Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056095.t1 | XP_024638592.1 | 89.6 | 230 | 15 | 1 | 1 | 230 | 1 | 221 | 1.90E-107 | 398.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056095.t1 | Q84J70 | 56.7 | 233 | 88 | 3 | 1 | 230 | 1 | 223 | 9.9e-65 | 248.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056095.t1 | I3TAQ3 | 89.6 | 230 | 15 | 1 | 1 | 230 | 1 | 221 | 1.4e-107 | 398.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055206 | MS.gene056095 | -0.809841 | 1.55E-50 | -1.69E-46 |
| MS.gene056095 | MS.gene071757 | -0.80987 | 1.53E-50 | -1.69E-46 |
| MS.gene056095 | MS.gene071758 | -0.818142 | 2.29E-52 | -1.69E-46 |
| MS.gene056095 | MS.gene26624 | 0.802201 | 6.28E-49 | -1.69E-46 |
| MS.gene056095 | MS.gene26705 | 0.804028 | 2.63E-49 | -1.69E-46 |
| MS.gene056095 | MS.gene30950 | 0.812335 | 4.47E-51 | -1.69E-46 |
| MS.gene056095 | MS.gene31164 | 0.813283 | 2.77E-51 | -1.69E-46 |
| MS.gene056095 | MS.gene40808 | 0.861793 | 7.99E-64 | -1.69E-46 |
| MS.gene056095 | MS.gene45483 | 0.839847 | 1.24E-57 | -1.69E-46 |
| MS.gene056095 | MS.gene47828 | -0.800297 | 1.54E-48 | -1.69E-46 |
| MS.gene056095 | MS.gene72174 | -0.803751 | 3.00E-49 | -1.69E-46 |
| MS.gene056095 | MS.gene75201 | 0.801263 | 9.78E-49 | -1.69E-46 |
| MS.gene056095 | MS.gene85654 | -0.800793 | 1.22E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056095.t1 | MTR_1g083780 | 93.913 | 230 | 3 | 1 | 1 | 230 | 1 | 219 | 9.20e-159 | 438 |
| MS.gene056095.t1 | MTR_2g035070 | 53.271 | 214 | 87 | 7 | 24 | 230 | 20 | 227 | 1.31e-63 | 197 |
| MS.gene056095.t1 | MTR_7g112403 | 73.984 | 123 | 30 | 1 | 110 | 230 | 1 | 123 | 1.18e-54 | 171 |
| MS.gene056095.t1 | MTR_7g112400 | 65.833 | 120 | 24 | 4 | 1 | 103 | 1 | 120 | 1.62e-46 | 151 |
| MS.gene056095.t1 | MTR_7g109145 | 33.937 | 221 | 110 | 3 | 14 | 230 | 5 | 193 | 2.96e-29 | 108 |
| MS.gene056095.t1 | MTR_7g109145 | 40.000 | 160 | 79 | 3 | 75 | 230 | 3 | 149 | 4.52e-24 | 94.0 |
| MS.gene056095.t1 | MTR_4g088430 | 31.381 | 239 | 109 | 8 | 7 | 228 | 6 | 206 | 4.03e-20 | 85.1 |
| MS.gene056095.t1 | MTR_7g109145 | 38.312 | 154 | 78 | 3 | 81 | 230 | 1 | 141 | 1.71e-18 | 79.3 |
| MS.gene056095.t1 | MTR_4g104770 | 29.224 | 219 | 122 | 8 | 15 | 229 | 11 | 200 | 1.20e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056095.t1 | AT3G05700 | 59.227 | 233 | 82 | 3 | 1 | 230 | 1 | 223 | 4.22e-91 | 267 |
| MS.gene056095.t1 | AT5G26990 | 53.879 | 232 | 95 | 3 | 1 | 230 | 1 | 222 | 5.70e-82 | 244 |
| MS.gene056095.t1 | AT3G05700 | 61.307 | 199 | 64 | 3 | 1 | 196 | 1 | 189 | 3.19e-80 | 239 |
| MS.gene056095.t1 | AT1G56280 | 51.142 | 219 | 86 | 4 | 11 | 228 | 1 | 199 | 5.73e-67 | 205 |
| MS.gene056095.t1 | AT1G56280 | 51.724 | 203 | 76 | 5 | 27 | 228 | 24 | 205 | 2.80e-59 | 186 |
| MS.gene056095.t1 | AT5G49230 | 48.020 | 202 | 86 | 5 | 27 | 228 | 27 | 209 | 1.11e-57 | 182 |
| MS.gene056095.t1 | AT3G06760 | 49.519 | 208 | 91 | 4 | 27 | 230 | 27 | 224 | 2.54e-56 | 179 |
| MS.gene056095.t1 | AT5G49230 | 46.535 | 202 | 84 | 5 | 27 | 228 | 27 | 204 | 1.95e-53 | 171 |
| MS.gene056095.t1 | AT3G06760 | 44.762 | 210 | 108 | 5 | 27 | 230 | 27 | 234 | 2.33e-37 | 130 |
| MS.gene056095.t1 | AT1G02750 | 33.023 | 215 | 122 | 4 | 19 | 229 | 20 | 216 | 1.85e-28 | 107 |
| MS.gene056095.t1 | AT4G02200 | 35.678 | 199 | 102 | 5 | 34 | 227 | 32 | 209 | 7.78e-28 | 105 |
| MS.gene056095.t1 | AT4G02200 | 33.333 | 213 | 102 | 6 | 34 | 227 | 32 | 223 | 7.82e-24 | 95.5 |
| MS.gene056095.t1 | AT4G02200 | 34.031 | 191 | 100 | 5 | 34 | 219 | 32 | 201 | 2.23e-23 | 94.0 |
| MS.gene056095.t1 | AT1G02750 | 30.233 | 215 | 112 | 4 | 19 | 229 | 20 | 200 | 3.10e-21 | 88.2 |
Find 51 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATATGTAGATATGTTTA+TGG | 0.158593 | 1.3:-59361334 | MS.gene056095:intron |
| AACCTCATCTGATAATTTCT+TGG | 0.251118 | 1.3:+59360381 | None:intergenic |
| TACATGGAGATCCGCCAAAA+AGG | 0.298414 | 1.3:+59360515 | None:intergenic |
| TCGTCATTTATATCACCTTT+AGG | 0.299231 | 1.3:-59360454 | MS.gene056095:CDS |
| TCAAAATACTCAGAACAAAA+TGG | 0.307531 | 1.3:+59361261 | None:intergenic |
| ACGACGCGGATGAAGATATA+AGG | 0.313415 | 1.3:-59361299 | MS.gene056095:CDS |
| TAAATATACTTCCATGTTGT+AGG | 0.329218 | 1.3:+59360857 | None:intergenic |
| CAGATGAGGTTGTATCAAAA+AGG | 0.348269 | 1.3:-59360369 | MS.gene056095:intron |
| TCATATGTAGATATGTTTAT+GGG | 0.364564 | 1.3:-59361333 | MS.gene056095:intron |
| CCCACCCTCAATGCACAAAC+TGG | 0.369022 | 1.3:+59360904 | None:intergenic |
| CAGTTTGTGCATTGAGGGTG+GGG | 0.399469 | 1.3:-59360903 | MS.gene056095:CDS |
| CTCCTTGTCCTTAACTGACA+TGG | 0.416686 | 1.3:+59359583 | None:intergenic |
| AAAAGATGTGAGTTTGTTCA+AGG | 0.426089 | 1.3:-59359551 | MS.gene056095:CDS |
| AATGACGACAGCAGCGGATC+AGG | 0.429498 | 1.3:+59360469 | None:intergenic |
| CCAGTTTGTGCATTGAGGGT+GGG | 0.436557 | 1.3:-59360904 | MS.gene056095:CDS |
| GGCACCAACCATGTCAGTTA+AGG | 0.449654 | 1.3:-59359591 | MS.gene056095:CDS |
| ATTCTACACTTTCATTATTG+AGG | 0.450122 | 1.3:-59360567 | MS.gene056095:CDS |
| TCCAGTTTGTGCATTGAGGG+TGG | 0.471839 | 1.3:-59360905 | MS.gene056095:CDS |
| ATGTCCAGTTTGTGCATTGA+GGG | 0.478451 | 1.3:-59360908 | MS.gene056095:CDS |
| AAATATACTTCCATGTTGTA+GGG | 0.478691 | 1.3:+59360858 | None:intergenic |
| CGACGCGGATGAAGATATAA+GGG | 0.493789 | 1.3:-59361298 | MS.gene056095:CDS |
| TACACTTTCATTATTGAGGA+AGG | 0.495459 | 1.3:-59360563 | MS.gene056095:CDS |
| GCCGCTCTTCAATCCCGATC+AGG | 0.499368 | 1.3:-59362022 | MS.gene056095:intron |
| GAAGAAGAAGGAACCTGATC+GGG | 0.499752 | 1.3:+59362009 | None:intergenic |
| AAGAGCGGCTTGATAACGTC+TGG | 0.519588 | 1.3:+59362036 | None:intergenic |
| TTGAGGAAGGAGCTGAGAGA+AGG | 0.522683 | 1.3:-59360550 | MS.gene056095:CDS |
| TCATGGACGGTGATTCCTCT+TGG | 0.522705 | 1.3:-59362081 | MS.gene056095:CDS |
| ACATGGTTGGTGCCTCTACA+TGG | 0.523150 | 1.3:+59359600 | None:intergenic |
| AGTTTGTGCATTGAGGGTGG+GGG | 0.526173 | 1.3:-59360902 | MS.gene056095:CDS |
| GAGAATACATGCAGCGCAAG+AGG | 0.529554 | 1.3:-59360612 | MS.gene056095:CDS |
| AGAAGAAGAAGGAACCTGAT+CGG | 0.544190 | 1.3:+59362008 | None:intergenic |
| CTCGCAGATTCATTACCTAA+AGG | 0.546009 | 1.3:+59360439 | None:intergenic |
| TAAATCGTCATCAAATATTG+TGG | 0.557897 | 1.3:+59359517 | None:intergenic |
| ATCCAAGAAATTATCAGATG+AGG | 0.560831 | 1.3:-59360383 | MS.gene056095:CDS |
| TATGTCCAGTTTGTGCATTG+AGG | 0.571210 | 1.3:-59360909 | MS.gene056095:CDS |
| GGCTTGATAACGTCTGGAAG+CGG | 0.576629 | 1.3:+59362042 | None:intergenic |
| CGCAAGAGGAAATCACGTAA+AGG | 0.589197 | 1.3:-59360598 | MS.gene056095:CDS |
| TTGTCCTTAACTGACATGGT+TGG | 0.595748 | 1.3:+59359587 | None:intergenic |
| TTGGGTGTTCTTCATCAATG+TGG | 0.616285 | 1.3:+59361220 | None:intergenic |
| CATTGATGAAGAACACCCAA+TGG | 0.620331 | 1.3:-59361217 | MS.gene056095:CDS |
| TTAGACGAGGACACTATACA+TGG | 0.625691 | 1.3:+59360499 | None:intergenic |
| AAGAGGAAATCACGTAAAGG+TGG | 0.657544 | 1.3:-59360595 | MS.gene056095:CDS |
| ACCTGATCGGGATTGAAGAG+CGG | 0.658265 | 1.3:+59362021 | None:intergenic |
| AGAGAGACGAGAAGACCAAG+AGG | 0.660889 | 1.3:+59362066 | None:intergenic |
| TTTCAGATCACAATCATGGA+CGG | 0.662516 | 1.3:-59362094 | None:intergenic |
| GATATAAATGACGACAGCAG+CGG | 0.665482 | 1.3:+59360463 | None:intergenic |
| TGATGAAGAACACCCAATGG+AGG | 0.674724 | 1.3:-59361214 | MS.gene056095:CDS |
| AACCATGTCAGTTAAGGACA+AGG | 0.681006 | 1.3:-59359585 | MS.gene056095:CDS |
| ATCAGGTGCTGCATTAGACG+AGG | 0.688052 | 1.3:+59360486 | None:intergenic |
| CATGTCAGTTAAGGACAAGG+AGG | 0.695280 | 1.3:-59359582 | MS.gene056095:CDS |
| GCTCACATAACCCTACAACA+TGG | 0.721119 | 1.3:-59360868 | MS.gene056095:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAGAATTATATATGTAAT+CGG | - | chr1.3:59359863-59359882 | MS.gene056095:intron | 10.0% |
| !!! | ATTCAATTTAGATTAATTTT+TGG | + | chr1.3:59359745-59359764 | None:intergenic | 10.0% |
| !! | CAATCAATAATAAGATAAAA+AGG | - | chr1.3:59360910-59360929 | MS.gene056095:CDS | 15.0% |
| !! | TGTAAAAATCATTTAAGAAT+TGG | + | chr1.3:59360802-59360821 | None:intergenic | 15.0% |
| !!! | TATGAAGTTTACTTATTTTA+AGG | - | chr1.3:59360886-59360905 | MS.gene056095:CDS | 15.0% |
| !!! | TTTCATAAATTTTCTAAGAT+AGG | + | chr1.3:59360094-59360113 | None:intergenic | 15.0% |
| !! | AACATTTCTTCAAACTTAAA+TGG | - | chr1.3:59361569-59361588 | MS.gene056095:intron | 20.0% |
| !! | AATTAAGCTGTTTATTCAAA+AGG | + | chr1.3:59360003-59360022 | None:intergenic | 20.0% |
| !! | ATATGAAATGTTCAAGAAAT+TGG | - | chr1.3:59361351-59361370 | MS.gene056095:intron | 20.0% |
| !! | ATGTTTATGATAGAACATTA+TGG | - | chr1.3:59361680-59361699 | MS.gene056095:intron | 20.0% |
| !! | ATTAAGCTGTTTATTCAAAA+GGG | + | chr1.3:59360002-59360021 | None:intergenic | 20.0% |
| !! | TACATACAAAGTAAGTAAAA+TGG | + | chr1.3:59361800-59361819 | None:intergenic | 20.0% |
| !! | TCATATGTAGATATGTTTAT+GGG | - | chr1.3:59360260-59360279 | MS.gene056095:intron | 20.0% |
| !! | TTCATATGTAGATATGTTTA+TGG | - | chr1.3:59360259-59360278 | MS.gene056095:intron | 20.0% |
| ! | AAATACTTGCACATAAACAT+AGG | + | chr1.3:59360218-59360237 | None:intergenic | 25.0% |
| ! | AAATATACTTCCATGTTGTA+GGG | + | chr1.3:59360738-59360757 | None:intergenic | 25.0% |
| ! | AACAATTTAAATTCCACTGA+TGG | + | chr1.3:59359923-59359942 | None:intergenic | 25.0% |
| ! | AACTGAATTGATATGTGATA+TGG | - | chr1.3:59361280-59361299 | MS.gene056095:CDS | 25.0% |
| ! | ACAATATTTAGTATTCTCAC+AGG | + | chr1.3:59361323-59361342 | None:intergenic | 25.0% |
| ! | ATTCTACACTTTCATTATTG+AGG | - | chr1.3:59361026-59361045 | MS.gene056095:intron | 25.0% |
| ! | TAAATATACTTCCATGTTGT+AGG | + | chr1.3:59360739-59360758 | None:intergenic | 25.0% |
| ! | TAAATCGTCATCAAATATTG+TGG | + | chr1.3:59362079-59362098 | None:intergenic | 25.0% |
| ! | TATCACATATCAATTCAGTT+AGG | + | chr1.3:59361280-59361299 | None:intergenic | 25.0% |
| ! | TCAAAATACTCAGAACAAAA+TGG | + | chr1.3:59360335-59360354 | None:intergenic | 25.0% |
| ! | TCACCTATATGAAATAAACA+GGG | + | chr1.3:59360548-59360567 | None:intergenic | 25.0% |
| ! | TCAGTGGAATTTAAATTGTT+TGG | - | chr1.3:59359923-59359942 | MS.gene056095:intron | 25.0% |
| ! | TTATATATGTAATCGGCAAT+TGG | - | chr1.3:59359870-59359889 | MS.gene056095:intron | 25.0% |
| ! | TTATCTGTGAATTTAGTTAC+AGG | - | chr1.3:59361654-59361673 | MS.gene056095:intron | 25.0% |
| ! | TTCACCTATATGAAATAAAC+AGG | + | chr1.3:59360549-59360568 | None:intergenic | 25.0% |
| ! | TTTATTCAAAAGGGTTTAAG+TGG | + | chr1.3:59359993-59360012 | None:intergenic | 25.0% |
| ! | TTTCCAATAACATTACACAA+TGG | - | chr1.3:59361919-59361938 | MS.gene056095:intron | 25.0% |
| ! | TTTCCCTGTTTATTTCATAT+AGG | - | chr1.3:59360542-59360561 | MS.gene056095:CDS | 25.0% |
| !!! | TCTGAGTATTTTGATATTGT+TGG | - | chr1.3:59360341-59360360 | MS.gene056095:intron | 25.0% |
| AAACAGGGAAATATATGTAG+AGG | + | chr1.3:59360533-59360552 | None:intergenic | 30.0% | |
| AAATGGTCAATTGAATAAGC+TGG | + | chr1.3:59361783-59361802 | None:intergenic | 30.0% | |
| AACCTCATCTGATAATTTCT+TGG | + | chr1.3:59361215-59361234 | None:intergenic | 30.0% | |
| ACATAAACATAGGAGTAAAG+AGG | + | chr1.3:59360208-59360227 | None:intergenic | 30.0% | |
| ACTAAATTGATTGATCGTTC+AGG | + | chr1.3:59361857-59361876 | None:intergenic | 30.0% | |
| AGCTATAGAGAGAAAGAAAT+TGG | + | chr1.3:59359629-59359648 | None:intergenic | 30.0% | |
| AGGAATGAACAAAAGCTTTA+CGG | + | chr1.3:59360513-59360532 | None:intergenic | 30.0% | |
| ATATAGATACTAGCTCAGTT+AGG | - | chr1.3:59359680-59359699 | MS.gene056095:intron | 30.0% | |
| ATCCAAGAAATTATCAGATG+AGG | - | chr1.3:59361210-59361229 | MS.gene056095:CDS | 30.0% | |
| ATGCCATTGTGTAATGTTAT+TGG | + | chr1.3:59361925-59361944 | None:intergenic | 30.0% | |
| CTATAGAGAGAAAGAAATTG+GGG | + | chr1.3:59359627-59359646 | None:intergenic | 30.0% | |
| CTCAAATAAGTCAATCCTAA+CGG | - | chr1.3:59360168-59360187 | MS.gene056095:intron | 30.0% | |
| GAAATGTTCAAGAAATTGGT+AGG | - | chr1.3:59361355-59361374 | MS.gene056095:intron | 30.0% | |
| GAGCTAGTATCTATATGTAA+AGG | + | chr1.3:59359676-59359695 | None:intergenic | 30.0% | |
| GCTATAGAGAGAAAGAAATT+GGG | + | chr1.3:59359628-59359647 | None:intergenic | 30.0% | |
| TACACTTTCATTATTGAGGA+AGG | - | chr1.3:59361030-59361049 | MS.gene056095:intron | 30.0% | |
| TATAGAGAGAAAGAAATTGG+GGG | + | chr1.3:59359626-59359645 | None:intergenic | 30.0% | |
| TATAGATACTAGCTCAGTTA+GGG | - | chr1.3:59359681-59359700 | MS.gene056095:intron | 30.0% | |
| TATTTGTGGTTATTGATGTG+AGG | - | chr1.3:59360233-59360252 | MS.gene056095:intron | 30.0% | |
| TCAAATAAGTCAATCCTAAC+GGG | - | chr1.3:59360169-59360188 | MS.gene056095:intron | 30.0% | |
| TCGTCATTTATATCACCTTT+AGG | - | chr1.3:59361139-59361158 | MS.gene056095:intron | 30.0% | |
| TGTTTATGTGCAAGTATTTG+TGG | - | chr1.3:59360219-59360238 | MS.gene056095:intron | 30.0% | |
| ! | AAAAGATGTGAGTTTGTTCA+AGG | - | chr1.3:59362042-59362061 | MS.gene056095:CDS | 30.0% |
| ! | ACAGTGAAATAAAGCTTTTC+AGG | + | chr1.3:59361465-59361484 | None:intergenic | 30.0% |
| ! | AGAACTTGGTGAGAAAAAAA+AGG | + | chr1.3:59360768-59360787 | None:intergenic | 30.0% |
| ! | ATTATGACATTTTTGTGTGC+AGG | - | chr1.3:59360661-59360680 | MS.gene056095:intron | 30.0% |
| ! | CTTACAAGGTTTTCAGTATT+GGG | - | chr1.3:59360459-59360478 | MS.gene056095:CDS | 30.0% |
| ! | TTTTCTCACCAAGTTCTATT+CGG | - | chr1.3:59360771-59360790 | MS.gene056095:intron | 30.0% |
| !! | AAGCTTTATTTCACTGTTTC+TGG | - | chr1.3:59361468-59361487 | MS.gene056095:intron | 30.0% |
| !!! | GTGTTTTAGTTGTTGCTAAT+AGG | - | chr1.3:59359833-59359852 | MS.gene056095:intron | 30.0% |
| AGATTATTGAGATCCATCAG+TGG | - | chr1.3:59359907-59359926 | MS.gene056095:intron | 35.0% | |
| ATACTGAAAACCTTGTAAGC+TGG | + | chr1.3:59360458-59360477 | None:intergenic | 35.0% | |
| CACAGACAATATTTGCAACA+AGG | + | chr1.3:59361881-59361900 | None:intergenic | 35.0% | |
| CAGATGAGGTTGTATCAAAA+AGG | - | chr1.3:59361224-59361243 | MS.gene056095:CDS | 35.0% | |
| CTCACAGGAAAAACAATGAT+GGG | + | chr1.3:59361308-59361327 | None:intergenic | 35.0% | |
| CTGCATGTATTCTCTTGTTA+AGG | + | chr1.3:59360975-59360994 | None:intergenic | 35.0% | |
| CTGGTTGGAAAAACAACATA+AGG | + | chr1.3:59360439-59360458 | None:intergenic | 35.0% | |
| GAAAGGCTACAAATACAATC+AGG | + | chr1.3:59361833-59361852 | None:intergenic | 35.0% | |
| GCAAATAATTAGAACCCGTT+AGG | + | chr1.3:59360186-59360205 | None:intergenic | 35.0% | |
| TCTCACAGGAAAAACAATGA+TGG | + | chr1.3:59361309-59361328 | None:intergenic | 35.0% | |
| TGAAACCATGCTCTATTACT+TGG | - | chr1.3:59360942-59360961 | MS.gene056095:intron | 35.0% | |
| TGGTACTAGTGTTTGAAAAC+AGG | - | chr1.3:59361488-59361507 | MS.gene056095:intron | 35.0% | |
| TGTAATTTGATCCATGTAGC+CGG | - | chr1.3:59361703-59361722 | MS.gene056095:intron | 35.0% | |
| TTAAACATGCCAACATCATG+CGG | + | chr1.3:59361633-59361652 | None:intergenic | 35.0% | |
| TTCAACCAAGTAATAGAGCA+TGG | + | chr1.3:59360950-59360969 | None:intergenic | 35.0% | |
| ! | AATTTGCAATCCCTTTTTGG+CGG | - | chr1.3:59361067-59361086 | MS.gene056095:intron | 35.0% |
| ! | GCTTACAAGGTTTTCAGTAT+TGG | - | chr1.3:59360458-59360477 | MS.gene056095:CDS | 35.0% |
| ! | GGAAATTTGCAATCCCTTTT+TGG | - | chr1.3:59361064-59361083 | MS.gene056095:intron | 35.0% |
| ! | TAAGCCTTATCCCACTAAAT+GGG | + | chr1.3:59361730-59361749 | None:intergenic | 35.0% |
| ! | TTTTCTTTTCAGCCATGTAG+AGG | - | chr1.3:59361981-59362000 | MS.gene056095:intron | 35.0% |
| !! | TAGGTGTTGTTGTTGTTAGT+TGG | - | chr1.3:59361748-59361767 | MS.gene056095:intron | 35.0% |
| AAAAAGGGGAGAGAAGAAGA+AGG | + | chr1.3:59359599-59359618 | None:intergenic | 40.0% | |
| AAATTGGGGGAAGGAAAAAG+GGG | + | chr1.3:59359613-59359632 | None:intergenic | 40.0% | |
| AACCATGTCAGTTAAGGACA+AGG | - | chr1.3:59362008-59362027 | MS.gene056095:intron | 40.0% | |
| AAGAGGAAATCACGTAAAGG+TGG | - | chr1.3:59360998-59361017 | MS.gene056095:intron | 40.0% | |
| ACCCAATGGAGGCAAAAAAT+GGG | - | chr1.3:59360390-59360409 | MS.gene056095:CDS | 40.0% | |
| AGAAATTGGGGGAAGGAAAA+AGG | + | chr1.3:59359615-59359634 | None:intergenic | 40.0% | |
| AGAAGAAGAAGGAACCTGAT+CGG | + | chr1.3:59359588-59359607 | None:intergenic | 40.0% | |
| ATATTGTCTGTGCCTTGCTA+AGG | - | chr1.3:59361889-59361908 | MS.gene056095:intron | 40.0% | |
| ATGTCCAGTTTGTGCATTGA+GGG | - | chr1.3:59360685-59360704 | MS.gene056095:intron | 40.0% | |
| CATTGATGAAGAACACCCAA+TGG | - | chr1.3:59360376-59360395 | MS.gene056095:CDS | 40.0% | |
| CATTTAGTGGGATAAGGCTT+AGG | - | chr1.3:59361729-59361748 | MS.gene056095:intron | 40.0% | |
| CTCGCAGATTCATTACCTAA+AGG | + | chr1.3:59361157-59361176 | None:intergenic | 40.0% | |
| GAAATTGGGGGAAGGAAAAA+GGG | + | chr1.3:59359614-59359633 | None:intergenic | 40.0% | |
| GATATAAATGACGACAGCAG+CGG | + | chr1.3:59361133-59361152 | None:intergenic | 40.0% | |
| GCATGAGTTCTATTGTCAAC+TGG | - | chr1.3:59361941-59361960 | MS.gene056095:intron | 40.0% | |
| GGAAAATTATGCCCTTAGCA+AGG | + | chr1.3:59361904-59361923 | None:intergenic | 40.0% | |
| GTGCGACAGAAATGATAAGT+AGG | + | chr1.3:59361434-59361453 | None:intergenic | 40.0% | |
| TATGTCCAGTTTGTGCATTG+AGG | - | chr1.3:59360684-59360703 | MS.gene056095:intron | 40.0% | |
| TATTGTCTGTGCCTTGCTAA+GGG | - | chr1.3:59361890-59361909 | MS.gene056095:intron | 40.0% | |
| TGAAAACCTTGTAAGCTGGT+TGG | + | chr1.3:59360454-59360473 | None:intergenic | 40.0% | |
| TGATTGATCGTTCAGGTGAA+AGG | + | chr1.3:59361850-59361869 | None:intergenic | 40.0% | |
| TTAGACGAGGACACTATACA+TGG | + | chr1.3:59361097-59361116 | None:intergenic | 40.0% | |
| TTGGGTGTTCTTCATCAATG+TGG | + | chr1.3:59360376-59360395 | None:intergenic | 40.0% | |
| TTGTCCTTAACTGACATGGT+TGG | + | chr1.3:59362009-59362028 | None:intergenic | 40.0% | |
| ! | AAGCCTTATCCCACTAAATG+GGG | + | chr1.3:59361729-59361748 | None:intergenic | 40.0% |
| ! | CGCGAAACATTTGACAGTTT+TGG | - | chr1.3:59361515-59361534 | MS.gene056095:intron | 40.0% |
| ! | CTAAGCCTTATCCCACTAAA+TGG | + | chr1.3:59361731-59361750 | None:intergenic | 40.0% |
| ! | GTTTTTCCAACCAGCTTACA+AGG | - | chr1.3:59360445-59360464 | MS.gene056095:CDS | 40.0% |
| ACATGGAGATCCGCCAAAAA+GGG | + | chr1.3:59361080-59361099 | None:intergenic | 45.0% | |
| ACGACGCGGATGAAGATATA+AGG | - | chr1.3:59360294-59360313 | MS.gene056095:intron | 45.0% | |
| CACCCAATGGAGGCAAAAAA+TGG | - | chr1.3:59360389-59360408 | MS.gene056095:CDS | 45.0% | |
| CATGTCAGTTAAGGACAAGG+AGG | - | chr1.3:59362011-59362030 | MS.gene056095:intron | 45.0% | |
| CCCAATGGAGGCAAAAAATG+GGG | - | chr1.3:59360391-59360410 | MS.gene056095:CDS | 45.0% | |
| CGACGCGGATGAAGATATAA+GGG | - | chr1.3:59360295-59360314 | MS.gene056095:intron | 45.0% | |
| CGCAAGAGGAAATCACGTAA+AGG | - | chr1.3:59360995-59361014 | MS.gene056095:intron | 45.0% | |
| CTCCTTGTCCTTAACTGACA+TGG | + | chr1.3:59362013-59362032 | None:intergenic | 45.0% | |
| GAAGAAGAAGGAACCTGATC+GGG | + | chr1.3:59359587-59359606 | None:intergenic | 45.0% | |
| GAGAGAAAGAAATTGGGGGA+AGG | + | chr1.3:59359622-59359641 | None:intergenic | 45.0% | |
| GCTCACATAACCCTACAACA+TGG | - | chr1.3:59360725-59360744 | MS.gene056095:intron | 45.0% | |
| TACATGGAGATCCGCCAAAA+AGG | + | chr1.3:59361081-59361100 | None:intergenic | 45.0% | |
| TAGTACCAACCGCATGATGT+TGG | - | chr1.3:59361621-59361640 | MS.gene056095:intron | 45.0% | |
| TGATGAAGAACACCCAATGG+AGG | - | chr1.3:59360379-59360398 | MS.gene056095:CDS | 45.0% | |
| TGGCTGAACCGAATAGAACT+TGG | + | chr1.3:59360782-59360801 | None:intergenic | 45.0% | |
| ! | ATGCGGTTGGTACTAATAGC+GGG | + | chr1.3:59361616-59361635 | None:intergenic | 45.0% |
| ! | CATGCGGTTGGTACTAATAG+CGG | + | chr1.3:59361617-59361636 | None:intergenic | 45.0% |
| !!! | ACCCCATTTTTTGCCTCCAT+TGG | + | chr1.3:59360395-59360414 | None:intergenic | 45.0% |
| !!! | CCCCATTTTTTGCCTCCATT+GGG | + | chr1.3:59360394-59360413 | None:intergenic | 45.0% |
| ACATGCCAACATCATGCGGT+TGG | + | chr1.3:59361629-59361648 | None:intergenic | 50.0% | |
| ACCTGATCGGGATTGAAGAG+CGG | + | chr1.3:59359575-59359594 | None:intergenic | 50.0% | |
| AGAGAGACGAGAAGACCAAG+AGG | + | chr1.3:59359530-59359549 | None:intergenic | 50.0% | |
| AGTTTGTGCATTGAGGGTGG+GGG | - | chr1.3:59360691-59360710 | MS.gene056095:intron | 50.0% | |
| CAGTTTGTGCATTGAGGGTG+GGG | - | chr1.3:59360690-59360709 | MS.gene056095:intron | 50.0% | |
| CCAGTTTGTGCATTGAGGGT+GGG | - | chr1.3:59360689-59360708 | MS.gene056095:intron | 50.0% | |
