AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056310.t1 MTR_7g016820 99.486 389 2 0 1 389 1 389 0.0 802
MS.gene056310.t1 MTR_7g016720 99.486 389 2 0 1 389 1 389 0.0 801
MS.gene056310.t1 MTR_7g016780 98.972 389 4 0 1 389 1 389 0.0 799
MS.gene056310.t1 MTR_7g016800 98.715 389 5 0 1 389 1 389 0.0 798
MS.gene056310.t1 MTR_7g016700 98.458 389 6 0 1 389 1 389 0.0 798
MS.gene056310.t1 MTR_1g098140 98.458 389 6 0 1 389 1 389 0.0 795
MS.gene056310.t1 MTR_5g007730 98.201 389 7 0 1 389 1 389 0.0 794
MS.gene056310.t1 MTR_1g097935 98.201 389 7 0 1 389 1 389 0.0 792
MS.gene056310.t1 MTR_1g097910 97.943 389 8 0 1 389 1 389 0.0 792
MS.gene056310.t1 MTR_5g007760 96.658 389 13 0 1 389 1 389 0.0 783
MS.gene056310.t1 MTR_5g007717 95.887 389 16 0 1 389 1 389 0.0 779
MS.gene056310.t1 MTR_5g007713 95.887 389 16 0 1 389 1 389 0.0 778
MS.gene056310.t1 MTR_3g083920 90.722 388 36 0 1 388 1 388 0.0 749
MS.gene056310.t1 MTR_3g083910 89.948 388 39 0 1 388 1 388 0.0 746
MS.gene056310.t1 MTR_2g058470 87.404 389 49 0 1 389 1 389 0.0 717
MS.gene056310.t1 MTR_3g086260 81.701 388 71 0 1 388 1 388 0.0 677
MS.gene056310.t1 MTR_7g084300 80.977 389 74 0 1 389 1 389 0.0 676
MS.gene056310.t1 MTR_7g113405 96.370 303 11 0 87 389 1 303 0.0 599
MS.gene056310.t1 MTR_3g088675 66.838 389 129 0 1 389 1 389 0.0 580
MS.gene056310.t1 MTR_5g007740 80.675 326 63 0 64 389 1 326 0.0 550
MS.gene056310.t1 MTR_5g007723 68.262 397 77 5 12 389 32 398 0.0 529
MS.gene056310.t1 MTR_5g007770 77.667 300 34 2 70 369 1 267 2.65e-167 469
MS.gene056310.t1 MTR_3g088670 48.974 390 185 6 10 388 2 388 4.13e-130 379
MS.gene056310.t1 MTR_4g075560 43.158 380 209 4 11 387 13 388 6.01e-104 312
MS.gene056310.t1 MTR_4g078730 37.802 373 225 2 15 387 24 389 2.34e-93 285
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056310.t1 AT5G13930 82.732 388 66 1 3 389 8 395 0.0 676
MS.gene056310.t1 AT4G34850 41.114 377 218 3 15 389 18 392 5.78e-98 297
MS.gene056310.t1 AT4G00040 40.051 392 223 6 1 387 1 385 1.19e-96 293
MS.gene056310.t1 AT1G02050 39.332 389 225 6 2 387 12 392 7.50e-88 271
MS.gene056310.t1 AT4G34850 40.625 320 187 2 72 389 1 319 1.96e-82 255
MS.gene056310.t1 AT3G52160 26.860 242 159 9 150 387 97 324 8.07e-12 66.2
MS.gene056310.t1 AT3G52160 26.860 242 159 9 150 387 210 437 1.98e-11 65.9

Find 95 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATAGGTTTCTCAATTTC+TGG 0.117134 7.3:+81792318 None:intergenic
CTTGAATGGGGTGTATTATT+TGG 0.169989 7.3:-81791913 MS.gene056310:CDS
TCCTAATGTTTGTGAATATA+TGG 0.250140 7.3:-81792766 MS.gene056310:CDS
