AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049150.t1 MTR_8g104120 94.502 582 11 3 1 567 1 576 0.0 1117
MS.gene049150.t1 MTR_8g104110 88.889 585 40 7 1 567 1 578 0.0 1041
MS.gene049150.t1 MTR_8g104130 77.778 585 93 6 1 567 1 566 0.0 877
MS.gene049150.t1 MTR_6g084680 66.332 597 162 7 4 567 7 597 0.0 749
MS.gene049150.t1 MTR_1g111250 53.381 562 214 11 9 548 12 547 0.0 571
MS.gene049150.t1 MTR_1g115140 29.709 515 303 9 52 544 27 504 1.11e-70 236
MS.gene049150.t1 MTR_1g115175 29.537 518 310 11 52 550 23 504 1.43e-68 231
MS.gene049150.t1 MTR_1g115190 30.948 517 298 11 52 544 24 505 2.50e-67 228
MS.gene049150.t1 MTR_1g077660 36.066 366 197 10 53 398 34 382 5.82e-67 225
MS.gene049150.t1 MTR_4g098570 32.290 511 288 11 52 544 35 505 1.49e-66 226
MS.gene049150.t1 MTR_5g014310 31.346 520 288 12 52 544 43 520 3.76e-64 219
MS.gene049150.t1 MTR_1g077670 33.514 370 206 8 48 398 41 389 2.22e-60 207
MS.gene049150.t1 MTR_2g087288 34.049 326 182 7 66 370 37 350 1.27e-57 199
MS.gene049150.t1 MTR_4g098610 30.920 511 295 10 52 544 35 505 5.01e-56 197
MS.gene049150.t1 MTR_2g087285 33.528 343 193 7 48 372 26 351 1.20e-54 191
MS.gene049150.t1 MTR_4g051575 32.184 348 207 6 43 372 19 355 1.79e-54 191
MS.gene049150.t1 MTR_7g106260 33.728 338 194 5 51 370 27 352 1.41e-51 184
MS.gene049150.t1 MTR_7g094770 31.672 341 196 11 71 388 61 387 8.03e-48 173
MS.gene049150.t1 MTR_4g051575 28.986 207 137 2 166 372 25 221 9.95e-27 111
MS.gene049150.t1 MTR_1g077870 67.073 82 12 1 117 183 189 270 1.20e-25 107
MS.gene049150.t1 MTR_6g015325 62.069 87 15 2 120 191 7 90 1.46e-24 98.6
MS.gene049150.t1 MTR_0710s0020 39.623 159 76 4 52 191 24 181 1.86e-18 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049150.t1 AT3G18440 58.462 585 181 9 6 545 3 570 0.0 651
MS.gene049150.t1 AT1G18420 55.282 568 213 11 9 548 27 581 0.0 598
MS.gene049150.t1 AT1G18420 59.127 504 178 8 67 548 1 498 0.0 587
MS.gene049150.t1 AT1G68600 56.863 510 175 11 63 548 45 533 0.0 541
MS.gene049150.t1 AT1G25480 51.337 561 225 10 17 548 4 545 0.0 534
MS.gene049150.t1 AT2G17470 51.858 565 210 12 23 561 19 547 0.0 533
MS.gene049150.t1 AT2G17470 51.964 560 207 12 28 561 2 525 0.0 532
MS.gene049150.t1 AT4G17970 31.120 527 318 12 57 553 30 541 3.57e-74 246
MS.gene049150.t1 AT5G46610 29.831 533 318 11 47 550 22 527 3.19e-72 241
MS.gene049150.t1 AT5G46600 30.112 538 307 12 44 544 20 525 7.85e-69 232
MS.gene049150.t1 AT1G08430 34.188 351 197 7 60 386 7 347 1.02e-63 217
MS.gene049150.t1 AT5G46610 27.725 523 318 13 47 550 22 503 4.52e-60 208
MS.gene049150.t1 AT1G08440 33.043 345 196 7 60 383 7 337 1.10e-59 206
MS.gene049150.t1 AT5G46610 27.853 517 302 11 47 550 22 480 1.22e-59 206
MS.gene049150.t1 AT4G00910 30.387 362 225 7 53 393 42 397 3.23e-58 202
MS.gene049150.t1 AT2G27240 30.564 337 209 5 60 378 7 336 1.11e-53 190
MS.gene049150.t1 AT2G27240 30.532 357 209 8 60 378 7 362 1.14e-52 187
MS.gene049150.t1 AT3G11680 35.494 324 179 6 66 371 36 347 6.51e-52 185
MS.gene049150.t1 AT3G11680 35.604 323 178 6 66 370 38 348 7.43e-52 185

Find 112 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTTGAAGCCTTATGAATA+TGG 0.174410 4.4:+2673258 MS.gene049150:intron
ACTTGGTGCTGCTGTATCTT+TGG 0.219480 4.4:+2673380 MS.gene049150:CDS
TATCTTCATCCATGTGAAAT+AGG 0.224414 4.4:-2674933 None:intergenic
GGGTGAGAAAGCTAACTTTA+AGG 0.239700 4.4:+2675272 MS.gene049150:CDS
TATTGCTACATTACGGTATC+TGG 0.258630 4.4:+2673303 MS.gene049150:CDS
TTATACTTTAGCTGAGAAAA+AGG 0.264645 4.4:+2671520 MS.gene049150:CDS
CGGTGGCCTCTGGCGGGTTT+TGG 0.270967 4.4:+2675316 MS.gene049150:CDS
CACGGGTGTTGCAACATCTT+TGG 0.277271 4.4:+2673470 MS.gene049150:CDS
ATGCATACTTTCTGAAATTC+AGG 0.279585 4.4:+2674245 MS.gene049150:CDS
AGTGGACTCATTTGAAGAAT+TGG 0.284232 4.4:+2675251 MS.gene049150:CDS
AGCTTGGTAAGTCAGAATTT+TGG 0.284312 4.4:-2673935 None:intergenic
AGAGGGTTTAACAGAGGATT+AGG 0.297132 4.4:+2673102 MS.gene049150:CDS
ATATCTGCATATATCCTATC+TGG 0.298144 4.4:+2673409 MS.gene049150:CDS
TCTTGTATTCTACACAATTA+AGG 0.310510 4.4:-2673903 None:intergenic
TGCTAAAATGGGTCTTGCTT+TGG 0.318097 4.4:+2671718 MS.gene049150:CDS
TCCTTGTAAACTCAGAGTTC+TGG 0.320441 4.4:+2674860 MS.gene049150:CDS
GATCTGTAGCCACTGTAAAC+TGG 0.326018 4.4:-2673970 None:intergenic
CAATTGAAGTTCAAAACAAT+TGG 0.343510 4.4:+2675007 MS.gene049150:CDS
CCACCGCGTCTTGCTGTTCA+AGG 0.347600 4.4:-2675299 None:intergenic
CTTGGTGCTGCTGTATCTTT+GGG 0.350864 4.4:+2673381 MS.gene049150:CDS
ATGATGATCACCACCCTTCA+TGG 0.354913 4.4:-2671555 None:intergenic
TCATCATTACTTTCATCTCT+TGG 0.366431 4.4:-2674898 None:intergenic
CTTTGAAGCCTTATGAATAT+GGG 0.373468 4.4:+2673259 MS.gene049150:intron
TCCATGTGAAATAGGCCTTT+AGG 0.373875 4.4:-2674925 None:intergenic
GCGCAACACTCTTGCTCCTT+CGG 0.378158 4.4:-2674725 None:intergenic
GGTTATTCTCGTATAGGAAA+TGG 0.382637 4.4:+2671578 MS.gene049150:CDS
AGCAAGGCTTCAAAATTTAG+TGG 0.384771 4.4:+2675233 MS.gene049150:CDS
CATCATGGTTATTCTCGTAT+AGG 0.388681 4.4:+2671572 MS.gene049150:CDS
GATTACTTATTGCTACATTA+CGG 0.393061 4.4:+2673296 MS.gene049150:CDS
GTGGACTCATTTGAAGAATT+GGG 0.396405 4.4:+2675252 MS.gene049150:CDS
CAGCAAGACGCGGTGGCCTC+TGG 0.399863 4.4:+2675306 MS.gene049150:CDS
GCAAGAGTGTTGCGCGAACT+TGG 0.410191 4.4:+2674733 MS.gene049150:CDS
TCTAAGACATTGTGCATTCA+TGG 0.410766 4.4:+2674206 MS.gene049150:CDS
GCACCAAAGTTAGCGAAATC+AGG 0.416566 4.4:+2671488 MS.gene049150:CDS
GATCCTGATTTCGCTAACTT+TGG 0.426719 4.4:-2671491 None:intergenic
CCTTGTAAACTCAGAGTTCT+GGG 0.428484 4.4:+2674861 MS.gene049150:CDS
GGAGGACTTGCTGTCGGAAT+GGG 0.436199 4.4:+2673138 MS.gene049150:CDS
GTTTAACTACTTCAAATCCT+AGG 0.438117 4.4:+2675347 MS.gene049150:CDS
AATTGAAGTTCAAAACAATT+GGG 0.458526 4.4:+2675008 MS.gene049150:CDS
TACAAGTAAAGAAGACTCAT+TGG 0.458825 4.4:+2674005 MS.gene049150:CDS
ATCAGCATTGGCAGGAGAAT+GGG 0.461506 4.4:+2673167 MS.gene049150:CDS
ACCAGAAGTCAAAGCAAAAG+AGG 0.466634 4.4:+2675137 MS.gene049150:CDS
CAAGACGCGGTGGCCTCTGG+CGG 0.471405 4.4:+2675309 MS.gene049150:CDS
TATCAGCATTGGCAGGAGAA+TGG 0.471652 4.4:+2673166 MS.gene049150:CDS
TGCATATATCCTATCTGGGC+TGG 0.472223 4.4:+2673414 MS.gene049150:CDS
GAGGGTTTAACAGAGGATTA+GGG 0.474453 4.4:+2673103 MS.gene049150:CDS
AAAACATGTCTCTTCTCAGC+TGG 0.479127 4.4:-2674676 None:intergenic
CCCAGAACTCTGAGTTTACA+AGG 0.479823 4.4:-2674861 None:intergenic
ACAAAATGCTTAACTATCCA+TGG 0.482446 4.4:+2674157 MS.gene049150:CDS
AAGAATTATGTCAAAGTAAG+CGG 0.491923 4.4:+2674180 MS.gene049150:CDS
TGGAGGACTTGCTGTCGGAA+TGG 0.492246 4.4:+2673137 MS.gene049150:CDS
CACCGCGTCTTGCTGTTCAA+GGG 0.498901 4.4:-2675298 None:intergenic
GGTTTGTAGTAAACATGAGC+AGG 0.510304 4.4:-2675117 None:intergenic
AACTCAGAGTTCTGGGAGAT+CGG 0.510626 4.4:+2674868 MS.gene049150:CDS
AAATCCTCTCCAGCCCAGAT+AGG 0.512204 4.4:-2673423 None:intergenic
AGAATTATGTCAAAGTAAGC+GGG 0.515041 4.4:+2674181 MS.gene049150:CDS
CATTACTTTCATCTCTTGGA+CGG 0.515706 4.4:-2674894 None:intergenic
ATCTGTAGCCACTGTAAACT+GGG 0.516939 4.4:-2673969 None:intergenic
AAGACGCGGTGGCCTCTGGC+GGG 0.520846 4.4:+2675310 MS.gene049150:CDS
AGTAATGATGATCATCCTAA+AGG 0.524199 4.4:+2674910 MS.gene049150:CDS
ACTTTGACATAATTCTTCCA+TGG 0.530519 4.4:-2674174 None:intergenic
ACCGCGTCTTGCTGTTCAAG+GGG 0.530520 4.4:-2675297 None:intergenic
GGAAAGACTTCTATCCATGA+AGG 0.532105 4.4:+2671541 MS.gene049150:CDS
ACACGGAACCCATATTCATA+AGG 0.533524 4.4:-2673267 None:intergenic
GTAGTTGGGATTTGCTGTGT+GGG 0.535344 4.4:+2674116 MS.gene049150:intron
CTTAAGAGGGTAGGTTCCGA+AGG 0.535826 4.4:+2674709 MS.gene049150:CDS
CAGGGGCAACTCTGAACAGA+GGG 0.539129 4.4:+2673085 MS.gene049150:intron
TGCTTGTGAAACAAATGTCT+TGG 0.539539 4.4:+2675094 MS.gene049150:CDS
CTCAATGAGCTTAAGAGGGT+AGG 0.551849 4.4:+2674700 MS.gene049150:CDS
ACAAGAGGAGGAATCTAAGA+TGG 0.555906 4.4:+2671613 MS.gene049150:CDS
CACTTAGAGACTTGTACTCT+AGG 0.557832 4.4:-2674963 None:intergenic
GTCGTCTTTGAATTCAGTAT+AGG 0.562228 4.4:+2671821 MS.gene049150:CDS
CTGGGTCATCAGCAGCAGCT+TGG 0.563319 4.4:-2673951 None:intergenic
AATGGGAGAGTTATCAGCAT+TGG 0.564616 4.4:+2673155 MS.gene049150:CDS
TGTAGTTGGGATTTGCTGTG+TGG 0.567271 4.4:+2674115 MS.gene049150:intron
TTCTGATAGAATTTGTAGCA+AGG 0.570985 4.4:+2675217 MS.gene049150:CDS
ACATTGTGCATTCATGGTCA+TGG 0.573321 4.4:+2674212 MS.gene049150:CDS
AAATGGGTCGTTCTGATCCA+AGG 0.574359 4.4:+2671681 MS.gene049150:CDS
TATCTGCATATATCCTATCT+GGG 0.575447 4.4:+2673410 MS.gene049150:CDS
GGATTAGGGACATTGTCAGC+TGG 0.577735 4.4:+2673117 MS.gene049150:CDS
GGAGAGTTATCAGCATTGGC+AGG 0.580507 4.4:+2673159 MS.gene049150:CDS
TCCTAAAGGCCTATTTCACA+TGG 0.586405 4.4:+2674924 MS.gene049150:CDS
ATGAAGGGTGGTGATCATCA+TGG 0.589330 4.4:+2671557 MS.gene049150:CDS
ACGGTATCTGGTTATCATAG+TGG 0.592869 4.4:+2673315 MS.gene049150:CDS
AGAGTGACGGCTAAAATCGA+AGG 0.594752 4.4:-2671774 None:intergenic
TTCATGGTCATGGCTATGCA+TGG 0.595719 4.4:+2674222 MS.gene049150:CDS
CTACCCTCTTAAGCTCATTG+AGG 0.600615 4.4:-2674699 None:intergenic
TCAGCTGGAGGACTTGCTGT+CGG 0.601708 4.4:+2673132 MS.gene049150:CDS
GGTGTTGCAACATCTTTGGA+AGG 0.606641 4.4:+2673474 MS.gene049150:CDS
GAAAGACTTCTATCCATGAA+GGG 0.612843 4.4:+2671542 MS.gene049150:CDS
TGGTTTGCTACAAGAACAAG+AGG 0.614623 4.4:+2671598 MS.gene049150:CDS
TTTCCTCAATGAGCTTAAGA+GGG 0.626391 4.4:+2674696 MS.gene049150:CDS
ATATCCTATCTGGGCTGGAG+AGG 0.638574 4.4:+2673419 MS.gene049150:CDS
GAATTCAAAGACGACGACGA+CGG 0.642329 4.4:-2671813 None:intergenic
TGGCAATAGGAGGCACAGCA+TGG 0.643902 4.4:-2675062 None:intergenic
GAGTGACGGCTAAAATCGAA+GGG 0.657783 4.4:-2671773 None:intergenic
GCAGGGGCAACTCTGAACAG+AGG 0.659233 4.4:+2673084 MS.gene049150:intron
TTAGGGACATTGTCAGCTGG+AGG 0.660740 4.4:+2673120 MS.gene049150:CDS
CTGAACAGAGGGTTTAACAG+AGG 0.665152 4.4:+2673096 MS.gene049150:CDS
TAATTGTGTAGAATACAAGA+AGG 0.665618 4.4:+2673906 MS.gene049150:CDS
GAATTATGTCAAAGTAAGCG+GGG 0.667762 4.4:+2674182 MS.gene049150:CDS
GAATAGCCCAAACAGAGTGA+CGG 0.668186 4.4:-2671787 None:intergenic
CCGCGTCTTGCTGTTCAAGG+GGG 0.674384 4.4:-2675296 None:intergenic
CCTTGAACAGCAAGACGCGG+TGG 0.679970 4.4:+2675299 MS.gene049150:CDS
TTTGCTACAAGAACAAGAGG+AGG 0.680569 4.4:+2671601 MS.gene049150:CDS
GCTGTGTGGGAACCACCTCA+TGG 0.682126 4.4:+2674129 MS.gene049150:CDS
AATAAGTAATCAAGAACACA+CGG 0.696265 4.4:-2673284 None:intergenic
GCTGATGACCCAGTTTACAG+TGG 0.697546 4.4:+2673961 MS.gene049150:CDS
AGACTTCTATCCATGAAGGG+TGG 0.700795 4.4:+2671545 MS.gene049150:CDS
AAGATGGAGAAACTAGACAG+AGG 0.705496 4.4:+2674769 MS.gene049150:CDS
TTTGCTGTTTGATGTACACG+AGG 0.709942 4.4:+2674795 MS.gene049150:CDS
AGAACTCTGAGTTTACAAGG+AGG 0.792854 4.4:-2674858 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAATTATTTGATTAAG+TGG + chr4.4:2672470-2672489 MS.gene049150:intron 10.0%
!! AATTAATTATTTGATTAAGT+GGG + chr4.4:2672471-2672490 MS.gene049150:intron 10.0%
!! AATTTGATATTTCGATAAAT+TGG + chr4.4:2672387-2672406 MS.gene049150:intron 15.0%
!! ATTTGATATTTCGATAAATT+GGG + chr4.4:2672388-2672407 MS.gene049150:intron 15.0%
!! TTGATTAATGAAAATAAGTA+CGG + chr4.4:2672022-2672041 MS.gene049150:intron 15.0%
!!! AAAATGTACATTAAAGTTTT+TGG + chr4.4:2674381-2674400 MS.gene049150:intron 15.0%
!!! TCTTTTGATAAAAAATTTCA+CGG + chr4.4:2673452-2673471 MS.gene049150:CDS 15.0%
!!! TTCTTTAAGAAAAATCAAAA+GGG - chr4.4:2671753-2671772 None:intergenic 15.0%
!! AAAACTACTAAAGTAGTATT+AGG - chr4.4:2672809-2672828 None:intergenic 20.0%
!! AATTGAAGTTCAAAACAATT+GGG + chr4.4:2675008-2675027 MS.gene049150:CDS 20.0%
!! ACATCTTTAATACAAAATGT+TGG + chr4.4:2673012-2673031 MS.gene049150:intron 20.0%
!! ATTAATTACACATGAAAAGA+GGG - chr4.4:2672738-2672757 None:intergenic 20.0%
!! TTAAAACTATGAAATTGACA+TGG + chr4.4:2674453-2674472 MS.gene049150:intron 20.0%
!! TTTGATATTTCGATAAATTG+GGG + chr4.4:2672389-2672408 MS.gene049150:intron 20.0%
!!! ATAGTTTTAATCACAAATGA+TGG - chr4.4:2674443-2674462 None:intergenic 20.0%
!!! ATTTTATGATCAAAATGCAA+TGG + chr4.4:2673055-2673074 MS.gene049150:intron 20.0%
!!! CTTTTGATAAAAAATTTCAC+GGG + chr4.4:2673453-2673472 MS.gene049150:CDS 20.0%
!!! GTTCTTTAAGAAAAATCAAA+AGG - chr4.4:2671754-2671773 None:intergenic 20.0%
!!! TCTTTTCTGTAACATTTTTT+TGG + chr4.4:2674287-2674306 MS.gene049150:intron 20.0%
!!! TTTTGTATTAAAGATGTTTC+AGG - chr4.4:2673009-2673028 None:intergenic 20.0%
! AAAAATCAAAAGGGAGATAA+GGG - chr4.4:2671744-2671763 None:intergenic 25.0%
! AAGAATTATGTCAAAGTAAG+CGG + chr4.4:2674180-2674199 MS.gene049150:CDS 25.0%
! AAGTATATAGAAAAAGACAC+AGG + chr4.4:2672900-2672919 MS.gene049150:intron 25.0%
! AATAAGTAATCAAGAACACA+CGG - chr4.4:2673287-2673306 None:intergenic 25.0%
! AATGTTGTGTTTACAACAAT+TGG + chr4.4:2672666-2672685 MS.gene049150:intron 25.0%
! AATTATTTGATTAAGTGGGT+CGG + chr4.4:2672475-2672494 MS.gene049150:intron 25.0%
! AATTGCAAACAACGTATTAT+TGG - chr4.4:2671875-2671894 None:intergenic 25.0%
! AGATAGATAGTACAAAGAAA+AGG + chr4.4:2672073-2672092 MS.gene049150:intron 25.0%
! ATGACACACTAAAAATATAC+AGG - chr4.4:2674343-2674362 None:intergenic 25.0%
! ATTATCAGTACATTCATTGT+TGG + chr4.4:2673204-2673223 MS.gene049150:intron 25.0%
! ATTGCAAACAACGTATTATT+GGG - chr4.4:2671874-2671893 None:intergenic 25.0%
! ATTTGCGGATACATAAAAAA+TGG - chr4.4:2673676-2673695 None:intergenic 25.0%
! CAATTGAAGTTCAAAACAAT+TGG + chr4.4:2675007-2675026 MS.gene049150:CDS 25.0%
! GATTAATTACACATGAAAAG+AGG - chr4.4:2672739-2672758 None:intergenic 25.0%
! GATTACTTATTGCTACATTA+CGG + chr4.4:2673296-2673315 MS.gene049150:CDS 25.0%
! GTTACTATTACATTTAGTGT+AGG + chr4.4:2673581-2673600 MS.gene049150:intron 25.0%
! TAAGTTAAAATCCAGTCAAA+TGG - chr4.4:2671993-2672012 None:intergenic 25.0%
! TAATTGTGTAGAATACAAGA+AGG + chr4.4:2673906-2673925 MS.gene049150:CDS 25.0%
! TCTTGTATTCTACACAATTA+AGG - chr4.4:2673906-2673925 None:intergenic 25.0%
! TGGAAACAAAGTAAAAAAGA+TGG + chr4.4:2674753-2674772 MS.gene049150:CDS 25.0%
! TTAGTAGTTTATGGTATTTG+CGG - chr4.4:2673691-2673710 None:intergenic 25.0%
! TTATACTTTAGCTGAGAAAA+AGG + chr4.4:2671520-2671539 MS.gene049150:CDS 25.0%
! TTGATATTTCGATAAATTGG+GGG + chr4.4:2672390-2672409 MS.gene049150:intron 25.0%
!!! ATCATTTTTGCTGCTAAAAT+GGG + chr4.4:2671707-2671726 MS.gene049150:CDS 25.0%
AACGTTATTCTGCTAAATCA+CGG + chr4.4:2673790-2673809 MS.gene049150:intron 30.0%
AAGTACGGTATTGTTTGATA+GGG + chr4.4:2672037-2672056 MS.gene049150:intron 30.0%
AATTACTTATGCAGAAGCAA+TGG - chr4.4:2672859-2672878 None:intergenic 30.0%
AATTCGTCCTTGAATTTACA+CGG - chr4.4:2672431-2672450 None:intergenic 30.0%
ACAAAATGCTTAACTATCCA+TGG + chr4.4:2674157-2674176 MS.gene049150:CDS 30.0%
ACATCCATTGAACAATTACA+TGG - chr4.4:2673555-2673574 None:intergenic 30.0%
ACCATAAACTACTAAAGTTC+AGG + chr4.4:2673696-2673715 MS.gene049150:intron 30.0%
ACCTGAACTTTAGTAGTTTA+TGG - chr4.4:2673700-2673719 None:intergenic 30.0%
ACTTTGACATAATTCTTCCA+TGG - chr4.4:2674177-2674196 None:intergenic 30.0%
AGAATTATGTCAAAGTAAGC+GGG + chr4.4:2674181-2674200 MS.gene049150:CDS 30.0%
AGTAATGATGATCATCCTAA+AGG + chr4.4:2674910-2674929 MS.gene049150:CDS 30.0%
AGTACCATGTAATTGTTCAA+TGG + chr4.4:2673548-2673567 MS.gene049150:intron 30.0%
ATATCTGCATATATCCTATC+TGG + chr4.4:2673409-2673428 MS.gene049150:CDS 30.0%
ATGGAATTATCCTAAAGCAT+TGG + chr4.4:2674472-2674491 MS.gene049150:intron 30.0%
ATGTGTTTGTGATTGTAGTT+GGG + chr4.4:2674102-2674121 MS.gene049150:intron 30.0%
ATTATTTGATTAAGTGGGTC+GGG + chr4.4:2672476-2672495 MS.gene049150:intron 30.0%
ATTCATAAGGCTTCAAAGTT+GGG - chr4.4:2673257-2673276 None:intergenic 30.0%
CAAACACATAATTGACAGTA+CGG - chr4.4:2671937-2671956 None:intergenic 30.0%
GAAAAATCAAAAGGGAGATA+AGG - chr4.4:2671745-2671764 None:intergenic 30.0%
GATAAATTGGGGGAAAAATT+TGG + chr4.4:2672400-2672419 MS.gene049150:intron 30.0%
GTTACTCAATTCCATACATT+TGG - chr4.4:2673821-2673840 None:intergenic 30.0%
TAAGTACGGTATTGTTTGAT+AGG + chr4.4:2672036-2672055 MS.gene049150:intron 30.0%
TAATATAGTCCCAATGCTTT+AGG - chr4.4:2674485-2674504 None:intergenic 30.0%
TACAAGTAAAGAAGACTCAT+TGG + chr4.4:2674005-2674024 MS.gene049150:CDS 30.0%
TATCTGCATATATCCTATCT+GGG + chr4.4:2673410-2673429 MS.gene049150:CDS 30.0%
TATCTTCATCCATGTGAAAT+AGG - chr4.4:2674936-2674955 None:intergenic 30.0%
TATTCATAAGGCTTCAAAGT+TGG - chr4.4:2673258-2673277 None:intergenic 30.0%
TCAATTCCATACATTTGGAT+TGG - chr4.4:2673816-2673835 None:intergenic 30.0%
TCATCATTACTTTCATCTCT+TGG - chr4.4:2674901-2674920 None:intergenic 30.0%
TGTAATTGTTCAATGGATGT+AGG + chr4.4:2673555-2673574 MS.gene049150:intron 30.0%
TGTTGTAAACACAACATTCA+TGG - chr4.4:2672664-2672683 None:intergenic 30.0%
TTCTGATAGAATTTGTAGCA+AGG + chr4.4:2675217-2675236 MS.gene049150:CDS 30.0%
TTTAATCACAAATGATGGCT+GGG - chr4.4:2674438-2674457 None:intergenic 30.0%
! AAAATGCAATGGAATTTTGC+AGG + chr4.4:2673066-2673085 MS.gene049150:intron 30.0%
! AAATGCAATGGAATTTTGCA+GGG + chr4.4:2673067-2673086 MS.gene049150:intron 30.0%
! AGCATTTTGTATTTACCATG+AGG - chr4.4:2674147-2674166 None:intergenic 30.0%
! ATTTTGTATTTACCATGAGG+TGG - chr4.4:2674144-2674163 None:intergenic 30.0%
! TGGAATTATCCTAAAGCATT+GGG + chr4.4:2674473-2674492 MS.gene049150:intron 30.0%
! TTGCTGAACTTACATTTTCA+GGG + chr4.4:2673866-2673885 MS.gene049150:intron 30.0%
! TTTCACAAGCATGTTTTCAT+TGG - chr4.4:2675085-2675104 None:intergenic 30.0%
! TTTTAATCACAAATGATGGC+TGG - chr4.4:2674439-2674458 None:intergenic 30.0%
!! ACTTTGAAGCCTTATGAATA+TGG + chr4.4:2673258-2673277 MS.gene049150:intron 30.0%
!! ATGCATACTTTCTGAAATTC+AGG + chr4.4:2674245-2674264 MS.gene049150:CDS 30.0%
!! CTTTGAAGCCTTATGAATAT+GGG + chr4.4:2673259-2673278 MS.gene049150:intron 30.0%
!! GATCATTTTTGCTGCTAAAA+TGG + chr4.4:2671706-2671725 MS.gene049150:CDS 30.0%
!! TAGAAGTGTTGTCACAAATA+GGG + chr4.4:2674503-2674522 MS.gene049150:intron 30.0%
!! TTAGAAGTGTTGTCACAAAT+AGG + chr4.4:2674502-2674521 MS.gene049150:intron 30.0%
AAATTCGTCCTTGAATTTGC+AGG + chr4.4:2672112-2672131 MS.gene049150:intron 35.0%
AATTCGTCCTTGAATTTGCA+GGG + chr4.4:2672113-2672132 MS.gene049150:intron 35.0%
ACGTTGTTTGCAATTTGCAT+TGG + chr4.4:2671880-2671899 MS.gene049150:intron 35.0%
ACTACTAAAGTTCAGGTCTT+TGG + chr4.4:2673703-2673722 MS.gene049150:intron 35.0%
AGCAAGGCTTCAAAATTTAG+TGG + chr4.4:2675233-2675252 MS.gene049150:CDS 35.0%
AGTGTCAAAAGCAAAGCAAA+TGG - chr4.4:2672558-2672577 None:intergenic 35.0%
ATCACTACAGAGATATTGGA+TGG + chr4.4:2672326-2672345 MS.gene049150:intron 35.0%
ATGGAAGGAATGAGTAAAAG+AGG + chr4.4:2672168-2672187 MS.gene049150:intron 35.0%
CAACTACAATCACAAACACA+TGG - chr4.4:2674103-2674122 None:intergenic 35.0%
CATCATGGTTATTCTCGTAT+AGG + chr4.4:2671572-2671591 MS.gene049150:CDS 35.0%
CATGTGTTTGTGATTGTAGT+TGG + chr4.4:2674101-2674120 MS.gene049150:intron 35.0%
CATTACTTTCATCTCTTGGA+CGG - chr4.4:2674897-2674916 None:intergenic 35.0%
CTGAAAATGTAAGTTCAGCA+AGG - chr4.4:2673867-2673886 None:intergenic 35.0%
GAAAGACTTCTATCCATGAA+GGG + chr4.4:2671542-2671561 MS.gene049150:CDS 35.0%
GAATTATGTCAAAGTAAGCG+GGG + chr4.4:2674182-2674201 MS.gene049150:CDS 35.0%
GAGCTGTCTTCTTGATATAT+AGG + chr4.4:2674651-2674670 MS.gene049150:intron 35.0%
GAGTAAAAGAGGGGTAAAAT+TGG + chr4.4:2672179-2672198 MS.gene049150:intron 35.0%
GGTATTGTTTGATAGGGTTA+GGG + chr4.4:2672043-2672062 MS.gene049150:intron 35.0%
GGTTATTCTCGTATAGGAAA+TGG + chr4.4:2671578-2671597 MS.gene049150:CDS 35.0%
GTATTGTTTGATAGGGTTAG+GGG + chr4.4:2672044-2672063 MS.gene049150:intron 35.0%
GTCGTCTTTGAATTCAGTAT+AGG + chr4.4:2671821-2671840 MS.gene049150:CDS 35.0%
GTGGACTCATTTGAAGAATT+GGG + chr4.4:2675252-2675271 MS.gene049150:CDS 35.0%
TATTGCTACATTACGGTATC+TGG + chr4.4:2673303-2673322 MS.gene049150:CDS 35.0%
TGCATAACAATGTCATGTCT+CGG + chr4.4:2672634-2672653 MS.gene049150:intron 35.0%
TGCTTGTGAAACAAATGTCT+TGG + chr4.4:2675094-2675113 MS.gene049150:CDS 35.0%
TGGAAGGAATGAGTAAAAGA+GGG + chr4.4:2672169-2672188 MS.gene049150:intron 35.0%
TGTAGGATAGCTACTGTAAT+AGG + chr4.4:2673598-2673617 MS.gene049150:intron 35.0%
TTGTTGCGTTTCCATCAAAT+CGG + chr4.4:2672234-2672253 MS.gene049150:intron 35.0%
TTTCCTCAATGAGCTTAAGA+GGG + chr4.4:2674696-2674715 MS.gene049150:CDS 35.0%
! AATGCAATGGAATTTTGCAG+GGG + chr4.4:2673068-2673087 MS.gene049150:intron 35.0%
! AGATTTTTGCTCATTGCACT+TGG + chr4.4:2673363-2673382 MS.gene049150:CDS 35.0%
! AGCATGTTTTCATTGGCAAT+AGG - chr4.4:2675078-2675097 None:intergenic 35.0%
! AGCTTGGTAAGTCAGAATTT+TGG - chr4.4:2673938-2673957 None:intergenic 35.0%
! AGTGGACTCATTTGAAGAAT+TGG + chr4.4:2675251-2675270 MS.gene049150:CDS 35.0%
! ATGGACGCTTGTTAAATTCA+GGG + chr4.4:2672361-2672380 MS.gene049150:intron 35.0%
! ATGTTTTCATTGGCAATAGG+AGG - chr4.4:2675075-2675094 None:intergenic 35.0%
! CAATTATGAGAAAGCGTGTT+TGG + chr4.4:2672512-2672531 MS.gene049150:intron 35.0%
! CTTGCTGAACTTACATTTTC+AGG + chr4.4:2673865-2673884 MS.gene049150:intron 35.0%
! TAAAGTTCAGGTCTTTGGAA+TGG + chr4.4:2673708-2673727 MS.gene049150:intron 35.0%
! TCTAAGACATTGTGCATTCA+TGG + chr4.4:2674206-2674225 MS.gene049150:CDS 35.0%
! TGCTGAACTTACATTTTCAG+GGG + chr4.4:2673867-2673886 MS.gene049150:intron 35.0%
! TGGTAAGTCAGAATTTTGGA+TGG - chr4.4:2673934-2673953 None:intergenic 35.0%
! TTTTCCTCAATGAGCTTAAG+AGG + chr4.4:2674695-2674714 MS.gene049150:CDS 35.0%
!! AAAGTTCAGGTCTTTGGAAT+GGG + chr4.4:2673709-2673728 MS.gene049150:intron 35.0%
!! AGAAGTGTTGTCACAAATAG+GGG + chr4.4:2674504-2674523 MS.gene049150:intron 35.0%
!! GATGTTTCAGGTGTTACTTA+CGG - chr4.4:2672997-2673016 None:intergenic 35.0%
!!! ATTGGTTTTGCCATCCAAAA+AGG + chr4.4:2672684-2672703 MS.gene049150:intron 35.0%
!!! TTTTGACACTTTTGACTTCC+TGG + chr4.4:2672568-2672587 MS.gene049150:intron 35.0%
AAAACATGTCTCTTCTCAGC+TGG - chr4.4:2674679-2674698 None:intergenic 40.0%
AACAAGTCCCTGCAAATTCA+AGG - chr4.4:2672123-2672142 None:intergenic 40.0%
AAGATGGAGAAACTAGACAG+AGG + chr4.4:2674769-2674788 MS.gene049150:CDS 40.0%
AATGGGAGAGTTATCAGCAT+TGG + chr4.4:2673155-2673174 MS.gene049150:CDS 40.0%
AATTGGGGGAAAAATTTGGC+TGG + chr4.4:2672404-2672423 MS.gene049150:intron 40.0%
ACAAGAGGAGGAATCTAAGA+TGG + chr4.4:2671613-2671632 MS.gene049150:CDS 40.0%
ACACGGAACCCATATTCATA+AGG - chr4.4:2673270-2673289 None:intergenic 40.0%
ACATTGTGCATTCATGGTCA+TGG + chr4.4:2674212-2674231 MS.gene049150:CDS 40.0%
ACCAGAAGTCAAAGCAAAAG+AGG + chr4.4:2675137-2675156 MS.gene049150:CDS 40.0%
ACGGTATCTGGTTATCATAG+TGG + chr4.4:2673315-2673334 MS.gene049150:CDS 40.0%
ACTACAGAGATATTGGATGG+AGG + chr4.4:2672329-2672348 MS.gene049150:intron 40.0%
AGAACTCTGAGTTTACAAGG+AGG - chr4.4:2674861-2674880 None:intergenic 40.0%
AGACACAGGTATATGACATG+TGG + chr4.4:2672914-2672933 MS.gene049150:intron 40.0%
AGAGGGTTTAACAGAGGATT+AGG + chr4.4:2673102-2673121 MS.gene049150:CDS 40.0%
ATCTGTAGCCACTGTAAACT+GGG - chr4.4:2673972-2673991 None:intergenic 40.0%
ATGTGTCTGAGTGAAATGTG+AGG + chr4.4:2672145-2672164 MS.gene049150:intron 40.0%
CACTTAGAGACTTGTACTCT+AGG - chr4.4:2674966-2674985 None:intergenic 40.0%
CAGCATCACTACAGAGATAT+TGG + chr4.4:2672322-2672341 MS.gene049150:intron 40.0%
CCTTGTAAACTCAGAGTTCT+GGG + chr4.4:2674861-2674880 MS.gene049150:CDS 40.0%
CGGTATTGTTTGATAGGGTT+AGG + chr4.4:2672042-2672061 MS.gene049150:intron 40.0%
CTACAGAGATATTGGATGGA+GGG + chr4.4:2672330-2672349 MS.gene049150:intron 40.0%
GAGGGTTTAACAGAGGATTA+GGG + chr4.4:2673103-2673122 MS.gene049150:CDS 40.0%
GATCCTGATTTCGCTAACTT+TGG - chr4.4:2671494-2671513 None:intergenic 40.0%
GCAGCAAAAATGATCTTCCT+TGG - chr4.4:2671701-2671720 None:intergenic 40.0%
GGAAAGACTTCTATCCATGA+AGG + chr4.4:2671541-2671560 MS.gene049150:CDS 40.0%
GGAAGGAATGAGTAAAAGAG+GGG + chr4.4:2672170-2672189 MS.gene049150:intron 40.0%
GGGTGAGAAAGCTAACTTTA+AGG + chr4.4:2675272-2675291 MS.gene049150:CDS 40.0%
GGTTTGTAGTAAACATGAGC+AGG - chr4.4:2675120-2675139 None:intergenic 40.0%
TCCATGTGAAATAGGCCTTT+AGG - chr4.4:2674928-2674947 None:intergenic 40.0%
TCCTAAAGGCCTATTTCACA+TGG + chr4.4:2674924-2674943 MS.gene049150:CDS 40.0%
TCCTTGTAAACTCAGAGTTC+TGG + chr4.4:2674860-2674879 MS.gene049150:CDS 40.0%
TGCTAAAATGGGTCTTGCTT+TGG + chr4.4:2671718-2671737 MS.gene049150:CDS 40.0%
TTTGCTACAAGAACAAGAGG+AGG + chr4.4:2671601-2671620 MS.gene049150:CDS 40.0%
! GATGGACGCTTGTTAAATTC+AGG + chr4.4:2672360-2672379 MS.gene049150:intron 40.0%
! GCTGAAAAAGCATGGGAAAT+GGG + chr4.4:2671665-2671684 MS.gene049150:CDS 40.0%
! TGCTGAAAAAGCATGGGAAA+TGG + chr4.4:2671664-2671683 MS.gene049150:CDS 40.0%
! TTTTAGCCGTCACTCTGTTT+GGG + chr4.4:2671781-2671800 MS.gene049150:CDS 40.0%
!! AAGTTCAGGTCTTTGGAATG+GGG + chr4.4:2673710-2673729 MS.gene049150:intron 40.0%
!! ATTTTAGCCGTCACTCTGTT+TGG + chr4.4:2671780-2671799 MS.gene049150:CDS 40.0%
!! TCCTCTTTTGCTTTGACTTC+TGG - chr4.4:2675141-2675160 None:intergenic 40.0%
!! TGGTTTGCTACAAGAACAAG+AGG + chr4.4:2671598-2671617 MS.gene049150:CDS 40.0%
!! TTTGCTGTTTGATGTACACG+AGG + chr4.4:2674795-2674814 MS.gene049150:CDS 40.0%
!!! TTTTGACTTCCTGGCATTAG+AGG + chr4.4:2672577-2672596 MS.gene049150:intron 40.0%
AAATGGGTCGTTCTGATCCA+AGG + chr4.4:2671681-2671700 MS.gene049150:CDS 45.0%
ACACATGAAAAGAGGGCAAG+CGG - chr4.4:2672731-2672750 None:intergenic 45.0%
ACCACTCTTCACCATTTGAC+TGG + chr4.4:2671979-2671998 MS.gene049150:intron 45.0%
ACCTTTCACGTAGGGTTCAA+AGG + chr4.4:2672606-2672625 MS.gene049150:intron 45.0%
AGACTTCTATCCATGAAGGG+TGG + chr4.4:2671545-2671564 MS.gene049150:CDS 45.0%
AGAGTGACGGCTAAAATCGA+AGG - chr4.4:2671777-2671796 None:intergenic 45.0%
AGCTCGTTGCTGAAAAAGCA+TGG + chr4.4:2671657-2671676 MS.gene049150:CDS 45.0%
ATGAAGGGTGGTGATCATCA+TGG + chr4.4:2671557-2671576 MS.gene049150:CDS 45.0%
ATGATGATCACCACCCTTCA+TGG - chr4.4:2671558-2671577 None:intergenic 45.0%
CCCAGAACTCTGAGTTTACA+AGG - chr4.4:2674864-2674883 None:intergenic 45.0%
CCTTTCACGTAGGGTTCAAA+GGG + chr4.4:2672607-2672626 MS.gene049150:intron 45.0%
CTACCCTCTTAAGCTCATTG+AGG - chr4.4:2674702-2674721 None:intergenic 45.0%
CTCAATGAGCTTAAGAGGGT+AGG + chr4.4:2674700-2674719 MS.gene049150:CDS 45.0%
CTGAACAGAGGGTTTAACAG+AGG + chr4.4:2673096-2673115 MS.gene049150:CDS 45.0%
CTTTCACGTAGGGTTCAAAG+GGG + chr4.4:2672608-2672627 MS.gene049150:intron 45.0%
GAATAGCCCAAACAGAGTGA+CGG - chr4.4:2671790-2671809 None:intergenic 45.0%
GAATTCAAAGACGACGACGA+CGG - chr4.4:2671816-2671835 None:intergenic 45.0%
GAGTGAAATGTGAGGATGGA+AGG + chr4.4:2672153-2672172 MS.gene049150:intron 45.0%
GAGTGACGGCTAAAATCGAA+GGG - chr4.4:2671776-2671795 None:intergenic 45.0%
GATCTGTAGCCACTGTAAAC+TGG - chr4.4:2673973-2673992 None:intergenic 45.0%
GCACCAAAGTTAGCGAAATC+AGG + chr4.4:2671488-2671507 MS.gene049150:CDS 45.0%
GTCTGAGTGAAATGTGAGGA+TGG + chr4.4:2672149-2672168 MS.gene049150:intron 45.0%
TACAACACAGCACAACATGC+AGG + chr4.4:2672290-2672309 MS.gene049150:intron 45.0%
TCACGGCCAATCCAAATGTA+TGG + chr4.4:2673807-2673826 MS.gene049150:intron 45.0%
TCCAGTCAAATGGTGAAGAG+TGG - chr4.4:2671983-2672002 None:intergenic 45.0%
TGCATATATCCTATCTGGGC+TGG + chr4.4:2673414-2673433 MS.gene049150:CDS 45.0%
TGGATGGAGGGATGAATTGA+TGG + chr4.4:2672342-2672361 MS.gene049150:intron 45.0%
TTCATGGTCATGGCTATGCA+TGG + chr4.4:2674222-2674241 MS.gene049150:CDS 45.0%
! GCTCGTTGCTGAAAAAGCAT+GGG + chr4.4:2671658-2671677 MS.gene049150:CDS 45.0%
! GGTGTTGCAACATCTTTGGA+AGG + chr4.4:2673474-2673493 MS.gene049150:CDS 45.0%
!! AACTCAGAGTTCTGGGAGAT+CGG + chr4.4:2674868-2674887 MS.gene049150:CDS 45.0%
!! ACTTGGTGCTGCTGTATCTT+TGG + chr4.4:2673380-2673399 MS.gene049150:CDS 45.0%
!! AGTTCAGGTCTTTGGAATGG+GGG + chr4.4:2673711-2673730 MS.gene049150:intron 45.0%
!! ATCAGCATTGGCAGGAGAAT+GGG + chr4.4:2673167-2673186 MS.gene049150:CDS 45.0%
!! CTTGGTGCTGCTGTATCTTT+GGG + chr4.4:2673381-2673400 MS.gene049150:CDS 45.0%
!! GTAGTTGGGATTTGCTGTGT+GGG + chr4.4:2674116-2674135 MS.gene049150:intron 45.0%
!! GTGTACAAGGACCGATTTGA+TGG - chr4.4:2672248-2672267 None:intergenic 45.0%
!! TATCAGCATTGGCAGGAGAA+TGG + chr4.4:2673166-2673185 MS.gene049150:CDS 45.0%
!! TGTAGTTGGGATTTGCTGTG+TGG + chr4.4:2674115-2674134 MS.gene049150:intron 45.0%
!!! TATCTATAAAAAAAATATTT+TGG + chr4.4:2672766-2672785 MS.gene049150:intron 5.0%
AAATCCTCTCCAGCCCAGAT+AGG - chr4.4:2673426-2673445 None:intergenic 50.0%
ACACAGCACAACATGCAGGA+CGG + chr4.4:2672294-2672313 MS.gene049150:intron 50.0%
AGGCTGTTGACCTTTCACGT+AGG + chr4.4:2672597-2672616 MS.gene049150:intron 50.0%
CAAATCGGTCCTTGTACACG+TGG + chr4.4:2672249-2672268 MS.gene049150:intron 50.0%
CACATGAAAAGAGGGCAAGC+GGG - chr4.4:2672730-2672749 None:intergenic 50.0%
CCCTTTGAACCCTACGTGAA+AGG - chr4.4:2672610-2672629 None:intergenic 50.0%
CTTAAGAGGGTAGGTTCCGA+AGG + chr4.4:2674709-2674728 MS.gene049150:CDS 50.0%
GCTGATGACCCAGTTTACAG+TGG + chr4.4:2673961-2673980 MS.gene049150:CDS 50.0%
GGATTAGGGACATTGTCAGC+TGG + chr4.4:2673117-2673136 MS.gene049150:CDS 50.0%
GGCTGTTGACCTTTCACGTA+GGG + chr4.4:2672598-2672617 MS.gene049150:intron 50.0%
GGGCAAAAAGTTGCGCAACT+AGG - chr4.4:2672710-2672729 None:intergenic 50.0%
GTCCTTGTACACGTGGTTGA+CGG + chr4.4:2672256-2672275 MS.gene049150:intron 50.0%
TCCTTGTACACGTGGTTGAC+GGG + chr4.4:2672257-2672276 MS.gene049150:intron 50.0%
TTAGGGACATTGTCAGCTGG+AGG + chr4.4:2673120-2673139 MS.gene049150:CDS 50.0%
! ATATCCTATCTGGGCTGGAG+AGG + chr4.4:2673419-2673438 MS.gene049150:CDS 50.0%
! CACGGGTGTTGCAACATCTT+TGG + chr4.4:2673470-2673489 MS.gene049150:CDS 50.0%
! CGCAACTAGGCCTTTTTGGA+TGG - chr4.4:2672697-2672716 None:intergenic 50.0%
! GGCTGGTCCGTGTAAATTCA+AGG + chr4.4:2672421-2672440 MS.gene049150:intron 50.0%
! GTTGCGCAACTAGGCCTTTT+TGG - chr4.4:2672701-2672720 None:intergenic 50.0%
! TTTTGTCCAAAACCCGCCAG+AGG - chr4.4:2675325-2675344 None:intergenic 50.0%
!! GGAGAGTTATCAGCATTGGC+AGG + chr4.4:2673159-2673178 MS.gene049150:CDS 50.0%
!! GTTCAGGTCTTTGGAATGGG+GGG + chr4.4:2673712-2673731 MS.gene049150:intron 50.0%
CAGGGGCAACTCTGAACAGA+GGG + chr4.4:2673085-2673104 MS.gene049150:intron 55.0%
GCGCAACACTCTTGCTCCTT+CGG - chr4.4:2674728-2674747 None:intergenic 55.0%
GGTCAACAGCCTCTAATGCC+AGG - chr4.4:2672589-2672608 None:intergenic 55.0%
TCCCGTCAACCACGTGTACA+AGG - chr4.4:2672261-2672280 None:intergenic 55.0%
! TGGCAATAGGAGGCACAGCA+TGG - chr4.4:2675065-2675084 None:intergenic 55.0%
!! ACCGCGTCTTGCTGTTCAAG+GGG - chr4.4:2675300-2675319 None:intergenic 55.0%
!! CACCGCGTCTTGCTGTTCAA+GGG - chr4.4:2675301-2675320 None:intergenic 55.0%
!! GCAAGAGTGTTGCGCGAACT+TGG + chr4.4:2674733-2674752 MS.gene049150:CDS 55.0%
!! GGAGGACTTGCTGTCGGAAT+GGG + chr4.4:2673138-2673157 MS.gene049150:CDS 55.0%
!! TCAGCTGGAGGACTTGCTGT+CGG + chr4.4:2673132-2673151 MS.gene049150:CDS 55.0%
!! TGGAGGACTTGCTGTCGGAA+TGG + chr4.4:2673137-2673156 MS.gene049150:CDS 55.0%
CCCCCTTGAACAGCAAGACG+CGG + chr4.4:2675296-2675315 MS.gene049150:CDS 60.0%
CCTTGAACAGCAAGACGCGG+TGG + chr4.4:2675299-2675318 MS.gene049150:CDS 60.0%
CTGGGTCATCAGCAGCAGCT+TGG - chr4.4:2673954-2673973 None:intergenic 60.0%
GCAGGGGCAACTCTGAACAG+AGG + chr4.4:2673084-2673103 MS.gene049150:intron 60.0%
GCTGTGTGGGAACCACCTCA+TGG + chr4.4:2674129-2674148 MS.gene049150:CDS 60.0%
!! CCACCGCGTCTTGCTGTTCA+AGG - chr4.4:2675302-2675321 None:intergenic 60.0%
!! CCGCGTCTTGCTGTTCAAGG+GGG - chr4.4:2675299-2675318 None:intergenic 60.0%
AAGACGCGGTGGCCTCTGGC+GGG + chr4.4:2675310-2675329 MS.gene049150:CDS 70.0%
CAAGACGCGGTGGCCTCTGG+CGG + chr4.4:2675309-2675328 MS.gene049150:CDS 70.0%
CAGCAAGACGCGGTGGCCTC+TGG + chr4.4:2675306-2675325 MS.gene049150:CDS 70.0%
!!! CGGTGGCCTCTGGCGGGTTT+TGG + chr4.4:2675316-2675335 MS.gene049150:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 2671485 2675368 2671485 ID=MS.gene049150
chr4.4 mRNA 2671485 2675368 2671485 ID=MS.gene049150.t1;Parent=MS.gene049150
chr4.4 exon 2671485 2671842 2671485 ID=MS.gene049150.t1.exon1;Parent=MS.gene049150.t1
chr4.4 CDS 2671485 2671842 2671485 ID=cds.MS.gene049150.t1;Parent=MS.gene049150.t1
chr4.4 exon 2673088 2673221 2673088 ID=MS.gene049150.t1.exon2;Parent=MS.gene049150.t1
chr4.4 CDS 2673088 2673221 2673088 ID=cds.MS.gene049150.t1;Parent=MS.gene049150.t1
chr4.4 exon 2673267 2673495 2673267 ID=MS.gene049150.t1.exon3;Parent=MS.gene049150.t1
chr4.4 CDS 2673267 2673495 2673267 ID=cds.MS.gene049150.t1;Parent=MS.gene049150.t1
chr4.4 exon 2673887 2674026 2673887 ID=MS.gene049150.t1.exon4;Parent=MS.gene049150.t1
chr4.4 CDS 2673887 2674026 2673887 ID=cds.MS.gene049150.t1;Parent=MS.gene049150.t1
chr4.4 exon 2674120 2674266 2674120 ID=MS.gene049150.t1.exon5;Parent=MS.gene049150.t1
chr4.4 CDS 2674120 2674266 2674120 ID=cds.MS.gene049150.t1;Parent=MS.gene049150.t1
chr4.4 exon 2674673 2675368 2674673 ID=MS.gene049150.t1.exon6;Parent=MS.gene049150.t1
chr4.4 CDS 2674673 2675368 2674673 ID=cds.MS.gene049150.t1;Parent=MS.gene049150.t1
Gene Sequence

>MS.gene049150

ATGGCACCAAAGTTAGCGAAATCAGGATCATTTCGTTATACTTTAGCTGAGAAAAAGGAAAGACTTCTATCCATGAAGGGTGGTGATCATCATGGTTATTCTCGTATAGGAAATGGTTTGCTACAAGAACAAGAGGAGGAATCTAAGATGGTCAAGTTCAAAAAGATGATGAAGCTCGTTGCTGAAAAAGCATGGGAAATGGGTCGTTCTGATCCAAGGAAGATCATTTTTGCTGCTAAAATGGGTCTTGCTTTGGCCCTTATCTCCCTTTTGATTTTTCTTAAAGAACCCTTCGATTTTAGCCGTCACTCTGTTTGGGCTATTCTCACCGTCGTCGTCGTCTTTGAATTCAGTATAGGTACGTCATTCATATTAATTATTTTCTGCCCAATAATACGTTGTTTGCAATTTGCATTGGACATAGAGTATTATTTTGAGTGTTGATGTGTCCGTACTGTCAATTATGTGTTTGTGCAAGTGCTTGATACAAAATTACCACTCTTCACCATTTGACTGGATTTTAACTTATTTTGATCATTGATTAATGAAAATAAGTACGGTATTGTTTGATAGGGTTAGGGGATATATAGATAGATAGTACAAAGAAAAGGAAATGAGTAAATCATCAAATTCGTCCTTGAATTTGCAGGGACTTGTTTGATGTGTCTGAGTGAAATGTGAGGATGGAAGGAATGAGTAAAAGAGGGGTAAAATTGGAAAAATTGAAAGTGAAAAGTTAAAACTGAAATTTGTTGCGTTTCCATCAAATCGGTCCTTGTACACGTGGTTGACGGGATGACATGAGTACAACACAGCACAACATGCAGGACGGCATCTCAGCATCACTACAGAGATATTGGATGGAGGGATGAATTGATGGACGCTTGTTAAATTCAGGGACAAATTTGATATTTCGATAAATTGGGGGAAAAATTTGGCTGGTCCGTGTAAATTCAAGGACGAATTTGATGATTTACTCAAAAGAAAATTAATTATTTGATTAAGTGGGTCGGGTCATATTTGAAATCAATTATGAGAAAGCGTGTTTGGATGATCATCATGTTTTTATACCATTTGCTTTGCTTTTGACACTTTTGACTTCCTGGCATTAGAGGCTGTTGACCTTTCACGTAGGGTTCAAAGGGGTCATGCATAACAATGTCATGTCTCGGAAATCCATGAATGTTGTGTTTACAACAATTGGTTTTGCCATCCAAAAAGGCCTAGTTGCGCAACTTTTTGCCCGCTTGCCCTCTTTTCATGTGTAATTAATCTTTGATATATCTATAAAAAAAATATTTTGGATTAAAAAATTAAATAGCCTAATACTACTTTAGTAGTTTTTTTTTTTTTTTTTTGTTAATTATATATCCATTGCTTCTGCATAAGTAATTTTTTGAAGTGTGTTCATCTTGAAGTATATAGAAAAAGACACAGGTATATGACATGTGGACATTGTTAATAATTTCAAAAAATTATTGAATGTAACTACATATGTCGATGTCTTGACCGTAAGTAACACCTGAAACATCTTTAATACAAAATGTTGGAACTTCTAAGCTTTCAATTTATTTTATGATCAAAATGCAATGGAATTTTGCAGGGGCAACTCTGAACAGAGGGTTTAACAGAGGATTAGGGACATTGTCAGCTGGAGGACTTGCTGTCGGAATGGGAGAGTTATCAGCATTGGCAGGAGAATGGGAAGAAGTTATAGTGATTATCAGTACATTCATTGTTGGATTTTGTATTACATATGCAAAATTGTACCCAACTTTGAAGCCTTATGAATATGGGTTCCGTGTGTTCTTGATTACTTATTGCTACATTACGGTATCTGGTTATCATAGTGGCGAATTTCTTGATACATCTATAAGTAGATTTTTGCTCATTGCACTTGGTGCTGCTGTATCTTTGGGAGTTAATATCTGCATATATCCTATCTGGGCTGGAGAGGATTTACATAATCTTTTGATAAAAAATTTCACGGGTGTTGCAACATCTTTGGAAGGTACTTTATTACATTTCTCATGATCACATTTAATTTGTAGTTGCTACATACTAGTACCATGTAATTGTTCAATGGATGTAGGATAGTTACTATTACATTTAGTGTAGGATAGCTACTGTAATAGGATATATTCTATTACATTTTGCGTATAGTTACTACTAAATTAATTTGTATTCACCATTTTTTATGTATCCGCAAATACCATAAACTACTAAAGTTCAGGTCTTTGGAATGGGGGGAGTACTATATGTTATTGTTCTGCTACTTAGTGAATGTTTGAAATCACAGTGACTCAACGTTATTCTGCTAAATCACGGCCAATCCAAATGTATGGAATTGAGTAACTTTGTTTTTTGACAATTGAATAACCTTGCTGAACTTACATTTTCAGGGGTCGTAAATCACTACCTTAATTGTGTAGAATACAAGAAGGTGCCATCCAAAATTCTGACTTACCAAGCTGCTGCTGATGACCCAGTTTACAGTGGCTACAGATCAGCTGTTGAATCTACAAGTAAAGAAGACTCATTGGTATTGTCTACTTCAGTTTTCTGTCTCTTTCATCAATATTTATTTATTTATTTATCATATTTATGACTCATTGCCATGTGTTTGTGATTGTAGTTGGGATTTGCTGTGTGGGAACCACCTCATGGTAAATACAAAATGCTTAACTATCCATGGAAGAATTATGTCAAAGTAAGCGGGGCTCTAAGACATTGTGCATTCATGGTCATGGCTATGCATGGATGCATACTTTCTGAAATTCAGGTACTTCTAATTATCTAAAATCTTTTCTGTAACATTTTTTTGGTTCTCAGTGCAGAGCATATGAAATTTATAACCTGTATATTTTTAGTGTGTCATGTTTCTATTTTCACTGATAAAATGTACATTAAAGTTTTTGGAAATGTATTTTAGAAAGAGATTCAATATCATCCCAGCCATCATTTGTGATTAAAACTATGAAATTGACATGGAATTATCCTAAAGCATTGGGACTATATTAGAAGTGTTGTCACAAATAGGGGCTAAAAGTACAACATTTGTGATTTTGATTTAAAAGTTTGTTTTTATCATAAAAATTATCTCGACATTAAAACATATGCAGTGCACTGAAGCTTCGTATGTTATCTTATCAATCTTGAAAATACTGAGCTGTCTTCTTGATATATAGGCTCCAGCTGAGAAGAGACATGTTTTCCTCAATGAGCTTAAGAGGGTAGGTTCCGAAGGAGCAAGAGTGTTGCGCGAACTTGGAAACAAAGTAAAAAAGATGGAGAAACTAGACAGAGGAGATTTGCTGTTTGATGTACACGAGGCAGCAGAAGAATTACAACAAAAGATCGATAAAAAATCTTACCTCCTTGTAAACTCAGAGTTCTGGGAGATCGGAAACCGTCCAAGAGATGAAAGTAATGATGATCATCCTAAAGGCCTATTTCACATGGATGAAGATAGAAAATTCCTAGAGTACAAGTCTCTAAGTGAAGCTGTACTTGATCTAAGATCAATTGAAGTTCAAAACAATTGGGATGAAAAAACTACAGATAATAATAGTAATAACCATGCTGTGCCTCCTATTGCCAATGAAAACATGCTTGTGAAACAAATGTCTTGGCCTGCTCATGTTTACTACAAACCAGAAGTCAAAGCAAAAGAGGAAGAATCAAAAACTTATGAAAGTGCTAGTTCGTTGTCTCTAACGACATTTACATCACTTCTGATAGAATTTGTAGCAAGGCTTCAAAATTTAGTGGACTCATTTGAAGAATTGGGTGAGAAAGCTAACTTTAAGGACCCCCTTGAACAGCAAGACGCGGTGGCCTCTGGCGGGTTTTGGACAAAATTGTTTAACTACTTCAAATCCTAG

Protein sequence

>MS.gene049150.t1

MAPKLAKSGSFRYTLAEKKERLLSMKGGDHHGYSRIGNGLLQEQEEESKMVKFKKMMKLVAEKAWEMGRSDPRKIIFAAKMGLALALISLLIFLKEPFDFSRHSVWAILTVVVVFEFSIGATLNRGFNRGLGTLSAGGLAVGMGELSALAGEWEEVIVIISTFIPYEYGFRVFLITYCYITVSGYHSGEFLDTSISRFLLIALGAAVSLGVNICIYPIWAGEDLHNLLIKNFTGVATSLEGVVNHYLNCVEYKKVPSKILTYQAAADDPVYSGYRSAVESTSKEDSLLGFAVWEPPHGKYKMLNYPWKNYVKVSGALRHCAFMVMAMHGCILSEIQAPAEKRHVFLNELKRVGSEGARVLRELGNKVKKMEKLDRGDLLFDVHEAAEELQQKIDKKSYLLVNSEFWEIGNRPRDESNDDHPKGLFHMDEDRKFLEYKSLSEAVLDLRSIEVQNNWDEKTTDNNSNNHAVPPIANENMLVKQMSWPAHVYYKPEVKAKEEESKTYESASSLSLTTFTSLLIEFVARLQNLVDSFEELGEKANFKDPLEQQDAVASGGFWTKLFNYFKS