AlfalfaGEDB | MS.gene056310

M. sativa cultivar XinJiangDaYe / MS.gene056310

KEGG: K00660
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009058 GO:0016740 GO:0016746 GO:0016747
PFAM: PF00195.22 PF02797.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056310.t1	P30074.1	99.5	389	2	0	1	389	1	389	1.90E-221	778.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056310.t1	P30074	99.5	389	2	0	1	389	1	389	4.6e-224	778.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056310.t1	G7KR33	99.5	389	2	0	1	389	1	389	1.8e-221	777.7

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049312	MS.gene056310	0.815908	7.26E-52	-1.69E-46
MS.gene050129	MS.gene056310	0.801327	9.49E-49	-1.69E-46
MS.gene050363	MS.gene056310	0.836574	8.64E-57	-1.69E-46
MS.gene050380	MS.gene056310	0.822181	2.72E-53	-1.69E-46
MS.gene050381	MS.gene056310	0.8936	5.41E-75	-1.69E-46
MS.gene050504	MS.gene056310	-0.81323	2.84E-51	-1.69E-46
MS.gene050868	MS.gene056310	-0.833865	4.17E-56	-1.69E-46
MS.gene050871	MS.gene056310	-0.835379	1.74E-56	-1.69E-46
MS.gene050883	MS.gene056310	0.897061	2.02E-76	-1.69E-46
MS.gene051044	MS.gene056310	0.800553	1.37E-48	-1.69E-46

Showing 1 to 10 of 446 entries

Previous1 2 3 4 5…45Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	bit score
MS.gene056310.t1	MTR_7g016820	99.486	389	2	1	389	1	389	802
MS.gene056310.t1	MTR_7g016720	99.486	389	2	1	389	1	389	801
MS.gene056310.t1	MTR_7g016780	98.972	389	4	1	389	1	389	799
MS.gene056310.t1	MTR_7g016800	98.715	389	5	1	389	1	389	798
MS.gene056310.t1	MTR_7g016700	98.458	389	6	1	389	1	389	798
MS.gene056310.t1	MTR_1g098140	98.458	389	6	1	389	1	389	795
MS.gene056310.t1	MTR_5g007730	98.201	389	7	1	389	1	389	794
MS.gene056310.t1	MTR_1g097935	98.201	389	7	1	389	1	389	792
MS.gene056310.t1	MTR_1g097910	97.943	389	8	1	389	1	389	792
MS.gene056310.t1	MTR_5g007760	96.658	389	13	1	389	1	389	783

Showing 1 to 10 of 25 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056310.t1	AT5G13930	82.732	388	66	1	3	389	8	395	0.0	676
MS.gene056310.t1	AT4G34850	41.114	377	218	3	15	389	18	392	5.78e-98	297
MS.gene056310.t1	AT4G00040	40.051	392	223	6	1	387	1	385	1.19e-96	293
MS.gene056310.t1	AT1G02050	39.332	389	225	6	2	387	12	392	7.50e-88	271
MS.gene056310.t1	AT4G34850	40.625	320	187	2	72	389	1	319	1.96e-82	255
MS.gene056310.t1	AT3G52160	26.860	242	159	9	150	387	97	324	8.07e-12	66.2
MS.gene056310.t1	AT3G52160	26.860	242	159	9	150	387	210	437	1.98e-11	65.9

Showing 1 to 7 of 7 entries

Previous1Next

Find 95 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAACATTACTAAAGCAT+TGG	0.475145	7.3:-81792178	MS.gene056310:CDS
AAAGACGGATTGAAGACAAC+GGG	0.508808	7.3:-81791943	MS.gene056310:CDS
AACCTATATTTGAGATGGTT+TGG	0.308691	7.3:-81792305	MS.gene056310:CDS
AACGGGAGAAGGACTTGAAT+GGG	0.444037	7.3:-81791926	MS.gene056310:CDS
AAGTGAGTAATCTTTGACTT+TGG	0.381814	7.3:+81792648	None:intergenic
AATATAGGTTTCTCAATTTC+TGG	0.117134	7.3:+81792318	None:intergenic
ACAAGTGGTGTAGACATGCC+TGG	0.569592	7.3:-81792612	MS.gene056310:CDS
ACAATTGCTCCTGATAGTGA+AGG	0.642382	7.3:-81792273	MS.gene056310:CDS
ACCAGGACTTACCATTGAAA+CGG	0.510913	7.3:-81791884	MS.gene056310:CDS
ACCGTTTCAATGGTAAGTCC+TGG	0.536054	7.3:+81791883	None:intergenic

Showing 1 to 10 of 95 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GCCATATATTCACAAACATT+AGG	+	chr7.3:81792448-81792467	None:intergenic	30.0%
GGCAATATTAATATCATGAG+TGG	+	chr7.3:81792234-81792253	None:intergenic	30.0%
TGAGAAACCTATATTTGAGA+TGG	-	chr7.3:81792900-81792919	MS.gene056310:intron	30.0%
TTGTAATCAGAAATTCCCAA+TGG	+	chr7.3:81793072-81793091	None:intergenic	30.0%
ACCTTCTTAAAGATGTTCCT+GGG	-	chr7.3:81793001-81793020	MS.gene056310:intron	35.0%
CTTGAATGGGGTGTATTATT+TGG	-	chr7.3:81793297-81793316	MS.gene056310:CDS	35.0%
CTTTGTTCAACACAATTTGC+TGG	+	chr7.3:81791939-81791958	None:intergenic	35.0%
GGTGAAGGCTATAAAAGAAT+GGG	-	chr7.3:81792534-81792553	MS.gene056310:CDS	35.0%
GTCCAAACCATCTCAAATAT+AGG	+	chr7.3:81792910-81792929	None:intergenic	35.0%
GTGAAGGCTATAAAAGAATG+GGG	-	chr7.3:81792535-81792554	MS.gene056310:CDS	35.0%

Showing 1 to 10 of 121 entries

Previous1 2 3 4 5…13Next

Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	81791858	81793374	81791858	ID=MS.gene056310
chr7.3	mRNA	81791858	81793374	81791858	ID=MS.gene056310.t1;Parent=MS.gene056310
chr7.3	exon	81793197	81793374	81793197	ID=MS.gene056310.t1.exon1;Parent=MS.gene056310.t1
chr7.3	CDS	81793197	81793374	81793197	ID=cds.MS.gene056310.t1;Parent=MS.gene056310.t1
chr7.3	exon	81791858	81792849	81791858	ID=MS.gene056310.t1.exon2;Parent=MS.gene056310.t1
chr7.3	CDS	81791858	81792849	81791858	ID=cds.MS.gene056310.t1;Parent=MS.gene056310.t1

Gene Sequence

>MS.gene056310

ATGGTGAGTGTGTCTGAAATTCGTAAGGCTCAAAGGGCAGAAGGTCCTGCAACCATTTTGGCCATTGGCACTGCAAATCCAGCAAATTGTGTTGAACAAAGCACTTATCCTGATTTTTACTTTAAAATTACAAATAGTGAGCACAAAACCGAACTCAAAGAGAAATTTCAACGCATGTGTAAGTATTCTTTACCTCTATATTATTTTTAAAGTGAAAAAACTTACTTATTTACATTTATTTCTCTAGTGTTTTTTTTCTTTCATTTTGTGAATTGGACTAATTAGGTTCCATTTCAAATATATTTATTCTTGATCCATCATCACCATGTTTAAATTACTTAAAATACGGTAGAAATGTCTTTATTTTTAGCAACCACTCATGATATTAATATTGCCTACCAAATTGATACACATTATTTGTATTAAGAAAAGAATTATTTTATTGTCAAAAAAAGAGACCAATTATTATTTGATTGTTTTTGGTATTATTCTAAAATTGTTTGTCATTTCTTATAACTACTTCAGGTGATAAATCCATGATCAAGAGGAGATACATGTATCTAACAGAAGAGATTTTGAAAGAAAATCCTAATGTTTGTGAATATATGGCACCTTCATTAGATGCTAGGCAAGACATGGTGGTGGTAGAGGTGCCTAGGCTAGGGAAGGAGGCTGCGGTGAAGGCTATAAAAGAATGGGGTCAACCAAAGTCAAAGATTACTCACTTAATCGTTTGCACTACAAGTGGTGTAGACATGCCTGGAGCCGATTATCAACTCACCAAACTCTTAGGTCTTCGCCCATATGTGAAAAGGTACATGATGTACCAACAAGGGTGTTTTGCAGGTGGCACGGTGCTTCGTTTGGCTAAAGATTTGGCTGAGAACAACAAAGGTGCTCGTGTGTTGGTTGTTTGTTCTGAGGTCACCGCTGTCACATTTCGTGGCCCTAGTGATACTCACTTGGACAGCCTTGTTGGACAAGCACTATTTGGAGATGGAGCTGCTGCTCTTATTGTTGGCTCTGACCCAGTACCAGAAATTGAGAAACCTATATTTGAGATGGTTTGGACTGCACAAACAATTGCTCCTGATAGTGAAGGAGCCATTGATGGTCACCTTCGTGAAGCTGGACTAACATTTCACCTTCTTAAAGATGTTCCTGGGATTGTTTCAAAGAACATTACTAAAGCATTGGTTGAGGCTTTCGAGCCATTGGGAATTTCTGATTACAACTCAATCTTTTGGATTGCACATCCCGGTGGACCTGCAATTCTAGATCAAGTAGAGCAAAAGTTAGCCTTAAAGCCTGAAAAGATGAATGCAACTAGAGAAGTGCTAAGTGAATATGGAAATATGTCAAGTGCATGTGTTTTGTTTATCTTAGATGAAATGAGAAAGAAATCAACTAAAGACGGATTGAAGACAACGGGAGAAGGACTTGAATGGGGTGTATTATTTGGTTTTGGACCAGGACTTACCATTGAAACGGTTGTTTTGCGCAGCGTGGCTATATGA

Protein sequence

>MS.gene056310.t1

MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTKDGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVAI