
| ATTGTATCATTCTCCTTCTG+TGG | 0.509921 | 5.4:-68776518 | None:intergenic |
| ACCAAAGGAACCATCACAAA+AGG | 0.514374 | 5.4:+68776178 | MS.gene39843:CDS |
| CAAATATCAGTACATCAGTA+AGG | 0.527580 | 5.4:-68776890 | None:intergenic |
| TTATTGCTAGATGCAAAACC+AGG | 0.528675 | 5.4:+68776663 | MS.gene39843:CDS |
| TTTGCATCTAGCAATAAACT+TGG | 0.529793 | 5.4:-68776657 | None:intergenic |
| CAGTGTGACTGCGACATTTG+AGG | 0.530897 | 5.4:+68776076 | MS.gene39843:CDS |
| AGAAGAGAAAGTAGAAACAA+AGG | 0.532724 | 5.4:+68776232 | MS.gene39843:CDS |
| CATGAATGGGATAAATATGA+TGG | 0.533667 | 5.4:+68775668 | MS.gene39843:CDS |
| AGTGTGACTGCGACATTTGA+GGG | 0.535084 | 5.4:+68776077 | MS.gene39843:CDS |
| TCACCTATCAGCCTTAGGGC+AGG | 0.538165 | 5.4:-68775981 | None:intergenic |
| GTGTCATAATCAGAAGGAAT+GGG | 0.540119 | 5.4:-68776050 | None:intergenic |
| GCCCTTGGAAATTCGACCAC+AGG | 0.540651 | 5.4:+68776737 | MS.gene39843:CDS |
| GAGAGTGAAATCTACAAGCC+TGG | 0.545424 | 5.4:-68776681 | None:intergenic |
| GGTCTTGGAGCAGCTTCTGG+TGG | 0.547053 | 5.4:-68776158 | None:intergenic |
| AGTCTTGGAGCTTCTTCTGG+TGG | 0.547838 | 5.4:-68776269 | None:intergenic |
| CAAAAGGCTGATGAGCAAAA+GGG | 0.548506 | 5.4:+68776416 | MS.gene39843:CDS |
| CAAAAGGTTGATGAGCAAAA+GGG | 0.551402 | 5.4:+68776194 | MS.gene39843:CDS |
| AGAAGAAGCTCCAAGACTAA+AGG | 0.551790 | 5.4:+68776274 | MS.gene39843:CDS |
| GACCTGTGGTCGAATTTCCA+AGG | 0.558465 | 5.4:-68776739 | None:intergenic |
| AGAAGAGAAAGCAGAAACAA+AGG | 0.563791 | 5.4:+68776343 | MS.gene39843:CDS |
| GACCAACCTTTCAGAACAGA+TGG | 0.572272 | 5.4:+68776006 | MS.gene39843:CDS |
| GTATCATTCTCCTTCTGTGG+TGG | 0.573843 | 5.4:-68776515 | None:intergenic |
| CTGGTAGCATGACAGTGAAA+CGG | 0.576811 | 5.4:-68775691 | None:intergenic |
| CATTCCTTCTGATTATGACA+CGG | 0.581427 | 5.4:+68776052 | MS.gene39843:CDS |
| TGACCTCAAAACCTGCCCTA+AGG | 0.581927 | 5.4:+68775970 | MS.gene39843:CDS |
| CGTGTCATAATCAGAAGGAA+TGG | 0.584263 | 5.4:-68776051 | None:intergenic |
| TTAACATGCAGGATATAGAA+GGG | 0.585688 | 5.4:+68775929 | MS.gene39843:intron |
| CAAAACGTTGATGAACAAAA+GGG | 0.585874 | 5.4:+68776305 | MS.gene39843:CDS |
| ATATAGAAGGGATCAAATGA+AGG | 0.587427 | 5.4:+68775941 | MS.gene39843:CDS |
| AATACATTTGGATCGTCTCA+GGG | 0.587906 | 5.4:+68776836 | MS.gene39843:CDS |
| ACCTGTGGTCGAATTTCCAA+GGG | 0.591551 | 5.4:-68776738 | None:intergenic |
| TCAAAAGACACCACCACAGA+AGG | 0.591734 | 5.4:+68776505 | MS.gene39843:CDS |
| CGACCACAGGTCTTAAGAAG+TGG | 0.593414 | 5.4:+68776750 | MS.gene39843:CDS |
| ACAAAGTGGCGGAGAAAGTG+AGG | 0.597287 | 5.4:+68776573 | MS.gene39843:CDS |
| GGTCTTGGAGCTTCTTCTGG+CGG | 0.600665 | 5.4:-68776380 | None:intergenic |
| CTTCCACTTCTTAAGACCTG+TGG | 0.604468 | 5.4:-68776753 | None:intergenic |
| GAGCAAAAGGGTGCTCAAGA+CGG | 0.615203 | 5.4:+68776428 | MS.gene39843:CDS |
| ACGACGCCATCTGTTCTGAA+AGG | 0.621474 | 5.4:-68776012 | None:intergenic |
| AGAAGAAGCTCCAAGACCAA+AGG | 0.632632 | 5.4:+68776385 | MS.gene39843:CDS |
| AGAAGCTAGCATAGACAAAG+TGG | 0.640905 | 5.4:+68776559 | MS.gene39843:CDS |
| AGAAGCTGCTCCAAGACCAA+AGG | 0.649599 | 5.4:+68776163 | MS.gene39843:CDS |
| CTGTCCGTGTCATAATCAGA+AGG | 0.662264 | 5.4:-68776056 | None:intergenic |
| AGCTAGCATAGACAAAGTGG+CGG | 0.665250 | 5.4:+68776562 | MS.gene39843:CDS |
| GTGACTGCGACATTTGAGGG+TGG | 0.759268 | 5.4:+68776080 | MS.gene39843:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAAAAAATGTATATTATT+TGG | - | chr5.4:68775777-68775796 | None:intergenic | 10.0% |
| !! | TCAAATTAATGAAAAACAAA+GGG | - | chr5.4:68775852-68775871 | None:intergenic | 15.0% |
| !! | TTCAAATTAATGAAAAACAA+AGG | - | chr5.4:68775853-68775872 | None:intergenic | 15.0% |
| !!! | AGTATATAGTTTGTATTTTT+TGG | - | chr5.4:68775906-68775925 | None:intergenic | 15.0% |
| !!! | TAATTCAAGTTTTTATATCT+TGG | + | chr5.4:68775722-68775741 | MS.gene39843:intron | 15.0% |
| !!! | TTTGTTTTTCATTAATTTGA+AGG | + | chr5.4:68775852-68775871 | MS.gene39843:intron | 15.0% |
| !! | CTTTATTGTAGAAATACATT+TGG | + | chr5.4:68776824-68776843 | MS.gene39843:CDS | 20.0% |
| ! | AACTTGAATTAACATTTACC+TGG | - | chr5.4:68775713-68775732 | None:intergenic | 25.0% |
| ! | TAGTTGTCTTATGAGTTATT+TGG | - | chr5.4:68775812-68775831 | None:intergenic | 25.0% |
| ! | TATATACTTTCTTAACATGC+AGG | + | chr5.4:68775918-68775937 | MS.gene39843:intron | 25.0% |
| ! | TATTTATCCCATTCATGATA+TGG | - | chr5.4:68775665-68775684 | None:intergenic | 25.0% |
| !! | AAACAAAGGGCTTTTAAATA+TGG | - | chr5.4:68775839-68775858 | None:intergenic | 25.0% |
| ACTTTGAACCATATCATGAA+TGG | + | chr5.4:68775654-68775673 | MS.gene39843:CDS | 30.0% | |
| AGAAGAGAAAGTAGAAACAA+AGG | + | chr5.4:68776232-68776251 | MS.gene39843:CDS | 30.0% | |
| ATATAGAAGGGATCAAATGA+AGG | + | chr5.4:68775941-68775960 | MS.gene39843:CDS | 30.0% | |
| ATGTGTCATGCTAATCTTAT+TGG | + | chr5.4:68776787-68776806 | MS.gene39843:CDS | 30.0% | |
| CATGAATGGGATAAATATGA+TGG | + | chr5.4:68775668-68775687 | MS.gene39843:CDS | 30.0% | |
| CTTTGAACCATATCATGAAT+GGG | + | chr5.4:68775655-68775674 | MS.gene39843:CDS | 30.0% | |
| TGCTAAACTTACTAATCCTA+AGG | + | chr5.4:68776121-68776140 | MS.gene39843:CDS | 30.0% | |
| TTAACATGCAGGATATAGAA+GGG | + | chr5.4:68775929-68775948 | MS.gene39843:intron | 30.0% | |
| TTTGCATCTAGCAATAAACT+TGG | - | chr5.4:68776660-68776679 | None:intergenic | 30.0% | |
| ! | CAAAACGTTGATGAACAAAA+GGG | + | chr5.4:68776305-68776324 | MS.gene39843:CDS | 30.0% |
| ! | CTTTCTCTTCTATAGCTTTT+GGG | - | chr5.4:68776457-68776476 | None:intergenic | 30.0% |
| ! | TTTCTCTTCTATAGCTTTTG+GGG | - | chr5.4:68776456-68776475 | None:intergenic | 30.0% |
| !!! | ACTTTCTCTTCTTTAGCTTT+TGG | - | chr5.4:68776224-68776243 | None:intergenic | 30.0% |
| !!! | CTTTCTCTTCTTTAGCTTTT+GGG | - | chr5.4:68776223-68776242 | None:intergenic | 30.0% |
| !!! | TTTCTCTTCTTTAGCTTTTG+AGG | - | chr5.4:68776222-68776241 | None:intergenic | 30.0% |
| !!! | TTTCTCTTCTTTAGCTTTTG+GGG | - | chr5.4:68776222-68776241 | None:intergenic | 30.0% |
| AAATACATTTGGATCGTCTC+AGG | + | chr5.4:68776835-68776854 | MS.gene39843:CDS | 35.0% | |
| AATACATTTGGATCGTCTCA+GGG | + | chr5.4:68776836-68776855 | MS.gene39843:CDS | 35.0% | |
| AGAAGAGAAAGCAGAAACAA+AGG | + | chr5.4:68776343-68776362 | MS.gene39843:CDS | 35.0% | |
| AGCAATAAACTTGGCATCTT+TGG | - | chr5.4:68776651-68776670 | None:intergenic | 35.0% | |
| ATGCTAATCTTATTGGTCGT+GGG | + | chr5.4:68776794-68776813 | MS.gene39843:CDS | 35.0% | |
| ATTGTATCATTCTCCTTCTG+TGG | - | chr5.4:68776521-68776540 | None:intergenic | 35.0% | |
| CATTCCTTCTGATTATGACA+CGG | + | chr5.4:68776052-68776071 | MS.gene39843:CDS | 35.0% | |
| CTTAACATGCAGGATATAGA+AGG | + | chr5.4:68775928-68775947 | MS.gene39843:intron | 35.0% | |
| GTGTCATAATCAGAAGGAAT+GGG | - | chr5.4:68776053-68776072 | None:intergenic | 35.0% | |
| TCTTAAGAAGTGGAAGAGAT+TGG | + | chr5.4:68776760-68776779 | MS.gene39843:CDS | 35.0% | |
| TGTAGATTTCACTCTCTCTA+AGG | + | chr5.4:68776688-68776707 | MS.gene39843:CDS | 35.0% | |
| TTATTGCTAGATGCAAAACC+AGG | + | chr5.4:68776663-68776682 | MS.gene39843:CDS | 35.0% | |
| ! | GCAAAACGTTGATGAACAAA+AGG | + | chr5.4:68776304-68776323 | MS.gene39843:CDS | 35.0% |
| ! | GCTTTCTCTTCTATAGCTTT+TGG | - | chr5.4:68776458-68776477 | None:intergenic | 35.0% |
| !! | ACAAAAGGTTGATGAGCAAA+AGG | + | chr5.4:68776193-68776212 | MS.gene39843:CDS | 35.0% |
| !! | CAAAAGGTTGATGAGCAAAA+GGG | + | chr5.4:68776194-68776213 | MS.gene39843:CDS | 35.0% |
| !! | GGATTTGTTGTTGTTTCCTT+AGG | - | chr5.4:68776140-68776159 | None:intergenic | 35.0% |
| !!! | AACTTGGCATCTTTGGTTTT+AGG | - | chr5.4:68776644-68776663 | None:intergenic | 35.0% |
| ACAAAAGGCTGATGAGCAAA+AGG | + | chr5.4:68776415-68776434 | MS.gene39843:CDS | 40.0% | |
| ACCAAAGGAACCATCACAAA+AGG | + | chr5.4:68776178-68776197 | MS.gene39843:CDS | 40.0% | |
| AGAAGAAGCTCCAAGACTAA+AGG | + | chr5.4:68776274-68776293 | MS.gene39843:CDS | 40.0% | |
| AGAAGCTAGCATAGACAAAG+TGG | + | chr5.4:68776559-68776578 | MS.gene39843:CDS | 40.0% | |
| CAAAAGGCTGATGAGCAAAA+GGG | + | chr5.4:68776416-68776435 | MS.gene39843:CDS | 40.0% | |
| CATGCTAATCTTATTGGTCG+TGG | + | chr5.4:68776793-68776812 | MS.gene39843:CDS | 40.0% | |
| CGTGTCATAATCAGAAGGAA+TGG | - | chr5.4:68776054-68776073 | None:intergenic | 40.0% | |
| TCTTTCACCTATCAGCCTTA+GGG | - | chr5.4:68775988-68776007 | None:intergenic | 40.0% | |
| ! | ACCTTTTGTGATGGTTCCTT+TGG | - | chr5.4:68776182-68776201 | None:intergenic | 40.0% |
| ! | AGCTTCTGTTCTGCTCTTTT+CGG | - | chr5.4:68776546-68776565 | None:intergenic | 40.0% |
| ! | TGCTCATCAACCTTTTGTGA+TGG | - | chr5.4:68776191-68776210 | None:intergenic | 40.0% |
| ! | TGTTCATCAACGTTTTGCGA+TGG | - | chr5.4:68776302-68776321 | None:intergenic | 40.0% |
| ! | TTTTGCTCATCAGCCTTTTG+TGG | - | chr5.4:68776416-68776435 | None:intergenic | 40.0% |
| !! | TTTAGTCTTGGAGCTTCTTC+TGG | - | chr5.4:68776275-68776294 | None:intergenic | 40.0% |
| ACCAAAGGAATCGCCACAAA+AGG | + | chr5.4:68776400-68776419 | MS.gene39843:CDS | 45.0% | |
| ACCTGTGGTCGAATTTCCAA+GGG | - | chr5.4:68776741-68776760 | None:intergenic | 45.0% | |
| AGAAGAAGCTCCAAGACCAA+AGG | + | chr5.4:68776385-68776404 | MS.gene39843:CDS | 45.0% | |
| AGCTAGCATAGACAAAGTGG+CGG | + | chr5.4:68776562-68776581 | MS.gene39843:CDS | 45.0% | |
| AGTGTGACTGCGACATTTGA+GGG | + | chr5.4:68776077-68776096 | MS.gene39843:CDS | 45.0% | |
| ATCTTATTGGTCGTGGGACT+TGG | + | chr5.4:68776800-68776819 | MS.gene39843:CDS | 45.0% | |
| CAGGATGAAAATGAAGCCCT+TGG | + | chr5.4:68776722-68776741 | MS.gene39843:CDS | 45.0% | |
| CTGGTAGCATGACAGTGAAA+CGG | - | chr5.4:68775694-68775713 | None:intergenic | 45.0% | |
| CTGTCCGTGTCATAATCAGA+AGG | - | chr5.4:68776059-68776078 | None:intergenic | 45.0% | |
| CTTCCACTTCTTAAGACCTG+TGG | - | chr5.4:68776756-68776775 | None:intergenic | 45.0% | |
| GACCAACCTTTCAGAACAGA+TGG | + | chr5.4:68776006-68776025 | MS.gene39843:CDS | 45.0% | |
| GAGAGTGAAATCTACAAGCC+TGG | - | chr5.4:68776684-68776703 | None:intergenic | 45.0% | |
| GTATCATTCTCCTTCTGTGG+TGG | - | chr5.4:68776518-68776537 | None:intergenic | 45.0% | |
| GTCTTTCACCTATCAGCCTT+AGG | - | chr5.4:68775989-68776008 | None:intergenic | 45.0% | |
| TCAAAAGACACCACCACAGA+AGG | + | chr5.4:68776505-68776524 | MS.gene39843:CDS | 45.0% | |
| TCATAGACACGATCAGCTTC+TGG | - | chr5.4:68775632-68775651 | None:intergenic | 45.0% | |
| TCTTATTGGTCGTGGGACTT+GGG | + | chr5.4:68776801-68776820 | MS.gene39843:CDS | 45.0% | |
| TGCGATGGTTCCTTTAGTCT+TGG | - | chr5.4:68776287-68776306 | None:intergenic | 45.0% | |
| TGTGATGGTTCCTTTGGTCT+TGG | - | chr5.4:68776176-68776195 | None:intergenic | 45.0% | |
| !! | CTCTAAGGCTCTCTGTAATC+AGG | + | chr5.4:68776703-68776722 | MS.gene39843:CDS | 45.0% |
| !! | TTTGGTCTTGGAGCTTCTTC+TGG | - | chr5.4:68776386-68776405 | None:intergenic | 45.0% |
| !! | TAAAAAAATGTATATTATTT+GGG | - | chr5.4:68775776-68775795 | None:intergenic | 5.0% |
| AAACCTGCCCTAAGGCTGAT+AGG | + | chr5.4:68775978-68775997 | MS.gene39843:CDS | 50.0% | |
| AGAAGCTGCTCCAAGACCAA+AGG | + | chr5.4:68776163-68776182 | MS.gene39843:CDS | 50.0% | |
| AGTCTTGGAGCTTCTTCTGG+TGG | - | chr5.4:68776272-68776291 | None:intergenic | 50.0% | |
| CAGTGTGACTGCGACATTTG+AGG | + | chr5.4:68776076-68776095 | MS.gene39843:CDS | 50.0% | |
| CGACCACAGGTCTTAAGAAG+TGG | + | chr5.4:68776750-68776769 | MS.gene39843:CDS | 50.0% | |
| CGTTTCACTGTCATGCTACC+AGG | + | chr5.4:68775692-68775711 | MS.gene39843:CDS | 50.0% | |
| GACCTGTGGTCGAATTTCCA+AGG | - | chr5.4:68776742-68776761 | None:intergenic | 50.0% | |
| GCGGAGAAAGTGAGGACTAA+TGG | + | chr5.4:68776581-68776600 | MS.gene39843:CDS | 50.0% | |
| TGACCTCAAAACCTGCCCTA+AGG | + | chr5.4:68775970-68775989 | MS.gene39843:CDS | 50.0% | |
| TGGATCGTCTCAGGGAGAAT+TGG | + | chr5.4:68776844-68776863 | MS.gene39843:CDS | 50.0% | |
| TGTGGCGATTCCTTTGGTCT+TGG | - | chr5.4:68776398-68776417 | None:intergenic | 50.0% | |
| ! | ACAAAGTGGCGGAGAAAGTG+AGG | + | chr5.4:68776573-68776592 | MS.gene39843:CDS | 50.0% |
| ! | ACGACGCCATCTGTTCTGAA+AGG | - | chr5.4:68776015-68776034 | None:intergenic | 50.0% |
| ! | GCCTTTTGTGGCGATTCCTT+TGG | - | chr5.4:68776404-68776423 | None:intergenic | 50.0% |
| !! | CGCCATCTGTTCTGAAAGGT+TGG | - | chr5.4:68776011-68776030 | None:intergenic | 50.0% |
| !! | GAGCAAAAGGGTGCTCAAGA+CGG | + | chr5.4:68776428-68776447 | MS.gene39843:CDS | 50.0% |
| !! | TTTGGTCTTGGAGCAGCTTC+TGG | - | chr5.4:68776164-68776183 | None:intergenic | 50.0% |
| GCCCTTGGAAATTCGACCAC+AGG | + | chr5.4:68776737-68776756 | MS.gene39843:CDS | 55.0% | |
| GGTCTTGGAGCTTCTTCTGG+CGG | - | chr5.4:68776383-68776402 | None:intergenic | 55.0% | |
| GTGACTGCGACATTTGAGGG+TGG | + | chr5.4:68776080-68776099 | MS.gene39843:CDS | 55.0% | |
| TCACCTATCAGCCTTAGGGC+AGG | - | chr5.4:68775984-68776003 | None:intergenic | 55.0% | |
| ! | CAGCCTTAGGGCAGGTTTTG+AGG | - | chr5.4:68775976-68775995 | None:intergenic | 55.0% |
| GGTCTTGGAGCAGCTTCTGG+TGG | - | chr5.4:68776161-68776180 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 68775611 | 68776898 | 68775611 | ID=MS.gene39843 |
| chr5.4 | mRNA | 68775611 | 68776898 | 68775611 | ID=MS.gene39843.t1;Parent=MS.gene39843 |
| chr5.4 | exon | 68775611 | 68775713 | 68775611 | ID=MS.gene39843.t1.exon1;Parent=MS.gene39843.t1 |
| chr5.4 | CDS | 68775611 | 68775713 | 68775611 | ID=cds.MS.gene39843.t1;Parent=MS.gene39843.t1 |
| chr5.4 | exon | 68775940 | 68776898 | 68775940 | ID=MS.gene39843.t1.exon2;Parent=MS.gene39843.t1 |
| chr5.4 | CDS | 68775940 | 68776898 | 68775940 | ID=cds.MS.gene39843.t1;Parent=MS.gene39843.t1 |
| Gene Sequence |
| Protein sequence |
