Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40371.t1 | XP_003603557.1 | 99.7 | 324 | 1 | 0 | 1 | 324 | 1 | 324 | 4.00E-164 | 587.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40371.t1 | Q94B65 | 81.5 | 324 | 59 | 1 | 1 | 324 | 1 | 323 | 1.2e-135 | 484.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40371.t1 | G7J2T9 | 99.7 | 324 | 1 | 0 | 1 | 324 | 1 | 324 | 2.9e-164 | 587.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40371 | MS.gene032018 | PPI |
| MS.gene40371 | MS.gene008096 | PPI |
| MS.gene69267 | MS.gene40371 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40371.t1 | MTR_3g109070 | 99.691 | 324 | 1 | 0 | 1 | 324 | 1 | 324 | 0.0 | 645 |
| MS.gene40371.t1 | MTR_3g109070 | 99.630 | 270 | 1 | 0 | 1 | 270 | 1 | 270 | 0.0 | 531 |
| MS.gene40371.t1 | MTR_3g109070 | 99.550 | 222 | 1 | 0 | 1 | 222 | 1 | 222 | 3.94e-158 | 442 |
| MS.gene40371.t1 | MTR_2g085160 | 27.835 | 291 | 191 | 4 | 33 | 306 | 40 | 328 | 4.13e-25 | 103 |
| MS.gene40371.t1 | MTR_2g085160 | 28.511 | 235 | 166 | 1 | 72 | 306 | 37 | 269 | 7.75e-24 | 99.0 |
| MS.gene40371.t1 | MTR_5g091610 | 86.000 | 50 | 7 | 0 | 222 | 271 | 192 | 241 | 1.27e-18 | 84.3 |
| MS.gene40371.t1 | MTR_1g012590 | 28.696 | 230 | 147 | 4 | 18 | 232 | 41 | 268 | 6.30e-18 | 82.8 |
| MS.gene40371.t1 | MTR_1g012590 | 28.507 | 221 | 137 | 4 | 18 | 217 | 41 | 261 | 2.24e-17 | 80.9 |
| MS.gene40371.t1 | MTR_3g463360 | 24.904 | 261 | 185 | 4 | 16 | 267 | 103 | 361 | 2.04e-15 | 76.6 |
| MS.gene40371.t1 | MTR_4g113270 | 28.077 | 260 | 163 | 7 | 20 | 265 | 18 | 267 | 3.88e-13 | 69.7 |
| MS.gene40371.t1 | MTR_4g113270 | 28.077 | 260 | 163 | 7 | 20 | 265 | 18 | 267 | 4.58e-13 | 69.3 |
| MS.gene40371.t1 | MTR_2g094640 | 23.077 | 312 | 224 | 8 | 7 | 311 | 2 | 304 | 1.60e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40371.t1 | AT4G31600 | 81.481 | 324 | 59 | 1 | 1 | 324 | 1 | 323 | 0.0 | 536 |
| MS.gene40371.t1 | AT4G31600 | 80.531 | 226 | 43 | 1 | 1 | 226 | 1 | 225 | 1.00e-126 | 365 |
| MS.gene40371.t1 | AT2G14695 | 28.840 | 319 | 208 | 6 | 4 | 306 | 29 | 344 | 2.64e-33 | 125 |
| MS.gene40371.t1 | AT4G32272 | 30.565 | 301 | 193 | 6 | 18 | 304 | 42 | 340 | 3.32e-33 | 125 |
| MS.gene40371.t1 | AT4G32272 | 30.272 | 294 | 189 | 6 | 25 | 304 | 64 | 355 | 2.07e-31 | 121 |
| MS.gene40371.t1 | AT5G19980 | 25.740 | 338 | 213 | 11 | 4 | 323 | 5 | 322 | 6.06e-12 | 66.2 |
Find 0 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTTTTTTTTTTTTAAGT+AGG | + | 24209:54911-54930 | MS.gene40371:intron | 10.0% |
| !! | AATAATACAGATAAAGAATA+TGG | - | 24209:56210-56229 | None:intergenic | 15.0% |
| !! | ATAATAAGAAACATCAAAAA+CGG | - | 24209:56171-56190 | None:intergenic | 15.0% |
| !! | ATAATACAGATAAAGAATAT+GGG | - | 24209:56209-56228 | None:intergenic | 15.0% |
| !! | ATTATACAATATAGACAAAT+AGG | - | 24209:56862-56881 | None:intergenic | 15.0% |
| !! | TTTAAGTAGGTTTAAATTAA+GGG | + | 24209:54924-54943 | MS.gene40371:intron | 15.0% |
| !!! | CAGAAAAAAGTATATATATT+TGG | + | 24209:54818-54837 | MS.gene40371:intron | 15.0% |
| !!! | CTTTTTTCTGATTATATTTA+AGG | - | 24209:54808-54827 | None:intergenic | 15.0% |
| !!! | TTATTTTGAGTGAAAAAAAT+AGG | - | 24209:56622-56641 | None:intergenic | 15.0% |
| !!! | TTTTAAGTAGGTTTAAATTA+AGG | + | 24209:54923-54942 | MS.gene40371:intron | 15.0% |
| !! | AAATACAAACAAAAGATGAA+TGG | - | 24209:57401-57420 | None:intergenic | 20.0% |
| !! | AAATGTAATGTTTGTTTGAT+TGG | + | 24209:55590-55609 | MS.gene40371:intron | 20.0% |
| !! | AATCTTGTTGAAAGAAAAAT+AGG | + | 24209:56722-56741 | MS.gene40371:intron | 20.0% |
| !! | AATGTAATGTTTGTTTGATT+GGG | + | 24209:55591-55610 | MS.gene40371:intron | 20.0% |
| !! | ATCTTGTTGAAAGAAAAATA+GGG | + | 24209:56723-56742 | MS.gene40371:intron | 20.0% |
| !! | GGAAAAACATACTTATATTT+AGG | + | 24209:54708-54727 | MS.gene40371:intron | 20.0% |
| !! | TTCCCTAAAAAAAAAGAAAA+AGG | - | 24209:54692-54711 | None:intergenic | 20.0% |
| !! | TTTATCTGTATTATTTGCAA+AGG | + | 24209:56215-56234 | MS.gene40371:CDS | 20.0% |
| !!! | AGACCTTTTTCTTTTTTTTT+AGG | + | 24209:54686-54705 | MS.gene40371:intron | 20.0% |
| !!! | ATTTTGATCTACTTACTATT+AGG | + | 24209:56447-56466 | MS.gene40371:intron | 20.0% |
| !!! | CTTTTATCTTAATGAATTTC+TGG | + | 24209:55708-55727 | MS.gene40371:intron | 20.0% |
| !!! | GACCTTTTTCTTTTTTTTTA+GGG | + | 24209:54687-54706 | MS.gene40371:intron | 20.0% |
| !!! | TAAATATAAGCATTTTGGAA+AGG | - | 24209:54744-54763 | None:intergenic | 20.0% |
| !!! | TCAGTTCTAAATTATATCAT+TGG | + | 24209:56938-56957 | MS.gene40371:intron | 20.0% |
| !!! | TTTCTGATTATATTTAAGGT+AGG | - | 24209:54804-54823 | None:intergenic | 20.0% |
| !!! | TTTTTTGTTTGTTAATGTCA+AGG | + | 24209:55274-55293 | MS.gene40371:intron | 20.0% |
| ! | AAAATCTCTTGATTAAACTG+TGG | + | 24209:55346-55365 | MS.gene40371:intron | 25.0% |
| ! | AAGCACAAAACATTTAGTAT+AGG | - | 24209:56479-56498 | None:intergenic | 25.0% |
| ! | AGAACCTAATATTGATACAT+AGG | + | 24209:57369-57388 | MS.gene40371:intron | 25.0% |
| ! | AGCACAAAACATTTAGTATA+GGG | - | 24209:56478-56497 | None:intergenic | 25.0% |
| ! | AGTGTAAACTCTACTAAAAT+TGG | - | 24209:55811-55830 | None:intergenic | 25.0% |
| ! | ATGTAAGTGTAAACATGATT+TGG | - | 24209:54845-54864 | None:intergenic | 25.0% |
| ! | CATTATAGAAAAATGAAACC+GGG | - | 24209:55098-55117 | None:intergenic | 25.0% |
| ! | GCATTATAGAAAAATGAAAC+CGG | - | 24209:55099-55118 | None:intergenic | 25.0% |
| ! | GTATCTATTACTCCATTTAA+AGG | - | 24209:56010-56029 | None:intergenic | 25.0% |
| ! | TATGCCTATGTATCAATATT+AGG | - | 24209:57376-57395 | None:intergenic | 25.0% |
| ! | TCTTTATGGCAATATACATT+GGG | - | 24209:55164-55183 | None:intergenic | 25.0% |
| ! | TTACTCCATTTAAAGGATTA+TGG | - | 24209:56003-56022 | None:intergenic | 25.0% |
| ! | TTGAAAGAAAAATAGGGAAA+GGG | + | 24209:56729-56748 | MS.gene40371:intron | 25.0% |
| ! | TTGAATGAAGAAAGAATTGA+AGG | - | 24209:54320-54339 | None:intergenic | 25.0% |
| !! | AATCTACTTCATTTTCTTCA+AGG | + | 24209:54287-54306 | MS.gene40371:CDS | 25.0% |
| !! | ATTTTTCCTTTGACCTTTTT+GGG | + | 24209:55921-55940 | MS.gene40371:CDS | 25.0% |
| !! | CAATTTTCAGAATCCATTTT+GGG | - | 24209:55528-55547 | None:intergenic | 25.0% |
| !! | TACTTTTCATGCTTATGTTT+AGG | + | 24209:54866-54885 | MS.gene40371:intron | 25.0% |
| !! | TCAATTTTCAGAATCCATTT+TGG | - | 24209:55529-55548 | None:intergenic | 25.0% |
| !! | TTAATTTTGCCATGATAAGA+CGG | + | 24209:56815-56834 | MS.gene40371:intron | 25.0% |
| !! | TTGTATAAACTTTGTTGTGA+TGG | + | 24209:56996-57015 | MS.gene40371:intron | 25.0% |
| !!! | CTACAGTTGTATTTATTTTG+CGG | + | 24209:55762-55781 | MS.gene40371:intron | 25.0% |
| !!! | GAGTTATTCTTTTTCATTTC+TGG | + | 24209:57178-57197 | MS.gene40371:intron | 25.0% |
| !!! | TACAGTTGTATTTATTTTGC+GGG | + | 24209:55763-55782 | MS.gene40371:intron | 25.0% |
| !!! | TTTTGAGTGAAAAAAATAGG+TGG | - | 24209:56619-56638 | None:intergenic | 25.0% |
| AAAGAAACTGCTAAAAGTCT+TGG | + | 24209:56414-56433 | MS.gene40371:intron | 30.0% | |
| AAATGAAGTAGATTCTGCAT+CGG | - | 24209:54281-54300 | None:intergenic | 30.0% | |
| AAATGCCAACATTCAAAACA+TGG | - | 24209:56287-56306 | None:intergenic | 30.0% | |
| AAATGCTTATATTTACGAGC+AGG | + | 24209:54749-54768 | MS.gene40371:intron | 30.0% | |
| AATGCTTATATTTACGAGCA+GGG | + | 24209:54750-54769 | MS.gene40371:intron | 30.0% | |
| ACAAATAGGTGTTCAATTAC+TGG | - | 24209:56848-56867 | None:intergenic | 30.0% | |
| AGAAGAATAAGAAGAACCAT+TGG | + | 24209:55424-55443 | MS.gene40371:intron | 30.0% | |
| ATAAGAAGAACCATTGGTAA+CGG | + | 24209:55430-55449 | MS.gene40371:intron | 30.0% | |
| ATACACTTTGGTCGAAAAAT+GGG | + | 24209:55024-55043 | MS.gene40371:CDS | 30.0% | |
| ATGTTGATGCAGTTTAATTG+CGG | + | 24209:54380-54399 | MS.gene40371:intron | 30.0% | |
| ATGTTTCTTATTATAGCCAC+AGG | + | 24209:56177-56196 | MS.gene40371:CDS | 30.0% | |
| CAATGTATATTGCCATAAAG+AGG | + | 24209:55163-55182 | MS.gene40371:CDS | 30.0% | |
| CTCTTTATGGCAATATACAT+TGG | - | 24209:55165-55184 | None:intergenic | 30.0% | |
| CTTGGTTAATGTTATGAAGA+GGG | + | 24209:55455-55474 | MS.gene40371:intron | 30.0% | |
| GAAAAAAAGTAAGACAGTGA+AGG | + | 24209:57595-57614 | MS.gene40371:CDS | 30.0% | |
| GAGTTTACACTCAATAGAAA+TGG | + | 24209:55820-55839 | MS.gene40371:intron | 30.0% | |
| GCACAAAACATTTAGTATAG+GGG | - | 24209:56477-56496 | None:intergenic | 30.0% | |
| GTTGAAAGAAAAATAGGGAA+AGG | + | 24209:56728-56747 | MS.gene40371:intron | 30.0% | |
| GTTGTCCATAATCCTTTAAA+TGG | + | 24209:55995-56014 | MS.gene40371:intron | 30.0% | |
| TATACACTTTGGTCGAAAAA+TGG | + | 24209:55023-55042 | MS.gene40371:CDS | 30.0% | |
| TCGAAACATTATTCCCAAAA+TGG | + | 24209:55512-55531 | MS.gene40371:intron | 30.0% | |
