AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene40808

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40808.t1 MTR_1g083780 94.348 230 2 1 1 230 1 219 1.78e-159 440
MS.gene40808.t1 MTR_2g035070 53.271 214 87 7 24 230 20 227 1.33e-63 197
MS.gene40808.t1 MTR_7g112403 74.797 123 29 1 110 230 1 123 2.61e-55 173
MS.gene40808.t1 MTR_7g112400 65.833 120 24 4 1 103 1 120 1.58e-46 151
MS.gene40808.t1 MTR_7g109145 33.937 221 110 3 14 230 5 193 3.70e-29 108
MS.gene40808.t1 MTR_7g109145 40.000 160 79 3 75 230 3 149 5.77e-24 93.6
MS.gene40808.t1 MTR_4g088430 31.381 239 109 8 7 228 6 206 4.08e-20 85.1
MS.gene40808.t1 MTR_7g109145 38.312 154 78 3 81 230 1 141 2.34e-18 79.0
MS.gene40808.t1 MTR_4g104770 30.256 195 106 7 36 229 35 200 2.60e-14 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40808.t1 AT3G05700 59.227 233 82 3 1 230 1 223 4.13e-91 267
MS.gene40808.t1 AT5G26990 53.879 232 95 3 1 230 1 222 4.84e-82 244
MS.gene40808.t1 AT3G05700 61.307 199 64 3 1 196 1 189 3.09e-80 239
MS.gene40808.t1 AT1G56280 51.142 219 86 4 11 228 1 199 5.14e-67 205
MS.gene40808.t1 AT1G56280 51.724 203 76 5 27 228 24 205 2.68e-59 186
MS.gene40808.t1 AT5G49230 48.020 202 86 5 27 228 27 209 1.25e-57 182
MS.gene40808.t1 AT3G06760 49.519 208 91 4 27 230 27 224 2.41e-56 179
MS.gene40808.t1 AT5G49230 46.535 202 84 5 27 228 27 204 2.02e-53 171
MS.gene40808.t1 AT3G06760 44.762 210 108 5 27 230 27 234 2.12e-37 130
MS.gene40808.t1 AT1G02750 33.023 215 122 4 19 229 20 216 1.66e-28 107
MS.gene40808.t1 AT4G02200 35.678 199 102 5 34 227 32 209 8.65e-28 105
MS.gene40808.t1 AT4G02200 33.333 213 102 6 34 227 32 223 7.34e-24 95.5
MS.gene40808.t1 AT4G02200 34.031 191 100 5 34 219 32 201 2.30e-23 94.0
MS.gene40808.t1 AT1G02750 30.233 215 112 4 19 229 20 200 2.82e-21 88.2

Find 51 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATATGTAGATATGTTTA+TGG 0.158593 1.2:+59680019 MS.gene40808:intron
AACCTCATCTGATAATTTCT+TGG 0.251118 1.2:-59680972 None:intergenic
TACATGGAGATCCGCCAAAA+AGG 0.298414 1.2:-59680838 None:intergenic
TCGTCATTTATATCACCTTT+AGG 0.299231 1.2:+59680899 MS.gene40808:CDS
TCAAAATACTCAGAACAAAA+TGG 0.307531 1.2:-59680092 None:intergenic
ACGACGCGGATGAAGATATA+AGG 0.313415 1.2:+59680054 MS.gene40808:CDS
TAAATATACTTCCATGTTGT+AGG 0.329218 1.2:-59680496 None:intergenic
CAGATGAGGTTGTATCAAAA+AGG 0.348269 1.2:+59680984 MS.gene40808:CDS
TCATATGTAGATATGTTTAT+GGG 0.364564 1.2:+59680020 MS.gene40808:intron
CCCACCCTCAATGCACAAAC+TGG 0.369022 1.2:-59680449 None:intergenic
CAGTTTGTGCATTGAGGGTG+GGG 0.399469 1.2:+59680450 MS.gene40808:CDS
AAAAGATGTGAGTTTGTTCA+AGG 0.426089 1.2:+59681803 MS.gene40808:CDS
AATGACGACAGCAGCGGATC+AGG 0.429498 1.2:-59680884 None:intergenic
CCAGTTTGTGCATTGAGGGT+GGG 0.436557 1.2:+59680449 MS.gene40808:CDS
GACACCAACCATGTCAGTTA+AGG 0.447358 1.2:+59681763 MS.gene40808:CDS
ATTCTACACTTTCATTATTG+AGG 0.450122 1.2:+59680786 MS.gene40808:CDS
CTCCTTGTCCTTAACTGACA+TGG 0.453146 1.2:-59681771 None:intergenic
TCCAGTTTGTGCATTGAGGG+TGG 0.471839 1.2:+59680448 MS.gene40808:CDS
ATGTCCAGTTTGTGCATTGA+GGG 0.478451 1.2:+59680445 MS.gene40808:CDS
AAATATACTTCCATGTTGTA+GGG 0.478691 1.2:-59680495 None:intergenic
CGACGCGGATGAAGATATAA+GGG 0.493789 1.2:+59680055 MS.gene40808:CDS
TACACTTTCATTATTGAGGA+AGG 0.495459 1.2:+59680790 MS.gene40808:CDS
GCCGCTCTTCAATCCCGATC+AGG 0.499368 1.2:+59679329 MS.gene40808:CDS
GAAGAAGAAGGAACCTGATC+GGG 0.499752 1.2:-59679342 None:intergenic
AAGAGCGGCTTGATAACGTC+TGG 0.519588 1.2:-59679315 None:intergenic
TTGAGGAAGGAGCTGAGAGA+AGG 0.522683 1.2:+59680803 MS.gene40808:CDS
TCATGGACGGTGATTCCTCT+TGG 0.522705 1.2:+59679270 None:intergenic
AGTTTGTGCATTGAGGGTGG+GGG 0.526173 1.2:+59680451 MS.gene40808:CDS
GAGAATACATGCAGCGCAAG+AGG 0.529554 1.2:+59680741 MS.gene40808:intron
AGAAGAAGAAGGAACCTGAT+CGG 0.544190 1.2:-59679343 None:intergenic
CTCGCAGATTCATTACCTAA+AGG 0.546009 1.2:-59680914 None:intergenic
ACATGGTTGGTGTCTCTACA+TGG 0.547882 1.2:-59681754 None:intergenic
TAAATCGTCATCAAATATTG+TGG 0.557897 1.2:-59681837 None:intergenic
ATCCAAGAAATTATCAGATG+AGG 0.560831 1.2:+59680970 MS.gene40808:CDS
TATGTCCAGTTTGTGCATTG+AGG 0.571210 1.2:+59680444 MS.gene40808:CDS
GGCTTGATAACGTCTGGAAG+CGG 0.576629 1.2:-59679309 None:intergenic
CGCAAGAGGAAATCACGTAA+AGG 0.589197 1.2:+59680755 MS.gene40808:CDS
TTGTCCTTAACTGACATGGT+TGG 0.595748 1.2:-59681767 None:intergenic
TTGGGTGTTCTTCATCAATG+TGG 0.616285 1.2:-59680133 None:intergenic
CATTGATGAAGAACACCCAA+TGG 0.620331 1.2:+59680136 MS.gene40808:CDS
TTAGACGAGGACACTATACA+TGG 0.625691 1.2:-59680854 None:intergenic
AAGAGGAAATCACGTAAAGG+TGG 0.657544 1.2:+59680758 MS.gene40808:CDS
ACCTGATCGGGATTGAAGAG+CGG 0.658265 1.2:-59679330 None:intergenic
AGAGAGACGAGAAGACCAAG+AGG 0.660889 1.2:-59679285 None:intergenic
TTTCAGATCACAATCATGGA+CGG 0.662516 1.2:+59679257 None:intergenic
GATATAAATGACGACAGCAG+CGG 0.665482 1.2:-59680890 None:intergenic
TGATGAAGAACACCCAATGG+AGG 0.674724 1.2:+59680139 MS.gene40808:CDS
AACCATGTCAGTTAAGGACA+AGG 0.681006 1.2:+59681769 MS.gene40808:CDS
ATCAGGTGCTGCATTAGACG+AGG 0.688052 1.2:-59680867 None:intergenic
CATGTCAGTTAAGGACAAGG+AGG 0.702100 1.2:+59681772 MS.gene40808:CDS
GCTCACATAACCCTACAACA+TGG 0.721119 1.2:+59680485 MS.gene40808:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAGAATTATATATGTAAT+CGG + chr1.2:59679622-59679641 MS.gene40808:intron 10.0%
!!! TTCAATTTTAGATTAATTTT+TGG - chr1.2:59679503-59679522 None:intergenic 10.0%
!! CAATCAATAATAAGATAAAA+AGG + chr1.2:59680670-59680689 MS.gene40808:intron 15.0%
!! TACATACAAAGTAAATAAAA+TGG - chr1.2:59681561-59681580 None:intergenic 15.0%
!! TGTAAAAATCATTTAAGAAT+TGG - chr1.2:59680562-59680581 None:intergenic 15.0%
!!! TATGAAGTTTACTTATTTTA+AGG + chr1.2:59680646-59680665 MS.gene40808:intron 15.0%
!!! TTTCATAAATTTTCTAAGAT+AGG - chr1.2:59679854-59679873 None:intergenic 15.0%
!! AACATTTCTTCAAACTTAAA+TGG + chr1.2:59681330-59681349 MS.gene40808:intron 20.0%
!! AACTGAATTGATATATGATA+TGG + chr1.2:59681040-59681059 MS.gene40808:intron 20.0%
!! ATATGAAATGTTCAAGAAAT+TGG + chr1.2:59681111-59681130 MS.gene40808:intron 20.0%
!! ATGTTTATGATAGAACATTA+TGG + chr1.2:59681441-59681460 MS.gene40808:intron 20.0%
!! TATCATATATCAATTCAGTT+AGG - chr1.2:59681040-59681059 None:intergenic 20.0%
!! TCATATGTAGATATGTTTAT+GGG + chr1.2:59680020-59680039 MS.gene40808:intron 20.0%
!! TTCATATGTAGATATGTTTA+TGG + chr1.2:59680019-59680038 MS.gene40808:intron 20.0%
! AAACAGGGAAATATATGTAT+AGG - chr1.2:59680293-59680312 None:intergenic 25.0%
! AAATACTTGCACATAAACAT+AGG - chr1.2:59679978-59679997 None:intergenic 25.0%
! AAATATACTTCCATGTTGTA+GGG - chr1.2:59680498-59680517 None:intergenic 25.0%
! AACAATTTAAATTCCACTGA+TGG - chr1.2:59679682-59679701 None:intergenic 25.0%
! ACAATATTTAGTATTCTCAC+AGG - chr1.2:59681083-59681102 None:intergenic 25.0%
! ATTAAGCTGTTTATTCCAAA+AGG - chr1.2:59679762-59679781 None:intergenic 25.0%
! ATTCTACACTTTCATTATTG+AGG + chr1.2:59680786-59680805 MS.gene40808:CDS 25.0%
! TAAATATACTTCCATGTTGT+AGG - chr1.2:59680499-59680518 None:intergenic 25.0%
! TAAATCGTCATCAAATATTG+TGG - chr1.2:59681840-59681859 None:intergenic 25.0%
! TCAAAATACTCAGAACAAAA+TGG - chr1.2:59680095-59680114 None:intergenic 25.0%
! TCACCTATATGAAATAAACA+GGG - chr1.2:59680308-59680327 None:intergenic 25.0%
! TCAGTGGAATTTAAATTGTT+TGG + chr1.2:59679682-59679701 MS.gene40808:intron 25.0%
! TTAAGCTGTTTATTCCAAAA+GGG - chr1.2:59679761-59679780 None:intergenic 25.0%
! TTATATATGTAATCGGCAAT+TGG + chr1.2:59679629-59679648 MS.gene40808:intron 25.0%
! TTATCTGTGAATTTAGTTAC+AGG + chr1.2:59681415-59681434 MS.gene40808:intron 25.0%
! TTCACCTATATGAAATAAAC+AGG - chr1.2:59680309-59680328 None:intergenic 25.0%
! TTTCCAATAACATTACACAA+TGG + chr1.2:59681680-59681699 MS.gene40808:intron 25.0%
! TTTCCCTGTTTATTTCATAT+AGG + chr1.2:59680302-59680321 MS.gene40808:intron 25.0%
!!! TCTGAGTATTTTGATATTGT+TGG + chr1.2:59680101-59680120 MS.gene40808:CDS 25.0%
AAATGGTCAATTGAATAAGC+TGG - chr1.2:59681544-59681563 None:intergenic 30.0%
AACCTCATCTGATAATTTCT+TGG - chr1.2:59680975-59680994 None:intergenic 30.0%
ACATAAACATAGGAGTAAAG+AGG - chr1.2:59679968-59679987 None:intergenic 30.0%
ACTAAATTGATTGATCGTTC+AGG - chr1.2:59681618-59681637 None:intergenic 30.0%
AGCTATAGAGAGAAAGAAAT+TGG - chr1.2:59679387-59679406 None:intergenic 30.0%
AGGAATGAACAAAAGCTTTA+CGG - chr1.2:59680273-59680292 None:intergenic 30.0%
ATATAGATACTAGCTCAGTT+AGG + chr1.2:59679438-59679457 MS.gene40808:intron 30.0%
ATCCAAGAAATTATCAGATG+AGG + chr1.2:59680970-59680989 MS.gene40808:CDS 30.0%
ATGCCATTGTGTAATGTTAT+TGG - chr1.2:59681686-59681705 None:intergenic 30.0%
CTATAGAGAGAAAGAAATTG+GGG - chr1.2:59679385-59679404 None:intergenic 30.0%
CTCAAATAAGTCAATCCTAA+CGG + chr1.2:59679928-59679947 MS.gene40808:intron 30.0%
GAAATGTTCAAGAAATTGGT+AGG + chr1.2:59681115-59681134 MS.gene40808:intron 30.0%
GAGCTAGTATCTATATGTAA+AGG - chr1.2:59679434-59679453 None:intergenic 30.0%
GCTATAGAGAGAAAGAAATT+GGG - chr1.2:59679386-59679405 None:intergenic 30.0%
TACACTTTCATTATTGAGGA+AGG + chr1.2:59680790-59680809 MS.gene40808:CDS 30.0%
TATAGAGAGAAAGAAATTGG+GGG - chr1.2:59679384-59679403 None:intergenic 30.0%
TATAGATACTAGCTCAGTTA+GGG + chr1.2:59679439-59679458 MS.gene40808:intron 30.0%
TATTTGTGGTTATTGATGTG+AGG + chr1.2:59679993-59680012 MS.gene40808:intron 30.0%
TCAAATAAGTCAATCCTAAC+GGG + chr1.2:59679929-59679948 MS.gene40808:intron 30.0%
TCGTCATTTATATCACCTTT+AGG + chr1.2:59680899-59680918 MS.gene40808:CDS 30.0%
TGTTTATGTGCAAGTATTTG+TGG + chr1.2:59679979-59679998 MS.gene40808:intron 30.0%
TTATTCCAAAAGGGTTTAAG+TGG - chr1.2:59679752-59679771 None:intergenic 30.0%
! AAAAGATGTGAGTTTGTTCA+AGG + chr1.2:59681803-59681822 MS.gene40808:CDS 30.0%
! ACAGTGAAATAAAGCTTTTC+AGG - chr1.2:59681226-59681245 None:intergenic 30.0%
! AGAACTTGGTGAGAAAAAAA+AGG - chr1.2:59680528-59680547 None:intergenic 30.0%
! ATTATGACATTTTTGTGTGC+AGG + chr1.2:59680421-59680440 MS.gene40808:intron 30.0%
! CTTACAAGGTTTTCAGTATT+GGG + chr1.2:59680219-59680238 MS.gene40808:intron 30.0%
! TTTTCTCACCAAGTTCTATT+CGG + chr1.2:59680531-59680550 MS.gene40808:intron 30.0%
!! AAGCTTTATTTCACTGTTTC+TGG + chr1.2:59681229-59681248 MS.gene40808:intron 30.0%
!!! GTGTTTTAGTTGTTGCTAAT+AGG + chr1.2:59679592-59679611 MS.gene40808:intron 30.0%
AGATTATTGAGATCCATCAG+TGG + chr1.2:59679666-59679685 MS.gene40808:intron 35.0%
ATACTGAAAACCTTGTAAGC+TGG - chr1.2:59680218-59680237 None:intergenic 35.0%
CACAGACAATATTTGCAACA+AGG - chr1.2:59681642-59681661 None:intergenic 35.0%
CAGATGAGGTTGTATCAAAA+AGG + chr1.2:59680984-59681003 MS.gene40808:CDS 35.0%
CTCACAGGAAAAACAATGAT+GGG - chr1.2:59681068-59681087 None:intergenic 35.0%
CTGCATGTATTCTCTTGTTA+AGG - chr1.2:59680735-59680754 None:intergenic 35.0%
CTGGTTGGAAAAACAACATA+AGG - chr1.2:59680199-59680218 None:intergenic 35.0%
GAAAGGCTACAAATACAATC+AGG - chr1.2:59681594-59681613 None:intergenic 35.0%
GCAAATAATTAGAACCCGTT+AGG - chr1.2:59679946-59679965 None:intergenic 35.0%
TCTCACAGGAAAAACAATGA+TGG - chr1.2:59681069-59681088 None:intergenic 35.0%
TGAAACCATGCTCTATTACT+TGG + chr1.2:59680702-59680721 MS.gene40808:intron 35.0%
TGGTACTAGTGTTTGAAAAC+AGG + chr1.2:59681249-59681268 MS.gene40808:intron 35.0%
TGTAATTTGATCCATGTAGC+CGG + chr1.2:59681464-59681483 MS.gene40808:intron 35.0%
TTAAACATGCCAACATCATG+CGG - chr1.2:59681394-59681413 None:intergenic 35.0%
TTCAACCAAGTAATAGAGCA+TGG - chr1.2:59680710-59680729 None:intergenic 35.0%
! AATTTGCAATCCCTTTTTGG+CGG + chr1.2:59680827-59680846 MS.gene40808:CDS 35.0%
! GCTTACAAGGTTTTCAGTAT+TGG + chr1.2:59680218-59680237 MS.gene40808:intron 35.0%
! GGAAATTTGCAATCCCTTTT+TGG + chr1.2:59680824-59680843 MS.gene40808:CDS 35.0%
! TAAGCCTTATCCCACTAAAT+GGG - chr1.2:59681491-59681510 None:intergenic 35.0%
! TTGTACCACTTAAACCCTTT+TGG + chr1.2:59679744-59679763 MS.gene40808:intron 35.0%
!! TAGGTGTTGTTGTTGTTAGT+TGG + chr1.2:59681509-59681528 MS.gene40808:intron 35.0%
AAAAAGGGGAGAGAAGAAGA+AGG - chr1.2:59679357-59679376 None:intergenic 40.0%
AAATTGGGGGAAGGAAAAAG+GGG - chr1.2:59679371-59679390 None:intergenic 40.0%
AACCATGTCAGTTAAGGACA+AGG + chr1.2:59681769-59681788 MS.gene40808:CDS 40.0%
AAGAGGAAATCACGTAAAGG+TGG + chr1.2:59680758-59680777 MS.gene40808:CDS 40.0%
ACCCAATGGAGGCAAAAAAT+GGG + chr1.2:59680150-59680169 MS.gene40808:CDS 40.0%
AGAAATTGGGGGAAGGAAAA+AGG - chr1.2:59679373-59679392 None:intergenic 40.0%
AGAAGAAGAAGGAACCTGAT+CGG - chr1.2:59679346-59679365 None:intergenic 40.0%
ATATTGTCTGTGCCTTGCTA+AGG + chr1.2:59681650-59681669 MS.gene40808:intron 40.0%
ATGTCCAGTTTGTGCATTGA+GGG + chr1.2:59680445-59680464 MS.gene40808:CDS 40.0%
CATTGATGAAGAACACCCAA+TGG + chr1.2:59680136-59680155 MS.gene40808:CDS 40.0%
CATTTAGTGGGATAAGGCTT+AGG + chr1.2:59681490-59681509 MS.gene40808:intron 40.0%
CTCGCAGATTCATTACCTAA+AGG - chr1.2:59680917-59680936 None:intergenic 40.0%
GAAATTGGGGGAAGGAAAAA+GGG - chr1.2:59679372-59679391 None:intergenic 40.0%
GATATAAATGACGACAGCAG+CGG - chr1.2:59680893-59680912 None:intergenic 40.0%
GCATGAGTTCTATTGTCAAC+TGG + chr1.2:59681702-59681721 MS.gene40808:intron 40.0%
GGAAAATTATGCCCTTAGCA+AGG - chr1.2:59681665-59681684 None:intergenic 40.0%
GTGCGACAGAAATGATAAGT+AGG - chr1.2:59681195-59681214 None:intergenic 40.0%
TATGTCCAGTTTGTGCATTG+AGG + chr1.2:59680444-59680463 MS.gene40808:CDS 40.0%
TATTGTCTGTGCCTTGCTAA+GGG + chr1.2:59681651-59681670 MS.gene40808:intron 40.0%
TGAAAACCTTGTAAGCTGGT+TGG - chr1.2:59680214-59680233 None:intergenic 40.0%
TGATTGATCGTTCAGGTGAA+AGG - chr1.2:59681611-59681630 None:intergenic 40.0%
TTAGACGAGGACACTATACA+TGG - chr1.2:59680857-59680876 None:intergenic 40.0%
TTGGGTGTTCTTCATCAATG+TGG - chr1.2:59680136-59680155 None:intergenic 40.0%
TTGTCCTTAACTGACATGGT+TGG - chr1.2:59681770-59681789 None:intergenic 40.0%
! AAGCCTTATCCCACTAAATG+GGG - chr1.2:59681490-59681509 None:intergenic 40.0%
! CGCGAAACATTTGACAGTTT+TGG + chr1.2:59681276-59681295 MS.gene40808:intron 40.0%
! CTAAGCCTTATCCCACTAAA+TGG - chr1.2:59681492-59681511 None:intergenic 40.0%
! GTTTTTCCAACCAGCTTACA+AGG + chr1.2:59680205-59680224 MS.gene40808:intron 40.0%
ACATGGAGATCCGCCAAAAA+GGG - chr1.2:59680840-59680859 None:intergenic 45.0%
ACGACGCGGATGAAGATATA+AGG + chr1.2:59680054-59680073 MS.gene40808:CDS 45.0%
CACCCAATGGAGGCAAAAAA+TGG + chr1.2:59680149-59680168 MS.gene40808:CDS 45.0%
CATGTCAGTTAAGGACAAGG+AGG + chr1.2:59681772-59681791 MS.gene40808:CDS 45.0%
CCCAATGGAGGCAAAAAATG+GGG + chr1.2:59680151-59680170 MS.gene40808:CDS 45.0%
CGACGCGGATGAAGATATAA+GGG + chr1.2:59680055-59680074 MS.gene40808:CDS 45.0%
CGCAAGAGGAAATCACGTAA+AGG + chr1.2:59680755-59680774 MS.gene40808:CDS 45.0%
CTCCTTGTCCTTAACTGACA+TGG - chr1.2:59681774-59681793 None:intergenic 45.0%
GAAGAAGAAGGAACCTGATC+GGG - chr1.2:59679345-59679364 None:intergenic 45.0%
GACACCAACCATGTCAGTTA+AGG + chr1.2:59681763-59681782 MS.gene40808:CDS 45.0%
GAGAGAAAGAAATTGGGGGA+AGG - chr1.2:59679380-59679399 None:intergenic 45.0%
GCTCACATAACCCTACAACA+TGG + chr1.2:59680485-59680504 MS.gene40808:CDS 45.0%
TACATGGAGATCCGCCAAAA+AGG - chr1.2:59680841-59680860 None:intergenic 45.0%
TAGTACCAACCGCATGATGT+TGG + chr1.2:59681382-59681401 MS.gene40808:intron 45.0%
TGATGAAGAACACCCAATGG+AGG + chr1.2:59680139-59680158 MS.gene40808:CDS 45.0%
TGGCTGAACCGAATAGAACT+TGG - chr1.2:59680542-59680561 None:intergenic 45.0%
! ACATGGTTGGTGTCTCTACA+TGG - chr1.2:59681757-59681776 None:intergenic 45.0%
! ATGCGGTTGGTACTAATAGC+GGG - chr1.2:59681377-59681396 None:intergenic 45.0%
! CATGCGGTTGGTACTAATAG+CGG - chr1.2:59681378-59681397 None:intergenic 45.0%
!!! ACCCCATTTTTTGCCTCCAT+TGG - chr1.2:59680155-59680174 None:intergenic 45.0%
!!! CCCCATTTTTTGCCTCCATT+GGG - chr1.2:59680154-59680173 None:intergenic 45.0%
ACATGCCAACATCATGCGGT+TGG - chr1.2:59681390-59681409 None:intergenic 50.0%
ACCTGATCGGGATTGAAGAG+CGG - chr1.2:59679333-59679352 None:intergenic 50.0%
AGAGAGACGAGAAGACCAAG+AGG - chr1.2:59679288-59679307 None:intergenic 50.0%
AGTTTGTGCATTGAGGGTGG+GGG + chr1.2:59680451-59680470 MS.gene40808:CDS 50.0%
CAGTTTGTGCATTGAGGGTG+GGG + chr1.2:59680450-59680469 MS.gene40808:CDS 50.0%
