AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049153


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049153.t1 MTR_8g104120 94.502 582 11 3 1 567 1 576 0.0 1117
MS.gene049153.t1 MTR_8g104110 88.889 585 40 7 1 567 1 578 0.0 1041
MS.gene049153.t1 MTR_8g104130 77.778 585 93 6 1 567 1 566 0.0 877
MS.gene049153.t1 MTR_6g084680 66.332 597 162 7 4 567 7 597 0.0 749
MS.gene049153.t1 MTR_1g111250 53.381 562 214 11 9 548 12 547 0.0 571
MS.gene049153.t1 MTR_1g115140 29.709 515 303 9 52 544 27 504 1.11e-70 236
MS.gene049153.t1 MTR_1g115175 29.537 518 310 11 52 550 23 504 1.43e-68 231
MS.gene049153.t1 MTR_1g115190 30.948 517 298 11 52 544 24 505 2.50e-67 228
MS.gene049153.t1 MTR_1g077660 36.066 366 197 10 53 398 34 382 5.82e-67 225
MS.gene049153.t1 MTR_4g098570 32.290 511 288 11 52 544 35 505 1.49e-66 226
MS.gene049153.t1 MTR_5g014310 31.346 520 288 12 52 544 43 520 3.76e-64 219
MS.gene049153.t1 MTR_1g077670 33.514 370 206 8 48 398 41 389 2.22e-60 207
MS.gene049153.t1 MTR_2g087288 34.049 326 182 7 66 370 37 350 1.27e-57 199
MS.gene049153.t1 MTR_4g098610 30.920 511 295 10 52 544 35 505 5.01e-56 197
MS.gene049153.t1 MTR_2g087285 33.528 343 193 7 48 372 26 351 1.20e-54 191
MS.gene049153.t1 MTR_4g051575 32.184 348 207 6 43 372 19 355 1.79e-54 191
MS.gene049153.t1 MTR_7g106260 33.728 338 194 5 51 370 27 352 1.41e-51 184
MS.gene049153.t1 MTR_7g094770 31.672 341 196 11 71 388 61 387 8.03e-48 173
MS.gene049153.t1 MTR_4g051575 28.986 207 137 2 166 372 25 221 9.95e-27 111
MS.gene049153.t1 MTR_1g077870 67.073 82 12 1 117 183 189 270 1.20e-25 107
MS.gene049153.t1 MTR_6g015325 62.069 87 15 2 120 191 7 90 1.46e-24 98.6
MS.gene049153.t1 MTR_0710s0020 39.623 159 76 4 52 191 24 181 1.86e-18 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049153.t1 AT3G18440 58.462 585 181 9 6 545 3 570 0.0 651
MS.gene049153.t1 AT1G18420 55.282 568 213 11 9 548 27 581 0.0 598
MS.gene049153.t1 AT1G18420 59.127 504 178 8 67 548 1 498 0.0 587
MS.gene049153.t1 AT1G68600 56.863 510 175 11 63 548 45 533 0.0 541
MS.gene049153.t1 AT1G25480 51.337 561 225 10 17 548 4 545 0.0 534
MS.gene049153.t1 AT2G17470 51.858 565 210 12 23 561 19 547 0.0 533
MS.gene049153.t1 AT2G17470 51.964 560 207 12 28 561 2 525 0.0 532
MS.gene049153.t1 AT4G17970 31.120 527 318 12 57 553 30 541 3.57e-74 246
MS.gene049153.t1 AT5G46610 29.831 533 318 11 47 550 22 527 3.19e-72 241
MS.gene049153.t1 AT5G46600 30.112 538 307 12 44 544 20 525 7.85e-69 232
MS.gene049153.t1 AT1G08430 34.188 351 197 7 60 386 7 347 1.02e-63 217
MS.gene049153.t1 AT5G46610 27.725 523 318 13 47 550 22 503 4.52e-60 208
MS.gene049153.t1 AT1G08440 33.043 345 196 7 60 383 7 337 1.10e-59 206
MS.gene049153.t1 AT5G46610 27.853 517 302 11 47 550 22 480 1.22e-59 206
MS.gene049153.t1 AT4G00910 30.387 362 225 7 53 393 42 397 3.23e-58 202
MS.gene049153.t1 AT2G27240 30.564 337 209 5 60 378 7 336 1.11e-53 190
MS.gene049153.t1 AT2G27240 30.532 357 209 8 60 378 7 362 1.14e-52 187
MS.gene049153.t1 AT3G11680 35.494 324 179 6 66 371 36 347 6.51e-52 185
MS.gene049153.t1 AT3G11680 35.604 323 178 6 66 370 38 348 7.43e-52 185

Find 112 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTTGAAGCCTTATGAATA+TGG 0.174410 4.2:+1876872 MS.gene049153:intron
ACTTGGTGCTGCTGTATCTT+TGG 0.219480 4.2:+1876994 MS.gene049153:CDS
TATCTTCATCCATGTGAAAT+AGG 0.224414 4.2:-1878546 None:intergenic
GGGTGAGAAAGCTAACTTTA+AGG 0.239700 4.2:+1878885 MS.gene049153:CDS
TATTGCTACATTACGGTATC+TGG 0.258630 4.2:+1876917 MS.gene049153:CDS
TTATACTTTAGCTGAGAAAA+AGG 0.264645 4.2:+1875134 MS.gene049153:CDS
CGGTGGCCTCTGGCGGGTTT+TGG 0.270967 4.2:+1878929 MS.gene049153:CDS
CACGGGTGTTGCAACATCTT+TGG 0.277271 4.2:+1877084 MS.gene049153:CDS
ATGCATACTTTCTGAAATTC+AGG 0.279585 4.2:+1877859 MS.gene049153:CDS
AGTGGACTCATTTGAAGAAT+TGG 0.284232 4.2:+1878864 MS.gene049153:CDS
AGCTTGGTAAGTCAGAATTT+TGG 0.284312 4.2:-1877549 None:intergenic
AGAGGGTTTAACAGAGGATT+AGG 0.297132 4.2:+1876716 MS.gene049153:CDS
ATATCTGCATATATCCTATC+TGG 0.298144 4.2:+1877023 MS.gene049153:CDS
TCTTGTATTCTACACAATTA+AGG 0.310510 4.2:-1877517 None:intergenic
TGCTAAAATGGGTCTTGCTT+TGG 0.318097 4.2:+1875332 MS.gene049153:CDS
TCCTTGTAAACTCAGAGTTC+TGG 0.320441 4.2:+1878473 MS.gene049153:CDS
GATCTGTAGCCACTGTAAAC+TGG 0.326018 4.2:-1877584 None:intergenic
CAATTGAAGTTCAAAACAAT+TGG 0.343510 4.2:+1878620 MS.gene049153:CDS
CCACCGCGTCTTGCTGTTCA+AGG 0.347600 4.2:-1878912 None:intergenic
CTTGGTGCTGCTGTATCTTT+GGG 0.350864 4.2:+1876995 MS.gene049153:CDS
ATGATGATCACCACCCTTCA+TGG 0.354913 4.2:-1875169 None:intergenic
TCATCATTACTTTCATCTCT+TGG 0.366431 4.2:-1878511 None:intergenic
CTTTGAAGCCTTATGAATAT+GGG 0.373468 4.2:+1876873 MS.gene049153:intron
TCCATGTGAAATAGGCCTTT+AGG 0.373875 4.2:-1878538 None:intergenic
GCGCAACACTCTTGCTCCTT+CGG 0.378158 4.2:-1878338 None:intergenic
GGTTATTCTCGTATAGGAAA+TGG 0.382637 4.2:+1875192 MS.gene049153:CDS
AGCAAGGCTTCAAAATTTAG+TGG 0.384771 4.2:+1878846 MS.gene049153:CDS
CATCATGGTTATTCTCGTAT+AGG 0.388681 4.2:+1875186 MS.gene049153:CDS
GATTACTTATTGCTACATTA+CGG 0.393061 4.2:+1876910 MS.gene049153:CDS
GTGGACTCATTTGAAGAATT+GGG 0.396405 4.2:+1878865 MS.gene049153:CDS
CAGCAAGACGCGGTGGCCTC+TGG 0.399863 4.2:+1878919 MS.gene049153:CDS
GCAAGAGTGTTGCGCGAACT+TGG 0.410191 4.2:+1878346 MS.gene049153:CDS
TCTAAGACATTGTGCATTCA+TGG 0.410766 4.2:+1877820 MS.gene049153:CDS
GCACCAAAGTTAGCGAAATC+AGG 0.416566 4.2:+1875102 MS.gene049153:CDS
GATCCTGATTTCGCTAACTT+TGG 0.426719 4.2:-1875105 None:intergenic
CCTTGTAAACTCAGAGTTCT+GGG 0.428484 4.2:+1878474 MS.gene049153:CDS
GGAGGACTTGCTGTCGGAAT+GGG 0.436199 4.2:+1876752 MS.gene049153:CDS
GTTTAACTACTTCAAATCCT+AGG 0.438117 4.2:+1878960 MS.gene049153:CDS
AATTGAAGTTCAAAACAATT+GGG 0.458526 4.2:+1878621 MS.gene049153:CDS
TACAAGTAAAGAAGACTCAT+TGG 0.458825 4.2:+1877619 MS.gene049153:CDS
ATCAGCATTGGCAGGAGAAT+GGG 0.461506 4.2:+1876781 MS.gene049153:CDS
ACCAGAAGTCAAAGCAAAAG+AGG 0.466634 4.2:+1878750 MS.gene049153:CDS
CAAGACGCGGTGGCCTCTGG+CGG 0.471405 4.2:+1878922 MS.gene049153:CDS
TATCAGCATTGGCAGGAGAA+TGG 0.471652 4.2:+1876780 MS.gene049153:CDS
TGCATATATCCTATCTGGGC+TGG 0.472223 4.2:+1877028 MS.gene049153:CDS
GAGGGTTTAACAGAGGATTA+GGG 0.474453 4.2:+1876717 MS.gene049153:CDS
AAAACATGTCTCTTCTCAGC+TGG 0.479127 4.2:-1878289 None:intergenic
CCCAGAACTCTGAGTTTACA+AGG 0.479823 4.2:-1878474 None:intergenic
ACAAAATGCTTAACTATCCA+TGG 0.482446 4.2:+1877771 MS.gene049153:CDS
AAGAATTATGTCAAAGTAAG+CGG 0.491923 4.2:+1877794 MS.gene049153:CDS
TGGAGGACTTGCTGTCGGAA+TGG 0.492246 4.2:+1876751 MS.gene049153:CDS
CACCGCGTCTTGCTGTTCAA+GGG 0.498901 4.2:-1878911 None:intergenic
GGTTTGTAGTAAACATGAGC+AGG 0.510304 4.2:-1878730 None:intergenic
AACTCAGAGTTCTGGGAGAT+CGG 0.510626 4.2:+1878481 MS.gene049153:CDS
AAATCCTCTCCAGCCCAGAT+AGG 0.512204 4.2:-1877037 None:intergenic
AGAATTATGTCAAAGTAAGC+GGG 0.515041 4.2:+1877795 MS.gene049153:CDS
CATTACTTTCATCTCTTGGA+CGG 0.515706 4.2:-1878507 None:intergenic
ATCTGTAGCCACTGTAAACT+GGG 0.516939 4.2:-1877583 None:intergenic
AAGACGCGGTGGCCTCTGGC+GGG 0.520846 4.2:+1878923 MS.gene049153:CDS
AGTAATGATGATCATCCTAA+AGG 0.524199 4.2:+1878523 MS.gene049153:CDS
ACTTTGACATAATTCTTCCA+TGG 0.530519 4.2:-1877788 None:intergenic
ACCGCGTCTTGCTGTTCAAG+GGG 0.530520 4.2:-1878910 None:intergenic
GGAAAGACTTCTATCCATGA+AGG 0.532105 4.2:+1875155 MS.gene049153:CDS
ACACGGAACCCATATTCATA+AGG 0.533524 4.2:-1876881 None:intergenic
GTAGTTGGGATTTGCTGTGT+GGG 0.535344 4.2:+1877730 MS.gene049153:intron
CTTAAGAGGGTAGGTTCCGA+AGG 0.535826 4.2:+1878322 MS.gene049153:CDS
CAGGGGCAACTCTGAACAGA+GGG 0.539129 4.2:+1876699 MS.gene049153:intron
TGCTTGTGAAACAAATGTCT+TGG 0.539539 4.2:+1878707 MS.gene049153:CDS
CTCAATGAGCTTAAGAGGGT+AGG 0.551849 4.2:+1878313 MS.gene049153:CDS
ACAAGAGGAGGAATCTAAGA+TGG 0.555906 4.2:+1875227 MS.gene049153:CDS
CACTTAGAGACTTGTACTCT+AGG 0.557832 4.2:-1878576 None:intergenic
GTCGTCTTTGAATTCAGTAT+AGG 0.562228 4.2:+1875435 MS.gene049153:CDS
CTGGGTCATCAGCAGCAGCT+TGG 0.563319 4.2:-1877565 None:intergenic
AATGGGAGAGTTATCAGCAT+TGG 0.564616 4.2:+1876769 MS.gene049153:CDS
TGTAGTTGGGATTTGCTGTG+TGG 0.567271 4.2:+1877729 MS.gene049153:intron
TTCTGATAGAATTTGTAGCA+AGG 0.570985 4.2:+1878830 MS.gene049153:CDS
ACATTGTGCATTCATGGTCA+TGG 0.573321 4.2:+1877826 MS.gene049153:CDS
AAATGGGTCGTTCTGATCCA+AGG 0.574359 4.2:+1875295 MS.gene049153:CDS
TATCTGCATATATCCTATCT+GGG 0.575447 4.2:+1877024 MS.gene049153:CDS
GGATTAGGGACATTGTCAGC+TGG 0.577735 4.2:+1876731 MS.gene049153:CDS
GGAGAGTTATCAGCATTGGC+AGG 0.580507 4.2:+1876773 MS.gene049153:CDS
TCCTAAAGGCCTATTTCACA+TGG 0.586405 4.2:+1878537 MS.gene049153:CDS
ATGAAGGGTGGTGATCATCA+TGG 0.589330 4.2:+1875171 MS.gene049153:CDS
ACGGTATCTGGTTATCATAG+TGG 0.592869 4.2:+1876929 MS.gene049153:CDS
AGAGTGACGGCTAAAATCGA+AGG 0.594752 4.2:-1875388 None:intergenic
TTCATGGTCATGGCTATGCA+TGG 0.595719 4.2:+1877836 MS.gene049153:CDS
CTACCCTCTTAAGCTCATTG+AGG 0.600615 4.2:-1878312 None:intergenic
TCAGCTGGAGGACTTGCTGT+CGG 0.601708 4.2:+1876746 MS.gene049153:CDS
GGTGTTGCAACATCTTTGGA+AGG 0.606641 4.2:+1877088 MS.gene049153:CDS
GAAAGACTTCTATCCATGAA+GGG 0.612843 4.2:+1875156 MS.gene049153:CDS
TGGTTTGCTACAAGAACAAG+AGG 0.614623 4.2:+1875212 MS.gene049153:CDS
TTTCCTCAATGAGCTTAAGA+GGG 0.626391 4.2:+1878309 MS.gene049153:CDS
ATATCCTATCTGGGCTGGAG+AGG 0.638574 4.2:+1877033 MS.gene049153:CDS
GAATTCAAAGACGACGACGA+CGG 0.642329 4.2:-1875427 None:intergenic
TGGCAATAGGAGGCACAGCA+TGG 0.643902 4.2:-1878675 None:intergenic
GAGTGACGGCTAAAATCGAA+GGG 0.657783 4.2:-1875387 None:intergenic
GCAGGGGCAACTCTGAACAG+AGG 0.659233 4.2:+1876698 MS.gene049153:intron
TTAGGGACATTGTCAGCTGG+AGG 0.660740 4.2:+1876734 MS.gene049153:CDS
CTGAACAGAGGGTTTAACAG+AGG 0.665152 4.2:+1876710 MS.gene049153:CDS
TAATTGTGTAGAATACAAGA+AGG 0.665618 4.2:+1877520 MS.gene049153:CDS
GAATTATGTCAAAGTAAGCG+GGG 0.667762 4.2:+1877796 MS.gene049153:CDS
GAATAGCCCAAACAGAGTGA+CGG 0.668186 4.2:-1875401 None:intergenic
CCGCGTCTTGCTGTTCAAGG+GGG 0.674384 4.2:-1878909 None:intergenic
CCTTGAACAGCAAGACGCGG+TGG 0.679970 4.2:+1878912 MS.gene049153:CDS
TTTGCTACAAGAACAAGAGG+AGG 0.680569 4.2:+1875215 MS.gene049153:CDS
GCTGTGTGGGAACCACCTCA+TGG 0.682126 4.2:+1877743 MS.gene049153:CDS
AATAAGTAATCAAGAACACA+CGG 0.696265 4.2:-1876898 None:intergenic
GCTGATGACCCAGTTTACAG+TGG 0.697546 4.2:+1877575 MS.gene049153:CDS
AGACTTCTATCCATGAAGGG+TGG 0.700795 4.2:+1875159 MS.gene049153:CDS
AAGATGGAGAAACTAGACAG+AGG 0.705496 4.2:+1878382 MS.gene049153:CDS
TTTGCTGTTTGATGTACACG+AGG 0.709942 4.2:+1878408 MS.gene049153:CDS
AGAACTCTGAGTTTACAAGG+AGG 0.792854 4.2:-1878471 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAATTATTTGATTAAG+TGG + chr4.2:1876084-1876103 MS.gene049153:intron 10.0%
!! AATTAATTATTTGATTAAGT+GGG + chr4.2:1876085-1876104 MS.gene049153:intron 10.0%
!! AATTTGATATTTCGATAAAT+TGG + chr4.2:1876001-1876020 MS.gene049153:intron 15.0%
!! ATTTGATATTTCGATAAATT+GGG + chr4.2:1876002-1876021 MS.gene049153:intron 15.0%
!! TTGATTAATGAAAATAAGTA+CGG + chr4.2:1875636-1875655 MS.gene049153:intron 15.0%
!!! AAAATGTACATTAAAGTTTT+TGG + chr4.2:1877994-1878013 MS.gene049153:intron 15.0%
!!! TCTTTTGATAAAAAATTTCA+CGG + chr4.2:1877066-1877085 MS.gene049153:CDS 15.0%
!!! TTCTTTAAGAAAAATCAAAA+GGG - chr4.2:1875367-1875386 None:intergenic 15.0%
!! AAAACTACTAAAGTAGTATT+AGG - chr4.2:1876423-1876442 None:intergenic 20.0%
!! AATTGAAGTTCAAAACAATT+GGG + chr4.2:1878621-1878640 MS.gene049153:CDS 20.0%
!! ACATCTTTAATACAAAATGT+TGG + chr4.2:1876626-1876645 MS.gene049153:intron 20.0%
!! ATTAATTACACATGAAAAGA+GGG - chr4.2:1876352-1876371 None:intergenic 20.0%
!! TTAAAACTATGAAATTGACA+TGG + chr4.2:1878066-1878085 MS.gene049153:intron 20.0%
!! TTTGATATTTCGATAAATTG+GGG + chr4.2:1876003-1876022 MS.gene049153:intron 20.0%
!!! ATAGTTTTAATCACAAATGA+TGG - chr4.2:1878056-1878075 None:intergenic 20.0%
!!! ATCTTTTCTGTAACATTTTT+TGG + chr4.2:1877900-1877919 MS.gene049153:intron 20.0%
!!! ATTTTATGATCAAAATGCAA+TGG + chr4.2:1876669-1876688 MS.gene049153:intron 20.0%
!!! CTTTTGATAAAAAATTTCAC+GGG + chr4.2:1877067-1877086 MS.gene049153:CDS 20.0%
!!! GTTCTTTAAGAAAAATCAAA+AGG - chr4.2:1875368-1875387 None:intergenic 20.0%
!!! TTTTGTATTAAAGATGTTTC+AGG - chr4.2:1876623-1876642 None:intergenic 20.0%
! AAAAATCAAAAGGGAGATAA+GGG - chr4.2:1875358-1875377 None:intergenic 25.0%
! AAGAATTATGTCAAAGTAAG+CGG + chr4.2:1877794-1877813 MS.gene049153:CDS 25.0%
! AAGTATATAGAAAAAGACAC+AGG + chr4.2:1876514-1876533 MS.gene049153:intron 25.0%
! AATAAGTAATCAAGAACACA+CGG - chr4.2:1876901-1876920 None:intergenic 25.0%
! AATGTTGTGTTTACAACAAT+TGG + chr4.2:1876280-1876299 MS.gene049153:intron 25.0%
! AATTATTTGATTAAGTGGGT+CGG + chr4.2:1876089-1876108 MS.gene049153:intron 25.0%
! AATTGCAAACAACGTATTAT+TGG - chr4.2:1875489-1875508 None:intergenic 25.0%
! AGATAGATAGTACAAAGAAA+AGG + chr4.2:1875687-1875706 MS.gene049153:intron 25.0%
! ATGACACACTAAAAATATAC+AGG - chr4.2:1877956-1877975 None:intergenic 25.0%
! ATTATCAGTACATTCATTGT+TGG + chr4.2:1876818-1876837 MS.gene049153:intron 25.0%
! ATTGCAAACAACGTATTATT+GGG - chr4.2:1875488-1875507 None:intergenic 25.0%
! ATTTGCGGATACATAAAAAA+TGG - chr4.2:1877290-1877309 None:intergenic 25.0%
! CAATTGAAGTTCAAAACAAT+TGG + chr4.2:1878620-1878639 MS.gene049153:CDS 25.0%
! GATTAATTACACATGAAAAG+AGG - chr4.2:1876353-1876372 None:intergenic 25.0%
! GATTACTTATTGCTACATTA+CGG + chr4.2:1876910-1876929 MS.gene049153:CDS 25.0%
! GTTACTATTACATTTAGTGT+AGG + chr4.2:1877195-1877214 MS.gene049153:intron 25.0%
! TAAGTTAAAATCCAGTCAAA+TGG - chr4.2:1875607-1875626 None:intergenic 25.0%
! TAATTGTGTAGAATACAAGA+AGG + chr4.2:1877520-1877539 MS.gene049153:CDS 25.0%
! TCTTGTATTCTACACAATTA+AGG - chr4.2:1877520-1877539 None:intergenic 25.0%
! TGGAAACAAAGTAAAAAAGA+TGG + chr4.2:1878366-1878385 MS.gene049153:CDS 25.0%
! TTAGTAGTTTATGGTATTTG+CGG - chr4.2:1877305-1877324 None:intergenic 25.0%
! TTATACTTTAGCTGAGAAAA+AGG + chr4.2:1875134-1875153 MS.gene049153:CDS 25.0%
! TTGATATTTCGATAAATTGG+GGG + chr4.2:1876004-1876023 MS.gene049153:intron 25.0%
!!! ATCATTTTTGCTGCTAAAAT+GGG + chr4.2:1875321-1875340 MS.gene049153:CDS 25.0%
AACGTTATTCTGCTAAATCA+CGG + chr4.2:1877404-1877423 MS.gene049153:intron 30.0%
AAGTACGGTATTGTTTGATA+GGG + chr4.2:1875651-1875670 MS.gene049153:intron 30.0%
AATTACTTATGCAGAAGCAA+TGG - chr4.2:1876473-1876492 None:intergenic 30.0%
AATTCGTCCTTGAATTTACA+CGG - chr4.2:1876045-1876064 None:intergenic 30.0%
ACAAAATGCTTAACTATCCA+TGG + chr4.2:1877771-1877790 MS.gene049153:CDS 30.0%
ACATCCATTGAACAATTACA+TGG - chr4.2:1877169-1877188 None:intergenic 30.0%
ACCATAAACTACTAAAGTTC+AGG + chr4.2:1877310-1877329 MS.gene049153:intron 30.0%
ACCTGAACTTTAGTAGTTTA+TGG - chr4.2:1877314-1877333 None:intergenic 30.0%
ACTTTGACATAATTCTTCCA+TGG - chr4.2:1877791-1877810 None:intergenic 30.0%
AGAATTATGTCAAAGTAAGC+GGG + chr4.2:1877795-1877814 MS.gene049153:CDS 30.0%
AGTAATGATGATCATCCTAA+AGG + chr4.2:1878523-1878542 MS.gene049153:CDS 30.0%
AGTACCATGTAATTGTTCAA+TGG + chr4.2:1877162-1877181 MS.gene049153:intron 30.0%
ATATCTGCATATATCCTATC+TGG + chr4.2:1877023-1877042 MS.gene049153:CDS 30.0%
ATGGAATTATCCTAAAGCAT+TGG + chr4.2:1878085-1878104 MS.gene049153:intron 30.0%
ATGTGTTTGTGATTGTAGTT+GGG + chr4.2:1877716-1877735 MS.gene049153:intron 30.0%
ATTATTTGATTAAGTGGGTC+GGG + chr4.2:1876090-1876109 MS.gene049153:intron 30.0%
ATTCATAAGGCTTCAAAGTT+GGG - chr4.2:1876871-1876890 None:intergenic 30.0%
CAAACACATAATTGACAGTA+CGG - chr4.2:1875551-1875570 None:intergenic 30.0%
GAAAAATCAAAAGGGAGATA+AGG - chr4.2:1875359-1875378 None:intergenic 30.0%
GATAAATTGGGGGAAAAATT+TGG + chr4.2:1876014-1876033 MS.gene049153:intron 30.0%
GTTACTCAATTCCATACATT+TGG - chr4.2:1877435-1877454 None:intergenic 30.0%
TAAGTACGGTATTGTTTGAT+AGG + chr4.2:1875650-1875669 MS.gene049153:intron 30.0%
TAATATAGTCCCAATGCTTT+AGG - chr4.2:1878098-1878117 None:intergenic 30.0%
TACAAGTAAAGAAGACTCAT+TGG + chr4.2:1877619-1877638 MS.gene049153:CDS 30.0%
TATCTGCATATATCCTATCT+GGG + chr4.2:1877024-1877043 MS.gene049153:CDS 30.0%
TATCTTCATCCATGTGAAAT+AGG - chr4.2:1878549-1878568 None:intergenic 30.0%
TATTCATAAGGCTTCAAAGT+TGG - chr4.2:1876872-1876891 None:intergenic 30.0%
TCAATTCCATACATTTGGAT+TGG - chr4.2:1877430-1877449 None:intergenic 30.0%
TCATCATTACTTTCATCTCT+TGG - chr4.2:1878514-1878533 None:intergenic 30.0%
TGTAATTGTTCAATGGATGT+AGG + chr4.2:1877169-1877188 MS.gene049153:intron 30.0%
TGTTGTAAACACAACATTCA+TGG - chr4.2:1876278-1876297 None:intergenic 30.0%
TTCTGATAGAATTTGTAGCA+AGG + chr4.2:1878830-1878849 MS.gene049153:CDS 30.0%
TTTAATCACAAATGATGGCT+GGG - chr4.2:1878051-1878070 None:intergenic 30.0%
! AAAATGCAATGGAATTTTGC+AGG + chr4.2:1876680-1876699 MS.gene049153:intron 30.0%
! AAATGCAATGGAATTTTGCA+GGG + chr4.2:1876681-1876700 MS.gene049153:intron 30.0%
! AGCATTTTGTATTTACCATG+AGG - chr4.2:1877761-1877780 None:intergenic 30.0%
! ATTTTGTATTTACCATGAGG+TGG - chr4.2:1877758-1877777 None:intergenic 30.0%
! TGGAATTATCCTAAAGCATT+GGG + chr4.2:1878086-1878105 MS.gene049153:intron 30.0%
! TTGCTGAACTTACATTTTCA+GGG + chr4.2:1877480-1877499 MS.gene049153:intron 30.0%
! TTTCACAAGCATGTTTTCAT+TGG - chr4.2:1878698-1878717 None:intergenic 30.0%
! TTTTAATCACAAATGATGGC+TGG - chr4.2:1878052-1878071 None:intergenic 30.0%
!! ACTTTGAAGCCTTATGAATA+TGG + chr4.2:1876872-1876891 MS.gene049153:intron 30.0%
!! ATGCATACTTTCTGAAATTC+AGG + chr4.2:1877859-1877878 MS.gene049153:CDS 30.0%
!! CTTTGAAGCCTTATGAATAT+GGG + chr4.2:1876873-1876892 MS.gene049153:intron 30.0%
!! GATCATTTTTGCTGCTAAAA+TGG + chr4.2:1875320-1875339 MS.gene049153:CDS 30.0%
!! TAGAAGTGTTGTCACAAATA+GGG + chr4.2:1878116-1878135 MS.gene049153:intron 30.0%
!! TTAGAAGTGTTGTCACAAAT+AGG + chr4.2:1878115-1878134 MS.gene049153:intron 30.0%
AAATTCGTCCTTGAATTTGC+AGG + chr4.2:1875726-1875745 MS.gene049153:intron 35.0%
AATTCGTCCTTGAATTTGCA+GGG + chr4.2:1875727-1875746 MS.gene049153:intron 35.0%
ACGTTGTTTGCAATTTGCAT+TGG + chr4.2:1875494-1875513 MS.gene049153:intron 35.0%
ACTACTAAAGTTCAGGTCTT+TGG + chr4.2:1877317-1877336 MS.gene049153:intron 35.0%
AGCAAGGCTTCAAAATTTAG+TGG + chr4.2:1878846-1878865 MS.gene049153:CDS 35.0%
AGTGTCAAAAGCAAAGCAAA+TGG - chr4.2:1876172-1876191 None:intergenic 35.0%
ATCACTACAGAGATATTGGA+TGG + chr4.2:1875940-1875959 MS.gene049153:intron 35.0%
ATGGAAGGAATGAGTAAAAG+AGG + chr4.2:1875782-1875801 MS.gene049153:intron 35.0%
CAACTACAATCACAAACACA+TGG - chr4.2:1877717-1877736 None:intergenic 35.0%
CATCATGGTTATTCTCGTAT+AGG + chr4.2:1875186-1875205 MS.gene049153:CDS 35.0%
CATGTGTTTGTGATTGTAGT+TGG + chr4.2:1877715-1877734 MS.gene049153:intron 35.0%
CATTACTTTCATCTCTTGGA+CGG - chr4.2:1878510-1878529 None:intergenic 35.0%
CTGAAAATGTAAGTTCAGCA+AGG - chr4.2:1877481-1877500 None:intergenic 35.0%
GAAAGACTTCTATCCATGAA+GGG + chr4.2:1875156-1875175 MS.gene049153:CDS 35.0%
GAATTATGTCAAAGTAAGCG+GGG + chr4.2:1877796-1877815 MS.gene049153:CDS 35.0%
GAGCTGTCTTCTTGATATAT+AGG + chr4.2:1878264-1878283 MS.gene049153:intron 35.0%
GAGTAAAAGAGGGGTAAAAT+TGG + chr4.2:1875793-1875812 MS.gene049153:intron 35.0%
GGTATTGTTTGATAGGGTTA+GGG + chr4.2:1875657-1875676 MS.gene049153:intron 35.0%
GGTTATTCTCGTATAGGAAA+TGG + chr4.2:1875192-1875211 MS.gene049153:CDS 35.0%
GTATTGTTTGATAGGGTTAG+GGG + chr4.2:1875658-1875677 MS.gene049153:intron 35.0%
GTCGTCTTTGAATTCAGTAT+AGG + chr4.2:1875435-1875454 MS.gene049153:CDS 35.0%
GTGGACTCATTTGAAGAATT+GGG + chr4.2:1878865-1878884 MS.gene049153:CDS 35.0%
TATTGCTACATTACGGTATC+TGG + chr4.2:1876917-1876936 MS.gene049153:CDS 35.0%
TGCATAACAATGTCATGTCT+CGG + chr4.2:1876248-1876267 MS.gene049153:intron 35.0%
TGCTTGTGAAACAAATGTCT+TGG + chr4.2:1878707-1878726 MS.gene049153:CDS 35.0%
TGGAAGGAATGAGTAAAAGA+GGG + chr4.2:1875783-1875802 MS.gene049153:intron 35.0%
TGTAGGATAGCTACTGTAAT+AGG + chr4.2:1877212-1877231 MS.gene049153:intron 35.0%
TTGTTGCGTTTCCATCAAAT+CGG + chr4.2:1875848-1875867 MS.gene049153:intron 35.0%
TTTCCTCAATGAGCTTAAGA+GGG + chr4.2:1878309-1878328 MS.gene049153:CDS 35.0%
! AATGCAATGGAATTTTGCAG+GGG + chr4.2:1876682-1876701 MS.gene049153:intron 35.0%
! AGATTTTTGCTCATTGCACT+TGG + chr4.2:1876977-1876996 MS.gene049153:CDS 35.0%
! AGCATGTTTTCATTGGCAAT+AGG - chr4.2:1878691-1878710 None:intergenic 35.0%
! AGCTTGGTAAGTCAGAATTT+TGG - chr4.2:1877552-1877571 None:intergenic 35.0%
! AGTGGACTCATTTGAAGAAT+TGG + chr4.2:1878864-1878883 MS.gene049153:CDS 35.0%
! ATGGACGCTTGTTAAATTCA+GGG + chr4.2:1875975-1875994 MS.gene049153:intron 35.0%
! ATGTTTTCATTGGCAATAGG+AGG - chr4.2:1878688-1878707 None:intergenic 35.0%
! CAATTATGAGAAAGCGTGTT+TGG + chr4.2:1876126-1876145 MS.gene049153:intron 35.0%
! CTTGCTGAACTTACATTTTC+AGG + chr4.2:1877479-1877498 MS.gene049153:intron 35.0%
! TAAAGTTCAGGTCTTTGGAA+TGG + chr4.2:1877322-1877341 MS.gene049153:intron 35.0%
! TCTAAGACATTGTGCATTCA+TGG + chr4.2:1877820-1877839 MS.gene049153:CDS 35.0%
! TGCTGAACTTACATTTTCAG+GGG + chr4.2:1877481-1877500 MS.gene049153:intron 35.0%
! TGGTAAGTCAGAATTTTGGA+TGG - chr4.2:1877548-1877567 None:intergenic 35.0%
! TTTTCCTCAATGAGCTTAAG+AGG + chr4.2:1878308-1878327 MS.gene049153:CDS 35.0%
!! AAAGTTCAGGTCTTTGGAAT+GGG + chr4.2:1877323-1877342 MS.gene049153:intron 35.0%
!! AGAAGTGTTGTCACAAATAG+GGG + chr4.2:1878117-1878136 MS.gene049153:intron 35.0%
!! GATGTTTCAGGTGTTACTTA+CGG - chr4.2:1876611-1876630 None:intergenic 35.0%
!!! ATTGGTTTTGCCATCCAAAA+AGG + chr4.2:1876298-1876317 MS.gene049153:intron 35.0%
!!! TTTTGACACTTTTGACTTCC+TGG + chr4.2:1876182-1876201 MS.gene049153:intron 35.0%
AAAACATGTCTCTTCTCAGC+TGG - chr4.2:1878292-1878311 None:intergenic 40.0%
AACAAGTCCCTGCAAATTCA+AGG - chr4.2:1875737-1875756 None:intergenic 40.0%
AAGATGGAGAAACTAGACAG+AGG + chr4.2:1878382-1878401 MS.gene049153:CDS 40.0%
AATGGGAGAGTTATCAGCAT+TGG + chr4.2:1876769-1876788 MS.gene049153:CDS 40.0%
AATTGGGGGAAAAATTTGGC+TGG + chr4.2:1876018-1876037 MS.gene049153:intron 40.0%
ACAAGAGGAGGAATCTAAGA+TGG + chr4.2:1875227-1875246 MS.gene049153:CDS 40.0%
ACACGGAACCCATATTCATA+AGG - chr4.2:1876884-1876903 None:intergenic 40.0%
ACATTGTGCATTCATGGTCA+TGG + chr4.2:1877826-1877845 MS.gene049153:CDS 40.0%
ACCAGAAGTCAAAGCAAAAG+AGG + chr4.2:1878750-1878769 MS.gene049153:CDS 40.0%
ACGGTATCTGGTTATCATAG+TGG + chr4.2:1876929-1876948 MS.gene049153:CDS 40.0%
ACTACAGAGATATTGGATGG+AGG + chr4.2:1875943-1875962 MS.gene049153:intron 40.0%
AGAACTCTGAGTTTACAAGG+AGG - chr4.2:1878474-1878493 None:intergenic 40.0%
AGACACAGGTATATGACATG+TGG + chr4.2:1876528-1876547 MS.gene049153:intron 40.0%
AGAGGGTTTAACAGAGGATT+AGG + chr4.2:1876716-1876735 MS.gene049153:CDS 40.0%
ATCTGTAGCCACTGTAAACT+GGG - chr4.2:1877586-1877605 None:intergenic 40.0%
ATGTGTCTGAGTGAAATGTG+AGG + chr4.2:1875759-1875778 MS.gene049153:intron 40.0%
CACTTAGAGACTTGTACTCT+AGG - chr4.2:1878579-1878598 None:intergenic 40.0%
CAGCATCACTACAGAGATAT+TGG + chr4.2:1875936-1875955 MS.gene049153:intron 40.0%
CCTTGTAAACTCAGAGTTCT+GGG + chr4.2:1878474-1878493 MS.gene049153:CDS 40.0%
CGGTATTGTTTGATAGGGTT+AGG + chr4.2:1875656-1875675 MS.gene049153:intron 40.0%
CTACAGAGATATTGGATGGA+GGG + chr4.2:1875944-1875963 MS.gene049153:intron 40.0%
GAGGGTTTAACAGAGGATTA+GGG + chr4.2:1876717-1876736 MS.gene049153:CDS 40.0%
GATCCTGATTTCGCTAACTT+TGG - chr4.2:1875108-1875127 None:intergenic 40.0%
GCAGCAAAAATGATCTTCCT+TGG - chr4.2:1875315-1875334 None:intergenic 40.0%
GGAAAGACTTCTATCCATGA+AGG + chr4.2:1875155-1875174 MS.gene049153:CDS 40.0%
GGAAGGAATGAGTAAAAGAG+GGG + chr4.2:1875784-1875803 MS.gene049153:intron 40.0%
GGGTGAGAAAGCTAACTTTA+AGG + chr4.2:1878885-1878904 MS.gene049153:CDS 40.0%
GGTTTGTAGTAAACATGAGC+AGG - chr4.2:1878733-1878752 None:intergenic 40.0%
TCCATGTGAAATAGGCCTTT+AGG - chr4.2:1878541-1878560 None:intergenic 40.0%
TCCTAAAGGCCTATTTCACA+TGG + chr4.2:1878537-1878556 MS.gene049153:CDS 40.0%
TCCTTGTAAACTCAGAGTTC+TGG + chr4.2:1878473-1878492 MS.gene049153:CDS 40.0%
TGCTAAAATGGGTCTTGCTT+TGG + chr4.2:1875332-1875351 MS.gene049153:CDS 40.0%
TTTGCTACAAGAACAAGAGG+AGG + chr4.2:1875215-1875234 MS.gene049153:CDS 40.0%
! GATGGACGCTTGTTAAATTC+AGG + chr4.2:1875974-1875993 MS.gene049153:intron 40.0%
! GCTGAAAAAGCATGGGAAAT+GGG + chr4.2:1875279-1875298 MS.gene049153:CDS 40.0%
! TGCTGAAAAAGCATGGGAAA+TGG + chr4.2:1875278-1875297 MS.gene049153:CDS 40.0%
! TTTTAGCCGTCACTCTGTTT+GGG + chr4.2:1875395-1875414 MS.gene049153:CDS 40.0%
!! AAGTTCAGGTCTTTGGAATG+GGG + chr4.2:1877324-1877343 MS.gene049153:intron 40.0%
!! ATTTTAGCCGTCACTCTGTT+TGG + chr4.2:1875394-1875413 MS.gene049153:CDS 40.0%
!! TCCTCTTTTGCTTTGACTTC+TGG - chr4.2:1878754-1878773 None:intergenic 40.0%
!! TGGTTTGCTACAAGAACAAG+AGG + chr4.2:1875212-1875231 MS.gene049153:CDS 40.0%
!! TTTGCTGTTTGATGTACACG+AGG + chr4.2:1878408-1878427 MS.gene049153:CDS 40.0%
!!! TTTTGACTTCCTGGCATTAG+AGG + chr4.2:1876191-1876210 MS.gene049153:intron 40.0%
AAATGGGTCGTTCTGATCCA+AGG + chr4.2:1875295-1875314 MS.gene049153:CDS 45.0%
ACACATGAAAAGAGGGCAAG+CGG - chr4.2:1876345-1876364 None:intergenic 45.0%
ACCACTCTTCACCATTTGAC+TGG + chr4.2:1875593-1875612 MS.gene049153:intron 45.0%
ACCTTTCACGTAGGGTTCAA+AGG + chr4.2:1876220-1876239 MS.gene049153:intron 45.0%
AGACTTCTATCCATGAAGGG+TGG + chr4.2:1875159-1875178 MS.gene049153:CDS 45.0%
AGAGTGACGGCTAAAATCGA+AGG - chr4.2:1875391-1875410 None:intergenic 45.0%
AGCTCGTTGCTGAAAAAGCA+TGG + chr4.2:1875271-1875290 MS.gene049153:CDS 45.0%
ATGAAGGGTGGTGATCATCA+TGG + chr4.2:1875171-1875190 MS.gene049153:CDS 45.0%
ATGATGATCACCACCCTTCA+TGG - chr4.2:1875172-1875191 None:intergenic 45.0%
CCCAGAACTCTGAGTTTACA+AGG - chr4.2:1878477-1878496 None:intergenic 45.0%
CCTTTCACGTAGGGTTCAAA+GGG + chr4.2:1876221-1876240 MS.gene049153:intron 45.0%
CTACCCTCTTAAGCTCATTG+AGG - chr4.2:1878315-1878334 None:intergenic 45.0%
CTCAATGAGCTTAAGAGGGT+AGG + chr4.2:1878313-1878332 MS.gene049153:CDS 45.0%
CTGAACAGAGGGTTTAACAG+AGG + chr4.2:1876710-1876729 MS.gene049153:CDS 45.0%
CTTTCACGTAGGGTTCAAAG+GGG + chr4.2:1876222-1876241 MS.gene049153:intron 45.0%
GAATAGCCCAAACAGAGTGA+CGG - chr4.2:1875404-1875423 None:intergenic 45.0%
GAATTCAAAGACGACGACGA+CGG - chr4.2:1875430-1875449 None:intergenic 45.0%
GAGTGAAATGTGAGGATGGA+AGG + chr4.2:1875767-1875786 MS.gene049153:intron 45.0%
GAGTGACGGCTAAAATCGAA+GGG - chr4.2:1875390-1875409 None:intergenic 45.0%
GATCTGTAGCCACTGTAAAC+TGG - chr4.2:1877587-1877606 None:intergenic 45.0%
GCACCAAAGTTAGCGAAATC+AGG + chr4.2:1875102-1875121 MS.gene049153:CDS 45.0%
GTCTGAGTGAAATGTGAGGA+TGG + chr4.2:1875763-1875782 MS.gene049153:intron 45.0%
TACAACACAGCACAACATGC+AGG + chr4.2:1875904-1875923 MS.gene049153:intron 45.0%
TCACGGCCAATCCAAATGTA+TGG + chr4.2:1877421-1877440 MS.gene049153:intron 45.0%
TCCAGTCAAATGGTGAAGAG+TGG - chr4.2:1875597-1875616 None:intergenic 45.0%
TGCATATATCCTATCTGGGC+TGG + chr4.2:1877028-1877047 MS.gene049153:CDS 45.0%
TGGATGGAGGGATGAATTGA+TGG + chr4.2:1875956-1875975 MS.gene049153:intron 45.0%
TTCATGGTCATGGCTATGCA+TGG + chr4.2:1877836-1877855 MS.gene049153:CDS 45.0%
! GCTCGTTGCTGAAAAAGCAT+GGG + chr4.2:1875272-1875291 MS.gene049153:CDS 45.0%
! GGTGTTGCAACATCTTTGGA+AGG + chr4.2:1877088-1877107 MS.gene049153:CDS 45.0%
!! AACTCAGAGTTCTGGGAGAT+CGG + chr4.2:1878481-1878500 MS.gene049153:CDS 45.0%
!! ACTTGGTGCTGCTGTATCTT+TGG + chr4.2:1876994-1877013 MS.gene049153:CDS 45.0%
!! AGTTCAGGTCTTTGGAATGG+GGG + chr4.2:1877325-1877344 MS.gene049153:intron 45.0%
!! ATCAGCATTGGCAGGAGAAT+GGG + chr4.2:1876781-1876800 MS.gene049153:CDS 45.0%
!! CTTGGTGCTGCTGTATCTTT+GGG + chr4.2:1876995-1877014 MS.gene049153:CDS 45.0%
!! GTAGTTGGGATTTGCTGTGT+GGG + chr4.2:1877730-1877749 MS.gene049153:intron 45.0%
!! GTGTACAAGGACCGATTTGA+TGG - chr4.2:1875862-1875881 None:intergenic 45.0%
!! TATCAGCATTGGCAGGAGAA+TGG + chr4.2:1876780-1876799 MS.gene049153:CDS 45.0%
!! TGTAGTTGGGATTTGCTGTG+TGG + chr4.2:1877729-1877748 MS.gene049153:intron 45.0%
!!! TATCTATAAAAAAAATATTT+TGG + chr4.2:1876380-1876399 MS.gene049153:intron 5.0%
AAATCCTCTCCAGCCCAGAT+AGG - chr4.2:1877040-1877059 None:intergenic 50.0%
ACACAGCACAACATGCAGGA+CGG + chr4.2:1875908-1875927 MS.gene049153:intron 50.0%
AGGCTGTTGACCTTTCACGT+AGG + chr4.2:1876211-1876230 MS.gene049153:intron 50.0%
CAAATCGGTCCTTGTACACG+TGG + chr4.2:1875863-1875882 MS.gene049153:intron 50.0%
CACATGAAAAGAGGGCAAGC+GGG - chr4.2:1876344-1876363 None:intergenic 50.0%
CCCTTTGAACCCTACGTGAA+AGG - chr4.2:1876224-1876243 None:intergenic 50.0%
CTTAAGAGGGTAGGTTCCGA+AGG + chr4.2:1878322-1878341 MS.gene049153:CDS 50.0%
GCTGATGACCCAGTTTACAG+TGG + chr4.2:1877575-1877594 MS.gene049153:CDS 50.0%
GGATTAGGGACATTGTCAGC+TGG + chr4.2:1876731-1876750 MS.gene049153:CDS 50.0%
GGCTGTTGACCTTTCACGTA+GGG + chr4.2:1876212-1876231 MS.gene049153:intron 50.0%
GGGCAAAAAGTTGCGCAACT+AGG - chr4.2:1876324-1876343 None:intergenic 50.0%
GTCCTTGTACACGTGGTTGA+CGG + chr4.2:1875870-1875889 MS.gene049153:intron 50.0%
TCCTTGTACACGTGGTTGAC+GGG + chr4.2:1875871-1875890 MS.gene049153:intron 50.0%
TTAGGGACATTGTCAGCTGG+AGG + chr4.2:1876734-1876753 MS.gene049153:CDS 50.0%
! ATATCCTATCTGGGCTGGAG+AGG + chr4.2:1877033-1877052 MS.gene049153:CDS 50.0%
! CACGGGTGTTGCAACATCTT+TGG + chr4.2:1877084-1877103 MS.gene049153:CDS 50.0%
! CGCAACTAGGCCTTTTTGGA+TGG - chr4.2:1876311-1876330 None:intergenic 50.0%
! GGCTGGTCCGTGTAAATTCA+AGG + chr4.2:1876035-1876054 MS.gene049153:intron 50.0%
! GTTGCGCAACTAGGCCTTTT+TGG - chr4.2:1876315-1876334 None:intergenic 50.0%
! TTTTGTCCAAAACCCGCCAG+AGG - chr4.2:1878938-1878957 None:intergenic 50.0%
!! GGAGAGTTATCAGCATTGGC+AGG + chr4.2:1876773-1876792 MS.gene049153:CDS 50.0%
!! GTTCAGGTCTTTGGAATGGG+GGG + chr4.2:1877326-1877345 MS.gene049153:intron 50.0%
CAGGGGCAACTCTGAACAGA+GGG + chr4.2:1876699-1876718 MS.gene049153:intron 55.0%
GCGCAACACTCTTGCTCCTT+CGG - chr4.2:1878341-1878360 None:intergenic 55.0%
GGTCAACAGCCTCTAATGCC+AGG - chr4.2:1876203-1876222 None:intergenic 55.0%
TCCCGTCAACCACGTGTACA+AGG - chr4.2:1875875-1875894 None:intergenic 55.0%
! TGGCAATAGGAGGCACAGCA+TGG - chr4.2:1878678-1878697 None:intergenic 55.0%
!! ACCGCGTCTTGCTGTTCAAG+GGG - chr4.2:1878913-1878932 None:intergenic 55.0%
!! CACCGCGTCTTGCTGTTCAA+GGG - chr4.2:1878914-1878933 None:intergenic 55.0%
!! GCAAGAGTGTTGCGCGAACT+TGG + chr4.2:1878346-1878365 MS.gene049153:CDS 55.0%
!! GGAGGACTTGCTGTCGGAAT+GGG + chr4.2:1876752-1876771 MS.gene049153:CDS 55.0%
!! TCAGCTGGAGGACTTGCTGT+CGG + chr4.2:1876746-1876765 MS.gene049153:CDS 55.0%
!! TGGAGGACTTGCTGTCGGAA+TGG + chr4.2:1876751-1876770 MS.gene049153:CDS 55.0%
CCCCCTTGAACAGCAAGACG+CGG + chr4.2:1878909-1878928 MS.gene049153:CDS 60.0%
CCTTGAACAGCAAGACGCGG+TGG + chr4.2:1878912-1878931 MS.gene049153:CDS 60.0%
CTGGGTCATCAGCAGCAGCT+TGG - chr4.2:1877568-1877587 None:intergenic 60.0%
GCAGGGGCAACTCTGAACAG+AGG + chr4.2:1876698-1876717 MS.gene049153:intron 60.0%
GCTGTGTGGGAACCACCTCA+TGG + chr4.2:1877743-1877762 MS.gene049153:CDS 60.0%
!! CCACCGCGTCTTGCTGTTCA+AGG - chr4.2:1878915-1878934 None:intergenic 60.0%
!! CCGCGTCTTGCTGTTCAAGG+GGG - chr4.2:1878912-1878931 None:intergenic 60.0%
AAGACGCGGTGGCCTCTGGC+GGG + chr4.2:1878923-1878942 MS.gene049153:CDS 70.0%
CAAGACGCGGTGGCCTCTGG+CGG + chr4.2:1878922-1878941 MS.gene049153:CDS 70.0%
CAGCAAGACGCGGTGGCCTC+TGG + chr4.2:1878919-1878938 MS.gene049153:CDS 70.0%
!!! CGGTGGCCTCTGGCGGGTTT+TGG + chr4.2:1878929-1878948 MS.gene049153:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 1875099 1878981 1875099 ID=MS.gene049153
chr4.2 mRNA 1875099 1878981 1875099 ID=MS.gene049153.t1;Parent=MS.gene049153
chr4.2 exon 1875099 1875456 1875099 ID=MS.gene049153.t1.exon1;Parent=MS.gene049153.t1
chr4.2 CDS 1875099 1875456 1875099 ID=cds.MS.gene049153.t1;Parent=MS.gene049153.t1
chr4.2 exon 1876702 1876835 1876702 ID=MS.gene049153.t1.exon2;Parent=MS.gene049153.t1
chr4.2 CDS 1876702 1876835 1876702 ID=cds.MS.gene049153.t1;Parent=MS.gene049153.t1
chr4.2 exon 1876881 1877109 1876881 ID=MS.gene049153.t1.exon3;Parent=MS.gene049153.t1
chr4.2 CDS 1876881 1877109 1876881 ID=cds.MS.gene049153.t1;Parent=MS.gene049153.t1
chr4.2 exon 1877501 1877640 1877501 ID=MS.gene049153.t1.exon4;Parent=MS.gene049153.t1
chr4.2 CDS 1877501 1877640 1877501 ID=cds.MS.gene049153.t1;Parent=MS.gene049153.t1
chr4.2 exon 1877734 1877880 1877734 ID=MS.gene049153.t1.exon5;Parent=MS.gene049153.t1
chr4.2 CDS 1877734 1877880 1877734 ID=cds.MS.gene049153.t1;Parent=MS.gene049153.t1
chr4.2 exon 1878286 1878981 1878286 ID=MS.gene049153.t1.exon6;Parent=MS.gene049153.t1
chr4.2 CDS 1878286 1878981 1878286 ID=cds.MS.gene049153.t1;Parent=MS.gene049153.t1
Gene Sequence

>MS.gene049153

ATGGCACCAAAGTTAGCGAAATCAGGATCATTTCGTTATACTTTAGCTGAGAAAAAGGAAAGACTTCTATCCATGAAGGGTGGTGATCATCATGGTTATTCTCGTATAGGAAATGGTTTGCTACAAGAACAAGAGGAGGAATCTAAGATGGTCAAGTTCAAAAAGATGATGAAGCTCGTTGCTGAAAAAGCATGGGAAATGGGTCGTTCTGATCCAAGGAAGATCATTTTTGCTGCTAAAATGGGTCTTGCTTTGGCCCTTATCTCCCTTTTGATTTTTCTTAAAGAACCCTTCGATTTTAGCCGTCACTCTGTTTGGGCTATTCTCACCGTCGTCGTCGTCTTTGAATTCAGTATAGGTACGTCATTCATATTAATTATTTTCTGCCCAATAATACGTTGTTTGCAATTTGCATTGGACATAGAGTATTATTTTGAGTGTTGATGTGTCCGTACTGTCAATTATGTGTTTGTGCAAGTGCTTGATACAAAATTACCACTCTTCACCATTTGACTGGATTTTAACTTATTTTGATCATTGATTAATGAAAATAAGTACGGTATTGTTTGATAGGGTTAGGGGATATATAGATAGATAGTACAAAGAAAAGGAAATGAGTAAATCATCAAATTCGTCCTTGAATTTGCAGGGACTTGTTTGATGTGTCTGAGTGAAATGTGAGGATGGAAGGAATGAGTAAAAGAGGGGTAAAATTGGAAAAATTGAAAGTGAAAAGTTAAAACTGAAATTTGTTGCGTTTCCATCAAATCGGTCCTTGTACACGTGGTTGACGGGATGACATGAGTACAACACAGCACAACATGCAGGACGGCATCTCAGCATCACTACAGAGATATTGGATGGAGGGATGAATTGATGGACGCTTGTTAAATTCAGGGACAAATTTGATATTTCGATAAATTGGGGGAAAAATTTGGCTGGTCCGTGTAAATTCAAGGACGAATTTGATGATTTACTCAAAAGAAAATTAATTATTTGATTAAGTGGGTCGGGTCATATTTGAAATCAATTATGAGAAAGCGTGTTTGGATGATCATCATGTTTTTATACCATTTGCTTTGCTTTTGACACTTTTGACTTCCTGGCATTAGAGGCTGTTGACCTTTCACGTAGGGTTCAAAGGGGTCATGCATAACAATGTCATGTCTCGGAAATCCATGAATGTTGTGTTTACAACAATTGGTTTTGCCATCCAAAAAGGCCTAGTTGCGCAACTTTTTGCCCGCTTGCCCTCTTTTCATGTGTAATTAATCTTTGATATATCTATAAAAAAAATATTTTGGATTAAAAAATTAAATAGCCTAATACTACTTTAGTAGTTTTTTTTTTTTTTTTTTGTTAATTATATATCCATTGCTTCTGCATAAGTAATTTTTTGAAGTGTGTTCATCTTGAAGTATATAGAAAAAGACACAGGTATATGACATGTGGACATTGTTAATAATTTCAAAAAATTATTGAATGTAACTACATATGTCGATGTCTTGACCGTAAGTAACACCTGAAACATCTTTAATACAAAATGTTGGAACTTCTAAGCTTTCAATTTATTTTATGATCAAAATGCAATGGAATTTTGCAGGGGCAACTCTGAACAGAGGGTTTAACAGAGGATTAGGGACATTGTCAGCTGGAGGACTTGCTGTCGGAATGGGAGAGTTATCAGCATTGGCAGGAGAATGGGAAGAAGTTATAGTGATTATCAGTACATTCATTGTTGGATTTTGTATTACATATGCAAAATTGTACCCAACTTTGAAGCCTTATGAATATGGGTTCCGTGTGTTCTTGATTACTTATTGCTACATTACGGTATCTGGTTATCATAGTGGCGAATTTCTTGATACATCTATAAGTAGATTTTTGCTCATTGCACTTGGTGCTGCTGTATCTTTGGGAGTTAATATCTGCATATATCCTATCTGGGCTGGAGAGGATTTACATAATCTTTTGATAAAAAATTTCACGGGTGTTGCAACATCTTTGGAAGGTACTTTATTACATTTCTCATGATCACATTTAATTTGTAGTTGCTACATACTAGTACCATGTAATTGTTCAATGGATGTAGGATAGTTACTATTACATTTAGTGTAGGATAGCTACTGTAATAGGATATATTCTATTACATTTTGCGTATAGTTACTACTAAATTAATTTGTATTCACCATTTTTTATGTATCCGCAAATACCATAAACTACTAAAGTTCAGGTCTTTGGAATGGGGGGAGTACTATATGTTATTGTTCTGCTACTTAGTGAATGTTTGAAATCACAGTGACTCAACGTTATTCTGCTAAATCACGGCCAATCCAAATGTATGGAATTGAGTAACTTTGTTTTTTGACAATTGAATAACCTTGCTGAACTTACATTTTCAGGGGTCGTAAATCACTACCTTAATTGTGTAGAATACAAGAAGGTGCCATCCAAAATTCTGACTTACCAAGCTGCTGCTGATGACCCAGTTTACAGTGGCTACAGATCAGCTGTTGAATCTACAAGTAAAGAAGACTCATTGGTATTGTCTACTTCAGTTTTCTGTCTCTTTCATCAATATTTATTTATTTATTTATCATATTTATGACTCATTGCCATGTGTTTGTGATTGTAGTTGGGATTTGCTGTGTGGGAACCACCTCATGGTAAATACAAAATGCTTAACTATCCATGGAAGAATTATGTCAAAGTAAGCGGGGCTCTAAGACATTGTGCATTCATGGTCATGGCTATGCATGGATGCATACTTTCTGAAATTCAGGTACTTCTAATTATCTAAAATCTTTTCTGTAACATTTTTTGGTTCTCAGTGCAGAGCATATGAAATTTATAACCTGTATATTTTTAGTGTGTCATGTTTCTATTTTCACTGATAAAATGTACATTAAAGTTTTTGGAAATGTATTTTAGAAAGAGATTCAATATCATCCCAGCCATCATTTGTGATTAAAACTATGAAATTGACATGGAATTATCCTAAAGCATTGGGACTATATTAGAAGTGTTGTCACAAATAGGGGCTAAAAGTACAACATTTGTGATTTTGATTTAAAAGTTTGTTTTTATCATAAAAATTATCTCGACATTAAAACATATGCAGTGCACTGAAGCTTCGTATGTTATCTTATCAATCTTGAAAATACTGAGCTGTCTTCTTGATATATAGGCTCCAGCTGAGAAGAGACATGTTTTCCTCAATGAGCTTAAGAGGGTAGGTTCCGAAGGAGCAAGAGTGTTGCGCGAACTTGGAAACAAAGTAAAAAAGATGGAGAAACTAGACAGAGGAGATTTGCTGTTTGATGTACACGAGGCAGCAGAAGAATTACAACAAAAGATCGATAAAAAATCTTACCTCCTTGTAAACTCAGAGTTCTGGGAGATCGGAAACCGTCCAAGAGATGAAAGTAATGATGATCATCCTAAAGGCCTATTTCACATGGATGAAGATAGAAAATTCCTAGAGTACAAGTCTCTAAGTGAAGCTGTACTTGATCTAAGATCAATTGAAGTTCAAAACAATTGGGATGAAAAAACTACAGATAATAATAGTAATAACCATGCTGTGCCTCCTATTGCCAATGAAAACATGCTTGTGAAACAAATGTCTTGGCCTGCTCATGTTTACTACAAACCAGAAGTCAAAGCAAAAGAGGAAGAATCAAAAACTTATGAAAGTGCTAGTTCGTTGTCTCTAACGACATTTACATCACTTCTGATAGAATTTGTAGCAAGGCTTCAAAATTTAGTGGACTCATTTGAAGAATTGGGTGAGAAAGCTAACTTTAAGGACCCCCTTGAACAGCAAGACGCGGTGGCCTCTGGCGGGTTTTGGACAAAATTGTTTAACTACTTCAAATCCTAG

Protein sequence

>MS.gene049153.t1

MAPKLAKSGSFRYTLAEKKERLLSMKGGDHHGYSRIGNGLLQEQEEESKMVKFKKMMKLVAEKAWEMGRSDPRKIIFAAKMGLALALISLLIFLKEPFDFSRHSVWAILTVVVVFEFSIGATLNRGFNRGLGTLSAGGLAVGMGELSALAGEWEEVIVIISTFIPYEYGFRVFLITYCYITVSGYHSGEFLDTSISRFLLIALGAAVSLGVNICIYPIWAGEDLHNLLIKNFTGVATSLEGVVNHYLNCVEYKKVPSKILTYQAAADDPVYSGYRSAVESTSKEDSLLGFAVWEPPHGKYKMLNYPWKNYVKVSGALRHCAFMVMAMHGCILSEIQAPAEKRHVFLNELKRVGSEGARVLRELGNKVKKMEKLDRGDLLFDVHEAAEELQQKIDKKSYLLVNSEFWEIGNRPRDESNDDHPKGLFHMDEDRKFLEYKSLSEAVLDLRSIEVQNNWDEKTTDNNSNNHAVPPIANENMLVKQMSWPAHVYYKPEVKAKEEESKTYESASSLSLTTFTSLLIEFVARLQNLVDSFEELGEKANFKDPLEQQDAVASGGFWTKLFNYFKS