| TCTAGTGACAGAAAATTCTA+TGG | - | 24209:57352-57371 | None:intergenic | 30.0% | |
| TGTTTCTTATTATAGCCACA+GGG | + | 24209:56178-56197 | MS.gene40371:CDS | 30.0% | |
| TTCTGGTAGAATAGACATTA+TGG | + | 24209:55725-55744 | MS.gene40371:intron | 30.0% | |
| ! | AATTTAAGTTTGTGGGAACT+CGG | + | 24209:56681-56700 | MS.gene40371:intron | 30.0% |
| ! | CTGATTATATTTAAGGTAGG+AGG | - | 24209:54801-54820 | None:intergenic | 30.0% |
| ! | GATTTTTCCTTTGACCTTTT+TGG | + | 24209:55920-55939 | MS.gene40371:CDS | 30.0% |
| ! | GCTCGTAAATATAAGCATTT+TGG | - | 24209:54749-54768 | None:intergenic | 30.0% |
| ! | GGATTCTGAAAATTGAAGAA+GGG | + | 24209:55533-55552 | MS.gene40371:intron | 30.0% |
| ! | TAATTTTGCCATGATAAGAC+GGG | + | 24209:56816-56835 | MS.gene40371:intron | 30.0% |
| ! | TGGAGAGAATTTAAGTTTGT+GGG | + | 24209:56674-56693 | MS.gene40371:intron | 30.0% |
| ! | TGGATTCTGAAAATTGAAGA+AGG | + | 24209:55532-55551 | MS.gene40371:intron | 30.0% |
| ! | TTATTGTTTCTTCAGACCTT+TGG | + | 24209:57470-57489 | MS.gene40371:intron | 30.0% |
| ! | TTGGAGAGAATTTAAGTTTG+TGG | + | 24209:56673-56692 | MS.gene40371:intron | 30.0% |
| ! | TTTCATTTCTGTTTTCTTCC+AGG | + | 24209:55955-55974 | MS.gene40371:CDS | 30.0% |
| !!! | ACAGTTGTATTTATTTTGCG+GGG | + | 24209:55764-55783 | MS.gene40371:intron | 30.0% |
| !!! | ATTTTTTGTCAGCTTAAGAG+AGG | - | 24209:55660-55679 | None:intergenic | 30.0% |
| !!! | TTTTTTGTCAGCTTAAGAGA+GGG | - | 24209:55659-55678 | None:intergenic | 30.0% |
| AAAATAACACCTACCTGTTG+AGG | + | 24209:56635-56654 | MS.gene40371:intron | 35.0% | |
| AACAATAGTGCACAAGAACA+TGG | - | 24209:57249-57268 | None:intergenic | 35.0% | |
| CAAAATATCAGCATATCACC+TGG | - | 24209:55976-55995 | None:intergenic | 35.0% | |
| CTGTTCACTGCTGTAATATA+AGG | - | 24209:55565-55584 | None:intergenic | 35.0% | |
| CTTCTACCTACTAAGACTAT+TGG | + | 24209:55617-55636 | MS.gene40371:intron | 35.0% | |
| GAAAAAGAATAACTCTGCGA+AGG | - | 24209:57173-57192 | None:intergenic | 35.0% | |
| GAAAATTCTATGGCAAACAC+AGG | - | 24209:57342-57361 | None:intergenic | 35.0% | |
| GCTTGGTTAATGTTATGAAG+AGG | + | 24209:55454-55473 | MS.gene40371:intron | 35.0% | |
| GCTTTAACTACAACGATTGT+GGG | + | 24209:57275-57294 | MS.gene40371:CDS | 35.0% | |
| GTCAAAGGAAAAATCTCCAA+GGG | - | 24209:55915-55934 | None:intergenic | 35.0% | |
| GTCATATGGAATTGCTTCAA+TGG | + | 24209:54407-54426 | MS.gene40371:CDS | 35.0% | |
| GTTTCTTATTATAGCCACAG+GGG | + | 24209:56179-56198 | MS.gene40371:CDS | 35.0% | |
| TCTGAAAATTGAAGAAGGGA+AGG | + | 24209:55537-55556 | MS.gene40371:intron | 35.0% | |
| TGCTTTAACTACAACGATTG+TGG | + | 24209:57274-57293 | MS.gene40371:CDS | 35.0% | |
| TGGTCAACAAAGATCAAAGA+GGG | + | 24209:55366-55385 | MS.gene40371:intron | 35.0% | |
| TTTCATGCTTATGTTTAGGC+TGG | + | 24209:54870-54889 | MS.gene40371:intron | 35.0% | |
| ! | ACCTTTGGTTTCTTCTTACT+GGG | + | 24209:57485-57504 | MS.gene40371:CDS | 35.0% |
| ! | ATGCTACCAATAGTCTTAGT+AGG | - | 24209:55626-55645 | None:intergenic | 35.0% |
| ! | ATTTAAGTTTGTGGGAACTC+GGG | + | 24209:56682-56701 | MS.gene40371:intron | 35.0% |
| ! | CAATAGTCTTAGTAGGTAGA+AGG | - | 24209:55619-55638 | None:intergenic | 35.0% |
| ! | CGTTCATAAACTAGCTTCAA+AGG | - | 24209:55317-55336 | None:intergenic | 35.0% |
| ! | TAAGAAGAACCATTGGTAAC+GGG | + | 24209:55431-55450 | MS.gene40371:intron | 35.0% |
| ! | TAGTATCTGATAACGTGACA+TGG | + | 24209:57078-57097 | MS.gene40371:intron | 35.0% |
| ! | TCATAAACTAGCTTCAAAGG+TGG | - | 24209:55314-55333 | None:intergenic | 35.0% |
| !! | CTTATTCTTTCGTTGGTGAT+GGG | + | 24209:57206-57225 | MS.gene40371:CDS | 35.0% |
| !! | GATATTGACTCCTTTCAAAC+TGG | - | 24209:55142-55161 | None:intergenic | 35.0% |
| !!! | CAGTTGTATTTATTTTGCGG+GGG | + | 24209:55765-55784 | MS.gene40371:intron | 35.0% |
| AAGCCATGCTATACCCAAAA+AGG | - | 24209:55937-55956 | None:intergenic | 40.0% | |
| ACCAAAGTGTATAAGCAAGG+TGG | - | 24209:55016-55035 | None:intergenic | 40.0% | |
| ACCACCTTGCTTATACACTT+TGG | + | 24209:55012-55031 | MS.gene40371:CDS | 40.0% | |
| ACCCAGTAAGAAGAAACCAA+AGG | - | 24209:57489-57508 | None:intergenic | 40.0% | |
| ACGATTGTGGGTGTTCTTAA+AGG | + | 24209:57287-57306 | MS.gene40371:CDS | 40.0% | |
| ACTTATCGCTGGATGTTTCA+TGG | + | 24209:55203-55222 | MS.gene40371:CDS | 40.0% | |
| AGTGAAGGTAGTTACAGATG+TGG | + | 24209:57610-57629 | MS.gene40371:CDS | 40.0% | |
| ATCCAGTCACATTCAAAGCA+TGG | - | 24209:57523-57542 | None:intergenic | 40.0% | |
| ATGATGCATGCTAAGTGTCT+TGG | - | 24209:54602-54621 | None:intergenic | 40.0% | |
| ATGCTTATGTTTAGGCTGGA+GGG | + | 24209:54874-54893 | MS.gene40371:intron | 40.0% | |
| CCATCACCAACGAAAGAATA+AGG | - | 24209:57208-57227 | None:intergenic | 40.0% | |
| CTTATCGCTGGATGTTTCAT+GGG | + | 24209:55204-55223 | MS.gene40371:CDS | 40.0% | |
| GAAACCATTACCTGAGTTGT+AGG | - | 24209:55240-55259 | None:intergenic | 40.0% | |
| GCTATACCCAAAAAGGTCAA+AGG | - | 24209:55930-55949 | None:intergenic | 40.0% | |
| GGTCAAAGGAAAAATCTCCA+AGG | - | 24209:55916-55935 | None:intergenic | 40.0% | |
| GGTGATCCTTATTCTTTCGT+TGG | + | 24209:57199-57218 | MS.gene40371:CDS | 40.0% | |
| GTGGTCAACAAAGATCAAAG+AGG | + | 24209:55365-55384 | MS.gene40371:intron | 40.0% | |
| GTTCCTTTCTGTCGTATATC+AGG | + | 24209:55844-55863 | MS.gene40371:intron | 40.0% | |
| TCACCTGATATACGACAGAA+AGG | - | 24209:55850-55869 | None:intergenic | 40.0% | |
| TCGACCAAAGTGTATAAGCA+AGG | - | 24209:55019-55038 | None:intergenic | 40.0% | |
| TGAAATTACCTGAGTGTGGT+GGG | + | 24209:56754-56773 | MS.gene40371:intron | 40.0% | |
| TGGAATTGCTTCAATGGCAA+TGG | + | 24209:54413-54432 | MS.gene40371:CDS | 40.0% | |
| TTAATTGCGGCAGTGTCATA+TGG | + | 24209:54393-54412 | MS.gene40371:CDS | 40.0% | |
| TTATCGCTGGATGTTTCATG+GGG | + | 24209:55205-55224 | MS.gene40371:CDS | 40.0% | |