AGAAGGTCCTGCAACCATTT+TGG 0.255937 7.3:-81793314 MS.gene056310:CDS
GGTTTCTCAATTTCTGGTAC+TGG 0.259605 7.3:+81792324 None:intergenic
TGGGGTGTATTATTTGGTTT+TGG 0.289261 7.3:-81791907 MS.gene056310:CDS
CTGATTACAACTCAATCTTT+TGG 0.293179 7.3:-81792128 MS.gene056310:CDS
AACCTATATTTGAGATGGTT+TGG 0.308691 7.3:-81792305 MS.gene056310:CDS
CTTGTTGGACAAGCACTATT+TGG 0.314421 7.3:-81792381 MS.gene056310:CDS
AGAGAAGTGCTAAGTGAATA+TGG 0.323095 7.3:-81792024 MS.gene056310:CDS
TATCAACTCACCAAACTCTT+AGG 0.335572 7.3:-81792582 MS.gene056310:CDS
TGCAGTGCCAATGGCCAAAA+TGG 0.341928 7.3:+81793300 None:intergenic
GCTTCGTTTGGCTAAAGATT+TGG 0.342769 7.3:-81792496 MS.gene056310:CDS
TCTACTTGATCTAGAATTGC+AGG 0.346751 7.3:+81792087 None:intergenic
CTTTGTTCAACACAATTTGC+TGG 0.349776 7.3:+81793274 None:intergenic
TCAATGGCTCCTTCACTATC+AGG 0.368167 7.3:+81792264 None:intergenic
TTGAAATTTCTCTTTGAGTT+CGG 0.376078 7.3:+81793204 None:intergenic
AAGTGAGTAATCTTTGACTT+TGG 0.381814 7.3:+81792648 None:intergenic
CACCTTCTTAAAGATGTTCC+TGG 0.385004 7.3:-81792210 MS.gene056310:CDS
GCCATATATTCACAAACATT+AGG 0.398680 7.3:+81792765 None:intergenic
GGAGCTGCTGCTCTTATTGT+TGG 0.402654 7.3:-81792354 MS.gene056310:CDS
GAGTTTGGTGAGTTGATAAT+CGG 0.404976 7.3:+81792587 None:intergenic
AGGTGGCACGGTGCTTCGTT+TGG 0.407834 7.3:-81792508 MS.gene056310:CDS
CACCTGCAAAACACCCTTGT+TGG 0.425276 7.3:+81792526 None:intergenic
ACTCACTTGGACAGCCTTGT+TGG 0.426712 7.3:-81792396 MS.gene056310:CDS
GGTTGAGGCTTTCGAGCCAT+TGG 0.428986 7.3:-81792157 MS.gene056310:CDS
CCAATGGCCAAAATGGTTGC+AGG 0.434445 7.3:+81793307 None:intergenic
GTCCAAACCATCTCAAATAT+AGG 0.437103 7.3:+81792303 None:intergenic
AACGGGAGAAGGACTTGAAT+GGG 0.444037 7.3:-81791926 MS.gene056310:CDS
AGGGAAGGAGGCTGCGGTGA+AGG 0.450562 7.3:-81792691 MS.gene056310:CDS
TGGGCGAAGACCTAAGAGTT+TGG 0.450749 7.3:+81792572 None:intergenic
GCGCAAAACAACCGTTTCAA+TGG 0.451768 7.3:+81791873 None:intergenic
ATCTAGAATTGCAGGTCCAC+CGG 0.463612 7.3:+81792095 None:intergenic
CTGAAATTCGTAAGGCTCAA+AGG 0.465090 7.3:-81793339 MS.gene056310:CDS
GCAAGACATGGTGGTGGTAG+AGG 0.466014 7.3:-81792724 MS.gene056310:CDS
CATGTATCTCCTCTTGATCA+TGG 0.469562 7.3:+81792818 None:intergenic
GTGGTAGAGGTGCCTAGGCT+AGG 0.470453 7.3:-81792711 MS.gene056310:CDS
TTCACGAAGGTGACCATCAA+TGG 0.471758 7.3:+81792248 None:intergenic
AAAGAACATTACTAAAGCAT+TGG 0.475145 7.3:-81792178 MS.gene056310:CDS
GTTGAGGCTTTCGAGCCATT+GGG 0.477937 7.3:-81792156 MS.gene056310:CDS
CTGTCCAAGTGAGTATCACT+AGG 0.483602 7.3:+81792405 None:intergenic
CGGTGAAGGCTATAAAAGAA+TGG 0.483789 7.3:-81792677 MS.gene056310:CDS
ACCTTCTTAAAGATGTTCCT+GGG 0.484500 7.3:-81792209 MS.gene056310:CDS
GATGGTCACCTTCGTGAAGC+TGG 0.486168 7.3:-81792243 MS.gene056310:CDS
GATAGTGAAGGAGCCATTGA+TGG 0.488582 7.3:-81792261 MS.gene056310:CDS
GTTTCTCAATTTCTGGTACT+GGG 0.492984 7.3:+81792325 None:intergenic
GTCACCGCTGTCACATTTCG+TGG 0.493936 7.3:-81792429 MS.gene056310:CDS
CAACGGGAGAAGGACTTGAA+TGG 0.504753 7.3:-81791927 MS.gene056310:CDS
GTCTTCGCCCATATGTGAAA+AGG 0.504788 7.3:-81792560 MS.gene056310:CDS
TGAGAAACCTATATTTGAGA+TGG 0.507221 7.3:-81792310 MS.gene056310:CDS
AAAGACGGATTGAAGACAAC+GGG 0.508808 7.3:-81791943 MS.gene056310:CDS
GGTGAAGGCTATAAAAGAAT+GGG 0.509368 7.3:-81792676 MS.gene056310:CDS
ACCAGGACTTACCATTGAAA+CGG 0.510913 7.3:-81791884 MS.gene056310:CDS
TGAAATTCGTAAGGCTCAAA+GGG 0.513791 7.3:-81793338 MS.gene056310:CDS
TAGGCTAGGGAAGGAGGCTG+CGG 0.515505 7.3:-81792697 MS.gene056310:CDS
GTGAGTTGATAATCGGCTCC+AGG 0.515720 7.3:+81792594 None:intergenic
TGGCACCTTCATTAGATGCT+AGG 0.523854 7.3:-81792746 MS.gene056310:CDS
ACCGTTTCAATGGTAAGTCC+TGG 0.536054 7.3:+81791883 None:intergenic
CATTACTAAAGCATTGGTTG+AGG 0.542552 7.3:-81792172 MS.gene056310:CDS
TCCCAGGAACATCTTTAAGA+AGG 0.550142 7.3:+81792208 None:intergenic
ATGTTCTTTGAAACAATCCC+AGG 0.550779 7.3:+81792192 None:intergenic
TGCTGGATTTGCAGTGCCAA+TGG 0.555118 7.3:+81793291 None:intergenic
GGACAAGCACTATTTGGAGA+TGG 0.563405 7.3:-81792375 MS.gene056310:CDS
TGGTAGAGGTGCCTAGGCTA+GGG 0.568521 7.3:-81792710 MS.gene056310:CDS
ACAAGTGGTGTAGACATGCC+TGG 0.569592 7.3:-81792612 MS.gene056310:CDS
AGAAAGAAATCAACTAAAGA+CGG 0.570835 7.3:-81791958 MS.gene056310:CDS
TCTAGAATTGCAGGTCCACC+GGG 0.570884 7.3:+81792096 None:intergenic
TGGTGGTGGTAGAGGTGCCT+AGG 0.572694 7.3:-81792716 MS.gene056310:CDS
CAAATAGTGCTTGTCCAACA+AGG 0.572762 7.3:+81792382 None:intergenic
GGATTGAAGACAACGGGAGA+AGG 0.579099 7.3:-81791937 MS.gene056310:CDS
GTGATAAATCCATGATCAAG+AGG 0.584564 7.3:-81792827 MS.gene056310:CDS
GCAGCCTCCTTCCCTAGCCT+AGG 0.585121 7.3:+81792699 None:intergenic
TCTTGCCTAGCATCTAATGA+AGG 0.587072 7.3:+81792741 None:intergenic
TTAATCGTTTGCACTACAAG+TGG 0.590788 7.3:-81792627 MS.gene056310:CDS
GGTGCCTAGGCTAGGGAAGG+AGG 0.591536 7.3:-81792703 MS.gene056310:CDS
TGTGTTGGTTGTTTGTTCTG+AGG 0.596318 7.3:-81792451 MS.gene056310:CDS
CGTAAGGCTCAAAGGGCAGA+AGG 0.600732 7.3:-81793331 MS.gene056310:CDS
TGGCCCTAGTGATACTCACT+TGG 0.605912 7.3:-81792409 MS.gene056310:CDS
CAACAAAGGTGCTCGTGTGT+TGG 0.620198 7.3:-81792466 MS.gene056310:CDS
TGCTAGGCAAGACATGGTGG+TGG 0.628985 7.3:-81792730 MS.gene056310:CDS
GAGTGTGTCTGAAATTCGTA+AGG 0.636969 7.3:-81793347 MS.gene056310:CDS
AGAGGTGCCTAGGCTAGGGA+AGG 0.638915 7.3:-81792706 MS.gene056310:CDS
ACAATTGCTCCTGATAGTGA+AGG 0.642382 7.3:-81792273 MS.gene056310:CDS
ATTAGATGCTAGGCAAGACA+TGG 0.648961 7.3:-81792736 MS.gene056310:CDS
GGTACATGATGTACCAACAA+GGG 0.652620 7.3:-81792539 MS.gene056310:CDS
TTGTAATCAGAAATTCCCAA+TGG 0.673208 7.3:+81792141 None:intergenic
TGTCCAAGTGAGTATCACTA+GGG 0.674277 7.3:+81792406 None:intergenic
AGGTACATGATGTACCAACA+AGG 0.675679 7.3:-81792540 MS.gene056310:CDS
TAAAGACGGATTGAAGACAA+CGG 0.676404 7.3:-81791944 MS.gene056310:CDS
GATTTGGCTGAGAACAACAA+AGG 0.683242 7.3:-81792480 MS.gene056310:CDS
AGATGCTAGGCAAGACATGG+TGG 0.685874 7.3:-81792733 MS.gene056310:CDS
ATGTTAGTCCAGCTTCACGA+AGG 0.698828 7.3:+81792235 None:intergenic
GTGAAGGCTATAAAAGAATG+GGG 0.700932 7.3:-81792675 MS.gene056310:CDS
ACGGGAGAAGGACTTGAATG+GGG 0.714424 7.3:-81791925 MS.gene056310:CDS
AGGGCCACGAAATGTGACAG+CGG 0.772653 7.3:+81792425 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACAATCAAATAATAAT+TGG + chr7.3:81792319-81792338 None:intergenic 10.0%
!! AAGAATAAATATATTTGAAA+TGG + chr7.3:81792149-81792168 None:intergenic 10.0%
!! TGTTTAAATTACTTAAAATA+CGG - chr7.3:81792184-81792203 MS.gene056310:CDS 10.0%
!!! AATTATTATTTGATTGTTTT+TGG - chr7.3:81792318-81792337 MS.gene056310:CDS 10.0%
!!! TATTTTAAGTAATTTAAACA+TGG + chr7.3:81792184-81792203 None:intergenic 10.0%
!!! GTAATTTTAAAGTAAAAATC+AGG + chr7.3:81791969-81791988 None:intergenic 15.0%
!!! TCACTTTAAAAATAATATAG+AGG + chr7.3:81792053-81792072 None:intergenic 15.0%
!! ACAAATAATGTGTATCAATT+TGG + chr7.3:81792259-81792278 None:intergenic 20.0%
!!! TTTTCTTTCATTTTGTGAAT+TGG - chr7.3:81792111-81792130 MS.gene056310:CDS 20.0%
! AAAGAACATTACTAAAGCAT+TGG - chr7.3:81793032-81793051 MS.gene056310:intron 25.0%
! AATATAGGTTTCTCAATTTC+TGG + chr7.3:81792895-81792914 None:intergenic 25.0%
! AGAAAGAAATCAACTAAAGA+CGG - chr7.3:81793252-81793271 MS.gene056310:CDS 25.0%
! ATAATGTGTATCAATTTGGT+AGG + chr7.3:81792255-81792274 None:intergenic 25.0%
! TCATTTCTTATAACTACTTC+AGG - chr7.3:81792361-81792380 MS.gene056310:CDS 25.0%
! TCCTAATGTTTGTGAATATA+TGG - chr7.3:81792444-81792463 MS.gene056310:CDS 25.0%
!! TAATTTAAACATGGTGATGA+TGG + chr7.3:81792175-81792194 None:intergenic 25.0%
!! TTGAAATTTCTCTTTGAGTT+CGG + chr7.3:81792009-81792028 None:intergenic 25.0%
!! TTTTGTGAATTGGACTAATT+AGG - chr7.3:81792121-81792140 MS.gene056310:CDS 25.0%
GCCATATATTCACAAACATT+AGG + chr7.3:81792448-81792467 None:intergenic 30.0%
GGCAATATTAATATCATGAG+TGG + chr7.3:81792234-81792253 None:intergenic 30.0%
TGAGAAACCTATATTTGAGA+TGG - chr7.3:81792900-81792919 MS.gene056310:intron 30.0%
TTGTAATCAGAAATTCCCAA+TGG + chr7.3:81793072-81793091 None:intergenic 30.0%
! AACCTATATTTGAGATGGTT+TGG - chr7.3:81792905-81792924 MS.gene056310:intron 30.0%
! AAGTGAGTAATCTTTGACTT+TGG + chr7.3:81792565-81792584 None:intergenic 30.0%
! ATCATGTACCTTTTCACATA+TGG + chr7.3:81792661-81792680 None:intergenic 30.0%
! CTGATTACAACTCAATCTTT+TGG - chr7.3:81793082-81793101 MS.gene056310:intron 30.0%
! TCATGTACCTTTTCACATAT+GGG + chr7.3:81792660-81792679 None:intergenic 30.0%
!! ATTCATCTTTTCAGGCTTTA+AGG + chr7.3:81793160-81793179 None:intergenic 30.0%
ACCTTCTTAAAGATGTTCCT+GGG - chr7.3:81793001-81793020 MS.gene056310:intron 35.0%
CTTGAATGGGGTGTATTATT+TGG - chr7.3:81793297-81793316 MS.gene056310:CDS 35.0%
CTTTGTTCAACACAATTTGC+TGG + chr7.3:81791939-81791958 None:intergenic 35.0%
GGTGAAGGCTATAAAAGAAT+GGG - chr7.3:81792534-81792553 MS.gene056310:CDS 35.0%
GTCCAAACCATCTCAAATAT+AGG + chr7.3:81792910-81792929 None:intergenic 35.0%
GTGAAGGCTATAAAAGAATG+GGG - chr7.3:81792535-81792554 MS.gene056310:CDS 35.0%
GTGATAAATCCATGATCAAG+AGG - chr7.3:81792383-81792402 MS.gene056310:CDS 35.0%
TATCAACTCACCAAACTCTT+AGG - chr7.3:81792628-81792647 MS.gene056310:CDS 35.0%
TGAAATTCGTAAGGCTCAAA+GGG - chr7.3:81791872-81791891 MS.gene056310:CDS 35.0%
TTAATCGTTTGCACTACAAG+TGG - chr7.3:81792583-81792602 MS.gene056310:CDS 35.0%
! CTAGTTGCATTCATCTTTTC+AGG + chr7.3:81793168-81793187 None:intergenic 35.0%
! TCTACTTGATCTAGAATTGC+AGG + chr7.3:81793126-81793145 None:intergenic 35.0%
!! AGAGAAGTGCTAAGTGAATA+TGG - chr7.3:81793186-81793205 MS.gene056310:intron 35.0%
!! ATGTTCTTTGAAACAATCCC+AGG + chr7.3:81793021-81793040 None:intergenic 35.0%
!! CATTACTAAAGCATTGGTTG+AGG - chr7.3:81793038-81793057 MS.gene056310:intron 35.0%
!! GAGTTTGGTGAGTTGATAAT+CGG + chr7.3:81792626-81792645 None:intergenic 35.0%
!! GTTTCTCAATTTCTGGTACT+GGG + chr7.3:81792888-81792907 None:intergenic 35.0%
!! TAAAGACGGATTGAAGACAA+CGG - chr7.3:81793266-81793285 MS.gene056310:CDS 35.0%
!! TGGGGTGTATTATTTGGTTT+TGG - chr7.3:81793303-81793322 MS.gene056310:CDS 35.0%
!!! GTATTATTTGGTTTTGGACC+AGG - chr7.3:81793309-81793328 MS.gene056310:CDS 35.0%
ACCAGGACTTACCATTGAAA+CGG - chr7.3:81793326-81793345 MS.gene056310:CDS 40.0%
AGGTACATGATGTACCAACA+AGG - chr7.3:81792670-81792689 MS.gene056310:CDS 40.0%
ATTAGATGCTAGGCAAGACA+TGG - chr7.3:81792474-81792493 MS.gene056310:CDS 40.0%
CAAATAGTGCTTGTCCAACA+AGG + chr7.3:81792831-81792850 None:intergenic 40.0%
