AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene40905

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40905.t1 MTR_8g069975 90.238 1178 76 3 1 1140 1 1177 0.0 2196
MS.gene40905.t1 MTR_1g060740 90.306 1176 77 3 1 1140 1 1175 0.0 2177
MS.gene40905.t1 MTR_2g030490 81.942 1174 177 2 1 1140 1 1173 0.0 1981
MS.gene40905.t1 MTR_4g116860 32.310 1238 683 33 10 1130 28 1227 5.15e-168 538
MS.gene40905.t1 MTR_3g105390 28.462 1307 735 30 13 1140 44 1329 1.10e-134 449
MS.gene40905.t1 MTR_7g118350 30.069 868 480 22 6 764 198 1047 1.79e-99 348
MS.gene40905.t1 MTR_7g118350 31.884 414 218 13 776 1140 1140 1538 2.71e-47 186
MS.gene40905.t1 MTR_7g118350 32.587 715 386 16 6 633 198 903 1.81e-95 336
MS.gene40905.t1 MTR_7g118350 31.884 414 218 13 776 1140 1179 1577 3.38e-47 186
MS.gene40905.t1 MTR_1g063410 84.298 121 17 1 810 928 1 121 9.25e-63 209
MS.gene40905.t1 MTR_8g077780 85.938 64 9 0 1057 1120 4 67 6.36e-33 122
MS.gene40905.t1 MTR_1g063400 90.000 60 6 0 725 784 1 60 3.31e-30 117
MS.gene40905.t1 MTR_1g063400 70.930 86 20 2 856 936 45 130 1.08e-27 110
MS.gene40905.t1 MTR_8g077770 95.455 44 2 0 1097 1140 8 51 1.10e-21 90.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40905.t1 AT3G03300 51.482 1181 508 12 15 1140 15 1185 0.0 1182
MS.gene40905.t1 AT3G03300 51.482 1181 508 12 15 1140 15 1185 0.0 1182
MS.gene40905.t1 AT3G03300 49.910 1116 494 12 80 1140 66 1171 0.0 1080
MS.gene40905.t1 AT3G03300 48.012 981 446 11 215 1140 1 972 0.0 902
MS.gene40905.t1 AT5G20320 31.575 1232 691 35 19 1130 119 1318 2.44e-151 495
MS.gene40905.t1 AT5G20320 30.763 1232 687 36 19 1130 119 1304 7.08e-142 468
MS.gene40905.t1 AT5G20320 30.427 1124 631 33 127 1130 1 1093 2.17e-122 411
MS.gene40905.t1 AT1G01040 33.187 684 378 13 24 633 249 927 4.19e-97 341
MS.gene40905.t1 AT1G01040 33.505 388 209 14 794 1140 1216 1595 2.56e-44 176
MS.gene40905.t1 AT1G01040 33.187 684 378 13 24 633 249 927 4.34e-97 341
MS.gene40905.t1 AT1G01040 33.505 388 209 14 794 1140 1215 1594 2.65e-44 176
MS.gene40905.t1 AT3G43920 31.456 515 320 10 26 525 46 542 1.05e-59 225
MS.gene40905.t1 AT3G43920 30.410 536 284 18 675 1129 696 1223 3.41e-42 169
MS.gene40905.t1 AT3G43920 31.323 514 312 10 26 525 46 532 1.75e-58 221
MS.gene40905.t1 AT3G43920 30.410 536 284 18 675 1129 686 1213 3.57e-42 169
MS.gene40905.t1 AT3G43920 31.323 514 312 10 26 525 46 532 2.58e-58 221
MS.gene40905.t1 AT3G43920 30.410 536 284 18 675 1129 686 1213 5.01e-42 169
MS.gene40905.t1 AT3G43920 31.008 516 315 10 24 525 43 531 4.01e-58 220
MS.gene40905.t1 AT3G43920 30.410 536 284 18 675 1129 685 1212 3.63e-42 169
MS.gene40905.t1 AT3G43920 28.063 506 300 11 26 525 46 493 2.17e-44 176
MS.gene40905.t1 AT3G43920 30.410 536 284 18 675 1129 647 1174 5.00e-42 169
MS.gene40905.t1 AT3G43920 30.410 536 284 18 675 1129 468 995 4.91e-42 168
MS.gene40905.t1 AT3G43920 26.471 272 186 5 260 525 51 314 8.45e-18 90.1

Find 215 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATACCTTTCGACTTAAT+TGG 0.117695 1.4:-43897728 None:intergenic
GATGGCTGCATTGTTGTTTA+TGG 0.170640 1.4:+43902832 MS.gene40905:CDS
GTGTCATAGCTTCTACTAAT+AGG 0.233844 1.4:-43902982 None:intergenic
TTGGAATTGAAACTTTCTTA+TGG 0.238573 1.4:+43898630 MS.gene40905:CDS
GGTTGATGTCGGTATGAATT+TGG 0.267952 1.4:-43898114 None:intergenic
TTTGGTTCCCAGAGTTGTTT+TGG 0.271181 1.4:+43896785 MS.gene40905:CDS
GAGAGATGCGTGTTGACTTA+TGG 0.281045 1.4:+43896997 MS.gene40905:CDS
GCTTGGATGAGCTTGGTATT+TGG 0.286041 1.4:+43898486 MS.gene40905:CDS
TATGAAACTGAAAATGATAA+AGG 0.288527 1.4:+43897447 MS.gene40905:CDS
AAAATTATTGTCACGGATAT+AGG 0.293840 1.4:+43901345 MS.gene40905:CDS
TGGTATTTGGTTGGCTTTGA+AGG 0.305816 1.4:+43898499 MS.gene40905:CDS
CCTCTTGAAGTACTCGTTTA+GGG 0.307747 1.4:+43902952 MS.gene40905:CDS
CTCCAAAGTGTGTTGTCTTA+TGG 0.308593 1.4:+43898883 MS.gene40905:CDS
TTATACCTTTCGACTTAATT+GGG 0.310174 1.4:-43897727 None:intergenic
TTGAAAGTTGGAACGTATTC+GGG 0.318316 1.4:+43896975 MS.gene40905:CDS
TTTGAAAGTTGGAACGTATT+CGG 0.319521 1.4:+43896974 MS.gene40905:CDS
CCAGGAATGATCCAGGTCTT+AGG 0.321777 1.4:-43902665 None:intergenic
CTACATCACCACTGGTATAA+TGG 0.322551 1.4:+43901058 MS.gene40905:CDS
TGCATTGTTGTTTATGGATT+GGG 0.327698 1.4:+43902838 MS.gene40905:CDS
TGGAATTGAAACTTTCTTAT+GGG 0.329221 1.4:+43898631 MS.gene40905:CDS
CACCACTGGTATAATGGAAT+TGG 0.334969 1.4:+43901064 MS.gene40905:CDS
CCCTCTTGAAGTACTCGTTT+AGG 0.336879 1.4:+43902951 MS.gene40905:CDS
AGATGTTCAAAGTTGCAATT+TGG 0.339610 1.4:+43899398 MS.gene40905:CDS
AAATTCAGATTATATATTGA+TGG 0.341929 1.4:+43899488 MS.gene40905:CDS
CTGATCCGGAGAGAGATTAA+TGG 0.349134 1.4:-43900631 None:intergenic
TTCCCTTCCATGTGAAAGTC+TGG 0.350073 1.4:+43899750 MS.gene40905:CDS
ACACTCTTCCATTTGCTAGA+AGG 0.352535 1.4:+43896540 MS.gene40905:CDS
CGCAAATATATGCACTGAAA+AGG 0.359492 1.4:+43900974 MS.gene40905:CDS
CTGACATTAACTAGATTATC+TGG 0.368987 1.4:-43902917 None:intergenic
AGGTTGCAGTTCTATACTTC+CGG 0.369900 1.4:+43902194 MS.gene40905:CDS
TGACAATATGAATTCCGATA+TGG 0.372541 1.4:+43898844 MS.gene40905:CDS
CCTAAGACCTGGATCATTCC+TGG 0.375576 1.4:+43902665 MS.gene40905:CDS
TCAGATGCTCAGTGGACTAT+TGG 0.378892 1.4:+43898821 MS.gene40905:intron
GCTTGTAGAGGACAACTCTT+AGG 0.382466 1.4:-43900081 None:intergenic
GAACCATAATAAAACAGATA+TGG 0.384099 1.4:+43900803 MS.gene40905:CDS
AATCACACTGATTTGAAAGT+TGG 0.390605 1.4:+43896963 MS.gene40905:CDS
ACTTATGGGATGGAGCTATA+TGG 0.393336 1.4:+43897012 MS.gene40905:CDS
CGATTAGAGAAATACCTTGA+TGG 0.397087 1.4:+43899691 MS.gene40905:CDS
TGGACGGCTAAATTCATTGC+AGG 0.397646 1.4:+43899181 MS.gene40905:CDS
ACAGTCATGATACAAGCATA+TGG 0.404430 1.4:-43897511 None:intergenic
TGTCATAGCTTCTACTAATA+GGG 0.405885 1.4:-43902981 None:intergenic
GACCTTTCATTACGAGTCTC+TGG 0.406455 1.4:+43902041 MS.gene40905:CDS
GGATGAATGCCATCATGCTT+CGG 0.406755 1.4:+43897480 MS.gene40905:CDS
CTGCATTGTTGTTTATGGAT+TGG 0.408048 1.4:+43902837 MS.gene40905:CDS
ATTATATATTGATGGTTAAG+AGG 0.408731 1.4:+43899496 MS.gene40905:CDS
TGACGTACCAAGATGCTATC+AGG 0.409119 1.4:+43903024 MS.gene40905:CDS
GAAACTAACCTTCTAGCAAA+TGG 0.409274 1.4:-43896548 None:intergenic
AAACATCTTGATTTAACTCC+AGG 0.409456 1.4:-43902683 None:intergenic
TGCAGGCACTTAACTATAGA+TGG 0.411510 1.4:-43900945 None:intergenic
TGTTTCCGACAAATTCTGTT+TGG 0.411833 1.4:+43900830 MS.gene40905:CDS
GCTTCTTCAACGACTATAGA+AGG 0.413189 1.4:-43900204 None:intergenic
GCCGTCCAGCTATTGTATTT+CGG 0.414273 1.4:-43899166 None:intergenic
CAATGTAAGGAGAAGGCTTT+CGG 0.416611 1.4:-43896755 None:intergenic
TAAAGAGTTCTGACTGATAT+TGG 0.424884 1.4:-43901585 None:intergenic
AGATTCCAAGTTAATGTCCT+TGG 0.425969 1.4:+43900771 MS.gene40905:CDS
TTGATTTGTACTCCTCATAA+TGG 0.428119 1.4:+43901029 MS.gene40905:CDS
GCTGCCATCAATTGCTATAG+AGG 0.429867 1.4:+43900881 MS.gene40905:CDS
TGAGCATCAACGCCTACTTA+AGG 0.430754 1.4:+43901301 MS.gene40905:CDS
GATGAATGCCATCATGCTTC+GGG 0.431075 1.4:+43897481 MS.gene40905:CDS
CATTAATCTCTCTCCGGATC+AGG 0.438177 1.4:+43900632 MS.gene40905:CDS
GGATGAGCTTGGTATTTGGT+TGG 0.438920 1.4:+43898490 MS.gene40905:CDS
AGGAAACACCATCTGTTGAT+TGG 0.443910 1.4:+43900901 MS.gene40905:CDS
ACCACGTACAAGAATTACTT+TGG 0.446488 1.4:+43901125 MS.gene40905:CDS
GTTTCCTCTATAGCAATTGA+TGG 0.448825 1.4:-43900885 None:intergenic