| TTTGCTTTGGCCAGTTTGAA+AGG | + | 24209:55129-55148 | MS.gene40371:CDS | 40.0% | |
| ! | ACCATAGCTTGCAACATATC+TGG | + | 24209:57031-57050 | MS.gene40371:intron | 40.0% |
| ! | CCATAGCTTGCAACATATCT+GGG | + | 24209:57032-57051 | MS.gene40371:intron | 40.0% |
| ! | CCTTATTCTTTCGTTGGTGA+TGG | + | 24209:57205-57224 | MS.gene40371:CDS | 40.0% |
| ! | GACCTTTGGTTTCTTCTTAC+TGG | + | 24209:57484-57503 | MS.gene40371:intron | 40.0% |
| ! | TCTTAAAGGAGTTGGTTCCA+CGG | + | 24209:57301-57320 | MS.gene40371:CDS | 40.0% |
| ! | TGAGAATGGACTTTCATCAG+TGG | + | 24209:56113-56132 | MS.gene40371:CDS | 40.0% |
| ! | TGCTTTGAATGTGACTGGAT+TGG | + | 24209:57523-57542 | MS.gene40371:CDS | 40.0% |
| ! | TTTGGTTTCTTCTTACTGGG+TGG | + | 24209:57488-57507 | MS.gene40371:CDS | 40.0% |
| !! | AAGAAGAACCATTGGTAACG+GGG | + | 24209:55432-55451 | MS.gene40371:intron | 40.0% |
| !! | AAGTAGATTCTGCATCGGTT+CGG | - | 24209:54276-54295 | None:intergenic | 40.0% |
| !! | TATGAAGAGGGTGTTTAAGC+TGG | + | 24209:55467-55486 | MS.gene40371:intron | 40.0% |
| !!! | TGACCTTTTTGGGTATAGCA+TGG | + | 24209:55931-55950 | MS.gene40371:CDS | 40.0% |
| AAACCTCTCAAACCAGACTG+AGG | - | 24209:56584-56603 | None:intergenic | 45.0% | |
| AAGAGCAAGAGGGGTAGATT+TGG | + | 24209:55053-55072 | MS.gene40371:CDS | 45.0% | |
| AAGAGGGGTAGATTTGGCAA+CGG | + | 24209:55059-55078 | MS.gene40371:CDS | 45.0% | |
| AAGCGGTGTAAGCCTCTTTA+TGG | - | 24209:55178-55197 | None:intergenic | 45.0% | |
| AATGACTCTCCTCACTTTGC+AGG | + | 24209:54476-54495 | MS.gene40371:CDS | 45.0% | |
| ACAAGGTACATGGTCTGCAT+AGG | - | 24209:56072-56091 | None:intergenic | 45.0% | |
| AGAATATGGGAATTCCCCTG+TGG | - | 24209:56196-56215 | None:intergenic | 45.0% | |
| ATAACACCTACCTGTTGAGG+AGG | + | 24209:56638-56657 | MS.gene40371:intron | 45.0% | |
| ATGGGATACACAAGAGCAAG+AGG | + | 24209:55042-55061 | MS.gene40371:CDS | 45.0% | |
| CATGCTTATGTTTAGGCTGG+AGG | + | 24209:54873-54892 | MS.gene40371:intron | 45.0% | |
| CCCAGATATGTTGCAAGCTA+TGG | - | 24209:57035-57054 | None:intergenic | 45.0% | |
| GAAATTACCTGAGTGTGGTG+GGG | + | 24209:56755-56774 | MS.gene40371:intron | 45.0% | |
| GAAGGTAGTTACAGATGTGG+AGG | + | 24209:57613-57632 | MS.gene40371:CDS | 45.0% | |
| GAGACCTACAACTCAGGTAA+TGG | + | 24209:55233-55252 | MS.gene40371:intron | 45.0% | |
| GAGTTGTCAGGCAACTCAAA+GGG | + | 24209:56525-56544 | MS.gene40371:intron | 45.0% | |
| GCAAACAAACCTGCAAAGTG+AGG | - | 24209:54488-54507 | None:intergenic | 45.0% | |
| GGAAAAGACCCGTCTTATCA+TGG | - | 24209:56827-56846 | None:intergenic | 45.0% | |
| GGTGTGAAATTACCTGAGTG+TGG | + | 24209:56750-56769 | MS.gene40371:intron | 45.0% | |
| GTGAAATTACCTGAGTGTGG+TGG | + | 24209:56753-56772 | MS.gene40371:intron | 45.0% | |
| GTGGGTGTTCTTAAAGGAGT+TGG | + | 24209:57293-57312 | MS.gene40371:CDS | 45.0% | |
| TAACACCTACCTGTTGAGGA+GGG | + | 24209:56639-56658 | MS.gene40371:intron | 45.0% | |
| TGCCAATGTCGCATTTGCTT+TGG | + | 24209:55116-55135 | MS.gene40371:CDS | 45.0% | |
| TGGGATACACAAGAGCAAGA+GGG | + | 24209:55043-55062 | MS.gene40371:CDS | 45.0% | |
| TTGGTCATCAATACAGCTGG+TGG | + | 24209:57542-57561 | MS.gene40371:CDS | 45.0% | |
| ! | CAGATTTTTCCACCAGCACA+AGG | - | 24209:56089-56108 | None:intergenic | 45.0% |
| ! | CTTGTGCTGGTGGAAAAATC+TGG | + | 24209:56087-56106 | MS.gene40371:CDS | 45.0% |
| ! | GAAAAATCTGGCGCTGAGAA+TGG | + | 24209:56099-56118 | MS.gene40371:CDS | 45.0% |
| ! | GTCCATGCTTTGAATGTGAC+TGG | + | 24209:57518-57537 | MS.gene40371:CDS | 45.0% |
| ! | TCAGTGATATTGACTGCTGC+TGG | + | 24209:55875-55894 | MS.gene40371:CDS | 45.0% |
| !! | CGCTGCCATGTTTTGAATGT+TGG | + | 24209:56279-56298 | MS.gene40371:intron | 45.0% |
| !! | CTTTGAGTTGCCTGACAACT+CGG | - | 24209:56526-56545 | None:intergenic | 45.0% |
| !! | GGATTGGTCATCAATACAGC+TGG | + | 24209:57539-57558 | MS.gene40371:CDS | 45.0% |
| AACACCTACCTGTTGAGGAG+GGG | + | 24209:56640-56659 | MS.gene40371:intron | 50.0% | |
| AGTTTGTGGGAACTCGGGAT+TGG | + | 24209:56687-56706 | MS.gene40371:intron | 50.0% | |
| CATGGTCTGCATAGGAGAGT+AGG | - | 24209:56064-56083 | None:intergenic | 50.0% | |
| CCAGCGATAAGTACAGCAAG+CGG | - | 24209:55195-55214 | None:intergenic | 50.0% | |
| CGAGTTGTCAGGCAACTCAA+AGG | + | 24209:56524-56543 | MS.gene40371:intron | 50.0% | |
| CTCTCAAACCAGACTGAGGA+GGG | - | 24209:56580-56599 | None:intergenic | 50.0% | |
| CTGGATGTTTCATGGGGAAG+GGG | + | 24209:55211-55230 | MS.gene40371:CDS | 50.0% | |
| GCTGGATGTTTCATGGGGAA+GGG | + | 24209:55210-55229 | MS.gene40371:CDS | 50.0% | |
| GCTTGTCTTTCCGAGTTGTC+AGG | + | 24209:56513-56532 | MS.gene40371:intron | 50.0% | |
| GGCCAAAGCAAATGCGACAT+TGG | - | 24209:55121-55140 | None:intergenic | 50.0% | |
| GGGATACACAAGAGCAAGAG+GGG | + | 24209:55044-55063 | MS.gene40371:CDS | 50.0% | |
| GTTTGTGGGAACTCGGGATT+GGG | + | 24209:56688-56707 | MS.gene40371:intron | 50.0% | |
| TAACCAAGCCCCGTTACCAA+TGG | - | 24209:55443-55462 | None:intergenic | 50.0% | |
| TCTCAAACCAGACTGAGGAG+GGG | - | 24209:56579-56598 | None:intergenic | 50.0% | |
| TTCCACCAGCACAAGGTACA+TGG | - | 24209:56082-56101 | None:intergenic | 50.0% | |
| ! | AGTTGGTTCCACGGTAAGCT+AGG | + | 24209:57310-57329 | MS.gene40371:intron | 50.0% |
| ! | TCAATACAGCTGGTGGTGTG+TGG | + | 24209:57549-57568 | MS.gene40371:CDS | 50.0% |
| ACACCTACCTGTTGAGGAGG+GGG | + | 24209:56641-56660 | MS.gene40371:intron | 55.0% | |
| CCTCTCAAACCAGACTGAGG+AGG | - | 24209:56581-56600 | None:intergenic | 55.0% | |
| CGCTGGATGTTTCATGGGGA+AGG | + | 24209:55209-55228 | MS.gene40371:CDS | 55.0% | |
| GAAGGGGAGACCTACAACTC+AGG | + | 24209:55227-55246 | MS.gene40371:CDS | 55.0% | |
| GACCATGTACCTTGTGCTGG+TGG | + | 24209:56077-56096 | MS.gene40371:intron | 55.0% | |
| GCAGACCATGTACCTTGTGC+TGG | + | 24209:56074-56093 | MS.gene40371:intron | 55.0% | |
| GGAGTTCTCATAGCAGCCCT+TGG | + | 24209:55896-55915 | MS.gene40371:CDS | 55.0% | |
| GGATCACTCCTAGCTTACCG+TGG | - | 24209:57321-57340 | None:intergenic | 55.0% | |
| TGAAACCGGGAGCAGTTGCT+TGG | - | 24209:55085-55104 | None:intergenic | 55.0% | |
| ! | ATTACCTGAGTGTGGTGGGG+TGG | + | 24209:56758-56777 | MS.gene40371:intron | 55.0% |
| ! | CCTCCTCAGTCTGGTTTGAG+AGG | + | 24209:56578-56597 | MS.gene40371:intron | 55.0% |
| !! | CCGCTTGCTGTACTTATCGC+TGG | + | 24209:55192-55211 | MS.gene40371:CDS | 55.0% |
| !! | GAACCATTGGTAACGGGGCT+TGG | + | 24209:55437-55456 | MS.gene40371:intron | 55.0% |
| AACGGCCAAGCAACTGCTCC+CGG | + | 24209:55077-55096 | MS.gene40371:CDS | 60.0% | |
| ACCTACCTGTTGAGGAGGGG+GGG | + | 24209:56643-56662 | MS.gene40371:intron | 60.0% | |
| CACCTACCTGTTGAGGAGGG+GGG | + | 24209:56642-56661 | MS.gene40371:intron | 60.0% | |
| CAGACTGAGGAGGGGAAGAC+TGG | - | 24209:56571-56590 | None:intergenic | 60.0% | |
| CAGTCTTCCCCTCCTCAGTC+TGG | + | 24209:56569-56588 | MS.gene40371:intron | 60.0% | |
| CTTTCCACCCCACCACACTC+AGG | - | 24209:56765-56784 | None:intergenic | 60.0% | |
| ACCCCCCCTCCTCAACAGGT+AGG | - | 24209:56647-56666 | None:intergenic | 65.0% | |
| CTCAACCCCCCCTCCTCAAC+AGG | - | 24209:56651-56670 | None:intergenic | 65.0% | |
| CTGTTGAGGAGGGGGGGTTG+AGG | + | 24209:56649-56668 | MS.gene40371:intron | 65.0% | |
| GAGGAGGGGGGGTTGAGGTT+TGG | + | 24209:56654-56673 | MS.gene40371:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 24209 | gene | 54265 | 57649 | 54265 | ID=MS.gene40371 |
| 24209 | mRNA | 54265 | 57649 | 54265 | ID=MS.gene40371.t1;Parent=MS.gene40371 |
| 24209 | exon | 54265 | 54308 | 54265 | ID=MS.gene40371.t1.exon1;Parent=MS.gene40371.t1 |
| 24209 | CDS | 54265 | 54308 | 54265 | ID=cds.MS.gene40371.t1;Parent=MS.gene40371.t1 |
| 24209 | exon | 54392 | 54497 | 54392 | ID=MS.gene40371.t1.exon2;Parent=MS.gene40371.t1 |
| 24209 | CDS | 54392 | 54497 | 54392 | ID=cds.MS.gene40371.t1;Parent=MS.gene40371.t1 |
| 24209 | exon | 55003 | 55248 | 55003 | ID=MS.gene40371.t1.exon3;Parent=MS.gene40371.t1 |
| 24209 | CDS | 55003 | 55248 | 55003 | ID=cds.MS.gene40371.t1;Parent=MS.gene40371.t1 |
| 24209 | exon | 55866 | 55976 | 55866 | ID=MS.gene40371.t1.exon4;Parent=MS.gene40371.t1 |
| 24209 | CDS | 55866 | 55976 | 55866 | ID=cds.MS.gene40371.t1;Parent=MS.gene40371.t1 |
| 24209 | exon | 56078 | 56236 | 56078 | ID=MS.gene40371.t1.exon5;Parent=MS.gene40371.t1 |
| 24209 | CDS | 56078 | 56236 | 56078 | ID=cds.MS.gene40371.t1;Parent=MS.gene40371.t1 |
| 24209 | exon | 57179 | 57322 | 57179 | ID=MS.gene40371.t1.exon6;Parent=MS.gene40371.t1 |
| 24209 | CDS | 57179 | 57322 | 57179 | ID=cds.MS.gene40371.t1;Parent=MS.gene40371.t1 |
| 24209 | exon | 57485 | 57649 | 57485 | ID=MS.gene40371.t1.exon7;Parent=MS.gene40371.t1 |
| 24209 | CDS | 57485 | 57649 | 57485 | ID=cds.MS.gene40371.t1;Parent=MS.gene40371.t1 |
| Gene Sequence |
| Protein sequence |