| CTTATCCCACTAAATGGGGC+CGG | + | chr1.3:59361725-59361744 | None:intergenic | 50.0% | |
| GAGAATACATGCAGCGCAAG+AGG | - | chr1.3:59360981-59361000 | MS.gene056095:intron | 50.0% | |
| GGCACCAACCATGTCAGTTA+AGG | - | chr1.3:59362002-59362021 | MS.gene056095:intron | 50.0% | |
| TCCAGTTTGTGCATTGAGGG+TGG | - | chr1.3:59360688-59360707 | MS.gene056095:intron | 50.0% | |
| TTGAGGAAGGAGCTGAGAGA+AGG | - | chr1.3:59361043-59361062 | MS.gene056095:intron | 50.0% | |
| ! | ACATGGTTGGTGCCTCTACA+TGG | + | chr1.3:59361996-59362015 | None:intergenic | 50.0% |
| ! | ATCAGGTGCTGCATTAGACG+AGG | + | chr1.3:59361110-59361129 | None:intergenic | 50.0% |
| !! | AAGAGCGGCTTGATAACGTC+TGG | + | chr1.3:59359560-59359579 | None:intergenic | 50.0% |
| !! | ATTGAGGGTGGGGGTTGATA+TGG | - | chr1.3:59360700-59360719 | MS.gene056095:intron | 50.0% |
| !! | GGCTTGATAACGTCTGGAAG+CGG | + | chr1.3:59359554-59359573 | None:intergenic | 50.0% |
| !! | GGGTTTTGATGAGAACGACG+CGG | - | chr1.3:59360280-59360299 | MS.gene056095:intron | 50.0% |
| AATGACGACAGCAGCGGATC+AGG | + | chr1.3:59361127-59361146 | None:intergenic | 55.0% | |
| ACTAAATGGGGCCGGCTACA+TGG | + | chr1.3:59361717-59361736 | None:intergenic | 55.0% | |
| ATGTAGCCGGCCCCATTTAG+TGG | - | chr1.3:59361716-59361735 | MS.gene056095:intron | 55.0% | |
| CCCACCCTCAATGCACAAAC+TGG | + | chr1.3:59360692-59360711 | None:intergenic | 55.0% | |
| CGGCCCCATTTAGTGGGATA+AGG | - | chr1.3:59361723-59361742 | MS.gene056095:intron | 55.0% | |
| TGTAGCCGGCCCCATTTAGT+GGG | - | chr1.3:59361717-59361736 | MS.gene056095:intron | 55.0% | |
| GCCGCTCTTCAATCCCGATC+AGG | - | chr1.3:59359571-59359590 | MS.gene056095:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 59359514 | 59362101 | 59359514 | ID=MS.gene056095 |
| chr1.3 | mRNA | 59359514 | 59362101 | 59359514 | ID=MS.gene056095.t1;Parent=MS.gene056095 |
| chr1.3 | exon | 59362023 | 59362101 | 59362023 | ID=MS.gene056095.t1.exon1;Parent=MS.gene056095.t1 |
| chr1.3 | CDS | 59362023 | 59362101 | 59362023 | ID=cds.MS.gene056095.t1;Parent=MS.gene056095.t1 |
| chr1.3 | exon | 59361203 | 59361345 | 59361203 | ID=MS.gene056095.t1.exon2;Parent=MS.gene056095.t1 |
| chr1.3 | CDS | 59361203 | 59361345 | 59361203 | ID=cds.MS.gene056095.t1;Parent=MS.gene056095.t1 |
| chr1.3 | exon | 59360833 | 59360932 | 59360833 | ID=MS.gene056095.t1.exon3;Parent=MS.gene056095.t1 |
| chr1.3 | CDS | 59360833 | 59360932 | 59360833 | ID=cds.MS.gene056095.t1;Parent=MS.gene056095.t1 |
| chr1.3 | exon | 59360370 | 59360631 | 59360370 | ID=MS.gene056095.t1.exon4;Parent=MS.gene056095.t1 |
| chr1.3 | CDS | 59360370 | 59360631 | 59360370 | ID=cds.MS.gene056095.t1;Parent=MS.gene056095.t1 |
| chr1.3 | exon | 59359514 | 59359622 | 59359514 | ID=MS.gene056095.t1.exon5;Parent=MS.gene056095.t1 |
| chr1.3 | CDS | 59359514 | 59359622 | 59359514 | ID=cds.MS.gene056095.t1;Parent=MS.gene056095.t1 |
| Gene Sequence |
| Protein sequence |