TTGCATTCTGGCACGGCCAC+GGG 0.451741 1.4:-43899466 None:intergenic
GATGTTGTCGAAGCACTAAT+TGG 0.451753 1.4:+43902785 MS.gene40905:CDS
TATCACCATCAATTAAGATC+TGG 0.452100 1.4:+43897665 MS.gene40905:CDS
AGAGATGCGTGTTGACTTAT+GGG 0.452868 1.4:+43896998 MS.gene40905:CDS
AAGCAAGAAAGCAATATTGC+AGG 0.453026 1.4:-43897412 None:intergenic
CAATATTGCTTTCTTGCTTG+AGG 0.453823 1.4:+43897416 MS.gene40905:CDS
CTGAGAAACCAAAACAACTC+TGG 0.454431 1.4:-43896793 None:intergenic
AGCATTGACTTGCCTCTCAT+AGG 0.458294 1.4:-43902891 None:intergenic
AACGCTGCCCTCTGTAAGTT+AGG 0.458460 1.4:+43902174 MS.gene40905:CDS
TGCTTCCGAAATACAATAGC+TGG 0.458902 1.4:+43899161 MS.gene40905:CDS
CTTAACTATAGATGGATGTA+TGG 0.461160 1.4:-43900937 None:intergenic
ATCCAGGTCTTAGGATCAAA+AGG 0.463588 1.4:-43902656 None:intergenic
CCAGTCTGTTTGTCCCACCT+TGG 0.463601 1.4:-43900045 None:intergenic
ACTCAGCAGTTTAAAACAAC+AGG 0.467712 1.4:+43898202 MS.gene40905:CDS
TTTGACATGTGTTTCGATAG+AGG 0.469578 1.4:+43900576 MS.gene40905:CDS
AGCTATATGGAAAGAAGAAA+TGG 0.473703 1.4:+43897025 MS.gene40905:CDS
GAAATTCAGCTCTGGAAGTA+GGG 0.475148 1.4:+43901090 MS.gene40905:CDS
TGAAAATACTATAGTGTACT+TGG 0.476812 1.4:+43896671 MS.gene40905:CDS
AACTGCACACGGTGGGAGAT+GGG 0.476843 1.4:-43899434 None:intergenic
GGAAATTCAGCTCTGGAAGT+AGG 0.482090 1.4:+43901089 MS.gene40905:CDS
ATCTTCCAAACAGAATTTGT+CGG 0.484608 1.4:-43900835 None:intergenic
GGAAGATTTCCGTATGGGAT+TGG 0.486834 1.4:+43899255 MS.gene40905:CDS
GCAAATATATGCACTGAAAA+GGG 0.488018 1.4:+43900975 MS.gene40905:CDS
GCTAAATTCATTGCAGGAAA+CGG 0.489595 1.4:+43899187 MS.gene40905:CDS
AAACTGCACACGGTGGGAGA+TGG 0.492448 1.4:-43899435 None:intergenic
TAGCTATCAACTTGAAGCAT+TGG 0.492580 1.4:+43896635 MS.gene40905:intron
GAAGCAGAGGTGGAGGACTT+TGG 0.493395 1.4:+43900222 MS.gene40905:CDS
ATATATTTGCGTCATGATGC+AGG 0.494969 1.4:-43900962 None:intergenic
TTTGCATTCTGGCACGGCCA+CGG 0.495341 1.4:-43899467 None:intergenic
AACTTTCTTATGGGGCAACT+CGG 0.495606 1.4:+43898640 MS.gene40905:CDS
AATGACTTTAATGAATTCAA+AGG 0.497516 1.4:+43897914 MS.gene40905:CDS
TGATAGCATCTTGGTACGTC+AGG 0.497659 1.4:-43903022 None:intergenic
TACTATGGAAGAAGCTCTGA+TGG 0.499109 1.4:+43896481 None:intergenic
TAAGAAAGTTTCAATTCCAA+TGG 0.501006 1.4:-43898627 None:intergenic
GCAGAGTCTTTATCATCCAT+TGG 0.502401 1.4:+43898611 MS.gene40905:CDS
TGATACCAGATCTTAATTGA+TGG 0.503318 1.4:-43897670 None:intergenic
GAATTCCAAGGACATTAACT+TGG 0.503882 1.4:-43900776 None:intergenic
TATGAATTCCGATATGGAAA+GGG 0.507618 1.4:+43898850 MS.gene40905:CDS
ATGATTATAGAGCAAAGTTC+AGG 0.508350 1.4:-43901558 None:intergenic
CGTTGAAGAAGCAGAGGTGG+AGG 0.511466 1.4:+43900215 MS.gene40905:CDS
TGCTCACGACTTCCAGCAGA+TGG 0.512811 1.4:+43899865 MS.gene40905:CDS
ATGTAGGTACGGCCATTATG+AGG 0.513243 1.4:-43901041 None:intergenic
CTGCAACGTTACCTACCATC+TGG 0.515180 1.4:+43898707 MS.gene40905:CDS
CAATAAACGAACCCATCTGC+TGG 0.515270 1.4:-43899877 None:intergenic
GCATTGACTTGCCTCTCATA+GGG 0.517021 1.4:-43902890 None:intergenic
TGTTTGTCCCACCTTGGAGT+CGG 0.517592 1.4:-43900039 None:intergenic
TTGTGTATTCTAGCAAGCTA+AGG 0.518385 1.4:+43896932 MS.gene40905:intron
GGAATTGAAACTTTCTTATG+GGG 0.520849 1.4:+43898632 MS.gene40905:CDS
TTCCAGACTTTCACATGGAA+GGG 0.524151 1.4:-43899752 None:intergenic
TTTCCAGACTTTCACATGGA+AGG 0.524614 1.4:-43899753 None:intergenic
TGCAAACGACTTCATATGAC+TGG 0.526634 1.4:+43900159 MS.gene40905:CDS
GTCCATAAGACAACACACTT+TGG 0.533821 1.4:-43898885 None:intergenic
ACTTTCTTATGGGGCAACTC+GGG 0.535148 1.4:+43898641 MS.gene40905:CDS
TGGACTGTCTACTTGAGTAC+AGG 0.536804 1.4:+43898903 MS.gene40905:CDS
TAATAGAGAGATACCTGATC+CGG 0.536893 1.4:-43900645 None:intergenic
CCAAGGTGGGACAAACAGAC+TGG 0.537567 1.4:+43900045 MS.gene40905:CDS
TAGAATTATTACCAGATGGT+AGG 0.537601 1.4:-43898718 None:intergenic
TATGGTTCATAAGAATTCCA+AGG 0.537739 1.4:-43900788 None:intergenic
ATGAATTCCGATATGGAAAG+GGG 0.539964 1.4:+43898851 MS.gene40905:CDS
ATTGTGGAAGATTTCCGTAT+GGG 0.541625 1.4:+43899250 MS.gene40905:CDS
CAGTCATGATACAAGCATAT+GGG 0.542112 1.4:-43897510 None:intergenic
CTGAGTTGCAGGGCTTCATA+CGG 0.542348 1.4:+43902627 MS.gene40905:intron
CATTATACCAGTGGTGATGT+AGG 0.543098 1.4:-43901057 None:intergenic
TCATCATTTCCACACCATCA+AGG 0.543310 1.4:-43899705 None:intergenic
ATTGGATGGAAATTCAGCTC+TGG 0.544572 1.4:+43901082 MS.gene40905:CDS
ATTGGTGCATTCCTTAGCAC+TGG 0.544699 1.4:+43902803 MS.gene40905:CDS
TTTAACTCCAGGAATGATCC+AGG 0.545492 1.4:-43902672 None:intergenic
TGAGAAACCAAAACAACTCT+GGG 0.548494 1.4:-43896792 None:intergenic
ATATGAATTCCGATATGGAA+AGG 0.550071 1.4:+43898849 MS.gene40905:CDS
CCATCTCACTGCCAGTGCTA+AGG 0.552518 1.4:-43902814 None:intergenic
AGGATCCATTAATCTCTCTC+CGG 0.553141 1.4:+43900626 MS.gene40905:CDS
AATGTTTGAATACCGTTCTG+AGG 0.553441 1.4:-43901696 None:intergenic
ACTATAGTGTACTTGGAGAC+TGG 0.554168 1.4:+43896678 MS.gene40905:CDS
GGCCGTACCTACATCACCAC+TGG 0.554879 1.4:+43901050 MS.gene40905:CDS
GAACGGTATTCAAACATTCA+AGG 0.560167 1.4:+43901701 MS.gene40905:CDS
CTACAAGCTATTAATGTACA+AGG 0.562706 1.4:+43900096 MS.gene40905:CDS
GCGACATCAATTCTTGAGGA+GGG 0.562810 1.4:+43899372 MS.gene40905:CDS
TATACCTTTCGACTTAATTG+GGG 0.563997 1.4:-43897726 None:intergenic
ATAAGTACCTGATAGCATCT+TGG 0.566427 1.4:-43903031 None:intergenic
TGCGACATCAATTCTTGAGG+AGG 0.566813 1.4:+43899371 MS.gene40905:CDS
TACCAGTGGTGATGTAGGTA+CGG 0.567224 1.4:-43901052 None:intergenic
ATGTTTGAATACCGTTCTGA+GGG 0.568112 1.4:-43901695 None:intergenic
CCTTAGCACTGGCAGTGAGA+TGG 0.568439 1.4:+43902814 MS.gene40905:CDS
GTGGAAATAGAAAATTGAAA+CGG 0.568558 1.4:+43902750 MS.gene40905:CDS
AAAGCATTTCGCAATATGCA+AGG 0.568948 1.4:-43901008 None:intergenic
TGTTGCGACATCAATTCTTG+AGG 0.578958 1.4:+43899368 MS.gene40905:CDS
AAAACAGCAATGTAAGGAGA+AGG 0.580283 1.4:-43896762 None:intergenic
CTCCAGAGACTCGTAATGAA+AGG 0.581199 1.4:-43902043 None:intergenic
AATTGTGGAAGATTTCCGTA+TGG 0.582391 1.4:+43899249 MS.gene40905:CDS
TCTGTAAACTTGAGATACAA+AGG 0.583293 1.4:+43900606 MS.gene40905:CDS
GTGTACTTGGAGACTGGTTG+TGG 0.584648 1.4:+43896684 MS.gene40905:CDS
AGTCGTTGAAGAAGCAGAGG+TGG 0.585129 1.4:+43900212 MS.gene40905:CDS
ATCCAATTCCATTATACCAG+TGG 0.585353 1.4:-43901066 None:intergenic
TTGTTGTTTATGGATTGGGT+TGG 0.585689 1.4:+43902842 MS.gene40905:CDS
TACGAGTCTCTGGAGACTCT+AGG 0.587847 1.4:+43902051 MS.gene40905:CDS
GGTGTCTACCCGAAGCATGA+TGG 0.593103 1.4:-43897489 None:intergenic
ACTGGTATAATGGAATTGGA+TGG 0.595366 1.4:+43901068 MS.gene40905:CDS
AGGGTCTTCTTAGTGTGAAG+AGG 0.595542 1.4:+43902136 MS.gene40905:CDS
TCAAGTCTATGCATGATCGA+TGG 0.597874 1.4:-43901624 None:intergenic
CATAAGACAACACACTTTGG+AGG 0.597904 1.4:-43898882 None:intergenic
GGGTCTTCTTAGTGTGAAGA+GGG 0.599511 1.4:+43902137 MS.gene40905:CDS
AAACGTGTCTTGCCTTAAGT+AGG 0.605192 1.4:-43901313 None:intergenic
TCCAAAGTAATTCTTGTACG+TGG 0.610483 1.4:-43901126 None:intergenic
AGAGAAATACCTTGATGGTG+TGG 0.612535 1.4:+43899696 MS.gene40905:CDS
ATAGTTATCCAATCAACAGA+TGG 0.613060 1.4:-43900909 None:intergenic
GCATCCCCAATTAAGTCGAA+AGG 0.614532 1.4:+43897722 MS.gene40905:CDS
AAGTGTTCAAAAGAATCTCA+AGG 0.618291 1.4:-43899138 None:intergenic
AGTAGCATACCAATCCCATA+CGG 0.621707 1.4:-43899264 None:intergenic
CCCTAAACGAGTACTTCAAG+AGG 0.623201 1.4:-43902952 None:intergenic
TTGAATCATTGCCCTCAGAA+CGG 0.625111 1.4:+43901684 MS.gene40905:CDS
GGTACTTTAAACCGACTCCA+AGG 0.625242 1.4:+43900028 MS.gene40905:intron
TGTACATTAATAGCTTGTAG+AGG 0.630935 1.4:-43900093 None:intergenic
TGTACAAAACTGCACACGGT+GGG 0.634760 1.4:-43899441 None:intergenic
TGGTGTGGAAATGATGAGGA+AGG 0.635071 1.4:+43899711 MS.gene40905:CDS
AAGCATTTCGCAATATGCAA+GGG 0.638323 1.4:-43901007 None:intergenic
AATGACCACAAAATCATGCA+AGG 0.640263 1.4:+43902017 MS.gene40905:CDS
AGAAGAAATGGCGAAACATG+AGG 0.640665 1.4:+43897037 MS.gene40905:CDS
GTAGCTTCGAAGAAGCATGA+TGG 0.641178 1.4:-43896721 None:intergenic
AACTGCAACCTAACTTACAG+AGG 0.641984 1.4:-43902182 None:intergenic
CTTTAAACCGACTCCAAGGT+GGG 0.642046 1.4:+43900032 MS.gene40905:CDS
TCAGCTCTGGAAGTAGGGGA+TGG 0.642371 1.4:+43901095 MS.gene40905:CDS
TTCAGGAGGTAACTCAACAA+AGG 0.643388 1.4:-43901541 None:intergenic
CTTCTTAATCAGATGCTCAG+TGG 0.643751 1.4:+43898813 MS.gene40905:intron
TTAATATTACACCCTATGAG+AGG 0.644503 1.4:+43902879 MS.gene40905:CDS
AAATTCAGCTCTGGAAGTAG+GGG 0.646236 1.4:+43901091 MS.gene40905:CDS
TAGCTTCTACTAATAGGGAA+CGG 0.647970 1.4:-43902976 None:intergenic
CAGCTTCAGTGCTTGCAACA+CGG 0.648294 1.4:-43899801 None:intergenic
ATTATAGAGCAAAGTTCAGG+AGG 0.649119 1.4:-43901555 None:intergenic
GTAAATTACAAAACCAAACA+AGG 0.655341 1.4:+43899212 MS.gene40905:CDS
GCTCACGACTTCCAGCAGAT+GGG 0.656571 1.4:+43899866 MS.gene40905:CDS
TCCGAAATACAATAGCTGGA+CGG 0.658610 1.4:+43899165 MS.gene40905:CDS
CTGCACACAAGAAAATAGCA+AGG 0.661382 1.4:+43898441 MS.gene40905:CDS
TATAGTCGTTGAAGAAGCAG+AGG 0.662562 1.4:+43900209 MS.gene40905:CDS
TCACTTTCCAGACTTTCACA+TGG 0.663176 1.4:-43899757 None:intergenic
ATGCGTGTTGACTTATGGGA+TGG 0.663752 1.4:+43897002 MS.gene40905:CDS
GGACTGTACAAAACTGCACA+CGG 0.663950 1.4:-43899445 None:intergenic
TCACGGATATAGGCAATCGA+AGG 0.665463 1.4:+43901355 MS.gene40905:CDS
ATGTATGAAAATCATCACGA+GGG 0.667060 1.4:+43902117 MS.gene40905:CDS
TGGAAGGGAAGAATGATGCA+AGG 0.668793 1.4:-43899737 None:intergenic
ACGTTGCAGTGTCAGAATAG+CGG 0.672337 1.4:-43898693 None:intergenic
CTGTTATCAGAAGCAGATCG+TGG 0.672450 1.4:+43896514 MS.gene40905:CDS
ACTGCAACCTAACTTACAGA+GGG 0.674782 1.4:-43902181 None:intergenic
CCTAAACGAGTACTTCAAGA+GGG 0.675242 1.4:-43902951 None:intergenic
TGTAAGGAGAAGGCTTTCGG+AGG 0.676430 1.4:-43896752 None:intergenic
ACTTTAAACCGACTCCAAGG+TGG 0.678688 1.4:+43900031 MS.gene40905:CDS
TATAGGCAATCGAAGGACAG+AGG 0.683656 1.4:+43901362 MS.gene40905:CDS
TGAATTCCGATATGGAAAGG+GGG 0.687315 1.4:+43898852 MS.gene40905:CDS
TTGATGGTGTGGAAATGATG+AGG 0.709727 1.4:+43899707 MS.gene40905:CDS
TATGTATGAAAATCATCACG+AGG 0.715521 1.4:+43902116 MS.gene40905:CDS
CTGTACAAAACTGCACACGG+TGG 0.717943 1.4:-43899442 None:intergenic
TTAGTAGAAGCTATGACACA+CGG 0.720222 1.4:+43902986 MS.gene40905:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATAAATAAATTAAA+AGG - chr1.4:43899971-43899990 None:intergenic 0.0%
!! ACGTAATATTAAAAATTTAA+AGG - chr1.4:43900290-43900309 None:intergenic 10.0%
!! CAATTAAAAAAAACAATTAA+AGG - chr1.4:43900673-43900692 None:intergenic 10.0%
!!! GATGATTTTTTTTTTTTTTT+TGG + chr1.4:43896610-43896629 MS.gene40905:intron 10.0%
!! AAATTCAGATTATATATTGA+TGG + chr1.4:43899488-43899507 MS.gene40905:CDS 15.0%
!! CAAAAAAAAAAAATCTTACA+GGG + chr1.4:43900361-43900380 MS.gene40905:intron 15.0%
!! TTAGAAGAATATTTCATATA+TGG - chr1.4:43897159-43897178 None:intergenic 15.0%
!!! AATGATAAAGGTTTTAATAA+TGG + chr1.4:43897459-43897478 MS.gene40905:CDS 15.0%
!!! ATTTTTTACTTTGTTTTTTG+CGG + chr1.4:43901397-43901416 MS.gene40905:intron 15.0%
!! AAAGAGCAATATTAATTAGT+CGG - chr1.4:43897302-43897321 None:intergenic 20.0%
!! AAATCTTAAGGTTCATTAAA+CGG - chr1.4:43899925-43899944 None:intergenic 20.0%
!! AACTCTTTACATTCATTATT+CGG - chr1.4:43901900-43901919 None:intergenic 20.0%
!! AATGAATAGAAACTTTCTAT+AGG - chr1.4:43897756-43897775 None:intergenic 20.0%
!! AATGACTTTAATGAATTCAA+AGG + chr1.4:43897914-43897933 MS.gene40905:CDS 20.0%
!! AATTAACCGCATAATATATA+AGG - chr1.4:43901213-43901232 None:intergenic 20.0%
!! ACTAATCTATTAAAAAGAGA+GGG - chr1.4:43902232-43902251 None:intergenic 20.0%
!! AGTTAATAATCAACTATGAT+TGG - chr1.4:43898346-43898365 None:intergenic 20.0%
!! ATTAAGAATTCTGTATCTAT+TGG + chr1.4:43901749-43901768 MS.gene40905:intron 20.0%
!! ATTGATTATGTTGTATTGTT+TGG + chr1.4:43902528-43902547 MS.gene40905:intron 20.0%
!! CCATATACTAATTCTATAAA+TGG + chr1.4:43900330-43900349 MS.gene40905:intron 20.0%
!! CCATTTATAGAATTAGTATA+TGG - chr1.4:43900333-43900352 None:intergenic 20.0%
!! GAAAAATCAAAATCAAATTG+TGG + chr1.4:43899234-43899253 MS.gene40905:CDS 20.0%
!! GCAAAAAAAAAAAATCTTAC+AGG + chr1.4:43900360-43900379 MS.gene40905:intron 20.0%
!! TATGAAACTGAAAATGATAA+AGG + chr1.4:43897447-43897466 MS.gene40905:CDS 20.0%
!! TCAGTAACAAAATTTAAGAA+TGG - chr1.4:43898294-43898313 None:intergenic 20.0%
!! TCTAAACTTATTACCTATTA+AGG - chr1.4:43901781-43901800 None:intergenic 20.0%
!! TGAGAACATAATACTTATTA+CGG - chr1.4:43902488-43902507 None:intergenic 20.0%
!!! AAGGAAACATTTTAATCTAT+AGG + chr1.4:43899335-43899354 MS.gene40905:intron 20.0%
!!! ACTTTTATTTTTTGATACAG+CGG + chr1.4:43897851-43897870 MS.gene40905:intron 20.0%
!!! AGTTGATTATTAACTTGAAA+TGG + chr1.4:43898351-43898370 MS.gene40905:intron 20.0%
!!! ATTATATATTGATGGTTAAG+AGG + chr1.4:43899496-43899515 MS.gene40905:CDS 20.0%
!!! CAAAAGTAAGTAATTTTTTG+TGG + chr1.4:43901149-43901168 MS.gene40905:intron 20.0%
!!! CGGTTAATTTATCTATTTTA+GGG + chr1.4:43901224-43901243 MS.gene40905:intron 20.0%
!!! GAACAAAATATAGAAGTTTT+AGG - chr1.4:43899638-43899657 None:intergenic 20.0%
!!! TATATTGTGTTACTATTGTT+TGG - chr1.4:43900447-43900466 None:intergenic 20.0%
!!! TTTCCATATCTGTTTTATTA+TGG - chr1.4:43900809-43900828 None:intergenic 20.0%
! AAAATTATTGTCACGGATAT+AGG + chr1.4:43901345-43901364 MS.gene40905:CDS 25.0%
! AACAAAGTTGTACTTGAAAA+CGG + chr1.4:43901867-43901886 MS.gene40905:intron 25.0%
! AAGCAAACATTACAATGAAA+AGG - chr1.4:43896585-43896604 None:intergenic 25.0%
! AATTTACTATAGTACCACTT+AGG + chr1.4:43899535-43899554 MS.gene40905:intron 25.0%
! ACATTACAATGAAAAGGTTT+AGG - chr1.4:43896579-43896598 None:intergenic 25.0%
! AGATACAGAATTCTTAATTC+TGG - chr1.4:43901747-43901766 None:intergenic 25.0%
! ATTGCGATCAAAATATACTA+CGG - chr1.4:43897559-43897578 None:intergenic 25.0%
! ATTGTAGAATTATTACCAGA+TGG - chr1.4:43898725-43898744 None:intergenic 25.0%
! ATTTGCTTATTACAATACAG+TGG - chr1.4:43899302-43899321 None:intergenic 25.0%
! CCAGTAAAAAATTATTGTCA+CGG + chr1.4:43901338-43901357 MS.gene40905:CDS 25.0%
! CTAATTAATATTGCTCTTTC+TGG + chr1.4:43897303-43897322 MS.gene40905:intron 25.0%
! GAACCATAATAAAACAGATA+TGG + chr1.4:43900803-43900822 MS.gene40905:CDS 25.0%
! GACTAATCTATTAAAAAGAG+AGG - chr1.4:43902233-43902252 None:intergenic 25.0%
! GCAAAAGAAAACAAATCTTA+AGG - chr1.4:43899937-43899956 None:intergenic 25.0%
! GTAAATTACAAAACCAAACA+AGG + chr1.4:43899212-43899231 MS.gene40905:CDS 25.0%
! GTGGAAATAGAAAATTGAAA+CGG + chr1.4:43902750-43902769 MS.gene40905:CDS 25.0%
! TAAGAAAGTTTCAATTCCAA+TGG - chr1.4:43898630-43898649 None:intergenic 25.0%
! TATTGTAAAAGAGATGAAAG+TGG - chr1.4:43896830-43896849 None:intergenic 25.0%
! TGAAAATACTATAGTGTACT+TGG + chr1.4:43896671-43896690 MS.gene40905:CDS 25.0%
! TGGAAAAGTCAAAACAATTA+TGG + chr1.4:43900715-43900734 MS.gene40905:intron 25.0%
! TGGAATTGAAACTTTCTTAT+GGG + chr1.4:43898631-43898650 MS.gene40905:CDS 25.0%
! TTATACCTTTCGACTTAATT+GGG - chr1.4:43897730-43897749 None:intergenic 25.0%
! TTCATTAAACGGAGAAAAAA+TGG - chr1.4:43899914-43899933 None:intergenic 25.0%
! TTGGAATTGAAACTTTCTTA+TGG + chr1.4:43898630-43898649 MS.gene40905:CDS 25.0%
! TTTAAAGATATTTGCACTGA+TGG + chr1.4:43901962-43901981 MS.gene40905:intron 25.0%
! TTTATACCTTTCGACTTAAT+TGG - chr1.4:43897731-43897750 None:intergenic 25.0%
!! ATAATCTGAATTTTGCATTC+TGG - chr1.4:43899481-43899500 None:intergenic 25.0%
!! ATCTGTTTTACTGAAATTAC+AGG + chr1.4:43899059-43899078 MS.gene40905:intron 25.0%
!! ATTAGAAGAGACAATTTTCA+AGG + chr1.4:43902709-43902728 MS.gene40905:CDS 25.0%
!! ATTTTGTTCCAAAATTACAG+TGG + chr1.4:43899649-43899668 MS.gene40905:intron 25.0%
!! GCGGTTAATTTATCTATTTT+AGG + chr1.4:43901223-43901242 MS.gene40905:intron 25.0%
!! TTACATTTTCATCGAAAAAC+TGG - chr1.4:43898148-43898167 None:intergenic 25.0%
!! TTAGAAGAGACAATTTTCAA+GGG + chr1.4:43902710-43902729 MS.gene40905:CDS 25.0%
!! TTTTAAACTGCTGAGTTTAT+TGG - chr1.4:43898198-43898217 None:intergenic 25.0%
!! TTTTCATTGTAATGTTTGCT+TGG + chr1.4:43896584-43896603 MS.gene40905:intron 25.0%
!! TTTTGTTCCAAAATTACAGT+GGG + chr1.4:43899650-43899669 MS.gene40905:intron 25.0%
!!! CTATTGGTTTTTTCCTTAAT+AGG + chr1.4:43901765-43901784 MS.gene40905:intron 25.0%
!!! GATTTTGATTTTTCCTTGTT+TGG - chr1.4:43899228-43899247 None:intergenic 25.0%
!!! TATTTTGTTTTCTGAATCGA+AGG + chr1.4:43898061-43898080 MS.gene40905:intron 25.0%
!!! TCTATATGTTCATTGTTTTG+AGG + chr1.4:43899604-43899623 MS.gene40905:intron 25.0%
AAAAACTATTGATGTGAGCA+TGG - chr1.4:43899008-43899027 None:intergenic 30.0%
AAACACGCACTAATATAGTT+TGG - chr1.4:43898319-43898338 None:intergenic 30.0%
AAACATCTTGATTTAACTCC+AGG - chr1.4:43902686-43902705 None:intergenic 30.0%
AACGGAGAAAAAATGGAATA+AGG - chr1.4:43899907-43899926 None:intergenic 30.0%
AACTTGGCTGATTATTATGT+CGG + chr1.4:43902381-43902400 MS.gene40905:intron 30.0%
AAGTGTTCAAAAGAATCTCA+AGG - chr1.4:43899141-43899160 None:intergenic 30.0%
AAGTTATGTACCACTTGAAT+TGG + chr1.4:43900410-43900429 MS.gene40905:intron 30.0%
AATTCAAGTGGTACATAACT+TGG - chr1.4:43900411-43900430 None:intergenic 30.0%
ACCAAAAAAACAGCAATGTA+AGG - chr1.4:43896771-43896790 None:intergenic 30.0%
ACGGAGAAAAAATGGAATAA+GGG - chr1.4:43899906-43899925 None:intergenic 30.0%
AGATGTTCAAAGTTGCAATT+TGG + chr1.4:43899398-43899417 MS.gene40905:CDS 30.0%
AGCTATATGGAAAGAAGAAA+TGG + chr1.4:43897025-43897044 MS.gene40905:CDS 30.0%
ATAACAATGACGTATTCTAG+CGG - chr1.4:43897086-43897105 None:intergenic 30.0%
ATAGTTATCCAATCAACAGA+TGG - chr1.4:43900912-43900931 None:intergenic 30.0%
ATATGAATTCCGATATGGAA+AGG + chr1.4:43898849-43898868 MS.gene40905:CDS 30.0%
ATCTTCCAAACAGAATTTGT+CGG - chr1.4:43900838-43900857 None:intergenic 30.0%
ATGATTATAGAGCAAAGTTC+AGG - chr1.4:43901561-43901580 None:intergenic 30.0%
ATGTATGAAAATCATCACGA+GGG + chr1.4:43902117-43902136 MS.gene40905:CDS 30.0%
CCTATAATATGCTTCTAACT+TGG + chr1.4:43902365-43902384 MS.gene40905:intron 30.0%
CTAAATAGAACTTTCCTAAG+TGG - chr1.4:43899552-43899571 None:intergenic 30.0%
CTACAAGCTATTAATGTACA+AGG + chr1.4:43900096-43900115 MS.gene40905:CDS 30.0%
CTAGTGCCTTATATATTATG+CGG + chr1.4:43901204-43901223 MS.gene40905:intron 30.0%
CTGACATTAACTAGATTATC+TGG - chr1.4:43902920-43902939 None:intergenic 30.0%
CTTAACTATAGATGGATGTA+TGG - chr1.4:43900940-43900959 None:intergenic 30.0%
GCAAATATATGCACTGAAAA+GGG + chr1.4:43900975-43900994 MS.gene40905:CDS 30.0%
GCAAATGCAGTTACTTATTA+AGG + chr1.4:43899316-43899335 MS.gene40905:intron 30.0%
GGAATTGAAACTTTCTTATG+GGG + chr1.4:43898632-43898651 MS.gene40905:CDS 30.0%
TACTAACCAAAAAAAGCAAG+AGG - chr1.4:43901939-43901958 None:intergenic 30.0%
TACTCACTAAGAAAAGATCA+AGG - chr1.4:43901425-43901444 None:intergenic 30.0%
TAGAATTATTACCAGATGGT+AGG - chr1.4:43898721-43898740 None:intergenic 30.0%
TATACCTTTCGACTTAATTG+GGG - chr1.4:43897729-43897748 None:intergenic 30.0%
TATCACCATCAATTAAGATC+TGG + chr1.4:43897665-43897684 MS.gene40905:CDS 30.0%
TATGAATTCCGATATGGAAA+GGG + chr1.4:43898850-43898869 MS.gene40905:CDS 30.0%
TATGGTTCATAAGAATTCCA+AGG - chr1.4:43900791-43900810 None:intergenic 30.0%
TATGTATGAAAATCATCACG+AGG + chr1.4:43902116-43902135 MS.gene40905:CDS 30.0%
TCTGTAAACTTGAGATACAA+AGG + chr1.4:43900606-43900625 MS.gene40905:CDS 30.0%
TGACAATATGAATTCCGATA+TGG + chr1.4:43898844-43898863 MS.gene40905:CDS 30.0%
TGATACCAGATCTTAATTGA+TGG - chr1.4:43897673-43897692 None:intergenic 30.0%
TGTCATAGCTTCTACTAATA+GGG - chr1.4:43902984-43903003 None:intergenic 30.0%
TTAATATTACACCCTATGAG+AGG + chr1.4:43902879-43902898 MS.gene40905:CDS 30.0%
TTTAGAAGTTTGCAGAAGAT+CGG + chr1.4:43902324-43902343 MS.gene40905:intron 30.0%
TTTGAAAGTTGGAACGTATT+CGG + chr1.4:43896974-43896993 MS.gene40905:CDS 30.0%
TTTGTTCCAAAATTACAGTG+GGG + chr1.4:43899651-43899670 MS.gene40905:intron 30.0%
! AATGAGATGCATAGTTTTTG+TGG + chr1.4:43899093-43899112 MS.gene40905:CDS 30.0%
! ATCGAAAAACTGGAATTTTG+GGG - chr1.4:43898138-43898157 None:intergenic 30.0%
! ATCTTTTACACAAAAGAACC+TGG - chr1.4:43900755-43900774 None:intergenic 30.0%
! ATGCATAGTTTTTGTGGAAA+GGG + chr1.4:43899099-43899118 MS.gene40905:CDS 30.0%
! CATCGAAAAACTGGAATTTT+GGG - chr1.4:43898139-43898158 None:intergenic 30.0%
! CCAAGTTAGAAGCATATTAT+AGG - chr1.4:43902368-43902387 None:intergenic 30.0%
! GTATCTGCATTTTGCATTTT+AGG + chr1.4:43901984-43902003 MS.gene40905:intron 30.0%
! TAAAGAGTTCTGACTGATAT+TGG - chr1.4:43901588-43901607 None:intergenic 30.0%
! TCATCGAAAAACTGGAATTT+TGG - chr1.4:43898140-43898159 None:intergenic 30.0%
! TGAATGTAAAGAGTTCCTTT+TGG + chr1.4:43901905-43901924 MS.gene40905:intron 30.0%
! TGTACATTAATAGCTTGTAG+AGG - chr1.4:43900096-43900115 None:intergenic 30.0%
! TTGTCTATTTCTTGTTTCAC+TGG - chr1.4:43897209-43897228 None:intergenic 30.0%
!! AATCACACTGATTTGAAAGT+TGG + chr1.4:43896963-43896982 MS.gene40905:CDS 30.0%
!! TAGAAGAGACAATTTTCAAG+GGG + chr1.4:43902711-43902730 MS.gene40905:CDS 30.0%
!! TGCATTGTTGTTTATGGATT+GGG + chr1.4:43902838-43902857 MS.gene40905:CDS 30.0%
!! TTGATTTGTACTCCTCATAA+TGG + chr1.4:43901029-43901048 MS.gene40905:CDS 30.0%
!!! ATGGTTTGTTTTCATTTTCC+AGG + chr1.4:43900734-43900753 MS.gene40905:intron 30.0%
!!! ATTTTTTGTGGTAGATGTTC+AGG + chr1.4:43901161-43901180 MS.gene40905:intron 30.0%
!!! CCGTGACAATAATTTTTTAC+TGG - chr1.4:43901341-43901360 None:intergenic 30.0%
!!! TCAACTTTGTTTTACGTGAT+AGG + chr1.4:43898586-43898605 MS.gene40905:intron 30.0%
!!! TCCTTACATTGCTGTTTTTT+TGG + chr1.4:43896767-43896786 MS.gene40905:CDS 30.0%
!!! TTTTTTGTGGTAGATGTTCA+GGG + chr1.4:43901162-43901181 MS.gene40905:intron 30.0%
AAAAAATCACAGCAGCAGAA+GGG - chr1.4:43898531-43898550 None:intergenic 35.0%
AAAACAGCAATGTAAGGAGA+AGG - chr1.4:43896765-43896784 None:intergenic 35.0%
AAATTCACCGAGAAGATAAG+GGG - chr1.4:43898035-43898054 None:intergenic 35.0%
AAGCAAGAAAGCAATATTGC+AGG - chr1.4:43897415-43897434 None:intergenic 35.0%
AAGCATTTCGCAATATGCAA+GGG - chr1.4:43901010-43901029 None:intergenic 35.0%
AATGACCACAAAATCATGCA+AGG + chr1.4:43902017-43902036 MS.gene40905:CDS 35.0%
AATGTTTGAATACCGTTCTG+AGG - chr1.4:43901699-43901718 None:intergenic 35.0%
AATTGTGGAAGATTTCCGTA+TGG + chr1.4:43899249-43899268 MS.gene40905:CDS 35.0%
ACAGTCATGATACAAGCATA+TGG - chr1.4:43897514-43897533 None:intergenic 35.0%
ACCACGTACAAGAATTACTT+TGG + chr1.4:43901125-43901144 MS.gene40905:CDS 35.0%
ACTGACACTGATAAATAAGC+TGG - chr1.4:43897800-43897819 None:intergenic 35.0%
AGAAATTCACCGAGAAGATA+AGG - chr1.4:43898037-43898056 None:intergenic 35.0%
ATAACTTTGTCTCTTGCATC+AGG - chr1.4:43899575-43899594 None:intergenic 35.0%
ATACGATTCACCAATTCAAG+TGG - chr1.4:43900423-43900442 None:intergenic 35.0%
ATATATTCCTCTGAGTTGCA+GGG + chr1.4:43902617-43902636 MS.gene40905:intron 35.0%
ATATATTTGCGTCATGATGC+AGG - chr1.4:43900965-43900984 None:intergenic 35.0%
ATCCAATTCCATTATACCAG+TGG - chr1.4:43901069-43901088 None:intergenic 35.0%
ATGAATTCCGATATGGAAAG+GGG + chr1.4:43898851-43898870 MS.gene40905:CDS 35.0%
ATGTTTGAATACCGTTCTGA+GGG - chr1.4:43901698-43901717 None:intergenic 35.0%
ATTATAGAGCAAAGTTCAGG+AGG - chr1.4:43901558-43901577 None:intergenic 35.0%
ATTGTGGAAGATTTCCGTAT+GGG + chr1.4:43899250-43899269 MS.gene40905:CDS 35.0%
ATTTATCCCCCTTATCTTCT+CGG + chr1.4:43898025-43898044 MS.gene40905:intron 35.0%
CAATATTGCTTTCTTGCTTG+AGG + chr1.4:43897416-43897435 MS.gene40905:CDS 35.0%
CAGTCATGATACAAGCATAT+GGG - chr1.4:43897513-43897532 None:intergenic 35.0%
CGACCTTGTCGAAAAATATT+CGG + chr1.4:43897886-43897905 MS.gene40905:CDS 35.0%
CGATTAGAGAAATACCTTGA+TGG + chr1.4:43899691-43899710 MS.gene40905:CDS 35.0%
CGCAAATATATGCACTGAAA+AGG + chr1.4:43900974-43900993 MS.gene40905:CDS 35.0%
GAAACTAACCTTCTAGCAAA+TGG - chr1.4:43896551-43896570 None:intergenic 35.0%
GAAATTCACCGAGAAGATAA+GGG - chr1.4:43898036-43898055 None:intergenic 35.0%
GAACGGTATTCAAACATTCA+AGG + chr1.4:43901701-43901720 MS.gene40905:CDS 35.0%
GCTAAATTCATTGCAGGAAA+CGG + chr1.4:43899187-43899206 MS.gene40905:CDS 35.0%
GGGACAAAAATATATACTCG+TGG + chr1.4:43902731-43902750 MS.gene40905:CDS 35.0%
GGTATTCAAACATTCAAGGT+GGG + chr1.4:43901705-43901724 MS.gene40905:intron 35.0%
GTGTCATAGCTTCTACTAAT+AGG - chr1.4:43902985-43903004 None:intergenic 35.0%
GTTTCCTCTATAGCAATTGA+TGG - chr1.4:43900888-43900907 None:intergenic 35.0%
TAATAGAGAGATACCTGATC+CGG - chr1.4:43900648-43900667 None:intergenic 35.0%
TACGTGTTTATTGTGTTCAG+TGG + chr1.4:43897997-43898016 MS.gene40905:intron 35.0%
TAGCTATCAACTTGAAGCAT+TGG + chr1.4:43896635-43896654 MS.gene40905:intron 35.0%
TAGCTTCTACTAATAGGGAA+CGG - chr1.4:43902979-43902998 None:intergenic 35.0%
TATATATTCCTCTGAGTTGC+AGG + chr1.4:43902616-43902635 MS.gene40905:intron 35.0%
TCCAAAGTAATTCTTGTACG+TGG - chr1.4:43901129-43901148 None:intergenic 35.0%
TGAGAAACCAAAACAACTCT+GGG - chr1.4:43896795-43896814 None:intergenic 35.0%
TGAGAGTCTTTGCATTTCAA+TGG + chr1.4:43897060-43897079 MS.gene40905:intron 35.0%
TGGAATTCATTCCTTTCATG+TGG + chr1.4:43897323-43897342 MS.gene40905:intron 35.0%
TGTTTCCGACAAATTCTGTT+TGG + chr1.4:43900830-43900849 MS.gene40905:CDS 35.0%
TTAGTAGAAGCTATGACACA+CGG + chr1.4:43902986-43903005 MS.gene40905:CDS 35.0%
TTGAAAGTTGGAACGTATTC+GGG + chr1.4:43896975-43896994 MS.gene40905:CDS 35.0%
TTGTGTATTCTAGCAAGCTA+AGG + chr1.4:43896932-43896951 MS.gene40905:intron 35.0%
TTTGACATGTGTTTCGATAG+AGG + chr1.4:43900576-43900595 MS.gene40905:CDS 35.0%
! AAAGCATTTCGCAATATGCA+AGG - chr1.4:43901011-43901030 None:intergenic 35.0%
! ACTCAGCAGTTTAAAACAAC+AGG + chr1.4:43898202-43898221 MS.gene40905:CDS 35.0%
! ACTGGTATAATGGAATTGGA+TGG + chr1.4:43901068-43901087 MS.gene40905:CDS 35.0%
! GATGCATAGTTTTTGTGGAA+AGG + chr1.4:43899098-43899117 MS.gene40905:CDS 35.0%
! GTAATGCTTTTGAATGTACC+AGG + chr1.4:43897375-43897394 MS.gene40905:intron 35.0%
! TACTCACTCAATGTTTTGCT+TGG + chr1.4:43898469-43898488 MS.gene40905:CDS 35.0%
!! ACTTTTGTTTGATTGTGTGC+AGG + chr1.4:43897637-43897656 MS.gene40905:intron 35.0%
!! CTGCATTGTTGTTTATGGAT+TGG + chr1.4:43902837-43902856 MS.gene40905:CDS 35.0%
!! GCATTTTGCATTTTAGGTCT+TGG + chr1.4:43901990-43902009 MS.gene40905:intron 35.0%
!! TTGCCGAATATTTTTCGACA+AGG - chr1.4:43897892-43897911 None:intergenic 35.0%
!! TTGTTGTTTATGGATTGGGT+TGG + chr1.4:43902842-43902861 MS.gene40905:CDS 35.0%
!!! CTTTCTCCTCTTGCTTTTTT+TGG + chr1.4:43901930-43901949 MS.gene40905:intron 35.0%
AAACGTGTCTTGCCTTAAGT+AGG - chr1.4:43901316-43901335 None:intergenic 40.0%
AACTGCAACCTAACTTACAG+AGG - chr1.4:43902185-43902204 None:intergenic 40.0%
AACTTTCTTATGGGGCAACT+CGG + chr1.4:43898640-43898659 MS.gene40905:CDS 40.0%
AATTCACCGAGAAGATAAGG+GGG - chr1.4:43898034-43898053 None:intergenic 40.0%
ACCTGGGAGTTTAGACAAAA+TGG - chr1.4:43900011-43900030 None:intergenic 40.0%
ACTATAGTGTACTTGGAGAC+TGG + chr1.4:43896678-43896697 MS.gene40905:CDS 40.0%
ACTGCAACCTAACTTACAGA+GGG - chr1.4:43902184-43902203 None:intergenic 40.0%
ACTTATGGGATGGAGCTATA+TGG + chr1.4:43897012-43897031 MS.gene40905:CDS 40.0%
AGAAGAAATGGCGAAACATG+AGG + chr1.4:43897037-43897056 MS.gene40905:CDS 40.0%
AGAGATTGAAGCCACATGAA+AGG - chr1.4:43897337-43897356 None:intergenic 40.0%
AGGAAACACCATCTGTTGAT+TGG + chr1.4:43900901-43900920 MS.gene40905:CDS 40.0%
AGGATCCATTAATCTCTCTC+CGG + chr1.4:43900626-43900645 MS.gene40905:CDS 40.0%
AGGGAATGAACCATATGATG+TGG + chr1.4:43900380-43900399 MS.gene40905:intron 40.0%
AGGTTGCAGTTCTATACTTC+CGG + chr1.4:43902194-43902213 MS.gene40905:CDS 40.0%
AGTAGCATACCAATCCCATA+CGG - chr1.4:43899267-43899286 None:intergenic 40.0%
ATCCAGGTCTTAGGATCAAA+AGG - chr1.4:43902659-43902678 None:intergenic 40.0%
ATGTGGCTTCAATCTCTTGT+TGG + chr1.4:43897340-43897359 MS.gene40905:intron 40.0%
ATTGGATGGAAATTCAGCTC+TGG + chr1.4:43901082-43901101 MS.gene40905:CDS 40.0%
CAAAAAATCACAGCAGCAGA+AGG - chr1.4:43898532-43898551 None:intergenic 40.0%
CAAGAGGAGAAAGTTCCAAA+AGG - chr1.4:43901923-43901942 None:intergenic 40.0%
CAATGTAAGGAGAAGGCTTT+CGG - chr1.4:43896758-43896777 None:intergenic 40.0%
CATAAGACAACACACTTTGG+AGG - chr1.4:43898885-43898904 None:intergenic 40.0%
CCAAAGTCCAAATGTTTGCA+TGG - chr1.4:43901448-43901467 None:intergenic 40.0%
CCATGCAAACATTTGGACTT+TGG + chr1.4:43901445-43901464 MS.gene40905:intron 40.0%
CCTAAACGAGTACTTCAAGA+GGG - chr1.4:43902954-43902973 None:intergenic 40.0%
CCTGGGAGTTTAGACAAAAT+GGG - chr1.4:43900010-43900029 None:intergenic 40.0%
CGGTATTCAAACATTCAAGG+TGG + chr1.4:43901704-43901723 MS.gene40905:intron 40.0%
CTACATCACCACTGGTATAA+TGG + chr1.4:43901058-43901077 MS.gene40905:CDS 40.0%
CTCCAAAGTGTGTTGTCTTA+TGG + chr1.4:43898883-43898902 MS.gene40905:CDS 40.0%
CTGAGAAACCAAAACAACTC+TGG - chr1.4:43896796-43896815 None:intergenic 40.0%
CTGCACACAAGAAAATAGCA+AGG + chr1.4:43898441-43898460 MS.gene40905:CDS 40.0%
CTTCTTAATCAGATGCTCAG+TGG + chr1.4:43898813-43898832 MS.gene40905:intron 40.0%
CTTGGTTGATCCACATCATA+TGG - chr1.4:43900393-43900412 None:intergenic 40.0%
GCAGAGTCTTTATCATCCAT+TGG + chr1.4:43898611-43898630 MS.gene40905:CDS 40.0%
GCTTCTTCAACGACTATAGA+AGG - chr1.4:43900207-43900226 None:intergenic 40.0%
GTCCATAAGACAACACACTT+TGG - chr1.4:43898888-43898907 None:intergenic 40.0%
GTGAGTACCATGCAAACATT+TGG + chr1.4:43901438-43901457 MS.gene40905:intron 40.0%
TATAGTCGTTGAAGAAGCAG+AGG + chr1.4:43900209-43900228 MS.gene40905:CDS 40.0%
TCAAGTCTATGCATGATCGA+TGG - chr1.4:43901627-43901646 None:intergenic 40.0%
TCACTTTCCAGACTTTCACA+TGG - chr1.4:43899760-43899779 None:intergenic 40.0%
TCATCATTTCCACACCATCA+AGG - chr1.4:43899708-43899727 None:intergenic 40.0%
TCCGAAATACAATAGCTGGA+CGG + chr1.4:43899165-43899184 MS.gene40905:CDS 40.0%
TCTGACATATTCGCAAGTGT+TGG + chr1.4:43900695-43900714 MS.gene40905:intron 40.0%
TGAATTCCGATATGGAAAGG+GGG + chr1.4:43898852-43898871 MS.gene40905:CDS 40.0%
TGCAAACGACTTCATATGAC+TGG + chr1.4:43900159-43900178 MS.gene40905:CDS 40.0%
TGCAGGCACTTAACTATAGA+TGG - chr1.4:43900948-43900967 None:intergenic 40.0%
TGCTTCCGAAATACAATAGC+TGG + chr1.4:43899161-43899180 MS.gene40905:CDS 40.0%
TGTTGCGACATCAATTCTTG+AGG + chr1.4:43899368-43899387 MS.gene40905:CDS 40.0%
TTCAGGAGGTAACTCAACAA+AGG - chr1.4:43901544-43901563 None:intergenic 40.0%
TTCCAGACTTTCACATGGAA+GGG - chr1.4:43899755-43899774 None:intergenic 40.0%
TTGAATCATTGCCCTCAGAA+CGG + chr1.4:43901684-43901703 MS.gene40905:CDS 40.0%
TTTAACTCCAGGAATGATCC+AGG - chr1.4:43902675-43902694 None:intergenic 40.0%
TTTCCAGACTTTCACATGGA+AGG - chr1.4:43899756-43899775 None:intergenic 40.0%
! ACACTCTTCCATTTGCTAGA+AGG + chr1.4:43896540-43896559 MS.gene40905:CDS 40.0%
! ATGTTTTGCTTGGATGAGCT+TGG + chr1.4:43898479-43898498 MS.gene40905:CDS 40.0%
! CACCACTGGTATAATGGAAT+TGG + chr1.4:43901064-43901083 MS.gene40905:CDS 40.0%
! CATTATACCAGTGGTGATGT+AGG - chr1.4:43901060-43901079 None:intergenic 40.0%
! CCATGTCTGAAACTCAGAAA+AGG - chr1.4:43901266-43901285 None:intergenic 40.0%
! CCTCTTGAAGTACTCGTTTA+GGG + chr1.4:43902952-43902971 MS.gene40905:CDS 40.0%
! CCTTTTCTGAGTTTCAGACA+TGG + chr1.4:43901263-43901282 MS.gene40905:intron 40.0%
! CTGAATCCCCACTGTAATTT+TGG - chr1.4:43899660-43899679 None:intergenic 40.0%
! CTGAATTTTGCATTCTGGCA+CGG - chr1.4:43899476-43899495 None:intergenic 40.0%
! GATGTTGTCGAAGCACTAAT+TGG + chr1.4:43902785-43902804 MS.gene40905:CDS 40.0%
! GGTTGATGTCGGTATGAATT+TGG - chr1.4:43898117-43898136 None:intergenic 40.0%
!! AAATTCAGCTCTGGAAGTAG+GGG + chr1.4:43901091-43901110 MS.gene40905:CDS 40.0%
!! AGAGAAATACCTTGATGGTG+TGG + chr1.4:43899696-43899715 MS.gene40905:CDS 40.0%
!! AGAGATGCGTGTTGACTTAT+GGG + chr1.4:43896998-43897017 MS.gene40905:CDS 40.0%
!! GAAATTCAGCTCTGGAAGTA+GGG + chr1.4:43901090-43901109 MS.gene40905:CDS 40.0%
!! GATGGCTGCATTGTTGTTTA+TGG + chr1.4:43902832-43902851 MS.gene40905:CDS 40.0%
!! TGGTATTTGGTTGGCTTTGA+AGG + chr1.4:43898499-43898518 MS.gene40905:CDS 40.0%
!! TTGATGGTGTGGAAATGATG+AGG + chr1.4:43899707-43899726 MS.gene40905:CDS 40.0%
!! TTTGGTTCCCAGAGTTGTTT+TGG + chr1.4:43896785-43896804 MS.gene40905:CDS 40.0%
!!! CAGAGTTGTTTTGGTTTCTC+AGG + chr1.4:43896794-43896813 MS.gene40905:CDS 40.0%
!!! CTTCTGCTGCTGTGATTTTT+TGG + chr1.4:43898530-43898549 MS.gene40905:intron 40.0%
!!! TGGAATTTTGGGGTTGATGT+CGG - chr1.4:43898128-43898147 None:intergenic 40.0%
ACGTTGCAGTGTCAGAATAG+CGG - chr1.4:43898696-43898715 None:intergenic 45.0%
ACTTTCTTATGGGGCAACTC+GGG + chr1.4:43898641-43898660 MS.gene40905:CDS 45.0%
AGGGTCTTCTTAGTGTGAAG+AGG + chr1.4:43902136-43902155 MS.gene40905:CDS 45.0%
ATGTAGGTACGGCCATTATG+AGG - chr1.4:43901044-43901063 None:intergenic 45.0%
ATTGGTGCATTCCTTAGCAC+TGG + chr1.4:43902803-43902822 MS.gene40905:CDS 45.0%
CAATAAACGAACCCATCTGC+TGG - chr1.4:43899880-43899899 None:intergenic 45.0%
CAATAGCCCCCTTTCCATAT+CGG - chr1.4:43898861-43898880 None:intergenic 45.0%
CATTAATCTCTCTCCGGATC+AGG + chr1.4:43900632-43900651 MS.gene40905:CDS 45.0%
CCCAAAAATTCGAGGAAGCT+CGG - chr1.4:43897696-43897715 None:intergenic 45.0%
CCCTAAACGAGTACTTCAAG+AGG - chr1.4:43902955-43902974 None:intergenic 45.0%
CGTCTTCATCACTTAGTCAC+TGG - chr1.4:43897602-43897621 None:intergenic 45.0%
CTCCAGAGACTCGTAATGAA+AGG - chr1.4:43902046-43902065 None:intergenic 45.0%
CTGATCCGGAGAGAGATTAA+TGG - chr1.4:43900634-43900653 None:intergenic 45.0%
CTGTTATCAGAAGCAGATCG+TGG + chr1.4:43896514-43896533 MS.gene40905:CDS 45.0%
GACCTTTCATTACGAGTCTC+TGG + chr1.4:43902041-43902060 MS.gene40905:CDS 45.0%
GAGAGGGAGAGAAAGAATAC+CGG - chr1.4:43902216-43902235 None:intergenic 45.0%
GATGAAGACGATTGAAGTCG+TGG + chr1.4:43897612-43897631 MS.gene40905:intron 45.0%
GATGAATGCCATCATGCTTC+GGG + chr1.4:43897481-43897500 MS.gene40905:CDS 45.0%
GCAGTCATCCCAAAAATTCG+AGG - chr1.4:43897704-43897723 None:intergenic 45.0%
GCATCCCCAATTAAGTCGAA+AGG + chr1.4:43897722-43897741 MS.gene40905:CDS 45.0%
GCCGTCCAGCTATTGTATTT+CGG - chr1.4:43899169-43899188 None:intergenic 45.0%
GCGACATCAATTCTTGAGGA+GGG + chr1.4:43899372-43899391 MS.gene40905:CDS 45.0%
GCTGCCATCAATTGCTATAG+AGG + chr1.4:43900881-43900900 MS.gene40905:CDS 45.0%
GCTTGGATGAGCTTGGTATT+TGG + chr1.4:43898486-43898505 MS.gene40905:CDS 45.0%
GCTTGTAGAGGACAACTCTT+AGG - chr1.4:43900084-43900103 None:intergenic 45.0%
GGAAGATTTCCGTATGGGAT+TGG + chr1.4:43899255-43899274 MS.gene40905:CDS 45.0%
GGACTGTACAAAACTGCACA+CGG - chr1.4:43899448-43899467 None:intergenic 45.0%
GGATGAATGCCATCATGCTT+CGG + chr1.4:43897480-43897499 MS.gene40905:CDS 45.0%
GGATGAGCTTGGTATTTGGT+TGG + chr1.4:43898490-43898509 MS.gene40905:CDS 45.0%
GGGTCTTCTTAGTGTGAAGA+GGG + chr1.4:43902137-43902156 MS.gene40905:CDS 45.0%
TATAGGCAATCGAAGGACAG+AGG + chr1.4:43901362-43901381 MS.gene40905:CDS 45.0%
TCACGGATATAGGCAATCGA+AGG + chr1.4:43901355-43901374 MS.gene40905:CDS 45.0%
TGAGCATCAACGCCTACTTA+AGG + chr1.4:43901301-43901320 MS.gene40905:CDS 45.0%
TGATAGCATCTTGGTACGTC+AGG - chr1.4:43903025-43903044 None:intergenic 45.0%
TGCGACATCAATTCTTGAGG+AGG + chr1.4:43899371-43899390 MS.gene40905:CDS 45.0%
TGGAAGGGAAGAATGATGCA+AGG - chr1.4:43899740-43899759 None:intergenic 45.0%
TGGACGGCTAAATTCATTGC+AGG + chr1.4:43899181-43899200 MS.gene40905:CDS 45.0%
TGGACTGTCTACTTGAGTAC+AGG + chr1.4:43898903-43898922 MS.gene40905:CDS 45.0%
TGGTGTGGAAATGATGAGGA+AGG + chr1.4:43899711-43899730 MS.gene40905:CDS 45.0%
TGTACAAAACTGCACACGGT+GGG - chr1.4:43899444-43899463 None:intergenic 45.0%
TTCCCTTCCATGTGAAAGTC+TGG + chr1.4:43899750-43899769 MS.gene40905:CDS 45.0%
! ACCGAGCTTCCTCGAATTTT+TGG + chr1.4:43897692-43897711 MS.gene40905:CDS 45.0%
! ACTTTAAACCGACTCCAAGG+TGG + chr1.4:43900031-43900050 MS.gene40905:CDS 45.0%
! AGCCTTTTGATCCTAAGACC+TGG + chr1.4:43902654-43902673 MS.gene40905:CDS 45.0%
! CCCATTTTGTCTAAACTCCC+AGG + chr1.4:43900007-43900026 MS.gene40905:intron 45.0%
! CCCTCTTGAAGTACTCGTTT+AGG + chr1.4:43902951-43902970 MS.gene40905:CDS 45.0%
! CCGAGCTTCCTCGAATTTTT+GGG + chr1.4:43897693-43897712 MS.gene40905:CDS 45.0%
! CTTTAAACCGACTCCAAGGT+GGG + chr1.4:43900032-43900051 MS.gene40905:CDS 45.0%
! GGAGTCGGTTTAAAGTACCT+GGG - chr1.4:43900027-43900046 None:intergenic 45.0%
! GGTACTTTAAACCGACTCCA+AGG + chr1.4:43900028-43900047 MS.gene40905:intron 45.0%
! GGTCTCCTTGCATGATTTTG+TGG - chr1.4:43902025-43902044 None:intergenic 45.0%
! GTAGCTTCGAAGAAGCATGA+TGG - chr1.4:43896724-43896743 None:intergenic 45.0%
! TACCAGTGGTGATGTAGGTA+CGG - chr1.4:43901055-43901074 None:intergenic 45.0%
! TGGAGTCGGTTTAAAGTACC+TGG - chr1.4:43900028-43900047 None:intergenic 45.0%
!! AGCATTGACTTGCCTCTCAT+AGG - chr1.4:43902894-43902913 None:intergenic 45.0%
!! ATGCGTGTTGACTTATGGGA+TGG + chr1.4:43897002-43897021 MS.gene40905:CDS 45.0%
!! CTCTTGTTGGTAATCACTGC+TGG + chr1.4:43897353-43897372 MS.gene40905:intron 45.0%
!! GAGAGATGCGTGTTGACTTA+TGG + chr1.4:43896997-43897016 MS.gene40905:CDS 45.0%
!! GCATTGACTTGCCTCTCATA+GGG - chr1.4:43902893-43902912 None:intergenic 45.0%
!! GGAAATTCAGCTCTGGAAGT+AGG + chr1.4:43901089-43901108 MS.gene40905:CDS 45.0%
!! TCAGATGCTCAGTGGACTAT+TGG + chr1.4:43898821-43898840 MS.gene40905:intron 45.0%
!!! ATTTTATATTAATATTAATC+TGG + chr1.4:43897104-43897123 MS.gene40905:intron 5.0%
AACGCTGCCCTCTGTAAGTT+AGG + chr1.4:43902174-43902193 MS.gene40905:CDS 50.0%
AGTCGTTGAAGAAGCAGAGG+TGG + chr1.4:43900212-43900231 MS.gene40905:CDS 50.0%
CAGCTTCAGTGCTTGCAACA+CGG - chr1.4:43899804-43899823 None:intergenic 50.0%
CAGGAGTCATAACAAGCACC+TGG - chr1.4:43897396-43897415 None:intergenic 50.0%
CCAGGAATGATCCAGGTCTT+AGG - chr1.4:43902668-43902687 None:intergenic 50.0%
CCTAAGACCTGGATCATTCC+TGG + chr1.4:43902665-43902684 MS.gene40905:CDS 50.0%
CTGAGTTGCAGGGCTTCATA+CGG + chr1.4:43902627-43902646 MS.gene40905:intron 50.0%
CTGCAACGTTACCTACCATC+TGG + chr1.4:43898707-43898726 MS.gene40905:CDS 50.0%
CTGTACAAAACTGCACACGG+TGG - chr1.4:43899445-43899464 None:intergenic 50.0%
TATGAAGCCCTGCAACTCAG+AGG - chr1.4:43902627-43902646 None:intergenic 50.0%
TGTAAGGAGAAGGCTTTCGG+AGG - chr1.4:43896755-43896774 None:intergenic 50.0%
TGTTTGTCCCACCTTGGAGT+CGG - chr1.4:43900042-43900061 None:intergenic 50.0%
! GTGTACTTGGAGACTGGTTG+TGG + chr1.4:43896684-43896703 MS.gene40905:CDS 50.0%
! TACGAGTCTCTGGAGACTCT+AGG + chr1.4:43902051-43902070 MS.gene40905:CDS 50.0%
!! TGCAGTTTTGTACAGTCCCG+TGG + chr1.4:43899450-43899469 MS.gene40905:CDS 50.0%
AAACTGCACACGGTGGGAGA+TGG - chr1.4:43899438-43899457 None:intergenic 55.0%
AACTGCACACGGTGGGAGAT+GGG - chr1.4:43899437-43899456 None:intergenic 55.0%
CCAAGGTGGGACAAACAGAC+TGG + chr1.4:43900045-43900064 MS.gene40905:CDS 55.0%
CCAGTCTGTTTGTCCCACCT+TGG - chr1.4:43900048-43900067 None:intergenic 55.0%
CCATCTCACTGCCAGTGCTA+AGG - chr1.4:43902817-43902836 None:intergenic 55.0%
CGTTGAAGAAGCAGAGGTGG+AGG + chr1.4:43900215-43900234 MS.gene40905:CDS 55.0%
GAAGCAGAGGTGGAGGACTT+TGG + chr1.4:43900222-43900241 MS.gene40905:CDS 55.0%
GCTCACGACTTCCAGCAGAT+GGG + chr1.4:43899866-43899885 MS.gene40905:CDS 55.0%
GGTGTCTACCCGAAGCATGA+TGG - chr1.4:43897492-43897511 None:intergenic 55.0%
TGCTCACGACTTCCAGCAGA+TGG + chr1.4:43899865-43899884 MS.gene40905:CDS 55.0%
TTTGCATTCTGGCACGGCCA+CGG - chr1.4:43899470-43899489 None:intergenic 55.0%
!! CCTTAGCACTGGCAGTGAGA+TGG + chr1.4:43902814-43902833 MS.gene40905:CDS 55.0%
!! TCAGCTCTGGAAGTAGGGGA+TGG + chr1.4:43901095-43901114 MS.gene40905:CDS 55.0%
GGCCGTACCTACATCACCAC+TGG + chr1.4:43901050-43901069 MS.gene40905:CDS 60.0%
TTGCATTCTGGCACGGCCAC+GGG - chr1.4:43899469-43899488 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 43896485 43903045 43896485 ID=MS.gene40905
chr1.4 mRNA 43896485 43903045 43896485 ID=MS.gene40905.t1;Parent=MS.gene40905
chr1.4 exon 43896485 43896561 43896485 ID=MS.gene40905.t1.exon1;Parent=MS.gene40905.t1
chr1.4 CDS 43896485 43896561 43896485 ID=cds.MS.gene40905.t1;Parent=MS.gene40905.t1
chr1.4 exon 43896638 43896815 43896638 ID=MS.gene40905.t1.exon2;Parent=MS.gene40905.t1
chr1.4 CDS 43896638 43896815 43896638 ID=cds.MS.gene40905.t1;Parent=MS.gene40905.t1
chr1.4 exon 43896945 43897058 43896945 ID=MS.gene40905.t1.exon3;Parent=MS.gene40905.t1
chr1.4 CDS 43896945 43897058 43896945 ID=cds.MS.gene40905.t1;Parent=MS.gene40905.t1
chr1.4 exon 43897397 43897531 43897397 ID=MS.gene40905.t1.exon4;Parent=MS.gene40905.t1
chr1.4 CDS 43897397 43897531 43897397 ID=cds.MS.gene40905.t1;Parent=MS.gene40905.t1
chr1.4 exon 43897659 43897743 43897659 ID=MS.gene40905.t1.exon5;Parent=MS.gene40905.t1
chr1.4 CDS 43897659 43897743 43897659 ID=cds.MS.gene40905.t1;Parent=MS.gene40905.t1
chr1.4 exon 43897871 43897935 43897871 ID=MS.gene40905.t1.exon6;Parent=MS.gene40905.t1
chr1.4 CDS 43897871 43897935 43897871 ID=cds.MS.gene40905.t1;Parent=MS.gene40905.t1
chr1.4 exon 43898083 43898223 43898083 ID=MS.gene40905.t1.exon7;Parent=MS.gene40905.t1
chr1.4 CDS 43898083 43898223 43898083 ID=cds.MS.gene40905.t1;Parent=MS.gene40905.t1
chr1.4 exon 43898392 43898520 43898392 ID=MS.gene40905.t1.exon8;Parent=MS.gene40905.t1
chr1.4 CDS 43898392 43898520 43898392 ID=cds.MS.gene40905.t1;Parent=MS.gene40905.t1
chr1.4 exon 43898608 43898728 43898608 ID=MS.gene40905.t1.exon9;Parent=MS.gene40905.t1
chr1.4 CDS 43898608 43898728 43898608 ID=cds.MS.gene40905.t1;Parent=MS.gene40905.t1
chr1.4 exon 43898825 43898924 43898825 ID=MS.gene40905.t1.exon10;Parent=MS.gene40905.t1
chr1.4 CDS 43898825 43898924 43898825 ID=cds.MS.gene40905.t1;Parent=MS.gene40905.t1
chr1.4 exon 43899081 43899276 43899081 ID=MS.gene40905.t1.exon11;Parent=MS.gene40905.t1
chr1.4 CDS 43899081 43899276 43899081 ID=cds.MS.gene40905.t1;Parent=MS.gene40905.t1
chr1.4 exon 43899357 43899517 43899357 ID=MS.gene40905.t1.exon12;Parent=MS.gene40905.t1
chr1.4 CDS 43899357 43899517 43899357 ID=cds.MS.gene40905.t1;Parent=MS.gene40905.t1
chr1.4 exon 43899669 43899887 43899669 ID=MS.gene40905.t1.exon13;Parent=MS.gene40905.t1
chr1.4 CDS 43899669 43899887 43899669 ID=cds.MS.gene40905.t1;Parent=MS.gene40905.t1
chr1.4 exon 43900029 43900243 43900029 ID=MS.gene40905.t1.exon14;Parent=MS.gene40905.t1
chr1.4 CDS 43900029 43900243 43900029 ID=cds.MS.gene40905.t1;Parent=MS.gene40905.t1
chr1.4 exon 43900484 43900653 43900484 ID=MS.gene40905.t1.exon15;Parent=MS.gene40905.t1
chr1.4 CDS 43900484 43900653 43900484 ID=cds.MS.gene40905.t1;Parent=MS.gene40905.t1
chr1.4 exon 43900756 43901153 43900756 ID=MS.gene40905.t1.exon16;Parent=MS.gene40905.t1
chr1.4 CDS 43900756 43901153 43900756 ID=cds.MS.gene40905.t1;Parent=MS.gene40905.t1
chr1.4 exon 43901280 43901383 43901280 ID=MS.gene40905.t1.exon17;Parent=MS.gene40905.t1
chr1.4 CDS 43901280 43901383 43901280 ID=cds.MS.gene40905.t1;Parent=MS.gene40905.t1
chr1.4 exon 43901529 43901722 43901529 ID=MS.gene40905.t1.exon18;Parent=MS.gene40905.t1
chr1.4 CDS 43901529 43901722 43901529 ID=cds.MS.gene40905.t1;Parent=MS.gene40905.t1
chr1.4 exon 43902006 43902215 43902006 ID=MS.gene40905.t1.exon19;Parent=MS.gene40905.t1
chr1.4 CDS 43902006 43902215 43902006 ID=cds.MS.gene40905.t1;Parent=MS.gene40905.t1
chr1.4 exon 43902638 43903045 43902638 ID=MS.gene40905.t1.exon20;Parent=MS.gene40905.t1
chr1.4 CDS 43902638 43903045 43902638 ID=cds.MS.gene40905.t1;Parent=MS.gene40905.t1
Gene Sequence

>MS.gene40905

ATGGAAGAAGCTCTGATGGAAATAGATGACTGTTATCAGAAGCAGATCGTGGCTGACACTCTTCCATTTGCTAGAAGGTTAGTTTCTTAAACCTAAACCTTTTCATTGTAATGTTTGCTTGGATTGATGATTTTTTTTTTTTTTTTGGTGTAGCTATCAACTTGAAGCATTGGATAAAGCGATTCGTGAAAATACTATAGTGTACTTGGAGACTGGTTGTGGAAAGACTTTGATAGCCATCATGCTTCTTCGAAGCTACGCTTATCACCTCCGAAAGCCTTCTCCTTACATTGCTGTTTTTTTGGTTCCCAGAGTTGTTTTGGTTTCTCAGGTATTATGCTGCCACTTTCATCTCTTTTACAATAACTTTGCGAATTACAGATGCATTCTCTGATGAATGATTTCTATGTGATGATTGAGAATTCACTGTGCTTGTTGTTTATTTACTTGTGTATTCTAGCAAGCTAAGGCTTTGAGAAATCACACTGATTTGAAAGTTGGAACGTATTCGGGAGAGATGCGTGTTGACTTATGGGATGGAGCTATATGGAAAGAAGAAATGGCGAAACATGAGGTGAGAGTCTTTGCATTTCAATGGCCGCTAGAATACGTCATTGTTATTTTATATTAATATTAATCTGGTTTGCATAACAATAATCTATCTGTTTGAGCCATATATGAAATATTCTTCTAAACTTTATTAGTTTGTACTACGCAGATTCCAGTGAAACAAGAAATAGACAATTTTTTCTTATTAATTTTGTTTATGTCAATGAAATCTTATCTTATATTAAACAAACATATAGCTAATTAACCGACTAATTAATATTGCTCTTTCTGGAATTCATTCCTTTCATGTGGCTTCAATCTCTTGTTGGTAATCACTGCTGGTAATGCTTTTGAATGTACCAGGTGCTTGTTATGACTCCTGCAATATTGCTTTCTTGCTTGAGGCATAGCTTTATGAAACTGAAAATGATAAAGGTTTTAATAATGGATGAATGCCATCATGCTTCGGGTAGACACCCATATGCTTGTATCATGACTGTAAGTGTGTATTTGAACTCATTACCGTAGTATATTTTGATCGCAATATGTTAGTATACACTTATTTCCAGTGACTAAGTGATGAAGACGATTGAAGTCGTGGTTACTTTTGTTTGATTGTGTGCAGGAATTTTATCACCATCAATTAAGATCTGGTATCACCGAGCTTCCTCGAATTTTTGGGATGACTGCATCCCCAATTAAGTCGAAAGGTATAAAAGCCTATAGAAAGTTTCTATTCATTTATTTGCTTTGTTAGTTCTTTCCAGCTTATTTATCAGTGTCAGTTATTCTCTCAAGTTCTATTTCATTTATCTTCACTTTTATTTTTTGATACAGCGGCAAATTCTAAGTCGACCTTGTCGAAAAATATTCGGCAACTAATGACTTTAATGAATTCAAAGGTTGTTTTTACTTTCATTTTCTTTATGTACAATTTTTCTTACTTTATTACTTTATTCTTTATACGTGTTTATTGTGTTCAGTGGCAATAATTTATCCCCCTTATCTTCTCGGTGAATTTCTCTGATATTTTGTTTTCTGAATCGAAGGTTTATACATGTGTGAGTGATGCTGTCATCTCCAAATTCATACCGACATCAACCCCAAAATTCCAGTTTTTCGATGAAAATGTAATTTCATATGCGCTATTTGAAGAATTAGCCAATAAACTCAGCAGTTTAAAACAACAGGTGTGTACATATGCAAATGATTGTTTACATTGATATTAGACTAAAGTTTCTTTACATGTTTTGTCATCCATTCTTAAATTTTGTTACTGATTCCAAACTATATTAGTGCGTGTTTTAGTCCAATCATAGTTGATTATTAACTTGAAATGGCTCTAATTTGTTCTTCAGCACGAGCTTATCGTCACAAATTCAAATTTCATAAAGTCAACTGTTGACTCTGCACACAAGAAAATAGCAAGGATTTATACTCACTCAATGTTTTGCTTGGATGAGCTTGGTATTTGGTTGGCTTTGAAGGTTCTTGCCCTTCTGCTGCTGTGATTTTTTGGCTCTATTTTACGTTCGTGTTTGCATAATTGACATCAACTTTGTTTTACGTGATAGGCTGCAGAGTCTTTATCATCCATTGGAATTGAAACTTTCTTATGGGGCAACTCGGGTGATCAAATTGTGAAAGATTTTTGCTCGTCCGCTATTCTGACACTGCAACGTTACCTACCATCTGGTAATAATTCTACAATCTTGAGAAAATACATGATATTTCAATTTAATCTTTTGTTTGCATTCTTTTATTAATTCTAGAAAGTGTCTTCTTAATCAGATGCTCAGTGGACTATTGGTGACAATATGAATTCCGATATGGAAAGGGGGCTATTGACCTCCAAAGTGTGTTGTCTTATGGACTGTCTACTTGAGTACAGGTTATCATAAACAGATTCTTTCAAAAAATATTTTATATCATGTATCATAAATAGATCTTGCAGTAATGTTTTTATCTTTTCCATGCTCACATCAATAGTTTTTGTTTTCATCTCATTTTGATTATTATTATTAAATCTGTTTTACTGAAATTACAGGAGTTTTACAGAAATGAGATGCATAGTTTTTGTGGAAAGGGTCATTACAGCTATTGTCCTTGAGATTCTTTTGAACACTTTGCTTCCGAAATACAATAGCTGGACGGCTAAATTCATTGCAGGAAACGGTAGTAAATTACAAAACCAAACAAGGAAAAATCAAAATCAAATTGTGGAAGATTTCCGTATGGGATTGGTATGCTACTTTCTTGTATAATCCACTGTATTGTAATAAGCAAATGCAGTTACTTATTAAGGAAACATTTTAATCTATAGGTCAACGTCATTGTTGCGACATCAATTCTTGAGGAGGGTTTAGATGTTCAAAGTTGCAATTTGGTTATTAGATTTGACCCATCTCCCACCGTGTGCAGTTTTGTACAGTCCCGTGGCCGTGCCAGAATGCAAAATTCAGATTATATATTGATGGTTAAGAGGTAATTATTGTGATTTCAATTTACTATAGTACCACTTAGGAAAGTTCTATTTAGCCTGATGCAAGAGACAAAGTTATAATATCAAATCTATATGTTCATTGTTTTGAGGTAAGCATACCTAAAACTTCTATATTTTGTTCCAAAATTACAGTGGGGATTCAGTTACACGTTCTCGATTAGAGAAATACCTTGATGGTGTGGAAATGATGAGGAAGGAGTCCTTGCATCATTCTTCCCTTCCATGTGAAAGTCTGGAAAGTGATCAATTTAATGAGCAAGCTTACCGTGTTGCAAGCACTGAAGCTGTTGTCAATCTTAGTTCTAGCATTACTTTGATATACTTGTACTGCTCACGACTTCCAGCAGATGGGTTCGTTTATTGCTACCCTTATTCCATTTTTTCTCCGTTTAATGAACCTTAAGATTTGTTTTCTTTTGCATTAATCTGATCCTTTTAATTTATTTATTTTTATCTCGTTCATCATTCATCCCATTTTGTCTAAACTCCCAGGTACTTTAAACCGACTCCAAGGTGGGACAAACAGACTGGAACGTTGTATCTTCCTAAGAGTTGTCCTCTACAAGCTATTAATGTACAAGGTGACTCAAAGTTCTTAAAAAATATTGCATGTCTTGAAGCATGCAAACGACTTCATATGACTGGAGCTTTGACAGATAATCTTGTTCCTTCTATAGTCGTTGAAGAAGCAGAGGTGGAGGACTTTGGTAACTTCATGCTTTCTATTCATTTTTCATTTTATTATTATTGCCTTTAAATTTTTAATATTACGTGAATGTAAGTTTCTATTTAACCATATACTAATTCTATAAATGGCATCGACGCAAAAAAAAAAAATCTTACAGGGAATGAACCATATGATGTGGATCAACCAAGTTATGTACCACTTGAATTGGTGAATCGTATGCCAAACAATAGTAACACAATATACTATTGTTATTTAATAGAGCTAAAACAAAATTTTAGCTACGATATCACTGTGCAAGACATTTTTCTTGCAACTAGAGTCAAGCTTGATCTAGAAACTGAATGCATGCAATTTGACATGTGTTTCGATAGAGGTAGCTTGTCTGTAAACTTGAGATACAAAGGATCCATTAATCTCTCTCCGGATCAGGTATCTCTCTATTACTCCTTTAATTGTTTTTTTTAATTGCATCTGACATATTCGCAAGTGTTGGAAAAGTCAAAACAATTATGGTTTGTTTTCATTTTCCAGGTTCTTTTGTGTAAAAGATTCCAAGTTAATGTCCTTGGAATTCTTATGAACCATAATAAAACAGATATGGAAACTGTTTCCGACAAATTCTGTTTGGAAGATGATCTTGAGTTTGATTATCTTCTGCTGCCATCAATTGCTATAGAGGAAACACCATCTGTTGATTGGATAACTATTAATTCCATACATCCATCTATAGTTAAGTGCCTGCATCATGACGCAAATATATGCACTGAAAAGGGTTTAGTTTGCCCTTGCATATTGCGAAATGCTTTGATTTGTACTCCTCATAATGGCCGTACCTACATCACCACTGGTATAATGGAATTGGATGGAAATTCAGCTCTGGAAGTAGGGGATGGTGAAGTGACCACGTACAAGAATTACTTTGGACAAAAGTAAGTAATTTTTTGTGGTAGATGTTCAGGGTCAAGTTAATCTATCAGCTCTAGTGCCTTATATATTATGCGGTTAATTTATCTATTTTAGGGCATTATTCTAATTTATCCTTTTCTGAGTTTCAGACATGGCATTCAATTGCGTTTTGAGCATCAACGCCTACTTAAGGCAAGACACGTTTTTCCAGTAAAAAATTATTGTCACGGATATAGGCAATCGAAGGACAGAGGTTTGAGCTTTAAATTTTTTACTTTGTTTTTTGCGGTACCTTGATCTTTTCTTAGTGAGTACCATGCAAACATTTGGACTTTGGTGTTCATAAAAGCACGCAATAATGTGTAATCTGATATTAATCGTGTGTTTTTCTTTTTCAGATGTGAGCAAGACCTTTGTTGAGTTACCTCCTGAACTTTGCTCTATAATCATGTCACCAATATCAGTCAGAACTCTTTATTCATTTTCATTTATTCCATCGATCATGCATAGACTTGAGTCATTGCTTGTAGCTTTGAACTTTAAAAAGATGCATTTGAATCATTGCCCTCAGAACGGTATTCAAACATTCAAGGTGGGCTAGTTTTTCTTCTTTCCAGAATTAAGAATTCTGTATCTATTGGTTTTTTCCTTAATAGGTAATAAGTTTAGAAAAACAGTTTATTTTTTATTGTATGTTTCTCGTATAATAATTTATTAATAATGAAAGTAGTTTTGAAACAAAGTTGTACTTGAAAACGGTAAGACTCCGAATAATGAATGTAAAGAGTTCCTTTTGGAACTTTCTCCTCTTGCTTTTTTTGGTTAGTACATTTTAAAGATATTTGCACTGATGGTATCTGCATTTTGCATTTTAGGTCTTGGAAGCAATGACCACAAAATCATGCAAGGAGACCTTTCATTACGAGTCTCTGGAGACTCTAGGAGATTCTTTTTTAAAATATGCTGTTAGTCAACAGCTTTTTAATATGTATGAAAATCATCACGAGGGTCTTCTTAGTGTGAAGAGGGAGAAGATCATTTGTAACGCTGCCCTCTGTAAGTTAGGTTGCAGTTCTATACTTCCGGTATTCTTTCTCTCCCTCTCTTTTTAATAGATTAGTCTTTAATCTTGTATGCTTACATCTCTTATGAAGCTGTCTTTCAACTGATTTCTTAATTAGTTGATATTGTGTTTTAGAAGTTTGCAGAAGATCGGAGTTATTATAATTTTGATCCTATAATATGCTTCTAACTTGGCTGATTATTATGTCGGTATCAATTTTTTTATTTTCAGTTTTTTGCTTTCTCGAAGCACTGAAGATCAAAACAAAAAGTGTACAATACTCACTATTTACCGTAATAAGTATTATGTTCTCAAAACAGTAATGCTTATAAATATTGATTATGTTGTATTGTTTGGCTTTTCATTTTGCGTTATTATTTTGAAACTGTAATTGCAGATAATACATTAATTTTGTTGTTGATTATATATTCCTCTGAGTTGCAGGGCTTCATACGGAATGAGCCTTTTGATCCTAAGACCTGGATCATTCCTGGAGTTAAATCAAGATGTTTTAAATTAGAAGAGACAATTTTCAAGGGGACAAAAATATATACTCGTGGAAATAGAAAATTGAAACGGAAAGTTGTTGCTGATGTTGTCGAAGCACTAATTGGTGCATTCCTTAGCACTGGCAGTGAGATGGCTGCATTGTTGTTTATGGATTGGGTTGGTATCAAAGTGAATCTTAATATTACACCCTATGAGAGGCAAGTCAATGCTTGTCCAGATAATCTAGTTAATGTCAGCTATCTAGAATCCCTCTTGAAGTACTCGTTTAGGGACCGTTCCCTATTAGTAGAAGCTATGACACACGGTTCTTACATGCTGCCTGACGTACCAAGATGCTATCAG
Protein sequence

>MS.gene40905.t1

MEEALMEIDDCYQKQIVADTLPFARSYQLEALDKAIRENTIVYLETGCGKTLIAIMLLRSYAYHLRKPSPYIAVFLVPRVVLVSQQAKALRNHTDLKVGTYSGEMRVDLWDGAIWKEEMAKHEVLVMTPAILLSCLRHSFMKLKMIKVLIMDECHHASGRHPYACIMTEFYHHQLRSGITELPRIFGMTASPIKSKAANSKSTLSKNIRQLMTLMNSKVYTCVSDAVISKFIPTSTPKFQFFDENVISYALFEELANKLSSLKQQHELIVTNSNFIKSTVDSAHKKIARIYTHSMFCLDELGIWLALKAAESLSSIGIETFLWGNSGDQIVKDFCSSAILTLQRYLPSDAQWTIGDNMNSDMERGLLTSKVCCLMDCLLEYRSFTEMRCIVFVERVITAIVLEILLNTLLPKYNSWTAKFIAGNGSKLQNQTRKNQNQIVEDFRMGLVNVIVATSILEEGLDVQSCNLVIRFDPSPTVCSFVQSRGRARMQNSDYILMVKSGDSVTRSRLEKYLDGVEMMRKESLHHSSLPCESLESDQFNEQAYRVASTEAVVNLSSSITLIYLYCSRLPADGYFKPTPRWDKQTGTLYLPKSCPLQAINVQGDSKFLKNIACLEACKRLHMTGALTDNLVPSIVVEEAEVEDFELKQNFSYDITVQDIFLATRVKLDLETECMQFDMCFDRGSLSVNLRYKGSINLSPDQVLLCKRFQVNVLGILMNHNKTDMETVSDKFCLEDDLEFDYLLLPSIAIEETPSVDWITINSIHPSIVKCLHHDANICTEKGLVCPCILRNALICTPHNGRTYITTGIMELDGNSALEVGDGEVTTYKNYFGQKHGIQLRFEHQRLLKARHVFPVKNYCHGYRQSKDRDVSKTFVELPPELCSIIMSPISVRTLYSFSFIPSIMHRLESLLVALNFKKMHLNHCPQNGIQTFKVLEAMTTKSCKETFHYESLETLGDSFLKYAVSQQLFNMYENHHEGLLSVKREKIICNAALCKLGCSSILPGFIRNEPFDPKTWIIPGVKSRCFKLEETIFKGTKIYTRGNRKLKRKVVADVVEALIGAFLSTGSEMAALLFMDWVGIKVNLNITPYERQVNACPDNLVNVSYLESLLKYSFRDRSLLVEAMTHGSYMLPDVPRCYQ