CACCTTCTTAAAGATGTTCC+TGG - chr7.3:81793000-81793019 MS.gene056310:intron 40.0%
CATGTATCTCCTCTTGATCA+TGG + chr7.3:81792395-81792414 None:intergenic 40.0%
CGGTGAAGGCTATAAAAGAA+TGG - chr7.3:81792533-81792552 MS.gene056310:CDS 40.0%
CTGAAATTCGTAAGGCTCAA+AGG - chr7.3:81791871-81791890 MS.gene056310:CDS 40.0%
CTTGTTGGACAAGCACTATT+TGG - chr7.3:81792829-81792848 MS.gene056310:CDS 40.0%
GATTTGGCTGAGAACAACAA+AGG - chr7.3:81792730-81792749 MS.gene056310:CDS 40.0%
GCTTCGTTTGGCTAAAGATT+TGG - chr7.3:81792714-81792733 MS.gene056310:CDS 40.0%
GGTACATGATGTACCAACAA+GGG - chr7.3:81792671-81792690 MS.gene056310:CDS 40.0%
TCTTGCCTAGCATCTAATGA+AGG + chr7.3:81792472-81792491 None:intergenic 40.0%
TGTCCAAGTGAGTATCACTA+GGG + chr7.3:81792807-81792826 None:intergenic 40.0%
! ACAATTGCTCCTGATAGTGA+AGG - chr7.3:81792937-81792956 MS.gene056310:intron 40.0%
! ATCTTTTGGATTGCACATCC+CGG - chr7.3:81793096-81793115 MS.gene056310:intron 40.0%
! GAGTGTGTCTGAAATTCGTA+AGG - chr7.3:81791863-81791882 MS.gene056310:CDS 40.0%
! TCCCAGGAACATCTTTAAGA+AGG + chr7.3:81793005-81793024 None:intergenic 40.0%
!! AAAGACGGATTGAAGACAAC+GGG - chr7.3:81793267-81793286 MS.gene056310:CDS 40.0%
!! GGTTTCTCAATTTCTGGTAC+TGG + chr7.3:81792889-81792908 None:intergenic 40.0%
!! TGTGTTGGTTGTTTGTTCTG+AGG - chr7.3:81792759-81792778 MS.gene056310:CDS 40.0%
AACGGGAGAAGGACTTGAAT+GGG - chr7.3:81793284-81793303 MS.gene056310:CDS 45.0%
ACCGTTTCAATGGTAAGTCC+TGG + chr7.3:81793330-81793349 None:intergenic 45.0%
ATGTTAGTCCAGCTTCACGA+AGG + chr7.3:81792978-81792997 None:intergenic 45.0%
CTGTCCAAGTGAGTATCACT+AGG + chr7.3:81792808-81792827 None:intergenic 45.0%
GATAGTGAAGGAGCCATTGA+TGG - chr7.3:81792949-81792968 MS.gene056310:intron 45.0%
GCGCAAAACAACCGTTTCAA+TGG + chr7.3:81793340-81793359 None:intergenic 45.0%
GGACAAGCACTATTTGGAGA+TGG - chr7.3:81792835-81792854 MS.gene056310:intron 45.0%
GTCTTCGCCCATATGTGAAA+AGG - chr7.3:81792650-81792669 MS.gene056310:CDS 45.0%
TCAATGGCTCCTTCACTATC+AGG + chr7.3:81792949-81792968 None:intergenic 45.0%
TGGCACCTTCATTAGATGCT+AGG - chr7.3:81792464-81792483 MS.gene056310:CDS 45.0%
TTCACGAAGGTGACCATCAA+TGG + chr7.3:81792965-81792984 None:intergenic 45.0%
! AGAAGGTCCTGCAACCATTT+TGG - chr7.3:81791896-81791915 MS.gene056310:CDS 45.0%
! ATCTAGAATTGCAGGTCCAC+CGG + chr7.3:81793118-81793137 None:intergenic 45.0%
!!! TACCAACAAGGGTGTTTTGC+AGG - chr7.3:81792682-81792701 MS.gene056310:CDS 45.0%
ACAAGTGGTGTAGACATGCC+TGG - chr7.3:81792598-81792617 MS.gene056310:CDS 50.0%
ACGGGAGAAGGACTTGAATG+GGG - chr7.3:81793285-81793304 MS.gene056310:CDS 50.0%
