Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40839.t1 | XP_003591148.1 | 98.8 | 168 | 2 | 0 | 1 | 168 | 1 | 168 | 3.80E-89 | 337.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40839.t1 | Q5J907 | 91.1 | 168 | 15 | 0 | 1 | 168 | 1 | 168 | 4.1e-84 | 312.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40839.t1 | G7I8P9 | 98.8 | 168 | 2 | 0 | 1 | 168 | 1 | 168 | 2.7e-89 | 337.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056064 | MS.gene40839 | 0.828538 | 8.50E-55 | -1.69E-46 |
| MS.gene056068 | MS.gene40839 | 0.837944 | 3.85E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40839.t1 | MTR_1g083350 | 98.810 | 168 | 2 | 0 | 1 | 168 | 1 | 168 | 3.34e-121 | 338 |
| MS.gene40839.t1 | MTR_1g083380 | 98.214 | 168 | 3 | 0 | 1 | 168 | 1 | 168 | 3.04e-120 | 336 |
| MS.gene40839.t1 | MTR_2g436620 | 85.714 | 168 | 23 | 1 | 1 | 168 | 1 | 167 | 7.39e-103 | 292 |
| MS.gene40839.t1 | MTR_1g083340 | 91.083 | 157 | 4 | 1 | 1 | 147 | 1 | 157 | 2.67e-98 | 280 |
| MS.gene40839.t1 | MTR_6g071090 | 81.366 | 161 | 29 | 1 | 1 | 161 | 1 | 160 | 2.20e-90 | 260 |
| MS.gene40839.t1 | MTR_2g436620 | 84.507 | 142 | 21 | 1 | 27 | 168 | 1 | 141 | 1.21e-83 | 243 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40839.t1 | AT3G16640 | 78.571 | 168 | 36 | 0 | 1 | 168 | 1 | 168 | 1.21e-96 | 276 |
| MS.gene40839.t1 | AT3G05540 | 79.882 | 169 | 32 | 2 | 1 | 168 | 1 | 168 | 8.11e-90 | 259 |
Find 38 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATATTGTTGACACTTTC+AGG | 0.110440 | 1.2:+59966936 | MS.gene40839:CDS |
| AATTGTAGGTCTTTGAGTTT+TGG | 0.259902 | 1.2:-59967100 | None:intergenic |
| TGTTGACACTTTCAGGCTTC+AGG | 0.310211 | 1.2:+59966943 | MS.gene40839:CDS |
| CGCAACCATGCTTGTTTACC+AGG | 0.349778 | 1.2:+59965612 | None:intergenic |
| CTACTTTGCTTATGGCTTGA+AGG | 0.363173 | 1.2:+59967302 | MS.gene40839:CDS |
| GATGAAACACATACAATTGT+AGG | 0.370851 | 1.2:-59967114 | None:intergenic |
| AATTCAGAACGGAATGCTTT+GGG | 0.372154 | 1.2:+59966677 | MS.gene40839:CDS |
| AAATTCAGAACGGAATGCTT+TGG | 0.379636 | 1.2:+59966676 | MS.gene40839:CDS |
| AACAATATCAACCACTTTGA+CGG | 0.381711 | 1.2:-59966924 | None:intergenic |
| GTTTACCAGGATCTTCTTAC+GGG | 0.390880 | 1.2:+59965625 | MS.gene40839:CDS |
| TGTTTACCAGGATCTTCTTA+CGG | 0.395300 | 1.2:+59965624 | MS.gene40839:CDS |
| GAACGGAATGCTTTGGGAAG+TGG | 0.412518 | 1.2:+59966683 | MS.gene40839:CDS |
| CCGTTCTGAATTTCCTTGTA+GGG | 0.428121 | 1.2:-59966666 | None:intergenic |
| AATTGCTTCTTATCAAAAGC+TGG | 0.428621 | 1.2:-59966971 | None:intergenic |
| TCCGTTCTGAATTTCCTTGT+AGG | 0.447921 | 1.2:-59966667 | None:intergenic |
| TAAGCAAAGTAGAGAAAAGT+TGG | 0.453692 | 1.2:-59967291 | None:intergenic |
| CCTTGTGTTTGCTTACTACA+AGG | 0.455642 | 1.2:+59967254 | MS.gene40839:CDS |
| TCGTCTCCACCCTCTGCAGA+AGG | 0.482179 | 1.2:-59966878 | None:intergenic |
| CTCTGACTCATTCCCCTACA+AGG | 0.486361 | 1.2:+59966653 | MS.gene40839:CDS |
| GCTTTGGGAAGTGGAAGGAA+AGG | 0.531642 | 1.2:+59966692 | MS.gene40839:CDS |
| GGTGCTAACCCTTCTGCAGA+GGG | 0.536319 | 1.2:+59966869 | MS.gene40839:CDS |
| CGTTCTGAATTTCCTTGTAG+GGG | 0.538126 | 1.2:-59966665 | None:intergenic |
| GTGTTTGCTTACTACAAGGA+TGG | 0.538874 | 1.2:+59967258 | MS.gene40839:CDS |
| GTTTACCCGTAAGAAGATCC+TGG | 0.555785 | 1.2:-59965630 | None:intergenic |
| GGGGAGAGCATGCATGATGA+TGG | 0.565967 | 1.2:+59967228 | MS.gene40839:CDS |
| CGTCTCCACCCTCTGCAGAA+GGG | 0.579433 | 1.2:-59966877 | None:intergenic |
| TGGTGCTAACCCTTCTGCAG+AGG | 0.598034 | 1.2:+59966868 | MS.gene40839:CDS |
| TTCTGCAGAGGGTGGAGACG+AGG | 0.598044 | 1.2:+59966880 | MS.gene40839:CDS |
| AAGATCCTGGTAAACAAGCA+TGG | 0.602746 | 1.2:-59965617 | None:intergenic |
| GCTAACCCTTCTGCAGAGGG+TGG | 0.604009 | 1.2:+59966872 | MS.gene40839:CDS |
| GTAGAGAAAAGTTGGATCAG+TGG | 0.605758 | 1.2:-59967283 | None:intergenic |
| GAGGGTGGAGACGAGGATGA+CGG | 0.612656 | 1.2:+59966887 | MS.gene40839:CDS |
| CCTTGTAGTAAGCAAACACA+AGG | 0.635355 | 1.2:-59967254 | None:intergenic |
| GTGGGTTGTTCAAGGAGCAG+TGG | 0.636439 | 1.2:+59966835 | MS.gene40839:intron |
| CCCTACAAGGAAATTCAGAA+CGG | 0.643529 | 1.2:+59966666 | MS.gene40839:CDS |
| GGAGCAGTGGATGTGAACAT+TGG | 0.696184 | 1.2:+59966848 | MS.gene40839:CDS |
| GGAATGCTTTGGGAAGTGGA+AGG | 0.706482 | 1.2:+59966687 | MS.gene40839:CDS |
| TGATGATCAAGCCGTCAAAG+TGG | 0.714042 | 1.2:+59966913 | MS.gene40839:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTTAATAGAATTTGT+TGG | + | chr1.2:59966088-59966107 | MS.gene40839:intron | 10.0% |
| !!! | TTTTTTTTTAACCAAATATT+AGG | + | chr1.2:59965753-59965772 | MS.gene40839:intron | 10.0% |
| !! | CTAATTTATGAACATATAAT+TGG | - | chr1.2:59966782-59966801 | None:intergenic | 15.0% |
| !!! | AAAAATGCATTTTTTTTGTT+AGG | - | chr1.2:59966211-59966230 | None:intergenic | 15.0% |
| !!! | AAAATTGCATTGTTTTTATT+AGG | + | chr1.2:59966363-59966382 | MS.gene40839:intron | 15.0% |
| !!! | AAATTGCATTGTTTTTATTA+GGG | + | chr1.2:59966364-59966383 | MS.gene40839:intron | 15.0% |
| !!! | TTTAGAGAAATATGTTTTTT+TGG | + | chr1.2:59966251-59966270 | MS.gene40839:intron | 15.0% |
| !! | AAAAAAAATAGATCAACCTT+GGG | - | chr1.2:59965937-59965956 | None:intergenic | 20.0% |
| !! | AAAACATATTTCTCTAAACA+TGG | - | chr1.2:59966249-59966268 | None:intergenic | 20.0% |
| !! | AAAAGTAAAAGAAACCTAAT+TGG | - | chr1.2:59965692-59965711 | None:intergenic | 20.0% |
| !! | AAAGTAAAAGAAACCTAATT+GGG | - | chr1.2:59965691-59965710 | None:intergenic | 20.0% |
| !! | AATATTAACAACCTTACAAA+AGG | - | chr1.2:59965886-59965905 | None:intergenic | 20.0% |
| !! | GAAAATATTAATTTAGCACT+TGG | - | chr1.2:59966462-59966481 | None:intergenic | 20.0% |
| !! | GATAATAATGAAAAACCTAA+AGG | - | chr1.2:59966062-59966081 | None:intergenic | 20.0% |
| !! | TAAAAAAAATAGATCAACCT+TGG | - | chr1.2:59965938-59965957 | None:intergenic | 20.0% |
| !! | TTAACATTCATCCTAATATT+TGG | - | chr1.2:59965767-59965786 | None:intergenic | 20.0% |
| !!! | AACTTTTTTGTAAAGATAAG+GGG | - | chr1.2:59966277-59966296 | None:intergenic | 20.0% |
| !!! | AATTGCATTGTTTTTATTAG+GGG | + | chr1.2:59966365-59966384 | MS.gene40839:intron | 20.0% |
| !!! | ATTAAGTTTTCTCTTTTTTG+TGG | + | chr1.2:59967164-59967183 | MS.gene40839:intron | 20.0% |
| !!! | ATTATCTTTCATCTCTTTTT+TGG | + | chr1.2:59967137-59967156 | MS.gene40839:intron | 20.0% |
| !!! | CAACTTTTTTGTAAAGATAA+GGG | - | chr1.2:59966278-59966297 | None:intergenic | 20.0% |
| !!! | TTATATACTAACCTTTTGTA+AGG | + | chr1.2:59965872-59965891 | MS.gene40839:intron | 20.0% |
| !!! | TTTTTCATAAACTTCACTTT+TGG | + | chr1.2:59965826-59965845 | MS.gene40839:intron | 20.0% |
| !!! | TTTTTTCCATTGTTTTTCAT+AGG | + | chr1.2:59965709-59965728 | MS.gene40839:intron | 20.0% |
| ! | AAAAAAATAGATCAACCTTG+GGG | - | chr1.2:59965936-59965955 | None:intergenic | 25.0% |
| ! | AATATTAATTTAGCACTTGG+TGG | - | chr1.2:59966459-59966478 | None:intergenic | 25.0% |
| ! | ACTATTATAGATCAAACTTG+TGG | + | chr1.2:59965997-59966016 | MS.gene40839:intron | 25.0% |
| ! | AGAATCCTTAATCAAGTATT+AGG | - | chr1.2:59966510-59966529 | None:intergenic | 25.0% |
| ! | CAAAAAAACTCAAAGATGAA+AGG | - | chr1.2:59965655-59965674 | None:intergenic | 25.0% |
| ! | CAAAATCCTATGAAAAACAA+TGG | - | chr1.2:59965718-59965737 | None:intergenic | 25.0% |
| ! | CACATTACACAATAAACTTT+AGG | - | chr1.2:59966805-59966824 | None:intergenic | 25.0% |
| ! | CTTAACCTAATACTTGATTA+AGG | + | chr1.2:59966502-59966521 | MS.gene40839:intron | 25.0% |
| ! | GTGGTAAAGTCATAAATTTA+AGG | - | chr1.2:59966440-59966459 | None:intergenic | 25.0% |
| ! | GTTAAGCTAATCATGTTTAA+GGG | - | chr1.2:59966488-59966507 | None:intergenic | 25.0% |
| ! | TTAAGCTAATCATGTTTAAG+GGG | - | chr1.2:59966487-59966506 | None:intergenic | 25.0% |
| !!! | AATGCATTTTTTTTGTTAGG+AGG | - | chr1.2:59966208-59966227 | None:intergenic | 25.0% |
| !!! | ATTGCATTGTTTTTATTAGG+GGG | + | chr1.2:59966366-59966385 | MS.gene40839:intron | 25.0% |
| !!! | CTTAAACTTCTGTGTTTTTT+GGG | + | chr1.2:59965963-59965982 | MS.gene40839:intron | 25.0% |
| !!! | GCAACTTTTTTGTAAAGATA+AGG | - | chr1.2:59966279-59966298 | None:intergenic | 25.0% |
| !!! | TTATTGTTTTTCATTGCTGA+TGG | + | chr1.2:59966567-59966586 | MS.gene40839:intron | 25.0% |
| AACAATATCAACCACTTTGA+CGG | - | chr1.2:59966927-59966946 | None:intergenic | 30.0% | |
| AATTGCTTCTTATCAAAAGC+TGG | - | chr1.2:59966974-59966993 | None:intergenic | 30.0% | |
| ACAGTATAGTTGGGAAAATT+AGG | + | chr1.2:59966335-59966354 | MS.gene40839:intron | 30.0% | |
| AGTATAGTTGGGAAAATTAG+GGG | + | chr1.2:59966337-59966356 | MS.gene40839:intron | 30.0% | |
| CAGTATAGTTGGGAAAATTA+GGG | + | chr1.2:59966336-59966355 | MS.gene40839:intron | 30.0% | |
| CCAAAAAACACAGAAGTTTA+AGG | - | chr1.2:59965965-59965984 | None:intergenic | 30.0% | |
| CTCTAAACATGGCAAAATTA+GGG | - | chr1.2:59966238-59966257 | None:intergenic | 30.0% | |
| GATCTATAATAGTGTGTGTT+TGG | - | chr1.2:59965990-59966009 | None:intergenic | 30.0% | |
| GATGAAACACATACAATTGT+AGG | - | chr1.2:59967117-59967136 | None:intergenic | 30.0% | |
| GGTTAAGCTAATCATGTTTA+AGG | - | chr1.2:59966489-59966508 | None:intergenic | 30.0% | |
| TAAGCAAAGTAGAGAAAAGT+TGG | - | chr1.2:59967294-59967313 | None:intergenic | 30.0% | |
| TCTAAACATGGCAAAATTAG+GGG | - | chr1.2:59966237-59966256 | None:intergenic | 30.0% | |
| TCTCTAAACATGGCAAAATT+AGG | - | chr1.2:59966239-59966258 | None:intergenic | 30.0% | |
| TTGATATTGTTGACACTTTC+AGG | + | chr1.2:59966936-59966955 | MS.gene40839:CDS | 30.0% | |
| ! | ACTTTTCTCTACTTTGCTTA+TGG | + | chr1.2:59967294-59967313 | MS.gene40839:CDS | 30.0% |
| ! | TTAAGGCTTAAATGCACTTT+TGG | - | chr1.2:59966423-59966442 | None:intergenic | 30.0% |
| ! | TTTTACTTTACCACCCAATT+AGG | + | chr1.2:59965675-59965694 | MS.gene40839:intron | 30.0% |
| !! | AATTGTAGGTCTTTGAGTTT+TGG | - | chr1.2:59967103-59967122 | None:intergenic | 30.0% |
| !! | ATTGTAGGTCTTTGAGTTTT+GGG | - | chr1.2:59967102-59967121 | None:intergenic | 30.0% |
| !!! | ATCAATGTTGCAGTTTTGTT+GGG | + | chr1.2:59967208-59967227 | MS.gene40839:intron | 30.0% |
| !!! | CCTTAAACTTCTGTGTTTTT+TGG | + | chr1.2:59965962-59965981 | MS.gene40839:intron | 30.0% |
| !!! | GTAATGTGATTTTTTGCAGT+GGG | + | chr1.2:59966817-59966836 | MS.gene40839:intron | 30.0% |
| !!! | TGTAATGTGATTTTTTGCAG+TGG | + | chr1.2:59966816-59966835 | MS.gene40839:intron | 30.0% |
| AAATTCAGAACGGAATGCTT+TGG | + | chr1.2:59966676-59966695 | MS.gene40839:CDS | 35.0% | |
| AATTCAGAACGGAATGCTTT+GGG | + | chr1.2:59966677-59966696 | MS.gene40839:CDS | 35.0% | |
| CTAAACATGGCAAAATTAGG+GGG | - | chr1.2:59966236-59966255 | None:intergenic | 35.0% | |
| CTTTGCTGATGAATTTCTGT+AGG | + | chr1.2:59966618-59966637 | MS.gene40839:intron | 35.0% | |
| GTAAAAGAAACCTAATTGGG+TGG | - | chr1.2:59965688-59965707 | None:intergenic | 35.0% | |
| GTATAGTTGGGAAAATTAGG+GGG | + | chr1.2:59966338-59966357 | MS.gene40839:intron | 35.0% | |
| TGTGACAGAGGGTTAAATTT+AGG | + | chr1.2:59966134-59966153 | MS.gene40839:intron | 35.0% | |
| TGTTCTGTGGTTTAACCTTT+AGG | + | chr1.2:59966044-59966063 | MS.gene40839:intron | 35.0% | |
| TGTTTACCAGGATCTTCTTA+CGG | + | chr1.2:59965624-59965643 | MS.gene40839:CDS | 35.0% | |
| ! | AGTTTTCTGTTTGTGTTCTG+TGG | + | chr1.2:59966031-59966050 | MS.gene40839:intron | 35.0% |
| !! | CATCAATGTTGCAGTTTTGT+TGG | + | chr1.2:59967207-59967226 | MS.gene40839:intron | 35.0% |
| !! | TTGAACAACTCTTGCTTTTC+TGG | - | chr1.2:59967046-59967065 | None:intergenic | 35.0% |
| !!! | AGTTGTTTTGTTTGTGACAG+AGG | + | chr1.2:59966122-59966141 | MS.gene40839:intron | 35.0% |
| !!! | GCAATTATGACCCCTTTTTT+GGG | + | chr1.2:59966297-59966316 | MS.gene40839:intron | 35.0% |
| !!! | GTTGTTTTGTTTGTGACAGA+GGG | + | chr1.2:59966123-59966142 | MS.gene40839:intron | 35.0% |
| !!! | TCAATGTTGCAGTTTTGTTG+GGG | + | chr1.2:59967209-59967228 | MS.gene40839:intron | 35.0% |
| !!! | TGCAATTATGACCCCTTTTT+TGG | + | chr1.2:59966296-59966315 | MS.gene40839:intron | 35.0% |
| ATTGCTACGATGGCAAACAT+AGG | + | chr1.2:59966394-59966413 | MS.gene40839:intron | 40.0% | |
| ATTGCTACGATGGCAAACAT+AGG | - | chr1.2:59966413-59966394 | None:intergenic | 40.0% | |
| CCCTACAAGGAAATTCAGAA+CGG | + | chr1.2:59966666-59966685 | MS.gene40839:CDS | 40.0% | |
| CCTTGTAGTAAGCAAACACA+AGG | - | chr1.2:59967257-59967276 | None:intergenic | 40.0% | |
| CCTTGTGTTTGCTTACTACA+AGG | + | chr1.2:59967254-59967273 | MS.gene40839:CDS | 40.0% | |
| CTACTTTGCTTATGGCTTGA+AGG | + | chr1.2:59967302-59967321 | MS.gene40839:CDS | 40.0% | |
| GTAGAGAAAAGTTGGATCAG+TGG | - | chr1.2:59967286-59967305 | None:intergenic | 40.0% | |
| GTGTTTGCTTACTACAAGGA+TGG | + | chr1.2:59967258-59967277 | MS.gene40839:CDS | 40.0% | |
| GTTTACCAGGATCTTCTTAC+GGG | + | chr1.2:59965625-59965644 | MS.gene40839:CDS | 40.0% | |
| TTGCTACGATGGCAAACATA+GGG | + | chr1.2:59966395-59966414 | MS.gene40839:intron | 40.0% | |
| TTGCTACGATGGCAAACATA+GGG | - | chr1.2:59966414-59966395 | None:intergenic | 40.0% | |
| ! | CCGTTCTGAATTTCCTTGTA+GGG | - | chr1.2:59966669-59966688 | None:intergenic | 40.0% |
| ! | CGTTCTGAATTTCCTTGTAG+GGG | - | chr1.2:59966668-59966687 | None:intergenic | 40.0% |
| ! | TCCGTTCTGAATTTCCTTGT+AGG | - | chr1.2:59966670-59966689 | None:intergenic | 40.0% |
| !! | GAGTTTTCTTTTTTGCCCCA+AGG | + | chr1.2:59965918-59965937 | MS.gene40839:intron | 40.0% |
| !!! | TTTTTGCAGTGGGTTGTTCA+AGG | + | chr1.2:59966827-59966846 | MS.gene40839:intron | 40.0% |
| GGAGGTCAAAATTGCTACGA+TGG | - | chr1.2:59966190-59966209 | None:intergenic | 45.0% | |
| GTTTACCCGTAAGAAGATCC+TGG | - | chr1.2:59965633-59965652 | None:intergenic | 45.0% | |
| TGATGATCAAGCCGTCAAAG+TGG | + | chr1.2:59966913-59966932 | MS.gene40839:CDS | 45.0% | |
| TGCTACGATGGCAAACATAG+GGG | + | chr1.2:59966396-59966415 | MS.gene40839:intron | 45.0% | |
| TGTTGACACTTTCAGGCTTC+AGG | + | chr1.2:59966943-59966962 | MS.gene40839:CDS | 45.0% | |
| !!! | GGTCTTTGAGTTTTGGGAGA+AGG | - | chr1.2:59967096-59967115 | None:intergenic | 45.0% |
| !!! | ATTCTATTAAATTAAAATTT+TGG | - | chr1.2:59966084-59966103 | None:intergenic | 5.0% |
| CCGCCACATGTCCCAAAAAA+GGG | - | chr1.2:59966311-59966330 | None:intergenic | 50.0% | |
| CGCCACATGTCCCAAAAAAG+GGG | - | chr1.2:59966310-59966329 | None:intergenic | 50.0% | |
| CTCTGACTCATTCCCCTACA+AGG | + | chr1.2:59966653-59966672 | MS.gene40839:CDS | 50.0% | |
| GCTACGATGGCAAACATAGG+GGG | + | chr1.2:59966397-59966416 | MS.gene40839:intron | 50.0% | |
| GGAGCAGTGGATGTGAACAT+TGG | + | chr1.2:59966848-59966867 | MS.gene40839:CDS | 50.0% | |
| GGCGGCTTCACAGTATAGTT+GGG | + | chr1.2:59966326-59966345 | MS.gene40839:intron | 50.0% | |
| GGGAAGTGGAAGGAAAGGTT+TGG | + | chr1.2:59966697-59966716 | MS.gene40839:intron | 50.0% | |
| GGGGGTCAAAATTGCTACGA+TGG | + | chr1.2:59966384-59966403 | MS.gene40839:intron | 50.0% | |
| TGGCGGCTTCACAGTATAGT+TGG | + | chr1.2:59966325-59966344 | MS.gene40839:intron | 50.0% | |
| !! | GAACGGAATGCTTTGGGAAG+TGG | + | chr1.2:59966683-59966702 | MS.gene40839:CDS | 50.0% |
| !! | GCTTTGGGAAGTGGAAGGAA+AGG | + | chr1.2:59966692-59966711 | MS.gene40839:CDS | 50.0% |
| !! | GGAATGCTTTGGGAAGTGGA+AGG | + | chr1.2:59966687-59966706 | MS.gene40839:CDS | 50.0% |
| !!! | CCCTTTTTTGGGACATGTGG+CGG | + | chr1.2:59966308-59966327 | MS.gene40839:intron | 50.0% |
| !!! | GACCCCTTTTTTGGGACATG+TGG | + | chr1.2:59966305-59966324 | MS.gene40839:intron | 50.0% |
| GCCGCCACATGTCCCAAAAA+AGG | - | chr1.2:59966312-59966331 | None:intergenic | 55.0% | |
| GGTGCTAACCCTTCTGCAGA+GGG | + | chr1.2:59966869-59966888 | MS.gene40839:CDS | 55.0% | |
| ! | GGGGAGAGCATGCATGATGA+TGG | + | chr1.2:59967228-59967247 | MS.gene40839:CDS | 55.0% |
| ! | GTGGGTTGTTCAAGGAGCAG+TGG | + | chr1.2:59966835-59966854 | MS.gene40839:intron | 55.0% |
| ! | TGGTGCTAACCCTTCTGCAG+AGG | + | chr1.2:59966868-59966887 | MS.gene40839:CDS | 55.0% |
| CGTCTCCACCCTCTGCAGAA+GGG | - | chr1.2:59966880-59966899 | None:intergenic | 60.0% | |
| GAGGGTGGAGACGAGGATGA+CGG | + | chr1.2:59966887-59966906 | MS.gene40839:CDS | 60.0% | |
| GCTAACCCTTCTGCAGAGGG+TGG | + | chr1.2:59966872-59966891 | MS.gene40839:CDS | 60.0% | |
| TCGTCTCCACCCTCTGCAGA+AGG | - | chr1.2:59966881-59966900 | None:intergenic | 60.0% | |
| TTCTGCAGAGGGTGGAGACG+AGG | + | chr1.2:59966880-59966899 | MS.gene40839:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 59965619 | 59967338 | 59965619 | ID=MS.gene40839 |
| chr1.2 | mRNA | 59965619 | 59967338 | 59965619 | ID=MS.gene40839.t1;Parent=MS.gene40839 |
| chr1.2 | exon | 59965619 | 59965646 | 59965619 | ID=MS.gene40839.t1.exon1;Parent=MS.gene40839.t1 |
| chr1.2 | CDS | 59965619 | 59965646 | 59965619 | ID=cds.MS.gene40839.t1;Parent=MS.gene40839.t1 |
| chr1.2 | exon | 59966640 | 59966713 | 59966640 | ID=MS.gene40839.t1.exon2;Parent=MS.gene40839.t1 |
| chr1.2 | CDS | 59966640 | 59966713 | 59966640 | ID=cds.MS.gene40839.t1;Parent=MS.gene40839.t1 |
| chr1.2 | exon | 59966836 | 59967122 | 59966836 | ID=MS.gene40839.t1.exon3;Parent=MS.gene40839.t1 |
| chr1.2 | CDS | 59966836 | 59967122 | 59966836 | ID=cds.MS.gene40839.t1;Parent=MS.gene40839.t1 |
| chr1.2 | exon | 59967221 | 59967338 | 59967221 | ID=MS.gene40839.t1.exon4;Parent=MS.gene40839.t1 |
| chr1.2 | CDS | 59967221 | 59967338 | 59967221 | ID=cds.MS.gene40839.t1;Parent=MS.gene40839.t1 |
| Gene Sequence |
| Protein sequence |