CCAGTTTGTGCATTGAGGGT+GGG + chr1.2:59680449-59680468 MS.gene40808:CDS 50.0%
CTTATCCCACTAAATGGGGC+CGG - chr1.2:59681486-59681505 None:intergenic 50.0%
GAGAATACATGCAGCGCAAG+AGG + chr1.2:59680741-59680760 MS.gene40808:intron 50.0%
TCCAGTTTGTGCATTGAGGG+TGG + chr1.2:59680448-59680467 MS.gene40808:CDS 50.0%
TTGAGGAAGGAGCTGAGAGA+AGG + chr1.2:59680803-59680822 MS.gene40808:CDS 50.0%
! ATCAGGTGCTGCATTAGACG+AGG - chr1.2:59680870-59680889 None:intergenic 50.0%
!! AAGAGCGGCTTGATAACGTC+TGG - chr1.2:59679318-59679337 None:intergenic 50.0%
!! ATTGAGGGTGGGGGTTGATA+TGG + chr1.2:59680460-59680479 MS.gene40808:CDS 50.0%
!! GGCTTGATAACGTCTGGAAG+CGG - chr1.2:59679312-59679331 None:intergenic 50.0%
!! GGGTTTTGATGAGAACGACG+CGG + chr1.2:59680040-59680059 MS.gene40808:CDS 50.0%
AATGACGACAGCAGCGGATC+AGG - chr1.2:59680887-59680906 None:intergenic 55.0%
ACTAAATGGGGCCGGCTACA+TGG - chr1.2:59681478-59681497 None:intergenic 55.0%
ATGTAGCCGGCCCCATTTAG+TGG + chr1.2:59681477-59681496 MS.gene40808:intron 55.0%
CCCACCCTCAATGCACAAAC+TGG - chr1.2:59680452-59680471 None:intergenic 55.0%
CGGCCCCATTTAGTGGGATA+AGG + chr1.2:59681484-59681503 MS.gene40808:intron 55.0%
TGTAGCCGGCCCCATTTAGT+GGG + chr1.2:59681478-59681497 MS.gene40808:intron 55.0%
GCCGCTCTTCAATCCCGATC+AGG + chr1.2:59679329-59679348 MS.gene40808:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 59679272 59681862 59679272 ID=MS.gene40808
chr1.2 mRNA 59679272 59681862 59679272 ID=MS.gene40808.t1;Parent=MS.gene40808
chr1.2 exon 59679272 59679350 59679272 ID=MS.gene40808.t1.exon1;Parent=MS.gene40808.t1
chr1.2 CDS 59679272 59679350 59679272 ID=cds.MS.gene40808.t1;Parent=MS.gene40808.t1
chr1.2 exon 59680030 59680172 59680030 ID=MS.gene40808.t1.exon2;Parent=MS.gene40808.t1
chr1.2 CDS 59680030 59680172 59680030 ID=cds.MS.gene40808.t1;Parent=MS.gene40808.t1
chr1.2 exon 59680443 59680542 59680443 ID=MS.gene40808.t1.exon3;Parent=MS.gene40808.t1
chr1.2 CDS 59680443 59680542 59680443 ID=cds.MS.gene40808.t1;Parent=MS.gene40808.t1
chr1.2 exon 59680744 59681005 59680744 ID=MS.gene40808.t1.exon4;Parent=MS.gene40808.t1
chr1.2 CDS 59680744 59681005 59680744 ID=cds.MS.gene40808.t1;Parent=MS.gene40808.t1
chr1.2 exon 59681754 59681862 59681754 ID=MS.gene40808.t1.exon5;Parent=MS.gene40808.t1
chr1.2 CDS 59681754 59681862 59681754 ID=cds.MS.gene40808.t1;Parent=MS.gene40808.t1
Gene Sequence

>MS.gene40808

ATGGACGGTGATTCCTCTTGGTCTTCTCGTCTCTCTTCCGCTTCCAGACGTTATCAAGCCGCTCTTCAATCCCGATCAGGTTCCTTCTTCTTCTCTCCCCTTTTTCCTTCCCCCAATTTCTTTCTCTCTATAGCTCAATTCAATTTTCATCATTTTTTACCTTTACATATAGATACTAGCTCAGTTAGGGTAATTTTCGATTGTAAATGTTTTGATTTCATTTATATTCCAAAAATTAATCTAAAATTGAATTCATTACGTGAAAAAAAAAATTGTTACTTTGAAAGTTGTTTTCACTTTTCAGCTTATGATTATTTTATGTGTTTTAGTTGTTGCTAATAGGAAGAGAAATTAGAATTATATATGTAATCGGCAATTGGAATTTGTGATGTATAGATTATTGAGATCCATCAGTGGAATTTAAATTGTTTGGCTTTAATTAAGACAAGATTTTTATCACTAATTATAAAATTTGTACCACTTAAACCCTTTTGGAATAAACAGCTTAATTTGCAGCTTATGCTAGCTTACAGCATAAAGTTAAATTGTTTTCGTATAAGCTATAAGTTATTTTCATAACCTATCTTAGAAAATTTATGAAATTAAGCTGAAATCAACTTATGAGCATTTTATAAGCTGTTTTATCACTAAATAAGCTCAAATAAGTCAATCCTAACGGGTTCTAATTATTTGCCTCTTTACTCCTATGTTTATGTGCAAGTATTTGTGGTTATTGATGTGAGGCTGTTCATATGTAGATATGTTTATGGGTTTTGATGAGAACGACGCGGATGAAGATATAAGGGAAGAGTTTCTCTGTCCATTTTGTTCTGAGTATTTTGATATTGTTGGATTGTGCTGCCACATTGATGAAGAACACCCAATGGAGGCAAAAAATGGGGTATGTATGACTACTTTTGTTTGCCTTATGTTGTTTTTCCAACCAGCTTACAAGGTTTTCAGTATTGGGTCTCTGACAAATGCTTAATTAGTGCAAGCCGTAAAGCTTTTGTTCATTCCTATACATATATTTCCCTGTTTATTTCATATAGGTGAAATCAATATTATTTTACTATGTTGACGTTCGAAAAAAGTTATTTTTTTGTGTAGTTAGAGAAATCAATAGTTTTTTTTTTTTTTTTTTTTTGAATTATGACATTTTTGTGTGCAGGTATGTCCAGTTTGTGCATTGAGGGTGGGGGTTGATATGGTTGCTCACATAACCCTACAACATGGAAGTATATTTAAGATATCCTTTTTTTTCTCACCAAGTTCTATTCGGTTCAGCCAATTCTTAAATGATTTTTACATACTAAATTGCAGATTTTTGAGCATTTAATAAGTCAAGTTTTTTTACAATATAGAACATGTTGCTATGAAGTTTACTTATTTTAAGGTCAATCAATAATAAGATAAAAAGGATTTTATGTTGAAACCATGCTCTATTACTTGGTTGAATTCCTTAACAAGAGAATACATGCAGCGCAAGAGGAAATCACGTAAAGGTGGATCTTATTCTACACTTTCATTATTGAGGAAGGAGCTGAGAGAAGGAAATTTGCAATCCCTTTTTGGCGGATCTCCATGTATAGTGTCCTCGTCTAATGCAGCACCTGATCCGCTGCTGTCGTCATTTATATCACCTTTAGGTAATGAATCTGCGAGTTCTCAGTCTCACACACATACTGAGACAAGTTCATCCAAGAAATTATCAGATGAGGTTGTATCAAAAAGGTATTTCTTTTTAATTTCTGTAACAAGTTTTCCTAACTGAATTGATATATGATATGGTTCCCATCATTGTTTTTCCTGTGAGAATACTAAATATTGTTTATACGTATATGAAATGTTCAAGAAATTGGTAGGTTCTATTCTAACATTGCAATAAGATTGTATTCATTTTCATGTTTTTTTTTTTTTCCTACTTATCATTTCTGTCGCACACTAGAGTCCTGAAAAGCTTTATTTCACTGTTTCTGGTACTAGTGTTTGAAAACAGGAAAACGCGAAACATTTGACAGTTTTGGAATTAAAAGTGAAAACAAAATAAGAACAGAAAACATTTCTTCAAACTTAAATGGACTTTAAGAGACTTGTTTTCTCCCGCTATTAGTACCAACCGCATGATGTTGGCATGTTTAATTTATCTGTGAATTTAGTTACAGGCTTATGTTTATGATAGAACATTATGGTGTAATTTGATCCATGTAGCCGGCCCCATTTAGTGGGATAAGGCTTAGGTGTTGTTGTTGTTAGTTGGTTATATCTTCCAGCTTATTCAATTGACCATTTTATTTACTTTGTATGTATTTAAAAATTCCTGATTGTATTTGTAGCCTTTCACCTGAACGATCAATCAATTTAGTGCCTTGTTGCAAATATTGTCTGTGCCTTGCTAAGGGCATAATTTTCCAATAACATTACACAATGGCATGAGTTCTATTGTCAACTGGTTTCTAACAAGTCTATTTTTTCTTTTCAGCCATGTAGAGACACCAACCATGTCAGTTAAGGACAAGGAGGAGAAGACGAAAAGATGTGAGTTTGTTCAAGGACTGTTGATGTCCACAATATTTGATGACGATTTATGA
Protein sequence

>MS.gene40808.t1

MDGDSSWSSRLSSASRRYQAALQSRSDMFMGFDENDADEDIREEFLCPFCSEYFDIVGLCCHIDEEHPMEAKNGVCPVCALRVGVDMVAHITLQHGSIFKISFFFSPKYMQRKRKSRKGGSYSTLSLLRKELREGNLQSLFGGSPCIVSSSNAAPDPLLSSFISPLGNESASSQSHTHTETSSSKKLSDEVVSKSHVETPTMSVKDKEEKTKRCEFVQGLLMSTIFDDDL