AGATGCTAGGCAAGACATGG+TGG - chr7.3:81792477-81792496 MS.gene056310:CDS 50.0%
CAACGGGAGAAGGACTTGAA+TGG - chr7.3:81793283-81793302 MS.gene056310:CDS 50.0%
CACCTGCAAAACACCCTTGT+TGG + chr7.3:81792687-81792706 None:intergenic 50.0%
CCAATGGCCAAAATGGTTGC+AGG + chr7.3:81791906-81791925 None:intergenic 50.0%
GGAGCTGCTGCTCTTATTGT+TGG - chr7.3:81792856-81792875 MS.gene056310:intron 50.0%
GGATTGAAGACAACGGGAGA+AGG - chr7.3:81793273-81793292 MS.gene056310:CDS 50.0%
GTTGAGGCTTTCGAGCCATT+GGG - chr7.3:81793054-81793073 MS.gene056310:intron 50.0%
TGCAGTGCCAATGGCCAAAA+TGG + chr7.3:81791913-81791932 None:intergenic 50.0%
TGCTGGATTTGCAGTGCCAA+TGG + chr7.3:81791922-81791941 None:intergenic 50.0%
TGGCCCTAGTGATACTCACT+TGG - chr7.3:81792801-81792820 MS.gene056310:CDS 50.0%
TGGGCGAAGACCTAAGAGTT+TGG + chr7.3:81792641-81792660 None:intergenic 50.0%
! ACTCACTTGGACAGCCTTGT+TGG - chr7.3:81792814-81792833 MS.gene056310:CDS 50.0%
! TCTAGAATTGCAGGTCCACC+GGG + chr7.3:81793117-81793136 None:intergenic 50.0%
! TTTTGGATTGCACATCCCGG+TGG - chr7.3:81793099-81793118 MS.gene056310:intron 50.0%
!! CAACAAAGGTGCTCGTGTGT+TGG - chr7.3:81792744-81792763 MS.gene056310:CDS 50.0%
!! CCTGCAACCATTTTGGCCAT+TGG - chr7.3:81791903-81791922 MS.gene056310:CDS 50.0%
!! GTGAGTTGATAATCGGCTCC+AGG + chr7.3:81792619-81792638 None:intergenic 50.0%
!!! CAACAAGGGTGTTTTGCAGG+TGG - chr7.3:81792685-81792704 MS.gene056310:CDS 50.0%
AGGGCCACGAAATGTGACAG+CGG + chr7.3:81792788-81792807 None:intergenic 55.0%
CGTAAGGCTCAAAGGGCAGA+AGG - chr7.3:81791879-81791898 MS.gene056310:CDS 55.0%
GATGGTCACCTTCGTGAAGC+TGG - chr7.3:81792967-81792986 MS.gene056310:intron 55.0%
GGTTGAGGCTTTCGAGCCAT+TGG - chr7.3:81793053-81793072 MS.gene056310:intron 55.0%
GTCACCGCTGTCACATTTCG+TGG - chr7.3:81792781-81792800 MS.gene056310:CDS 55.0%
TGCTAGGCAAGACATGGTGG+TGG - chr7.3:81792480-81792499 MS.gene056310:CDS 55.0%
!! AACGGTTGTTTTGCGCAGCG+TGG - chr7.3:81793344-81793363 MS.gene056310:CDS 55.0%
!! AGGGTGTTTTGCAGGTGGCA+CGG - chr7.3:81792690-81792709 MS.gene056310:CDS 55.0%
!! GCAAGACATGGTGGTGGTAG+AGG - chr7.3:81792486-81792505 MS.gene056310:CDS 55.0%
!! TGGTAGAGGTGCCTAGGCTA+GGG - chr7.3:81792500-81792519 MS.gene056310:CDS 55.0%
AGGTGGCACGGTGCTTCGTT+TGG - chr7.3:81792702-81792721 MS.gene056310:CDS 60.0%
TAGGCTAGGGAAGGAGGCTG+CGG - chr7.3:81792513-81792532 MS.gene056310:CDS 60.0%
!! AGAGGTGCCTAGGCTAGGGA+AGG - chr7.3:81792504-81792523 MS.gene056310:CDS 60.0%
!! GTGGTAGAGGTGCCTAGGCT+AGG - chr7.3:81792499-81792518 MS.gene056310:CDS 60.0%
