AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene40288

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40288.t1 MTR_3g109650 94.014 568 34 0 1 568 1 568 0.0 1101
MS.gene40288.t1 MTR_3g109650 94.348 460 26 0 109 568 11 470 0.0 892
MS.gene40288.t1 MTR_1g006695 62.931 464 149 9 1 458 1 447 0.0 576
MS.gene40288.t1 MTR_3g096780 27.897 466 269 17 1 464 4 404 6.18e-34 134
MS.gene40288.t1 MTR_8g094410 29.655 435 243 17 17 449 15 388 6.84e-34 134
MS.gene40288.t1 MTR_8g094410 26.733 303 174 8 16 317 119 374 3.54e-19 90.9
MS.gene40288.t1 MTR_8g094410 29.655 435 243 17 17 449 15 388 9.09e-34 133
MS.gene40288.t1 MTR_8g094410 26.733 303 174 8 16 317 119 374 1.21e-18 89.0
MS.gene40288.t1 MTR_8g094410 29.787 376 206 16 78 449 18 339 1.82e-26 112
MS.gene40288.t1 MTR_8g094410 28.487 337 184 12 17 346 15 301 7.01e-19 89.4
MS.gene40288.t1 MTR_8g094410 27.686 242 134 6 16 254 122 325 5.49e-18 86.7
MS.gene40288.t1 MTR_7g016640 27.945 433 217 22 35 433 22 393 2.39e-26 111
MS.gene40288.t1 MTR_7g016640 26.902 368 184 17 10 346 57 370 1.60e-13 73.2
MS.gene40288.t1 MTR_7g016640 27.945 433 217 22 35 433 22 393 2.78e-26 112
MS.gene40288.t1 MTR_7g016640 26.902 368 184 17 10 346 57 370 1.27e-13 73.6
MS.gene40288.t1 MTR_8g094410 29.521 376 207 16 78 449 18 339 3.82e-26 110
MS.gene40288.t1 MTR_8g094410 29.499 339 178 14 17 346 15 301 2.88e-18 87.0
MS.gene40288.t1 MTR_8g094410 28.033 239 131 6 16 251 122 322 8.45e-18 85.5
MS.gene40288.t1 MTR_3g064560 26.286 350 213 11 17 359 306 617 1.49e-24 109
MS.gene40288.t1 MTR_3g064560 24.534 322 171 11 16 317 357 626 7.50e-13 72.0
MS.gene40288.t1 MTR_3g064560 27.076 277 146 10 17 278 413 648 1.18e-12 71.6
MS.gene40288.t1 MTR_8g094410 32.075 265 146 10 185 449 24 254 2.10e-24 104
MS.gene40288.t1 MTR_8g094410 27.686 242 134 6 16 254 37 240 1.11e-18 87.4
MS.gene40288.t1 MTR_8g094410 26.855 283 159 8 36 317 5 240 1.45e-16 81.3
MS.gene40288.t1 MTR_8g094410 32.661 248 133 10 202 449 2 215 1.25e-22 98.2
MS.gene40288.t1 MTR_8g094410 27.731 238 131 6 20 254 2 201 1.57e-18 86.3
MS.gene40288.t1 MTR_0024s0070 25.672 409 227 17 35 431 4 347 3.36e-20 93.6
MS.gene40288.t1 MTR_0024s0070 26.667 300 156 9 8 288 142 396 8.88e-16 80.1
MS.gene40288.t1 MTR_4g029410 25.185 405 244 15 34 432 35 386 7.41e-20 94.4
MS.gene40288.t1 MTR_4g029410 24.490 343 200 12 17 346 68 364 8.14e-18 87.8
MS.gene40288.t1 MTR_4g029410 25.824 364 201 15 10 353 115 429 2.45e-13 73.6
MS.gene40288.t1 MTR_4g029410 26.846 298 172 13 152 438 24 286 3.55e-11 66.6
MS.gene40288.t1 MTR_3g097060 28.779 344 186 13 14 346 67 362 2.11e-19 90.9
MS.gene40288.t1 MTR_3g097060 28.021 389 205 15 39 414 40 366 4.64e-15 77.8
MS.gene40288.t1 MTR_3g097060 28.779 344 186 13 14 346 67 362 2.93e-19 90.9
MS.gene40288.t1 MTR_3g097060 27.492 331 195 12 16 336 121 416 2.68e-18 87.8
MS.gene40288.t1 MTR_3g097060 27.336 428 224 16 39 441 40 405 3.72e-17 84.3
MS.gene40288.t1 MTR_5g089900 25.148 338 205 10 17 346 327 624 1.25e-18 90.5
MS.gene40288.t1 MTR_5g089900 25.666 413 231 16 48 447 306 655 3.71e-17 85.9
MS.gene40288.t1 MTR_0095s0070 30.314 287 150 13 34 317 27 266 1.54e-18 86.3
MS.gene40288.t1 MTR_0095s0070 28.295 258 150 11 103 349 12 245 7.08e-12 66.6
MS.gene40288.t1 MTR_0095s0070 32.716 162 92 6 291 451 32 177 6.36e-11 63.9
MS.gene40288.t1 MTR_3g113250 24.339 378 210 12 13 342 56 405 5.01e-18 87.8
MS.gene40288.t1 MTR_5g020630 24.826 431 218 15 75 454 63 438 5.24e-18 87.0
MS.gene40288.t1 MTR_1g042800 23.669 338 206 10 20 346 264 560 8.84e-18 87.8
MS.gene40288.t1 MTR_1g042800 27.036 307 181 12 149 445 316 589 4.38e-16 82.4
MS.gene40288.t1 MTR_1g042800 26.148 283 169 8 15 289 366 616 8.07e-15 78.6
MS.gene40288.t1 MTR_1g042800 25.430 291 171 11 159 431 215 477 9.91e-11 65.5
MS.gene40288.t1 MTR_3g069030 26.131 398 213 13 66 431 91 439 1.38e-17 85.9
MS.gene40288.t1 MTR_3g069030 28.195 266 162 10 73 333 215 456 1.44e-12 70.5
MS.gene40288.t1 MTR_1g099220 24.484 339 206 12 17 346 281 578 7.85e-17 84.7
MS.gene40288.t1 MTR_1g099220 25.581 430 244 18 34 445 236 607 3.45e-15 79.7
MS.gene40288.t1 MTR_1g099220 26.780 295 161 12 160 431 233 495 8.04e-14 75.1
MS.gene40288.t1 MTR_7g063440 24.870 386 221 13 75 431 20 365 9.54e-17 82.8
MS.gene40288.t1 MTR_7g063440 25.419 358 166 15 54 402 123 388 3.83e-15 77.8
MS.gene40288.t1 MTR_7g063440 26.871 294 157 9 8 278 130 388 1.09e-11 67.4
MS.gene40288.t1 MTR_7g072410 25.814 430 239 18 34 445 224 591 1.51e-16 84.0
MS.gene40288.t1 MTR_7g072410 23.167 341 207 11 17 346 266 562 2.76e-15 80.1
MS.gene40288.t1 MTR_7g072410 22.747 466 274 19 17 448 318 731 1.18e-13 74.7
MS.gene40288.t1 MTR_7g072410 24.483 290 172 9 159 431 220 479 7.36e-12 68.9
MS.gene40288.t1 MTR_7g063440 24.742 388 223 13 73 431 110 457 1.90e-16 82.8
MS.gene40288.t1 MTR_7g063440 25.419 358 166 15 54 402 215 480 6.10e-15 77.8
MS.gene40288.t1 MTR_7g063440 26.871 294 157 9 8 278 222 480 1.58e-11 67.0
MS.gene40288.t1 MTR_2g079610 26.733 303 170 10 19 314 220 477 4.95e-16 81.3
MS.gene40288.t1 MTR_2g079610 36.190 105 58 2 3 102 252 352 9.00e-11 64.7
MS.gene40288.t1 MTR_3g086300 23.645 406 257 15 22 418 153 514 1.49e-15 80.1
MS.gene40288.t1 MTR_6g034795 23.714 350 184 8 20 317 281 599 1.78e-14 77.4
MS.gene40288.t1 MTR_6g034795 25.298 419 253 16 36 445 237 604 3.72e-14 76.3
MS.gene40288.t1 MTR_6g034795 24.913 289 172 8 160 431 232 492 8.12e-13 72.0
MS.gene40288.t1 MTR_5g038220 24.570 407 233 15 36 431 16 359 7.24e-12 67.8
MS.gene40288.t1 MTR_7g063440 25.260 289 135 12 54 337 215 427 1.20e-11 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40288.t1 AT5G11580 53.451 565 228 10 11 568 12 548 0.0 592
MS.gene40288.t1 AT5G11580 53.791 422 163 8 154 568 1 397 4.47e-153 445
MS.gene40288.t1 AT5G63860 28.375 437 251 16 15 449 15 391 6.77e-36 140
MS.gene40288.t1 AT5G63860 29.348 368 199 14 3 358 51 369 7.83e-27 114
MS.gene40288.t1 AT5G63860 28.526 312 176 9 8 317 111 377 1.18e-23 104
MS.gene40288.t1 AT3G02300 30.536 429 211 23 35 433 32 403 5.02e-26 112
MS.gene40288.t1 AT3G02300 30.536 429 211 23 35 433 21 392 5.64e-26 111
MS.gene40288.t1 AT5G16040 26.869 428 236 18 35 452 6 366 6.85e-26 110
MS.gene40288.t1 AT5G16040 28.406 345 175 13 17 346 40 327 2.48e-19 90.9
MS.gene40288.t1 AT5G16040 25.649 308 175 9 16 279 92 389 1.89e-14 75.9
MS.gene40288.t1 AT5G16040 33.125 160 90 6 6 159 237 385 5.11e-11 65.1
MS.gene40288.t1 AT5G48330 26.952 397 202 12 75 431 84 432 3.70e-22 100
MS.gene40288.t1 AT5G48330 26.448 397 203 11 75 431 84 431 3.88e-22 100
MS.gene40288.t1 AT3G02510 26.869 428 238 21 35 453 6 367 9.39e-22 98.2
MS.gene40288.t1 AT3G02510 26.866 335 197 13 15 346 38 327 1.75e-18 88.2
MS.gene40288.t1 AT3G02510 23.003 313 183 8 16 282 92 392 4.69e-14 74.7
MS.gene40288.t1 AT5G60870 28.530 347 185 13 18 353 104 398 1.30e-21 98.2
MS.gene40288.t1 AT5G60870 28.251 223 122 6 3 214 247 442 2.54e-11 66.6
MS.gene40288.t1 AT5G42140 26.113 337 197 12 20 346 282 576 3.15e-20 95.9
MS.gene40288.t1 AT5G42140 24.711 433 248 16 34 447 234 607 2.44e-16 83.2
MS.gene40288.t1 AT5G42140 26.531 294 170 12 158 431 226 493 1.51e-12 71.2
MS.gene40288.t1 AT5G42140 26.113 337 197 12 20 346 282 576 3.15e-20 95.9
MS.gene40288.t1 AT5G42140 24.711 433 248 16 34 447 234 607 2.44e-16 83.2
MS.gene40288.t1 AT5G42140 26.531 294 170 12 158 431 226 493 1.51e-12 71.2
MS.gene40288.t1 AT5G60870 28.045 353 186 13 18 353 104 405 5.27e-20 93.6
MS.gene40288.t1 AT5G16040 26.814 317 178 11 35 346 6 273 3.93e-19 89.4
MS.gene40288.t1 AT5G16040 28.302 318 162 12 17 325 40 300 1.00e-16 82.4
MS.gene40288.t1 AT5G60870 29.582 311 157 12 18 317 104 363 6.66e-19 89.4
MS.gene40288.t1 AT5G60870 27.341 267 163 8 9 275 146 381 7.18e-17 83.2
MS.gene40288.t1 AT5G19420 25.220 341 200 10 17 346 314 610 7.55e-19 91.3
MS.gene40288.t1 AT5G19420 26.426 333 208 12 20 351 369 665 3.50e-18 89.4
MS.gene40288.t1 AT5G19420 25.122 410 228 15 52 447 297 641 9.73e-17 84.7
MS.gene40288.t1 AT5G19420 25.342 292 155 11 17 289 419 666 1.33e-15 80.9
MS.gene40288.t1 AT5G19420 25.220 341 200 10 17 346 348 644 9.11e-19 91.3
MS.gene40288.t1 AT5G19420 26.426 333 208 12 20 351 403 699 3.74e-18 89.4
MS.gene40288.t1 AT5G19420 25.122 410 228 15 52 447 331 675 1.03e-16 84.7
MS.gene40288.t1 AT5G19420 25.342 292 155 11 17 289 453 700 1.46e-15 80.9
MS.gene40288.t1 AT4G14368 26.205 332 208 9 17 346 272 568 1.13e-18 90.9
MS.gene40288.t1 AT4G14368 29.508 305 177 13 149 447 327 599 2.01e-18 90.1
MS.gene40288.t1 AT4G14368 23.793 290 174 10 159 431 226 485 1.05e-12 71.6
MS.gene40288.t1 AT3G23270 25.148 338 204 10 17 346 257 553 1.21e-18 90.5
MS.gene40288.t1 AT3G23270 26.014 419 256 15 34 447 215 584 2.61e-17 86.3
MS.gene40288.t1 AT4G14368 26.444 329 205 9 20 346 273 566 1.38e-18 90.5
MS.gene40288.t1 AT4G14368 29.508 305 177 13 149 447 325 597 2.70e-18 89.7
MS.gene40288.t1 AT4G14368 23.793 290 174 10 159 431 224 483 1.80e-12 70.9
MS.gene40288.t1 AT4G14368 26.444 329 205 9 20 346 275 568 1.38e-18 90.5
MS.gene40288.t1 AT4G14368 29.508 305 177 13 149 447 327 599 2.46e-18 89.7
MS.gene40288.t1 AT4G14368 23.793 290 174 10 159 431 226 485 1.70e-12 71.2
MS.gene40288.t1 AT4G14368 26.444 329 205 9 20 346 268 561 1.40e-18 90.5
MS.gene40288.t1 AT4G14368 29.508 305 177 13 149 447 320 592 2.84e-18 89.4
MS.gene40288.t1 AT4G14368 23.793 290 174 10 159 431 219 478 1.77e-12 70.9
MS.gene40288.t1 AT3G23270 25.148 338 204 10 17 346 253 549 1.53e-18 90.5
MS.gene40288.t1 AT3G23270 26.014 419 256 15 34 447 211 580 2.96e-17 86.3
MS.gene40288.t1 AT1G65920 25.510 392 229 14 48 431 227 563 1.90e-18 90.1
MS.gene40288.t1 AT1G65920 23.670 376 221 11 5 358 227 558 1.63e-16 84.0
MS.gene40288.t1 AT1G65920 24.315 292 158 10 17 289 351 598 3.77e-11 66.6
MS.gene40288.t1 AT5G19420 25.220 341 200 10 17 346 314 610 1.98e-18 89.7
MS.gene40288.t1 AT5G19420 25.826 333 210 11 20 351 369 665 3.74e-18 89.0
MS.gene40288.t1 AT5G19420 25.307 407 231 17 52 447 297 641 1.66e-16 84.0
MS.gene40288.t1 AT5G19420 25.342 292 155 11 17 289 419 666 2.25e-15 80.1
MS.gene40288.t1 AT1G65920 25.700 393 227 15 48 431 273 609 2.02e-18 90.1
MS.gene40288.t1 AT1G65920 23.670 376 221 11 5 358 273 604 1.61e-16 84.0
MS.gene40288.t1 AT1G65920 24.315 292 158 10 17 289 397 644 3.80e-11 66.6
MS.gene40288.t1 AT1G69710 27.119 354 206 12 10 351 291 604 3.75e-18 89.0
MS.gene40288.t1 AT1G69710 23.264 288 167 9 17 289 409 657 8.08e-13 72.0
MS.gene40288.t1 AT1G69710 27.119 354 206 12 10 351 278 591 3.86e-18 89.0
MS.gene40288.t1 AT1G69710 23.264 288 167 9 17 289 396 644 7.71e-13 72.0
MS.gene40288.t1 AT5G12350 25.558 403 235 16 52 447 293 637 6.20e-18 88.6
MS.gene40288.t1 AT5G12350 25.526 333 211 11 20 351 365 661 6.77e-18 88.2
MS.gene40288.t1 AT5G12350 24.716 352 206 11 10 346 299 606 1.86e-17 87.0
MS.gene40288.t1 AT5G12350 25.784 287 160 11 17 289 415 662 1.15e-14 78.2
MS.gene40288.t1 AT3G15430 27.907 301 168 9 19 314 220 476 1.03e-17 86.7
MS.gene40288.t1 AT3G15430 40.000 105 56 3 17 120 271 369 4.92e-12 68.9
MS.gene40288.t1 AT3G15430 27.907 301 168 9 19 314 220 476 1.03e-17 86.7
MS.gene40288.t1 AT3G15430 40.000 105 56 3 17 120 271 369 4.92e-12 68.9
MS.gene40288.t1 AT3G15430 27.907 301 168 9 19 314 220 476 1.03e-17 86.7
MS.gene40288.t1 AT3G15430 40.000 105 56 3 17 120 271 369 4.92e-12 68.9
MS.gene40288.t1 AT3G15430 27.907 301 168 9 19 314 220 476 1.03e-17 86.7
MS.gene40288.t1 AT3G15430 40.000 105 56 3 17 120 271 369 4.92e-12 68.9
MS.gene40288.t1 AT3G15430 27.907 301 168 9 19 314 220 476 1.03e-17 86.7
MS.gene40288.t1 AT3G15430 40.000 105 56 3 17 120 271 369 4.92e-12 68.9
MS.gene40288.t1 AT3G15430 27.907 301 168 9 19 314 220 476 1.03e-17 86.7
MS.gene40288.t1 AT3G15430 40.000 105 56 3 17 120 271 369 4.92e-12 68.9
MS.gene40288.t1 AT5G08710 25.926 405 239 14 39 431 54 409 5.23e-17 84.0
MS.gene40288.t1 AT5G08710 27.844 334 196 12 13 336 132 430 2.22e-14 75.9
MS.gene40288.t1 AT5G08710 26.608 342 194 12 15 346 82 376 9.30e-14 73.9
MS.gene40288.t1 AT3G26100 24.694 409 251 16 22 419 50 412 3.26e-16 81.6
MS.gene40288.t1 AT3G26100 24.694 409 251 16 22 419 50 412 3.26e-16 81.6
MS.gene40288.t1 AT3G26100 24.694 409 251 16 22 419 50 412 3.26e-16 81.6
MS.gene40288.t1 AT3G26100 24.818 411 248 17 22 419 150 512 3.80e-16 82.0
MS.gene40288.t1 AT3G26100 24.818 411 248 17 22 419 150 512 3.80e-16 82.0
MS.gene40288.t1 AT3G26100 24.818 411 248 17 22 419 150 512 3.80e-16 82.0
MS.gene40288.t1 AT3G53830 29.044 272 161 11 73 333 214 464 4.25e-16 81.6
MS.gene40288.t1 AT3G53830 24.533 428 241 15 8 431 98 447 1.78e-13 73.2
MS.gene40288.t1 AT3G53830 26.990 289 154 11 13 276 212 468 5.26e-13 72.0
MS.gene40288.t1 AT3G02510 27.164 335 193 17 129 453 16 309 4.98e-16 80.1
MS.gene40288.t1 AT3G02510 27.389 314 180 13 36 346 1 269 1.35e-15 78.6
MS.gene40288.t1 AT3G02510 24.828 290 145 10 17 282 94 334 4.70e-13 70.9
MS.gene40288.t1 AT3G53830 29.044 272 161 11 73 333 242 492 5.08e-16 81.3
MS.gene40288.t1 AT3G53830 26.990 289 154 11 13 276 240 496 4.86e-13 72.0
MS.gene40288.t1 AT3G53830 26.000 300 168 11 132 431 230 475 2.42e-12 69.7
MS.gene40288.t1 AT3G02510 26.923 312 178 12 15 325 38 300 7.48e-16 79.3
MS.gene40288.t1 AT3G02510 26.582 316 180 14 35 346 6 273 3.20e-15 77.4
MS.gene40288.t1 AT3G55580 29.457 258 133 8 196 431 233 463 3.42e-15 79.0
MS.gene40288.t1 AT3G55580 27.437 277 155 12 73 333 234 480 3.34e-13 72.4
MS.gene40288.t1 AT3G55580 27.083 288 144 12 144 401 234 485 3.62e-12 69.3
MS.gene40288.t1 AT3G47660 24.933 373 194 10 14 336 295 631 1.72e-14 77.4
MS.gene40288.t1 AT3G47660 27.347 245 144 8 182 420 284 500 8.91e-11 65.5
MS.gene40288.t1 AT3G47660 24.933 373 194 10 14 336 295 631 2.15e-14 77.0
MS.gene40288.t1 AT3G47660 24.933 373 194 10 14 336 292 628 2.45e-14 77.0
MS.gene40288.t1 AT3G47660 24.933 373 194 10 14 336 292 628 2.45e-14 77.0
MS.gene40288.t1 AT3G47660 25.201 373 193 11 14 336 331 667 2.87e-14 76.6
MS.gene40288.t1 AT3G47660 25.469 373 192 11 14 336 150 486 2.87e-14 76.6
MS.gene40288.t1 AT3G47660 24.933 373 194 10 14 336 217 553 3.36e-14 76.3
MS.gene40288.t1 AT1G76950 21.818 385 211 9 10 336 272 624 7.23e-14 75.5
MS.gene40288.t1 AT1G76950 25.366 410 192 17 92 431 238 603 3.83e-13 73.2
MS.gene40288.t1 AT1G76950 25.676 296 165 11 160 431 235 499 4.28e-12 69.7
MS.gene40288.t1 AT5G08710 27.419 310 184 11 39 346 54 324 1.40e-13 72.8
MS.gene40288.t1 AT5G08710 25.676 296 166 9 15 301 82 332 8.48e-11 64.3
MS.gene40288.t1 AT1G19880 22.955 379 214 14 16 342 59 411 3.36e-13 72.8
MS.gene40288.t1 AT1G19880 25.347 288 169 11 143 411 57 317 1.28e-11 67.8
MS.gene40288.t1 AT5G60870 28.251 223 122 6 3 214 78 273 8.92e-12 66.2
MS.gene40288.t1 AT5G60870 26.957 230 131 7 135 353 26 229 2.20e-11 65.1
MS.gene40288.t1 AT3G03790 25.490 204 118 5 13 214 291 462 4.17e-11 66.6
MS.gene40288.t1 AT3G03790 25.490 204 118 5 13 214 294 465 4.51e-11 66.6
MS.gene40288.t1 AT3G03790 25.490 204 118 5 13 214 294 465 5.29e-11 66.2

Find 168 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGTTTCTGCTATTATTTC+GGG 0.152473 3.3:+90885936 None:intergenic
ATCTGTTTCTGCTATTATTT+CGG 0.168624 3.3:+90885935 None:intergenic
CATTGTGGCAATTCTTTAAT+AGG 0.205233 3.3:+90886374 None:intergenic
GGGATATCTTGCTCATTAAA+AGG 0.234552 3.3:+90885810 None:intergenic
CCCTGTTTCAATGCAGAATT+CGG 0.240289 3.3:-90885790 MS.gene40288:CDS
TATCATAGTCTTGCTCTTGC+AGG 0.269551 3.3:-90888835 MS.gene40288:intron
CACCTTCTTTGCTTTCTTGT+GGG 0.270672 3.3:+90886798 None:intergenic
AAAAGACTCCAAGCATATTA+AGG 0.307233 3.3:+90887218 None:intergenic
TCACACACTCTTCTTCTTAC+TGG 0.316495 3.3:-90889124 MS.gene40288:intron
AGATGGGTCTGTTGAAGAAT+TGG 0.319222 3.3:+90887016 None:intergenic
AGCCATGGCCAATTAGGTTT+GGG 0.319335 3.3:-90886614 MS.gene40288:CDS
AATTATTTATTTACCAAGAT+TGG 0.322207 3.3:+90885613 None:intergenic
ACAAGTGTTGTGTCCTCAAC+TGG 0.324550 3.3:-90886314 MS.gene40288:CDS
TATAACAGCCATGGCCAATT+AGG 0.326743 3.3:-90886620 MS.gene40288:CDS
CCCGAATTCTGCATTGAAAC+AGG 0.327945 3.3:+90885789 None:intergenic
TCAAACAAAGCTATCTATAA+TGG 0.330445 3.3:-90885874 MS.gene40288:CDS
AAAGATCAAAGAAATTATAA+AGG 0.357258 3.3:-90885643 MS.gene40288:CDS
CAACTGGGGACGTGTGGTCA+TGG 0.360607 3.3:-90886298 MS.gene40288:CDS
GGGACATAAGGTGTGGTCTT+GGG 0.367064 3.3:-90886105 MS.gene40288:CDS
CTCAACTTTGGAAATCCTAA+TGG 0.367861 3.3:-90888901 MS.gene40288:CDS
CAGCCATGGCCAATTAGGTT+TGG 0.369616 3.3:-90886615 MS.gene40288:CDS
TAGTTCCTTGCTTACTTAGC+AGG 0.373149 3.3:-90887058 MS.gene40288:CDS
CGCCCCACACACAACTTTAA+CGG 0.376768 3.3:+90886154 None:intergenic
ACCTTTGGCCTTGGTGAGAA+TGG 0.379729 3.3:-90886440 MS.gene40288:CDS
TCTTTGAGACCCTCAATTGT+TGG 0.379777 3.3:+90886008 None:intergenic
GAAAGCATGTGCTGGACCTT+TGG 0.382764 3.3:-90886455 MS.gene40288:CDS
CAGATGATAGGAAGCTAGTT+AGG 0.383103 3.3:-90885722 MS.gene40288:CDS
ATCTTGTGTGATAGCTTGTC+GGG 0.383429 3.3:+90889169 None:intergenic
CTCTGGCTATTGATAATTGC+GGG 0.385453 3.3:-90886844 MS.gene40288:CDS
GCCCCACACACAACTTTAAC+GGG 0.386125 3.3:+90886155 None:intergenic
AATGCAGAATTCGGGTTCAA+TGG 0.388876 3.3:-90885781 MS.gene40288:CDS
TGTGATAGCTTGTCGGGGTT+CGG 0.391434 3.3:+90889175 None:intergenic
AGAGGAATGTTTGGACGGCT+TGG 0.396014 3.3:-90888961 MS.gene40288:CDS
CCTGTTTCAATGCAGAATTC+GGG 0.396597 3.3:-90885789 MS.gene40288:CDS
TCTTGGGGTAGGGGAAGGAG+TGG 0.407624 3.3:-90886089 MS.gene40288:CDS
AAAATCTACTATGCTACTCT+TGG 0.414016 3.3:-90886646 MS.gene40288:CDS
GTCGGGGTTCGGATAACTTC+CGG 0.414083 3.3:+90889186 None:intergenic
AATCGTGCTGAAACAAATTC+TGG 0.415541 3.3:-90886239 MS.gene40288:CDS
AACTGGGGACGTGTGGTCAT+GGG 0.415664 3.3:-90886297 MS.gene40288:CDS
CCACCTTCTTTGCTTTCTTG+TGG 0.415767 3.3:+90886797 None:intergenic
AGAAGACAAAGCATCAATAA+AGG 0.417834 3.3:-90886988 MS.gene40288:intron
TGTTGGGGTAGAGGAATGTT+TGG 0.418285 3.3:-90888970 MS.gene40288:CDS
GATGGGTCTGTTGAAGAATT+GGG 0.418538 3.3:+90887017 None:intergenic
CCTTGGGAATGGAAAAGAAA+TGG 0.419157 3.3:-90886063 MS.gene40288:CDS
TGTTAGAGGCAGCAGATGAT+AGG 0.420451 3.3:-90885734 MS.gene40288:CDS
TGGGGAATGGAGAAGGGTCT+TGG 0.421651 3.3:-90886278 MS.gene40288:CDS
ACACTGTGTTTAGTTCCATT+AGG 0.422574 3.3:+90888886 None:intergenic
GTTTCACACCAACACCAGTC+TGG 0.423485 3.3:-90886757 MS.gene40288:CDS
GGATGTTTCCCCACATCCAT+AGG 0.424782 3.3:+90886819 None:intergenic
TAAAGGAGTGTCTCCAATCT+TGG 0.428789 3.3:-90885626 MS.gene40288:CDS
CAATGGATATTGCAAAAGAA+TGG 0.431243 3.3:-90885764 MS.gene40288:CDS
GAGGAATGTTTGGACGGCTT+GGG 0.431885 3.3:-90888960 MS.gene40288:CDS
TAAACACAGTGTTAAAATAG+TGG 0.432137 3.3:-90888875 MS.gene40288:CDS
GCTTTGTCTTCTGCTTCAGA+TGG 0.432694 3.3:+90886999 None:intergenic
AGGGACATAAGGTGTGGTCT+TGG 0.432771 3.3:-90886106 MS.gene40288:CDS
CTTTGTCTTCTGCTTCAGAT+GGG 0.433747 3.3:+90887000 None:intergenic
ATGCTTTCTAATGTGCCATC+AGG 0.434547 3.3:+90886470 None:intergenic
TTGATAATTGCGGGACCCTA+TGG 0.439721 3.3:-90886835 MS.gene40288:CDS
AGATGGATCTGTTTGGTGCT+GGG 0.441156 3.3:-90887257 MS.gene40288:CDS
TGTTGCTCAGGAGGGACATA+AGG 0.446097 3.3:-90886117 MS.gene40288:CDS
TAAGGTGTGGTCTTGGGGTA+GGG 0.448746 3.3:-90886099 MS.gene40288:CDS
AGATGGCAGTGTATACTGTT+GGG 0.451480 3.3:-90888986 MS.gene40288:CDS
ATATGTATCCTTAATATGCT+TGG 0.456338 3.3:-90887226 MS.gene40288:CDS
AAGGTGTGGTCTTGGGGTAG+GGG 0.460092 3.3:-90886098 MS.gene40288:CDS
CTGTGGCCTCCAACAATTGA+GGG 0.461200 3.3:-90886017 MS.gene40288:CDS
ATGTGCTGGACCTTTGGCCT+TGG 0.462273 3.3:-90886449 MS.gene40288:CDS
GTGGTCATGGGGAATGGAGA+AGG 0.462920 3.3:-90886285 MS.gene40288:CDS
GGGGAAGGAGTGGAGTCCTT+GGG 0.463434 3.3:-90886079 MS.gene40288:CDS
AGGGGAAGGAGTGGAGTCCT+TGG 0.463472 3.3:-90886080 MS.gene40288:CDS
GGACGTGTGGTCATGGGGAA+TGG 0.465246 3.3:-90886291 MS.gene40288:CDS
AAATCTACTATGCTACTCTT+GGG 0.466275 3.3:-90886645 MS.gene40288:CDS
GTCCCGTTAAAGTTGTGTGT+GGG 0.467611 3.3:-90886157 MS.gene40288:CDS
AAATATGCTAGTATACTTCA+TGG 0.467821 3.3:-90885849 MS.gene40288:CDS
AAGATGGATCTGTTTGGTGC+TGG 0.470963 3.3:-90887258 MS.gene40288:CDS
AGTGTATACTGTTGGGGTAG+AGG 0.472628 3.3:-90888979 MS.gene40288:CDS
ACATACTGTTGTTGTTGCTC+AGG 0.475103 3.3:-90886129 MS.gene40288:CDS
ATAAGGTGTGGTCTTGGGGT+AGG 0.476461 3.3:-90886100 MS.gene40288:CDS
GTTTCAGCACGATTAGCATC+AGG 0.478375 3.3:+90886248 None:intergenic
GATCTTGTGTGATAGCTTGT+CGG 0.479055 3.3:+90889168 None:intergenic
AATGGATATTGCAAAAGAAT+GGG 0.480013 3.3:-90885763 MS.gene40288:CDS
GTCTCCTTGGACAATTTATG+AGG 0.480156 3.3:-90886540 MS.gene40288:CDS
TTACAGAAGATGGATCTGTT+TGG 0.481912 3.3:-90887264 MS.gene40288:intron
CTTGGTGAGAATGGCCAACT+TGG 0.484003 3.3:-90886431 MS.gene40288:CDS
AGAATGGGAGAACATGTTAG+AGG 0.485019 3.3:-90885748 MS.gene40288:CDS
TGTGGTCTTGGGGTAGGGGA+AGG 0.486035 3.3:-90886094 MS.gene40288:CDS
GGCAATTCTTTAATAGGAGT+GGG 0.489292 3.3:+90886380 None:intergenic
TTGAGACCCTCAATTGTTGG+AGG 0.493550 3.3:+90886011 None:intergenic
ATGTTTGGACGGCTTGGGAA+TGG 0.501627 3.3:-90888955 MS.gene40288:CDS
TACTTGACGAGGAGTCTCCT+TGG 0.502136 3.3:-90886553 MS.gene40288:CDS
GGACATAAGGTGTGGTCTTG+GGG 0.505598 3.3:-90886104 MS.gene40288:CDS
CAGATGTGTGCTGTCAAAGC+AGG 0.506084 3.3:-90886878 MS.gene40288:CDS
TGCTAAGTAAGCAAGGAACT+AGG 0.509756 3.3:+90887060 None:intergenic
AGCAAGCAGAGCAGTGTGAA+AGG 0.513897 3.3:+90886505 None:intergenic
CACACAACTTTAACGGGACC+CGG 0.519555 3.3:+90886161 None:intergenic
AAACGAGCATGTCGTAGCTC+TGG 0.521902 3.3:-90886696 MS.gene40288:CDS
TGGCAATTCTTTAATAGGAG+TGG 0.522877 3.3:+90886379 None:intergenic
AAAATAGTGGGTATTGCTGC+TGG 0.523385 3.3:-90888862 MS.gene40288:CDS
AGGAGTGGAGTCCTTGGGAA+TGG 0.528552 3.3:-90886074 MS.gene40288:CDS
TCTGTGGCCTCCAACAATTG+AGG 0.528618 3.3:-90886018 MS.gene40288:CDS
TTTCACACCAACACCAGTCT+GGG 0.530672 3.3:-90886756 MS.gene40288:CDS
ATCCCACAAGAAAGCAAAGA+AGG 0.530731 3.3:-90886800 MS.gene40288:CDS
ATTGCGGGACCCTATGGATG+TGG 0.533116 3.3:-90886829 MS.gene40288:CDS
GAGATGGCAGTGTATACTGT+TGG 0.536011 3.3:-90888987 MS.gene40288:CDS
GCTAAGTAAGCAAGGAACTA+GGG 0.538548 3.3:+90887061 None:intergenic
AGCAGGAGGAATGATGTCTC+TGG 0.541237 3.3:-90886861 MS.gene40288:CDS
TACTGTTGTTGTTGCTCAGG+AGG 0.541350 3.3:-90886126 MS.gene40288:CDS
TATCTTATTTCTGTTGACTG+TGG 0.541572 3.3:-90886347 MS.gene40288:CDS
ACTGGGGACGTGTGGTCATG+GGG 0.542847 3.3:-90886296 MS.gene40288:CDS
TGATAGGAAGCTAGTTAGGA+TGG 0.550267 3.3:-90885718 MS.gene40288:CDS
CAAGTGTTGTGTCCTCAACT+GGG 0.558104 3.3:-90886313 MS.gene40288:CDS
CCATGGCCAATTAGGTTTGG+GGG 0.558598 3.3:-90886612 MS.gene40288:CDS
TAGCTCTGATGAGCAAGATA+AGG 0.559561 3.3:-90885973 MS.gene40288:CDS
TGAGATGAGAAGAGGAGAGA+GGG 0.561465 3.3:+90886208 None:intergenic
GCACATTAGAAAGCATGTGC+TGG 0.562548 3.3:-90886463 MS.gene40288:CDS
AAATTGCATGAGATGAGAAG+AGG 0.564850 3.3:+90886200 None:intergenic
GATGTTTCCCCACATCCATA+GGG 0.569483 3.3:+90886820 None:intergenic
TTGCGGGACCCTATGGATGT+GGG 0.570217 3.3:-90886828 MS.gene40288:CDS
GATGGATCTGTTTGGTGCTG+GGG 0.570330 3.3:-90887256 MS.gene40288:CDS
GGTCCCGTTAAAGTTGTGTG+TGG 0.570763 3.3:-90886158 MS.gene40288:CDS
TGAAACCTGCTAAGTAAGCA+AGG 0.571693 3.3:+90887053 None:intergenic
GCCATGGCCAATTAGGTTTG+GGG 0.572289 3.3:-90886613 MS.gene40288:CDS
GGGGTAGAGGAATGTTTGGA+CGG 0.573684 3.3:-90888966 MS.gene40288:CDS
CTGTTTCTGCTATTATTTCG+GGG 0.574872 3.3:+90885937 None:intergenic
TGACCACACGTCCCCAGTTG+AGG 0.577118 3.3:+90886301 None:intergenic
AAACACAGTGTTAAAATAGT+GGG 0.577385 3.3:-90888874 MS.gene40288:CDS
TGGTCATGGGGAATGGAGAA+GGG 0.580126 3.3:-90886284 MS.gene40288:CDS
GCCATTCTCACCAAGGCCAA+AGG 0.583660 3.3:+90886439 None:intergenic
GCGTTGTTCCGTGTCCAAGT+TGG 0.584020 3.3:+90886417 None:intergenic
TCACGGTCGAACTGTTGTCA+AGG 0.586698 3.3:-90886729 MS.gene40288:CDS
AAGATCGTTGACATCGCCGC+TGG 0.591404 3.3:-90889151 MS.gene40288:CDS
ACACTCCCACCATTGTTCTG+TGG 0.592698 3.3:-90886034 MS.gene40288:CDS
AATTGAGGGTCTCAAAGAAG+AGG 0.594584 3.3:-90886003 MS.gene40288:CDS
GAAATAAGATATATGCATTG+TGG 0.604900 3.3:+90886359 None:intergenic
ACTGTTGTCAAGGTTTCATG+TGG 0.605298 3.3:-90886719 MS.gene40288:CDS
CACAAGAAAGCAAAGAAGGT+GGG 0.607070 3.3:-90886796 MS.gene40288:CDS
CGACCGTGAAAATCCCAGAC+TGG 0.609935 3.3:+90886743 None:intergenic
TCCCGTTAAAGTTGTGTGTG+GGG 0.612591 3.3:-90886156 MS.gene40288:CDS
ACTGTTGTTGTTGCTCAGGA+GGG 0.615836 3.3:-90886125 MS.gene40288:CDS
TGGAGGCCACAGAACAATGG+TGG 0.617338 3.3:+90886028 None:intergenic
TGAAAATCCCAGACTGGTGT+TGG 0.620193 3.3:+90886749 None:intergenic
TCTCTGGCTATTGATAATTG+CGG 0.621157 3.3:-90886845 MS.gene40288:CDS
TGCGGGACCCTATGGATGTG+GGG 0.621262 3.3:-90886827 MS.gene40288:CDS
CCGAATTCTGCATTGAAACA+GGG 0.623730 3.3:+90885790 None:intergenic
CGGGAGGCAATGGAAGACGC+CGG 0.624501 3.3:-90889205 None:intergenic
TCACACCAGTTAGCATGTCA+CGG 0.624713 3.3:+90885685 None:intergenic
GAGAATGGCCAACTTGGACA+CGG 0.624737 3.3:-90886425 MS.gene40288:CDS
CGTTAAAGTTGTGTGTGGGG+CGG 0.625152 3.3:-90886153 MS.gene40288:CDS
CTTCAGCTCATTCAACGCCG+TGG 0.629100 3.3:+90885902 None:intergenic
GCTACCTCATAAATTGTCCA+AGG 0.633257 3.3:+90886536 None:intergenic
GGAGGCCACAGAACAATGGT+GGG 0.639775 3.3:+90886029 None:intergenic
TCTTGGGGTTATAACAGCCA+TGG 0.641426 3.3:-90886629 MS.gene40288:CDS
CTCAGGAGGGACATAAGGTG+TGG 0.642472 3.3:-90886112 MS.gene40288:CDS
TGTCCTCAACTGGGGACGTG+TGG 0.643009 3.3:-90886304 MS.gene40288:CDS
CCACAAGAAAGCAAAGAAGG+TGG 0.643526 3.3:-90886797 MS.gene40288:CDS
GATGGCAGTGTATACTGTTG+GGG 0.643574 3.3:-90888985 MS.gene40288:CDS
AATCTACTATGCTACTCTTG+GGG 0.649210 3.3:-90886644 MS.gene40288:CDS
ATGAGATGAGAAGAGGAGAG+AGG 0.649282 3.3:+90886207 None:intergenic
TGTTGGAGGCCACAGAACAA+TGG 0.649818 3.3:+90886025 None:intergenic
AACAGATGAGAAATTATCCA+CGG 0.650270 3.3:-90885919 MS.gene40288:CDS
ATGTGTGCTGTCAAAGCAGG+AGG 0.655247 3.3:-90886875 MS.gene40288:CDS
TCTTGTGTGATAGCTTGTCG+GGG 0.680742 3.3:+90889170 None:intergenic
CAAGTTGGCCATTCTCACCA+AGG 0.682599 3.3:+90886432 None:intergenic
AAGTGTTGTGTCCTCAACTG+GGG 0.685919 3.3:-90886312 MS.gene40288:CDS
AAGAGTGTGTGATTCACCAG+CGG 0.708326 3.3:+90889135 None:intergenic
CGTGCTGAAACAAATTCTGG+TGG 0.714600 3.3:-90886236 MS.gene40288:CDS
GGGTCTGTTGAAGAATTGGG+CGG 0.724602 3.3:+90887020 None:intergenic
ACAATTTATGAGGTAGCATG+TGG 0.737032 3.3:-90886530 MS.gene40288:CDS
TAGTGCTATAGACTCACACG+AGG 0.791535 3.3:-90886672 MS.gene40288:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAAAAAATAAAAAATTT+TGG - chr3.3:90887150-90887169 MS.gene40288:intron 0.0%
!!! CTTTAAAAAAAAATAGATTT+TGG - chr3.3:90886907-90886926 MS.gene40288:intron 10.0%
!!! TGTATTTTTTTTTAACAAAA+TGG - chr3.3:90887099-90887118 MS.gene40288:intron 10.0%
!!! TTTAAAATAGTAAGATTTTA+TGG + chr3.3:90886743-90886762 None:intergenic 10.0%
!! AAAGATCAAAGAAATTATAA+AGG - chr3.3:90889176-90889195 MS.gene40288:CDS 15.0%
!! AAGAAAAAGGTAAATAAAAT+TGG + chr3.3:90885725-90885744 None:intergenic 15.0%
!! AGAAAAAGGTAAATAAAATT+GGG + chr3.3:90885724-90885743 None:intergenic 15.0%
!! ATAGGTTATGTTAATATTAA+GGG + chr3.3:90886802-90886821 None:intergenic 15.0%
!! ATTCTATGAAAATAAGATAA+AGG - chr3.3:90887247-90887266 MS.gene40288:CDS 15.0%
!! TAAACAACGTTATTAAATAT+CGG + chr3.3:90886323-90886342 None:intergenic 15.0%
!! TATAGGTTATGTTAATATTA+AGG + chr3.3:90886803-90886822 None:intergenic 15.0%
!! TTCTATGAAAATAAGATAAA+GGG - chr3.3:90887248-90887267 MS.gene40288:CDS 15.0%
!! AAAACACAAATAGAATTAGA+TGG + chr3.3:90887536-90887555 None:intergenic 20.0%
!! AAACACAAATAGAATTAGAT+GGG + chr3.3:90887535-90887554 None:intergenic 20.0%
!! ACTATATCTAATAAATTGGA+TGG + chr3.3:90886125-90886144 None:intergenic 20.0%
!! ATAACCAATAATAATAAGCT+GGG + chr3.3:90886852-90886871 None:intergenic 20.0%
!! ATCTCTTAAAAAACAGAAAT+AGG + chr3.3:90887003-90887022 None:intergenic 20.0%
!! ATGAAAATAAAAATTACAGC+TGG + chr3.3:90886074-90886093 None:intergenic 20.0%
!! CATAATGAGGTTAATAAATA+TGG + chr3.3:90887482-90887501 None:intergenic 20.0%
!! GTAAATTGAAAGAGAAAATT+AGG + chr3.3:90886031-90886050 None:intergenic 20.0%
!! TACTTGATAAAAAAGGTTAT+AGG + chr3.3:90886820-90886839 None:intergenic 20.0%
!! TATAACCAATAATAATAAGC+TGG + chr3.3:90886853-90886872 None:intergenic 20.0%
!! TATGTTAATATTAAGGGAAA+TGG + chr3.3:90886796-90886815 None:intergenic 20.0%
!! TCCAACTATATCTAATAAAT+TGG + chr3.3:90886129-90886148 None:intergenic 20.0%
!! TCCAATTTATTAGATATAGT+TGG - chr3.3:90886125-90886144 MS.gene40288:CDS 20.0%
!! TCTATGAAAATAAGATAAAG+GGG - chr3.3:90887249-90887268 MS.gene40288:CDS 20.0%
!!! AAAATAGATTTTGGGTTAAA+AGG - chr3.3:90886916-90886935 MS.gene40288:intron 20.0%
!!! AATATGTTGGTTCATTTATT+TGG - chr3.3:90887505-90887524 MS.gene40288:intron 20.0%
!!! ATATTTTAACAACTAACTGA+GGG - chr3.3:90886870-90886889 MS.gene40288:CDS 20.0%
!!! TAACCTTTTTTATCAAGTAT+TGG - chr3.3:90886821-90886840 MS.gene40288:CDS 20.0%
!!! TATATTTTAACAACTAACTG+AGG - chr3.3:90886869-90886888 MS.gene40288:CDS 20.0%
!!! TCTGTTTTTTAAGAGATTTT+GGG - chr3.3:90887006-90887025 MS.gene40288:CDS 20.0%
!!! TTCTGTTTTTTAAGAGATTT+TGG - chr3.3:90887005-90887024 MS.gene40288:CDS 20.0%
! AAACACAGTGTTAAAATAGT+GGG - chr3.3:90885945-90885964 MS.gene40288:CDS 25.0%
! AAATATGCTAGTATACTTCA+TGG - chr3.3:90888970-90888989 MS.gene40288:CDS 25.0%
! AACACAAATAGAATTAGATG+GGG + chr3.3:90887534-90887553 None:intergenic 25.0%
! AATGGATATTGCAAAAGAAT+GGG - chr3.3:90889056-90889075 MS.gene40288:intron 25.0%
! ACCCTAATATTAAAGCATAT+GGG + chr3.3:90886602-90886621 None:intergenic 25.0%
! ACGTTGTTTAATTGTGTTAA+AGG - chr3.3:90886333-90886352 MS.gene40288:CDS 25.0%
! ATATGTATCCTTAATATGCT+TGG - chr3.3:90887593-90887612 MS.gene40288:intron 25.0%
! ATCAAATTCTGATATGCTAT+AGG - chr3.3:90886271-90886290 MS.gene40288:CDS 25.0%
! ATTGAAAGAGAAAATTAGGA+AGG + chr3.3:90886027-90886046 None:intergenic 25.0%
! GAAATAAGATATATGCATTG+TGG + chr3.3:90888463-90888482 None:intergenic 25.0%
! TAAACACAGTGTTAAAATAG+TGG - chr3.3:90885944-90885963 MS.gene40288:CDS 25.0%
! TAACCAATAATAATAAGCTG+GGG + chr3.3:90886851-90886870 None:intergenic 25.0%
! TATCAAGAATTACACAACTT+CGG + chr3.3:90887458-90887477 None:intergenic 25.0%
! TCAAACAAAGCTATCTATAA+TGG - chr3.3:90888945-90888964 MS.gene40288:CDS 25.0%
! TCGAATAATCAAACTTTGTT+GGG - chr3.3:90886478-90886497 MS.gene40288:CDS 25.0%
! TTCGAATAATCAAACTTTGT+TGG - chr3.3:90886477-90886496 MS.gene40288:CDS 25.0%
!! AAGTTGATTATAATCAGTGT+AGG + chr3.3:90886441-90886460 None:intergenic 25.0%
!! ATACTTCATGGTTCAATTTT+TGG - chr3.3:90888982-90889001 MS.gene40288:CDS 25.0%
!! ATGAATCTTATCATTGATTG+AGG - chr3.3:90885793-90885812 MS.gene40288:CDS 25.0%
!! TGAATCTTATCATTGATTGA+GGG - chr3.3:90885794-90885813 MS.gene40288:CDS 25.0%
!!! ATCTGTTTCTGCTATTATTT+CGG + chr3.3:90888887-90888906 None:intergenic 25.0%
!!! ATGCGAGTAATTTCTTTTTT+TGG + chr3.3:90886663-90886682 None:intergenic 25.0%
!!! ATTTGTGTTTTTACAGAAGA+TGG - chr3.3:90887545-90887564 MS.gene40288:intron 25.0%
!!! GTTTTAAAACTTATATGCCA+AGG - chr3.3:90887878-90887897 MS.gene40288:intron 25.0%
!!! TCAAGTATTTTTACAACTTC+TGG + chr3.3:90888253-90888272 None:intergenic 25.0%
!!! TTAAGAGATTTTGGGTTAAA+AGG - chr3.3:90887014-90887033 MS.gene40288:CDS 25.0%
!!! TTCCAAAGTTGAGTTTTTTT+GGG + chr3.3:90885911-90885930 None:intergenic 25.0%
!!! TTGTTTTTAGAAAAGCTACT+TGG - chr3.3:90887049-90887068 MS.gene40288:CDS 25.0%
!!! TTTCCAAAGTTGAGTTTTTT+TGG + chr3.3:90885912-90885931 None:intergenic 25.0%
AAAAGACTCCAAGCATATTA+AGG + chr3.3:90887604-90887623 None:intergenic 30.0%
AAAATCTACTATGCTACTCT+TGG - chr3.3:90888173-90888192 MS.gene40288:intron 30.0%
AAATCTACTATGCTACTCTT+GGG - chr3.3:90888174-90888193 MS.gene40288:intron 30.0%
AACAGATGAGAAATTATCCA+CGG - chr3.3:90888900-90888919 MS.gene40288:CDS 30.0%
AGCCCATATGCTTTAATATT+AGG - chr3.3:90886597-90886616 MS.gene40288:CDS 30.0%
AGTTGTAAAAATACTTGACG+AGG - chr3.3:90888255-90888274 MS.gene40288:intron 30.0%
ATAAAAATTACAGCTGGATG+AGG + chr3.3:90886068-90886087 None:intergenic 30.0%
CAATGGATATTGCAAAAGAA+TGG - chr3.3:90889055-90889074 MS.gene40288:intron 30.0%
CATTGTGGCAATTCTTTAAT+AGG + chr3.3:90888448-90888467 None:intergenic 30.0%
CCAACATATTGATCATAATG+AGG + chr3.3:90887495-90887514 None:intergenic 30.0%
CCTCATTATGATCAATATGT+TGG - chr3.3:90887492-90887511 MS.gene40288:intron 30.0%
CTGCCAATACTTGATAAAAA+AGG + chr3.3:90886827-90886846 None:intergenic 30.0%
GACCCTAATATTAAAGCATA+TGG + chr3.3:90886603-90886622 None:intergenic 30.0%
GCCCATATGCTTTAATATTA+GGG - chr3.3:90886598-90886617 MS.gene40288:CDS 30.0%
GGATTCAAGTAAGAAGAAAA+AGG + chr3.3:90885738-90885757 None:intergenic 30.0%
TACAAAATGTTGTCAAGCAA+TGG + chr3.3:90886228-90886247 None:intergenic 30.0%
TTAAAAAATCCCAGACAAAC+AGG - chr3.3:90887173-90887192 MS.gene40288:intron 30.0%
TTATTAAATATCGGCCATAG+CGG + chr3.3:90886314-90886333 None:intergenic 30.0%
TTCCCAAAAAAACTCAACTT+TGG - chr3.3:90885906-90885925 MS.gene40288:CDS 30.0%
! AGAAGACAAAGCATCAATAA+AGG - chr3.3:90887831-90887850 MS.gene40288:intron 30.0%
!! AATCAGAAGCTATTTCTGTT+TGG - chr3.3:90886971-90886990 MS.gene40288:intron 30.0%
!! AATGCTTCTAAGGATACTTT+TGG - chr3.3:90887202-90887221 MS.gene40288:intron 30.0%
!! TATCTTATTTCTGTTGACTG+TGG - chr3.3:90888472-90888491 MS.gene40288:intron 30.0%
!! TCTGTTTCTGCTATTATTTC+GGG + chr3.3:90888886-90888905 None:intergenic 30.0%
!! TTTTCATCAACCCATTTTTC+CGG - chr3.3:90888639-90888658 MS.gene40288:intron 30.0%
AAATTGCATGAGATGAGAAG+AGG + chr3.3:90888622-90888641 None:intergenic 35.0%
AATCGTGCTGAAACAAATTC+TGG - chr3.3:90888580-90888599 MS.gene40288:intron 35.0%
AATCTACTATGCTACTCTTG+GGG - chr3.3:90888175-90888194 MS.gene40288:intron 35.0%
ACAATTTATGAGGTAGCATG+TGG - chr3.3:90888289-90888308 MS.gene40288:intron 35.0%
AGACCCCAGCTTATTATTAT+TGG - chr3.3:90886845-90886864 MS.gene40288:CDS 35.0%
GGCAATTCTTTAATAGGAGT+GGG + chr3.3:90888442-90888461 None:intergenic 35.0%
GGGATATCTTGCTCATTAAA+AGG + chr3.3:90889012-90889031 None:intergenic 35.0%
TACTTTATGGATGGTCAACT+TGG - chr3.3:90887706-90887725 MS.gene40288:intron 35.0%
TGGCAATTCTTTAATAGGAG+TGG + chr3.3:90888443-90888462 None:intergenic 35.0%
TTACAGAAGATGGATCTGTT+TGG - chr3.3:90887555-90887574 MS.gene40288:intron 35.0%
! ACACTGTGTTTAGTTCCATT+AGG + chr3.3:90885936-90885955 None:intergenic 35.0%
! CTCAACTTTGGAAATCCTAA+TGG - chr3.3:90885918-90885937 MS.gene40288:CDS 35.0%
! GTTCAATTTTGTGTAGGAGA+TGG - chr3.3:90885816-90885835 MS.gene40288:CDS 35.0%
! TCTCTGGCTATTGATAATTG+CGG - chr3.3:90887974-90887993 MS.gene40288:intron 35.0%
! TGGAACAGCTTTTCATTTTG+AGG - chr3.3:90887069-90887088 MS.gene40288:CDS 35.0%
! TTGAGGGTTCAATTTTGTGT+AGG - chr3.3:90885810-90885829 MS.gene40288:CDS 35.0%
!! AAACTCTTAAAGAGTGCCTA+AGG - chr3.3:90886760-90886779 MS.gene40288:CDS 35.0%
!! AACTCTTAAAGAGTGCCTAA+GGG - chr3.3:90886761-90886780 MS.gene40288:CDS 35.0%
!! AGTATCCTTAGAAGCATTTC+AGG + chr3.3:90887200-90887219 None:intergenic 35.0%
!! CTGTTTCTGCTATTATTTCG+GGG + chr3.3:90888885-90888904 None:intergenic 35.0%
!! GTATCCTTAGAAGCATTTCA+GGG + chr3.3:90887199-90887218 None:intergenic 35.0%
!! TTTCATCAACCCATTTTTCC+GGG - chr3.3:90888640-90888659 MS.gene40288:intron 35.0%
!!! TGAATGTCATTTTCCCTTGA+TGG - chr3.3:90887423-90887442 MS.gene40288:intron 35.0%
AAGCATATGGGCTCTATCAT+AGG + chr3.3:90886590-90886609 None:intergenic 40.0%
AATTGAGGGTCTCAAAGAAG+AGG - chr3.3:90888816-90888835 MS.gene40288:intron 40.0%
ACTGTTGTCAAGGTTTCATG+TGG - chr3.3:90888100-90888119 MS.gene40288:intron 40.0%
AGAATGGGAGAACATGTTAG+AGG - chr3.3:90889071-90889090 MS.gene40288:intron 40.0%
AGATGGCAGTGTATACTGTT+GGG - chr3.3:90885833-90885852 MS.gene40288:CDS 40.0%
AGATGGGTCTGTTGAAGAAT+TGG + chr3.3:90887806-90887825 None:intergenic 40.0%
ATCATGCTTCTCAACAGACA+AGG - chr3.3:90886505-90886524 MS.gene40288:CDS 40.0%
ATCCCACAAGAAAGCAAAGA+AGG - chr3.3:90888019-90888038 MS.gene40288:intron 40.0%
ATGCTTTCTAATGTGCCATC+AGG + chr3.3:90888352-90888371 None:intergenic 40.0%
CACAAGAAAGCAAAGAAGGT+GGG - chr3.3:90888023-90888042 MS.gene40288:intron 40.0%
CACAAGTGCAATGAAGTGAA+TGG - chr3.3:90887325-90887344 MS.gene40288:intron 40.0%
CACCTTCTTTGCTTTCTTGT+GGG + chr3.3:90888024-90888043 None:intergenic 40.0%
CAGATGATAGGAAGCTAGTT+AGG - chr3.3:90889097-90889116 MS.gene40288:intron 40.0%
CCCTGTTTCAATGCAGAATT+CGG - chr3.3:90889029-90889048 MS.gene40288:intron 40.0%
CCGAATTCTGCATTGAAACA+GGG + chr3.3:90889032-90889051 None:intergenic 40.0%
CCTGTTTCAATGCAGAATTC+GGG - chr3.3:90889030-90889049 MS.gene40288:intron 40.0%
CCTTGGGAATGGAAAAGAAA+TGG - chr3.3:90888756-90888775 MS.gene40288:intron 40.0%
CTGTGTCCTTGACTACTTTA+TGG - chr3.3:90887693-90887712 MS.gene40288:intron 40.0%
CTTTGTCTTCTGCTTCAGAT+GGG + chr3.3:90887822-90887841 None:intergenic 40.0%
GACCATCCATAAAGTAGTCA+AGG + chr3.3:90887702-90887721 None:intergenic 40.0%
GATGGGTCTGTTGAAGAATT+GGG + chr3.3:90887805-90887824 None:intergenic 40.0%
GCTAAGTAAGCAAGGAACTA+GGG + chr3.3:90887761-90887780 None:intergenic 40.0%
GCTACCTCATAAATTGTCCA+AGG + chr3.3:90888286-90888305 None:intergenic 40.0%
GCTCACAAAAAGAAACCTGA+TGG - chr3.3:90888334-90888353 MS.gene40288:intron 40.0%
GTCCTTGACTACTTTATGGA+TGG - chr3.3:90887697-90887716 MS.gene40288:intron 40.0%
GTCTCCTTGGACAATTTATG+AGG - chr3.3:90888279-90888298 MS.gene40288:intron 40.0%
TAGTTCCTTGCTTACTTAGC+AGG - chr3.3:90887761-90887780 MS.gene40288:intron 40.0%
TATAACAGCCATGGCCAATT+AGG - chr3.3:90888199-90888218 MS.gene40288:intron 40.0%
TCACACACTCTTCTTCTTAC+TGG - chr3.3:90885695-90885714 MS.gene40288:CDS 40.0%
TGAAACCTGCTAAGTAAGCA+AGG + chr3.3:90887769-90887788 None:intergenic 40.0%
TGATAGGAAGCTAGTTAGGA+TGG - chr3.3:90889101-90889120 MS.gene40288:intron 40.0%
TGCTAAGTAAGCAAGGAACT+AGG + chr3.3:90887762-90887781 None:intergenic 40.0%
! AATGCAGAATTCGGGTTCAA+TGG - chr3.3:90889038-90889057 MS.gene40288:intron 40.0%
! ACATACTGTTGTTGTTGCTC+AGG - chr3.3:90888690-90888709 MS.gene40288:intron 40.0%
! AGACTTTGATAACCAGAGAG+AGG - chr3.3:90887396-90887415 MS.gene40288:intron 40.0%
! ATCTTGTGTGATAGCTTGTC+GGG + chr3.3:90885653-90885672 None:intergenic 40.0%
! CCATTTCTTTTCCATTCCCA+AGG + chr3.3:90888759-90888778 None:intergenic 40.0%
! CTCTGGCTATTGATAATTGC+GGG - chr3.3:90887975-90887994 MS.gene40288:intron 40.0%
! GACTTTGATAACCAGAGAGA+GGG - chr3.3:90887397-90887416 MS.gene40288:intron 40.0%
! GATCTTGTGTGATAGCTTGT+CGG + chr3.3:90885654-90885673 None:intergenic 40.0%
! TATCATAGTCTTGCTCTTGC+AGG - chr3.3:90885984-90886003 MS.gene40288:CDS 40.0%
! TTTTACCGTGACATGCTAAC+TGG - chr3.3:90889129-90889148 MS.gene40288:CDS 40.0%
!! AAAATAGTGGGTATTGCTGC+TGG - chr3.3:90885957-90885976 MS.gene40288:CDS 40.0%
!! AATCCTTAAAGAGTGCCCTA+AGG + chr3.3:90886640-90886659 None:intergenic 40.0%
!! ATCCTTAAAGAGTGCCCTAA+GGG + chr3.3:90886639-90886658 None:intergenic 40.0%
!! TAAAGGAGTGTCTCCAATCT+TGG - chr3.3:90889193-90889212 MS.gene40288:CDS 40.0%
!! TAGCTCTGATGAGCAAGATA+AGG - chr3.3:90888846-90888865 MS.gene40288:CDS 40.0%
!! TCTTTGAGACCCTCAATTGT+TGG + chr3.3:90888814-90888833 None:intergenic 40.0%
!!! TCTAAGGATACTTTTGGAGC+AGG - chr3.3:90887208-90887227 MS.gene40288:intron 40.0%
AGCCATGGCCAATTAGGTTT+GGG - chr3.3:90888205-90888224 MS.gene40288:intron 45.0%
AGTGTATACTGTTGGGGTAG+AGG - chr3.3:90885840-90885859 MS.gene40288:CDS 45.0%
ATGAGATGAGAAGAGGAGAG+AGG + chr3.3:90888615-90888634 None:intergenic 45.0%
ATTTCAGGGCCTGTTTGTCT+GGG + chr3.3:90887185-90887204 None:intergenic 45.0%
CCACAAGAAAGCAAAGAAGG+TGG - chr3.3:90888022-90888041 MS.gene40288:intron 45.0%
CCACCTTCTTTGCTTTCTTG+TGG + chr3.3:90888025-90888044 None:intergenic 45.0%
CCCGAATTCTGCATTGAAAC+AGG + chr3.3:90889033-90889052 None:intergenic 45.0%
CGTGCTGAAACAAATTCTGG+TGG - chr3.3:90888583-90888602 MS.gene40288:intron 45.0%
CTCTGCAAATATGCAGTGTG+AGG + chr3.3:90885759-90885778 None:intergenic 45.0%
CTTGCTAACGAGTTCCCTTA+GGG - chr3.3:90886622-90886641 MS.gene40288:CDS 45.0%
GACATTCAAATCCCTCTCTC+TGG + chr3.3:90887411-90887430 None:intergenic 45.0%
GAGATGGCAGTGTATACTGT+TGG - chr3.3:90885832-90885851 MS.gene40288:CDS 45.0%
GATGGCAGTGTATACTGTTG+GGG - chr3.3:90885834-90885853 MS.gene40288:CDS 45.0%
GATGTTTCCCCACATCCATA+GGG + chr3.3:90888002-90888021 None:intergenic 45.0%
GCTTTGTCTTCTGCTTCAGA+TGG + chr3.3:90887823-90887842 None:intergenic 45.0%
GTCCCGTTAAAGTTGTGTGT+GGG - chr3.3:90888662-90888681 MS.gene40288:intron 45.0%
GTTTCAGCACGATTAGCATC+AGG + chr3.3:90888574-90888593 None:intergenic 45.0%
TAGTGCTATAGACTCACACG+AGG - chr3.3:90888147-90888166 MS.gene40288:intron 45.0%
TCACACCAGTTAGCATGTCA+CGG + chr3.3:90889137-90889156 None:intergenic 45.0%
TCCCGTTAAAGTTGTGTGTG+GGG - chr3.3:90888663-90888682 MS.gene40288:intron 45.0%
TCTTGCTAACGAGTTCCCTT+AGG - chr3.3:90886621-90886640 MS.gene40288:CDS 45.0%
TCTTGGGGTTATAACAGCCA+TGG - chr3.3:90888190-90888209 MS.gene40288:intron 45.0%
TGAAAATCCCAGACTGGTGT+TGG + chr3.3:90888073-90888092 None:intergenic 45.0%
TGAGATGAGAAGAGGAGAGA+GGG + chr3.3:90888614-90888633 None:intergenic 45.0%
TGTTAGAGGCAGCAGATGAT+AGG - chr3.3:90889085-90889104 MS.gene40288:intron 45.0%
TGTTGGGGTAGAGGAATGTT+TGG - chr3.3:90885849-90885868 MS.gene40288:CDS 45.0%
TTAACGGGACCCGGAAAAAT+GGG + chr3.3:90888652-90888671 None:intergenic 45.0%
TTGAGACCCTCAATTGTTGG+AGG + chr3.3:90888811-90888830 None:intergenic 45.0%
TTTAACGGGACCCGGAAAAA+TGG + chr3.3:90888653-90888672 None:intergenic 45.0%
TTTCACACCAACACCAGTCT+GGG - chr3.3:90888063-90888082 MS.gene40288:intron 45.0%
! AAATGGTAACGAGTGCCCTT+AGG + chr3.3:90886779-90886798 None:intergenic 45.0%
! AAGAGTGTGTGATTCACCAG+CGG + chr3.3:90885687-90885706 None:intergenic 45.0%
! AAGTGTTGTGTCCTCAACTG+GGG - chr3.3:90888507-90888526 MS.gene40288:intron 45.0%
! ACAAGTGTTGTGTCCTCAAC+TGG - chr3.3:90888505-90888524 MS.gene40288:intron 45.0%
! ACTGTTGTTGTTGCTCAGGA+GGG - chr3.3:90888694-90888713 MS.gene40288:intron 45.0%
! CAAGTGTTGTGTCCTCAACT+GGG - chr3.3:90888506-90888525 MS.gene40288:intron 45.0%
! GCACATTAGAAAGCATGTGC+TGG - chr3.3:90888356-90888375 MS.gene40288:intron 45.0%
! TACTGTTGTTGTTGCTCAGG+AGG - chr3.3:90888693-90888712 MS.gene40288:intron 45.0%
! TCGGCTTGAGTTACCATCAA+GGG + chr3.3:90887439-90887458 None:intergenic 45.0%
! TCTTGTGTGATAGCTTGTCG+GGG + chr3.3:90885652-90885671 None:intergenic 45.0%
! TTCCCTTAGGGCACTCTTTA+AGG - chr3.3:90886634-90886653 MS.gene40288:CDS 45.0%
! TTCGGCTTGAGTTACCATCA+AGG + chr3.3:90887440-90887459 None:intergenic 45.0%
! TTGATAATTGCGGGACCCTA+TGG - chr3.3:90887984-90888003 MS.gene40288:intron 45.0%
!! AAGATGGATCTGTTTGGTGC+TGG - chr3.3:90887561-90887580 MS.gene40288:intron 45.0%
!! ACACCAGTCTGGGATTTTCA+CGG - chr3.3:90888073-90888092 MS.gene40288:intron 45.0%
!! AGATGGATCTGTTTGGTGCT+GGG - chr3.3:90887562-90887581 MS.gene40288:intron 45.0%
!! GATGGTCAACTTGGTCTTAG+TGG - chr3.3:90887715-90887734 MS.gene40288:intron 45.0%
!! TCAACTTGGTCTTAGTGGAG+AGG - chr3.3:90887720-90887739 MS.gene40288:intron 45.0%
!!! GGATACTTTTGGAGCAGGAA+TGG - chr3.3:90887213-90887232 MS.gene40288:intron 45.0%
!!! TACTTTTGGAGCAGGAATGG+TGG - chr3.3:90887216-90887235 MS.gene40288:intron 45.0%
!!! TTTAAAAAAAAATAGATTTT+GGG - chr3.3:90886908-90886927 MS.gene40288:intron 5.0%
AAACGAGCATGTCGTAGCTC+TGG - chr3.3:90888123-90888142 MS.gene40288:intron 50.0%
ACACTCCCACCATTGTTCTG+TGG - chr3.3:90888785-90888804 MS.gene40288:intron 50.0%
AGAGGAATGTTTGGACGGCT+TGG - chr3.3:90885858-90885877 MS.gene40288:CDS 50.0%
AGCAAGCAGAGCAGTGTGAA+AGG + chr3.3:90888317-90888336 None:intergenic 50.0%
AGCAGGAGGAATGATGTCTC+TGG - chr3.3:90887958-90887977 MS.gene40288:intron 50.0%
AGGGACATAAGGTGTGGTCT+TGG - chr3.3:90888713-90888732 MS.gene40288:intron 50.0%
ATGTGTGCTGTCAAAGCAGG+AGG - chr3.3:90887944-90887963 MS.gene40288:intron 50.0%
CACACAACTTTAACGGGACC+CGG + chr3.3:90888661-90888680 None:intergenic 50.0%
CAGATGTGTGCTGTCAAAGC+AGG - chr3.3:90887941-90887960 MS.gene40288:intron 50.0%
CAGCCATGGCCAATTAGGTT+TGG - chr3.3:90888204-90888223 MS.gene40288:intron 50.0%
CAGGCCCTGAAATGCTTCTA+AGG - chr3.3:90887192-90887211 MS.gene40288:intron 50.0%
CATTTCAGGGCCTGTTTGTC+TGG + chr3.3:90887186-90887205 None:intergenic 50.0%
CCAAGGTGACTGCGTTGTTA+AGG - chr3.3:90887895-90887914 MS.gene40288:intron 50.0%
CCATGGCCAATTAGGTTTGG+GGG - chr3.3:90888207-90888226 MS.gene40288:intron 50.0%
CCTTAACAACGCAGTCACCT+TGG + chr3.3:90887898-90887917 None:intergenic 50.0%
CGCCCCACACACAACTTTAA+CGG + chr3.3:90888668-90888687 None:intergenic 50.0%
CGTTAAAGTTGTGTGTGGGG+CGG - chr3.3:90888666-90888685 MS.gene40288:intron 50.0%
CTGTGGCCTCCAACAATTGA+GGG - chr3.3:90888802-90888821 MS.gene40288:intron 50.0%
CTTGGTGAGAATGGCCAACT+TGG - chr3.3:90888388-90888407 MS.gene40288:intron 50.0%
GAGAATGGCCAACTTGGACA+CGG - chr3.3:90888394-90888413 MS.gene40288:intron 50.0%
GAGGAATGTTTGGACGGCTT+GGG - chr3.3:90885859-90885878 MS.gene40288:CDS 50.0%
GCCAATTAGGTTTGGGGGAT+AGG - chr3.3:90888212-90888231 MS.gene40288:intron 50.0%
GCCATGGCCAATTAGGTTTG+GGG - chr3.3:90888206-90888225 MS.gene40288:intron 50.0%
GCCCCACACACAACTTTAAC+GGG + chr3.3:90888667-90888686 None:intergenic 50.0%
GCCTATCCCCCAAACCTAAT+TGG + chr3.3:90888216-90888235 None:intergenic 50.0%
GCTATAGGCCTATAGCGCTA+TGG - chr3.3:90886286-90886305 MS.gene40288:CDS 50.0%
GGATGTTTCCCCACATCCAT+AGG + chr3.3:90888003-90888022 None:intergenic 50.0%
GGGACATAAGGTGTGGTCTT+GGG - chr3.3:90888714-90888733 MS.gene40288:intron 50.0%
GGGGTAGAGGAATGTTTGGA+CGG - chr3.3:90885853-90885872 MS.gene40288:CDS 50.0%
GGGTCTGTTGAAGAATTGGG+CGG + chr3.3:90887802-90887821 None:intergenic 50.0%
GGTCCCGTTAAAGTTGTGTG+TGG - chr3.3:90888661-90888680 MS.gene40288:intron 50.0%
GTTTCACACCAACACCAGTC+TGG - chr3.3:90888062-90888081 MS.gene40288:intron 50.0%
TACTTGACGAGGAGTCTCCT+TGG - chr3.3:90888266-90888285 MS.gene40288:intron 50.0%
TCACGGTCGAACTGTTGTCA+AGG - chr3.3:90888090-90888109 MS.gene40288:intron 50.0%
TCTGTGGCCTCCAACAATTG+AGG - chr3.3:90888801-90888820 MS.gene40288:intron 50.0%
TGGTCATGGGGAATGGAGAA+GGG - chr3.3:90888535-90888554 MS.gene40288:intron 50.0%
TGTTGCTCAGGAGGGACATA+AGG - chr3.3:90888702-90888721 MS.gene40288:intron 50.0%
TGTTGGAGGCCACAGAACAA+TGG + chr3.3:90888797-90888816 None:intergenic 50.0%
! ATAAGGTGTGGTCTTGGGGT+AGG - chr3.3:90888719-90888738 MS.gene40288:intron 50.0%
! ATGTTTGGACGGCTTGGGAA+TGG - chr3.3:90885864-90885883 MS.gene40288:CDS 50.0%
! CAAGTTGGCCATTCTCACCA+AGG + chr3.3:90888390-90888409 None:intergenic 50.0%
! GAAAGCATGTGCTGGACCTT+TGG - chr3.3:90888364-90888383 MS.gene40288:intron 50.0%
! GGACATAAGGTGTGGTCTTG+GGG - chr3.3:90888715-90888734 MS.gene40288:intron 50.0%
! TAAGGTGTGGTCTTGGGGTA+GGG - chr3.3:90888720-90888739 MS.gene40288:intron 50.0%
! TGTGATAGCTTGTCGGGGTT+CGG + chr3.3:90885647-90885666 None:intergenic 50.0%
!! ACCTTTGGCCTTGGTGAGAA+TGG - chr3.3:90888379-90888398 MS.gene40288:intron 50.0%
!! ACTTGGTCTTAGTGGAGAGG+AGG - chr3.3:90887723-90887742 MS.gene40288:intron 50.0%
!! GATGGATCTGTTTGGTGCTG+GGG - chr3.3:90887563-90887582 MS.gene40288:intron 50.0%
AACTGGGGACGTGTGGTCAT+GGG - chr3.3:90888522-90888541 MS.gene40288:intron 55.0%
AAGATCGTTGACATCGCCGC+TGG - chr3.3:90885668-90885687 MS.gene40288:CDS 55.0%
AGGAGTGGAGTCCTTGGGAA+TGG - chr3.3:90888745-90888764 MS.gene40288:intron 55.0%
ATGTGCTGGACCTTTGGCCT+TGG - chr3.3:90888370-90888389 MS.gene40288:intron 55.0%
ATTGCGGGACCCTATGGATG+TGG - chr3.3:90887990-90888009 MS.gene40288:intron 55.0%
CCCCCAAACCTAATTGGCCA+TGG + chr3.3:90888210-90888229 None:intergenic 55.0%
CGACCGTGAAAATCCCAGAC+TGG + chr3.3:90888079-90888098 None:intergenic 55.0%
CTCAGGAGGGACATAAGGTG+TGG - chr3.3:90888707-90888726 MS.gene40288:intron 55.0%
CTTCAGCTCATTCAACGCCG+TGG + chr3.3:90888920-90888939 None:intergenic 55.0%
GCCATTCTCACCAAGGCCAA+AGG + chr3.3:90888383-90888402 None:intergenic 55.0%
GCGTTGTTCCGTGTCCAAGT+TGG + chr3.3:90888405-90888424 None:intergenic 55.0%
GGAGGCCACAGAACAATGGT+GGG + chr3.3:90888793-90888812 None:intergenic 55.0%
GTCGGGGTTCGGATAACTTC+CGG + chr3.3:90885636-90885655 None:intergenic 55.0%
GTGGTCATGGGGAATGGAGA+AGG - chr3.3:90888534-90888553 MS.gene40288:intron 55.0%
TGGAGGCCACAGAACAATGG+TGG + chr3.3:90888794-90888813 None:intergenic 55.0%
TGGGGAATGGAGAAGGGTCT+TGG - chr3.3:90888541-90888560 MS.gene40288:intron 55.0%
TTGCGGGACCCTATGGATGT+GGG - chr3.3:90887991-90888010 MS.gene40288:intron 55.0%
! AAGGTGTGGTCTTGGGGTAG+GGG - chr3.3:90888721-90888740 MS.gene40288:intron 55.0%
ACTGGGGACGTGTGGTCATG+GGG - chr3.3:90888523-90888542 MS.gene40288:intron 60.0%
AGGGGAAGGAGTGGAGTCCT+TGG - chr3.3:90888739-90888758 MS.gene40288:intron 60.0%
ATAGCGCTATGGCGCCGCTA+TGG - chr3.3:90886297-90886316 MS.gene40288:CDS 60.0%
CAACTGGGGACGTGTGGTCA+TGG - chr3.3:90888521-90888540 MS.gene40288:intron 60.0%
GCGCTGTCAAGCGCAGATTG+CGG - chr3.3:90886163-90886182 MS.gene40288:CDS 60.0%
GGACGTGTGGTCATGGGGAA+TGG - chr3.3:90888528-90888547 MS.gene40288:intron 60.0%
GGGGAAGGAGTGGAGTCCTT+GGG - chr3.3:90888740-90888759 MS.gene40288:intron 60.0%
GTTTGGGGGATAGGCAGAGC+AGG - chr3.3:90888221-90888240 MS.gene40288:intron 60.0%
TAGCGGCGCCATAGCGCTAT+AGG + chr3.3:90886297-90886316 None:intergenic 60.0%
TCTTGGGGTAGGGGAAGGAG+TGG - chr3.3:90888730-90888749 MS.gene40288:intron 60.0%
TGACCACACGTCCCCAGTTG+AGG + chr3.3:90888521-90888540 None:intergenic 60.0%
TGCGGGACCCTATGGATGTG+GGG - chr3.3:90887992-90888011 MS.gene40288:intron 60.0%
TGTCCTCAACTGGGGACGTG+TGG - chr3.3:90888515-90888534 MS.gene40288:intron 60.0%
! TGTGGTCTTGGGGTAGGGGA+AGG - chr3.3:90888725-90888744 MS.gene40288:intron 60.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 90885623 90889218 90885623 ID=MS.gene40288
chr3.3 mRNA 90885623 90889218 90885623 ID=MS.gene40288.t1;Parent=MS.gene40288
chr3.3 exon 90889125 90889218 90889125 ID=MS.gene40288.t1.exon1;Parent=MS.gene40288.t1
chr3.3 CDS 90889125 90889218 90889125 ID=cds.MS.gene40288.t1;Parent=MS.gene40288.t1
chr3.3 exon 90888836 90889009 90888836 ID=MS.gene40288.t1.exon2;Parent=MS.gene40288.t1
chr3.3 CDS 90888836 90889009 90888836 ID=cds.MS.gene40288.t1;Parent=MS.gene40288.t1
chr3.3 exon 90887225 90887280 90887225 ID=MS.gene40288.t1.exon3;Parent=MS.gene40288.t1
chr3.3 CDS 90887225 90887280 90887225 ID=cds.MS.gene40288.t1;Parent=MS.gene40288.t1
chr3.3 exon 90886989 90887099 90886989 ID=MS.gene40288.t1.exon4;Parent=MS.gene40288.t1
chr3.3 CDS 90886989 90887099 90886989 ID=cds.MS.gene40288.t1;Parent=MS.gene40288.t1
chr3.3 exon 90885623 90886897 90885623 ID=MS.gene40288.t1.exon5;Parent=MS.gene40288.t1
chr3.3 CDS 90885623 90886897 90885623 ID=cds.MS.gene40288.t1;Parent=MS.gene40288.t1
Gene Sequence

>MS.gene40288

ATGGAAGACGCCGGAAGTTATCCGAACCCCGACAAGCTATCACACAAGATCGTTGACATCGCCGCTGGTGAATCACACACTCTTCTTCTTACTGGTAACCCAATTTTATTTACCTTTTTCTTCTTACTTGAATCCTCACACTGCATATTTGCAGAGTAAATATCTCTGTTATGAATCTTATCATTGATTGAGGGTTCAATTTTGTGTAGGAGATGGCAGTGTATACTGTTGGGGTAGAGGAATGTTTGGACGGCTTGGGAATGGTTCTCAACAAGATGAACTTTTCCCAAAAAAACTCAACTTTGGAAATCCTAATGGAACTAAACACAGTGTTAAAATAGTGGGTATTGCTGCTGGTTCTTATCATAGTCTTGCTCTTGCAGGTTCAGTAACACTTCATACCTTCCTAATTTTCTCTTTCAATTTACAACTGCTTGCATGACCTCATCCAGCTGTAATTTTTATTTTCATTCTTGTTGCATAAACGATACAGCTAATTCCATCCAATTTATTAGATATAGTTGGAAATTTGTTATATTAGCGCTGTCAAGCGCAGATTGCGGAATATAGTAGTTTTTTCAAATTACGATATGCAACTATTACCATTGCTTGACAACATTTTGTACTAACTAGAACAATAGCTATTTGATCAAATTCTGATATGCTATAGGCCTATAGCGCTATGGCGCCGCTATGGCCGATATTTAATAACGTTGTTTAATTGTGTTAAAGGTAGTTACAAGTTTTCTAGTATTAGTTGCATGTAATTTAAGATGTTAGTTTAGTTATGATCACTATATAAAGTATGTTCTACTCCTACACTGATTATAATCAACTTTTCTCATTCTATAAATTTCGAATAATCAAACTTTGTTGGGCTCTATCATGCTTCTCAACAGACAAGGAATACTAGAAACACGTTCTCTGTTATTGCTTAAATCTCATGAGTCAATGTGACATTTGACCTATGATAGAGCCCATATGCTTTAATATTAGGGTCTTGCTAACGAGTTCCCTTAGGGCACTCTTTAAGGATTCCAAAAAAAGAAATTACTCGCATGTTATTTATTTAAAAAGTCAAACATTTCAATTTTCAATGCATTGAATGCACACATTTCCATAAAATCTTACTATTTTAAACTCTTAAAGAGTGCCTAAGGGCACTCGTTACCATTTCCCTTAATATTAACATAACCTATAACCTTTTTTATCAAGTATTGGCAGACCCCAGCTTATTATTATTGGTTATATTTTAACAACTAACTGAGGGTCTGTTTGTTTCAACTTTAAAAAAAAATAGATTTTGGGTTAAAAGGATCTAGAGATTTTTTTTAGAGATTTTAAAAAAAATCAGAAGCTATTTCTGTTTGGTTAAAACCTATTTCTGTTTTTTAAGAGATTTTGGGTTAAAAGGATCTAGAGTTTCTTGTTTTTAGAAAAGCTACTTGGAACAGCTTTTCATTTTGAGGCTATAAATGTATTTTTTTTTAACAAAATGGATTATTTTTTAAAATCTGAAACTACAAAAATAAAAAAATAAAAAATTTTGGTTAAAAAATCCCAGACAAACAGGCCCTGAAATGCTTCTAAGGATACTTTTGGAGCAGGAATGGTGGTTAAGTCAATTCTATGAAAATAAGATAAAGGGGATAATATTGTTATGCAACTATTAAACAAATTTTCTACAATTTCTCAATTACAGCACAAGTGCAATGAAGTGAATGGAGACGTATGTTCAGATTTTTACTAATGATTCGTTTTAGTCTCGTAACAAGACTTTGATAACCAGAGAGAGGGATTTGAATGTCATTTTCCCTTGATGGTAACTCAAGCCGAAGTTGTGTAATTCTTGATAACCATATTTATTAACCTCATTATGATCAATATGTTGGTTCATTTATTTGGTAACCCCATCTAATTCTATTTGTGTTTTTACAGAAGATGGATCTGTTTGGTGCTGGGGTTACAATATATGTATCCTTAATATGCTTGGAGTCTTTTGATTGAGTTCAACTACTGATTGTTTTCACTTCTATCAATTTGTTGAATGTATATTATATATACTAGTATCTGTGTCCTTGACTACTTTATGGATGGTCAACTTGGTCTTAGTGGAGAGGAGGACTCGCATGATTCCCTAGTTCCTTGCTTACTTAGCAGGTTTCATGAGTTGCAACCGCCCAATTCTTCAACAGACCCATCTGAAGCAGAAGACAAAGCATCAATAAAGGTATAACATGACTCGCACTTGTTTTGTTTTAAAACTTATATGCCAAGGTGACTGCGTTGTTAAGGTATTTTCATCTGTTCAATATTCTCAGATGTGTGCTGTCAAAGCAGGAGGAATGATGTCTCTGGCTATTGATAATTGCGGGACCCTATGGATGTGGGGAAACATCCCACAAGAAAGCAAAGAAGGTGGGATATCTCTTGTAAGCAGTTTCACACCAACACCAGTCTGGGATTTTCACGGTCGAACTGTTGTCAAGGTTTCATGTGGAAACGAGCATGTCGTAGCTCTGGTTAGTGCTATAGACTCACACGAGGATGAAAATCTACTATGCTACTCTTGGGGTTATAACAGCCATGGCCAATTAGGTTTGGGGGATAGGCAGAGCAGGCTGCGTCCAGAAGTTGTAAAAATACTTGACGAGGAGTCTCCTTGGACAATTTATGAGGTAGCATGTGGTGCCTTTCACACTGCTCTGCTTGCTCACAAAAAGAAACCTGATGGCACATTAGAAAGCATGTGCTGGACCTTTGGCCTTGGTGAGAATGGCCAACTTGGACACGGAACAACGCAAAGCACTTTATTTCCCACTCCTATTAAAGAATTGCCACAATGCATATATCTTATTTCTGTTGACTGTGGCTTGTTTCATACAAGTGTTGTGTCCTCAACTGGGGACGTGTGGTCATGGGGAATGGAGAAGGGTCTTGGCTTATGTCCTGATGCTAATCGTGCTGAAACAAATTCTGGTGGTGACGCCCTCTCTCCTCTTCTCATCTCATGCAATTTTCATCAACCCATTTTTCCGGGTCCCGTTAAAGTTGTGTGTGGGGCGGCACATACTGTTGTTGTTGCTCAGGAGGGACATAAGGTGTGGTCTTGGGGTAGGGGAAGGAGTGGAGTCCTTGGGAATGGAAAAGAAATGGATAGTTACACTCCCACCATTGTTCTGTGGCCTCCAACAATTGAGGGTCTCAAAGAAGAGGAATTAAATAGCTCTGATGAGCAAGATAAGGTCAGAGAAAAAAACCCCGAAATAATAGCAGAAACAGATGAGAAATTATCCACGGCGTTGAATGAGCTGAAGCTGCTTCAAACAAAGCTATCTATAATGGAGAAATATGCTAGTATACTTCATGGTTCAATTTTTGGAAAACCTTTTAATGAGCAAGATATCCCTGTTTCAATGCAGAATTCGGGTTCAATGGATATTGCAAAAGAATGGGAGAACATGTTAGAGGCAGCAGATGATAGGAAGCTAGTTAGGATGGAAATGTTTTACCGTGACATGCTAACTGGTGTGAAAGATAAATTAATGAAGAGAAAGATCAAAGAAATTATAAAGGAGTGTCTCCAATCTTGGTAA
Protein sequence

>MS.gene40288.t1

MEDAGSYPNPDKLSHKIVDIAAGESHTLLLTGDGSVYCWGRGMFGRLGNGSQQDELFPKKLNFGNPNGTKHSVKIVGIAAGSYHSLALAEDGSVWCWGYNICILNMLGEDSHDSLVPCLLSRFHELQPPNSSTDPSEAEDKASIKMCAVKAGGMMSLAIDNCGTLWMWGNIPQESKEGGISLVSSFTPTPVWDFHGRTVVKVSCGNEHVVALVSAIDSHEDENLLCYSWGYNSHGQLGLGDRQSRLRPEVVKILDEESPWTIYEVACGAFHTALLAHKKKPDGTLESMCWTFGLGENGQLGHGTTQSTLFPTPIKELPQCIYLISVDCGLFHTSVVSSTGDVWSWGMEKGLGLCPDANRAETNSGGDALSPLLISCNFHQPIFPGPVKVVCGAAHTVVVAQEGHKVWSWGRGRSGVLGNGKEMDSYTPTIVLWPPTIEGLKEEELNSSDEQDKVREKNPEIIAETDEKLSTALNELKLLQTKLSIMEKYASILHGSIFGKPFNEQDIPVSMQNSGSMDIAKEWENMLEAADDRKLVRMEMFYRDMLTGVKDKLMKRKIKEIIKECLQSW