AlfalfaGEDB | MS.gene40345

M. sativa cultivar XinJiangDaYe / MS.gene40345

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008144 GO:0019825 GO:0020037 GO:0036094 GO:0046906 GO:0048037 GO:0097159 GO:1901363
PFAM: PF01152.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40345.t1	XP_003603592.1	93.5	170	5	1	1	164	1	170	2.20E-86	328.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40345.t1	Q67XG0	69.6	171	39	2	1	158	1	171	2.3e-60	233.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40345.t1	G7J2X4	93.5	170	5	1	1	164	1	170	1.6e-86	328.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene40345	0.802417	5.67E-49	-1.69E-46
MS.gene053900	MS.gene40345	0.808357	3.22E-50	-1.69E-46
MS.gene055818	MS.gene40345	0.805378	1.37E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40345.t1	MTR_3g109420	93.529	170	5	1	1	164	1	170	5.72e-118	330
MS.gene40345.t1	MTR_1g008700	75.301	166	33	3	1	158	1	166	1.91e-85	248

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40345.t1	AT4G32690	69.591	171	39	2	1	158	1	171	6.17e-81	237

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Find 37 sgRNAs with CRISPR-Local

Find 55 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGTTGGTGTCATCAA+TGG	0.436122	3.3:-89779313	None:intergenic
AAAGGTTAATGAAAGTTTGA+AGG	0.487596	3.3:-89779347	None:intergenic
AAAGTTAATCAACATTATCT+TGG	0.353946	3.3:-89780148	None:intergenic
ACCAACTTGTTTCAAAAGCT+AGG	0.598000	3.3:+89779324	MS.gene40345:CDS
ACTTCATATGCAACAAGCAT+TGG	0.490000	3.3:+89780098	MS.gene40345:CDS
ATAGAACCTGTTGTAGAAAT+TGG	0.299176	3.3:-89779373	None:intergenic
CACATGAAGCTGCCGAGAGG+TGG	0.582503	3.3:+89780073	MS.gene40345:CDS
CACCCTTGCAAGGATGCAGC+TGG	0.514180	3.3:+89780312	MS.gene40345:CDS
CATATGAAGTAACCACCTCT+CGG	0.635321	3.3:-89780085	None:intergenic
CCTCTGTATTCTCAGAGAAG+AGG	0.592545	3.3:+89779585	MS.gene40345:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAGAACCTGTTGTAGAAAT+TGG	-	chr3.3:89779376-89779395	None:intergenic	30.0%
GTCATGAACTTAGTAAAGAA+AGG	-	chr3.3:89779433-89779452	None:intergenic	30.0%
TGCCTAAAAAGTAAAAACAC+AGG	-	chr3.3:89780243-89780262	None:intergenic	30.0%
ACTTCATATGCAACAAGCAT+TGG	+	chr3.3:89780098-89780117	MS.gene40345:CDS	35.0%
ATGTCCTGTAATGTGAAGTA+CGG	-	chr3.3:89780016-89780035	None:intergenic	35.0%
TCAAAACCAGTACGAATTCT+TGG	+	chr3.3:89779542-89779561	MS.gene40345:CDS	35.0%
TGCTTTGTCTTTATCAGACT+TGG	-	chr3.3:89779520-89779539	None:intergenic	35.0%
TGTTGTAGAAATTGGTGGAA+AGG	-	chr3.3:89779368-89779387	None:intergenic	35.0%
TTTCCACCAATTTCTACAAC+AGG	+	chr3.3:89779367-89779386	MS.gene40345:CDS	35.0%
CATATGAAGTAACCACCTCT+CGG	-	chr3.3:89780088-89780107	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	89779252	89780359	89779252	ID=MS.gene40345
chr3.3	mRNA	89779252	89780359	89779252	ID=MS.gene40345.t1;Parent=MS.gene40345
chr3.3	exon	89779252	89779388	89779252	ID=MS.gene40345.t1.exon1;Parent=MS.gene40345.t1
chr3.3	CDS	89779252	89779388	89779252	ID=cds.MS.gene40345.t1;Parent=MS.gene40345.t1
chr3.3	exon	89779476	89779606	89779476	ID=MS.gene40345.t1.exon2;Parent=MS.gene40345.t1
chr3.3	CDS	89779476	89779606	89779476	ID=cds.MS.gene40345.t1;Parent=MS.gene40345.t1
chr3.3	exon	89780031	89780157	89780031	ID=MS.gene40345.t1.exon3;Parent=MS.gene40345.t1
chr3.3	CDS	89780031	89780157	89780031	ID=cds.MS.gene40345.t1;Parent=MS.gene40345.t1
chr3.3	exon	89780260	89780359	89780260	ID=MS.gene40345.t1.exon4;Parent=MS.gene40345.t1
chr3.3	CDS	89780260	89780359	89780260	ID=cds.MS.gene40345.t1;Parent=MS.gene40345.t1

Gene Sequence

>MS.gene40345

ATGCAGAATCTGCAAGAGAAGGCTTCTGAATGGAGTGGTGTTGAGACAAATCATGCTTTTGCCATTGATGACACCAACTTGTTTCAAAAGCTAGGCCTTCAAACTTTCATTAACCTTTCCACCAATTTCTACAACAGGTTCTATATATATTCAACTTATATATTTCAATATTAAATAACCTTTCTTTACTAAGTTCATGACAATTAATGGTTGTGCTATAATAGAGTGTATGATGACGATGAGGAGTGGTTTGGTTCAATATTTGCCAAGTCTGATAAAGACAAAGCAATTCAAAACCAGTACGAATTCTTGGTCCAGAGAATGGGAGGTCCTCCTCTGTATTCTCAGAGAAGAGGTCAATATTCTTTATTTTATTTTTATTTCACTTTTCATAGAAACACTTTTAGATTTTTAACTTTTCGGAAAAATACTTCTAATTAGTGATTACTATTTTACTGATTTTTTTGTACTCAAGTAAGCAAACAATATGATAGATTTTTTTCAAAAAATAAATAAATACTATTATAGATATATTTTGAAAAATGCTATTAATTCTTGATTAATTTAACACTACTAACAATTTTTTTTTAGTGTATGTGATTTAGTCAATAATATTCTTTATTTGGGGATGGTTAGTAAAATGACAGGTTTTGAACTTACTACACAATGAGTTTATAAGTGATTATTGCCTAAGCTTTGAAACCTATATATATTTAGGTCATATATATCTCTAATAAATGTGTGGCTTAGTTCATTTGCTACCGTACTTCACATTACAGGACATCCTGCTCTAATTACTAGACATCGACCATTTCCTGTGACACATGAAGCTGCCGAGAGGTGGTTACTTCATATGCAACAAGCATTGGACAATATTTCAGATATAGATCATGATTCCAAGATAATGTTGATTAACTTTTTCAGATTTATTATCTTCACTTTGCAGAAATCAAATCAATAAAAATAAATAATGTTCATGATATAACAACCTGTGTTTTTACTTTTTAGGCACACTGCATATTTTCTTGTTGCCGGAGTTGAAAAGAAGAATCAAAGCCTTCACCCTTGCAAGGATGCAGCTGGAAGGCATCCATGTAAAAACTTTTAA

Protein sequence

>MS.gene40345.t1

MQNLQEKASEWSGVETNHAFAIDDTNLFQKLGLQTFINLSTNFYNRVYDDDEEWFGSIFAKSDKDKAIQNQYEFLVQRMGGPPLYSQRRGHPALITRHRPFPVTHEAAERWLLHMQQALDNISDIDHDSKIMHTAYFLVAGVEKKNQSLHPCKDAAGRHPCKNF