!! TGGTGGTGGTAGAGGTGCCT+AGG - chr7.3:81792494-81792513 MS.gene056310:CDS 60.0%
AGGGAAGGAGGCTGCGGTGA+AGG - chr7.3:81792519-81792538 MS.gene056310:CDS 65.0%
GCAGCCTCCTTCCCTAGCCT+AGG + chr7.3:81792514-81792533 None:intergenic 65.0%
GGTGCCTAGGCTAGGGAAGG+AGG - chr7.3:81792507-81792526 MS.gene056310:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 81791858 81793374 81791858 ID=MS.gene056310
chr7.3 mRNA 81791858 81793374 81791858 ID=MS.gene056310.t1;Parent=MS.gene056310
chr7.3 exon 81793197 81793374 81793197 ID=MS.gene056310.t1.exon1;Parent=MS.gene056310.t1
chr7.3 CDS 81793197 81793374 81793197 ID=cds.MS.gene056310.t1;Parent=MS.gene056310.t1
chr7.3 exon 81791858 81792849 81791858 ID=MS.gene056310.t1.exon2;Parent=MS.gene056310.t1
chr7.3 CDS 81791858 81792849 81791858 ID=cds.MS.gene056310.t1;Parent=MS.gene056310.t1
Gene Sequence

>MS.gene056310

ATGGTGAGTGTGTCTGAAATTCGTAAGGCTCAAAGGGCAGAAGGTCCTGCAACCATTTTGGCCATTGGCACTGCAAATCCAGCAAATTGTGTTGAACAAAGCACTTATCCTGATTTTTACTTTAAAATTACAAATAGTGAGCACAAAACCGAACTCAAAGAGAAATTTCAACGCATGTGTAAGTATTCTTTACCTCTATATTATTTTTAAAGTGAAAAAACTTACTTATTTACATTTATTTCTCTAGTGTTTTTTTTCTTTCATTTTGTGAATTGGACTAATTAGGTTCCATTTCAAATATATTTATTCTTGATCCATCATCACCATGTTTAAATTACTTAAAATACGGTAGAAATGTCTTTATTTTTAGCAACCACTCATGATATTAATATTGCCTACCAAATTGATACACATTATTTGTATTAAGAAAAGAATTATTTTATTGTCAAAAAAAGAGACCAATTATTATTTGATTGTTTTTGGTATTATTCTAAAATTGTTTGTCATTTCTTATAACTACTTCAGGTGATAAATCCATGATCAAGAGGAGATACATGTATCTAACAGAAGAGATTTTGAAAGAAAATCCTAATGTTTGTGAATATATGGCACCTTCATTAGATGCTAGGCAAGACATGGTGGTGGTAGAGGTGCCTAGGCTAGGGAAGGAGGCTGCGGTGAAGGCTATAAAAGAATGGGGTCAACCAAAGTCAAAGATTACTCACTTAATCGTTTGCACTACAAGTGGTGTAGACATGCCTGGAGCCGATTATCAACTCACCAAACTCTTAGGTCTTCGCCCATATGTGAAAAGGTACATGATGTACCAACAAGGGTGTTTTGCAGGTGGCACGGTGCTTCGTTTGGCTAAAGATTTGGCTGAGAACAACAAAGGTGCTCGTGTGTTGGTTGTTTGTTCTGAGGTCACCGCTGTCACATTTCGTGGCCCTAGTGATACTCACTTGGACAGCCTTGTTGGACAAGCACTATTTGGAGATGGAGCTGCTGCTCTTATTGTTGGCTCTGACCCAGTACCAGAAATTGAGAAACCTATATTTGAGATGGTTTGGACTGCACAAACAATTGCTCCTGATAGTGAAGGAGCCATTGATGGTCACCTTCGTGAAGCTGGACTAACATTTCACCTTCTTAAAGATGTTCCTGGGATTGTTTCAAAGAACATTACTAAAGCATTGGTTGAGGCTTTCGAGCCATTGGGAATTTCTGATTACAACTCAATCTTTTGGATTGCACATCCCGGTGGACCTGCAATTCTAGATCAAGTAGAGCAAAAGTTAGCCTTAAAGCCTGAAAAGATGAATGCAACTAGAGAAGTGCTAAGTGAATATGGAAATATGTCAAGTGCATGTGTTTTGTTTATCTTAGATGAAATGAGAAAGAAATCAACTAAAGACGGATTGAAGACAACGGGAGAAGGACTTGAATGGGGTGTATTATTTGGTTTTGGACCAGGACTTACCATTGAAACGGTTGTTTTGCGCAGCGTGGCTATATGA

Protein sequence

>MS.gene056310.t1

MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTKDGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVAI