Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57755.t1 | XP_013458135.1 | 90.3 | 1305 | 74 | 7 | 1 | 1252 | 320 | 1624 | 0.00E+00 | 2283.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57755.t1 | P84634 | 50.9 | 1303 | 576 | 16 | 1 | 1249 | 409 | 1701 | 0.0e+00 | 1202.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57755.t1 | A0A072US37 | 90.3 | 1305 | 74 | 7 | 1 | 1252 | 320 | 1624 | 0.0e+00 | 2283.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050425 | MS.gene57755 | 0.807751 | 4.34E-50 | -1.69E-46 |
MS.gene050856 | MS.gene57755 | 0.805255 | 1.46E-49 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57755.t1 | MTR_4g116860 | 90.268 | 1305 | 74 | 7 | 1 | 1252 | 320 | 1624 | 0.0 | 2358 |
MS.gene57755.t1 | MTR_3g105390 | 30.700 | 1342 | 738 | 41 | 63 | 1249 | 397 | 1701 | 3.18e-152 | 501 |
MS.gene57755.t1 | MTR_1g060740 | 30.656 | 1083 | 621 | 34 | 59 | 1084 | 362 | 1371 | 1.16e-118 | 402 |
MS.gene57755.t1 | MTR_2g030490 | 30.435 | 1127 | 639 | 37 | 21 | 1084 | 324 | 1368 | 8.38e-114 | 388 |
MS.gene57755.t1 | MTR_8g069975 | 31.545 | 932 | 516 | 31 | 59 | 946 | 366 | 1219 | 2.93e-109 | 372 |
MS.gene57755.t1 | MTR_7g118350 | 28.792 | 778 | 419 | 22 | 520 | 1236 | 1125 | 1828 | 1.74e-65 | 245 |
MS.gene57755.t1 | MTR_7g118350 | 29.114 | 474 | 276 | 10 | 65 | 517 | 622 | 1056 | 3.75e-48 | 189 |
MS.gene57755.t1 | MTR_7g118350 | 28.792 | 778 | 419 | 22 | 520 | 1236 | 1164 | 1867 | 1.76e-65 | 245 |
MS.gene57755.t1 | MTR_7g118350 | 29.979 | 487 | 294 | 11 | 65 | 517 | 622 | 1095 | 1.15e-51 | 200 |
MS.gene57755.t1 | MTR_3g079980 | 32.653 | 245 | 141 | 6 | 872 | 1096 | 230 | 470 | 1.40e-25 | 113 |
MS.gene57755.t1 | MTR_3g080000 | 33.862 | 189 | 104 | 5 | 872 | 1045 | 72 | 254 | 2.35e-23 | 102 |
MS.gene57755.t1 | MTR_8g058930 | 28.309 | 272 | 166 | 8 | 861 | 1113 | 1 | 262 | 1.14e-22 | 101 |
MS.gene57755.t1 | MTR_3g079860 | 28.958 | 259 | 157 | 8 | 872 | 1109 | 169 | 421 | 6.62e-21 | 98.6 |
MS.gene57755.t1 | MTR_3g096700 | 27.985 | 268 | 168 | 6 | 863 | 1113 | 3 | 262 | 1.83e-20 | 94.7 |
MS.gene57755.t1 | MTR_1g103260 | 33.136 | 169 | 91 | 6 | 31 | 188 | 410 | 567 | 1.11e-12 | 73.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene57755.t1 | AT5G20320 | 51.143 | 1312 | 559 | 17 | 1 | 1249 | 409 | 1701 | 0.0 | 1229 |
MS.gene57755.t1 | AT5G20320 | 51.067 | 1312 | 560 | 17 | 1 | 1249 | 395 | 1687 | 0.0 | 1229 |
MS.gene57755.t1 | AT5G20320 | 51.143 | 1312 | 559 | 17 | 1 | 1249 | 184 | 1476 | 0.0 | 1228 |
MS.gene57755.t1 | AT3G03300 | 30.970 | 1072 | 624 | 32 | 63 | 1082 | 154 | 1161 | 4.00e-132 | 435 |
MS.gene57755.t1 | AT3G03300 | 30.970 | 1072 | 624 | 32 | 63 | 1082 | 367 | 1374 | 8.07e-131 | 436 |
MS.gene57755.t1 | AT3G03300 | 30.970 | 1072 | 624 | 32 | 63 | 1082 | 367 | 1374 | 8.07e-131 | 436 |
MS.gene57755.t1 | AT3G03300 | 30.970 | 1072 | 624 | 32 | 63 | 1082 | 353 | 1360 | 1.33e-130 | 435 |
MS.gene57755.t1 | AT3G43920 | 27.393 | 982 | 575 | 30 | 358 | 1246 | 409 | 1345 | 3.62e-79 | 286 |
MS.gene57755.t1 | AT3G43920 | 31.884 | 138 | 94 | 0 | 65 | 202 | 164 | 301 | 1.48e-14 | 79.7 |
MS.gene57755.t1 | AT3G43920 | 27.393 | 982 | 575 | 30 | 358 | 1246 | 637 | 1573 | 4.27e-79 | 287 |
MS.gene57755.t1 | AT3G43920 | 31.884 | 138 | 94 | 0 | 65 | 202 | 392 | 529 | 1.70e-14 | 79.7 |
MS.gene57755.t1 | AT3G43920 | 27.393 | 982 | 575 | 30 | 358 | 1246 | 626 | 1562 | 4.82e-79 | 287 |
MS.gene57755.t1 | AT3G43920 | 31.884 | 138 | 94 | 0 | 65 | 202 | 381 | 518 | 1.68e-14 | 79.7 |
MS.gene57755.t1 | AT3G43920 | 27.393 | 982 | 575 | 30 | 358 | 1246 | 627 | 1563 | 5.10e-79 | 287 |
MS.gene57755.t1 | AT3G43920 | 31.884 | 138 | 94 | 0 | 65 | 202 | 382 | 519 | 1.76e-14 | 79.3 |
MS.gene57755.t1 | AT3G43920 | 27.393 | 982 | 575 | 30 | 358 | 1246 | 588 | 1524 | 8.40e-79 | 286 |
MS.gene57755.t1 | AT3G43920 | 31.884 | 138 | 94 | 0 | 65 | 202 | 343 | 480 | 1.74e-14 | 79.3 |
MS.gene57755.t1 | AT3G43920 | 27.669 | 918 | 540 | 28 | 358 | 1194 | 627 | 1501 | 5.08e-76 | 278 |
MS.gene57755.t1 | AT3G43920 | 31.884 | 138 | 94 | 0 | 65 | 202 | 382 | 519 | 1.65e-14 | 79.7 |
MS.gene57755.t1 | AT1G01040 | 28.816 | 760 | 425 | 19 | 532 | 1236 | 1199 | 1897 | 1.54e-70 | 261 |
MS.gene57755.t1 | AT1G01040 | 27.812 | 489 | 302 | 13 | 65 | 517 | 646 | 1119 | 4.04e-45 | 179 |
MS.gene57755.t1 | AT1G01040 | 28.816 | 760 | 425 | 19 | 532 | 1236 | 1200 | 1898 | 1.58e-70 | 261 |
MS.gene57755.t1 | AT1G01040 | 27.755 | 490 | 302 | 14 | 65 | 517 | 646 | 1120 | 9.24e-44 | 175 |
MS.gene57755.t1 | AT4G15417 | 31.858 | 226 | 133 | 5 | 855 | 1063 | 15 | 236 | 7.02e-22 | 97.4 |
MS.gene57755.t1 | AT4G15417 | 31.858 | 226 | 133 | 5 | 855 | 1063 | 40 | 261 | 1.02e-21 | 97.4 |
MS.gene57755.t1 | AT5G45150 | 26.650 | 394 | 239 | 11 | 869 | 1236 | 4 | 373 | 1.14e-21 | 102 |
MS.gene57755.t1 | AT3G20420 | 23.373 | 415 | 236 | 13 | 852 | 1249 | 42 | 391 | 3.60e-18 | 89.0 |
MS.gene57755.t1 | AT1G80650 | 42.857 | 84 | 47 | 1 | 1162 | 1244 | 107 | 190 | 5.37e-11 | 63.9 |
MS.gene57755.t1 | AT4G00420 | 48.101 | 79 | 39 | 2 | 1171 | 1248 | 64 | 141 | 6.07e-11 | 62.8 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
32402 | gene | 3028 | 12651 | 3028 | ID=MS.gene57755 |
32402 | mRNA | 3028 | 12651 | 3028 | ID=MS.gene57755.t1;Parent=MS.gene57755 |
32402 | exon | 12513 | 12651 | 12513 | ID=MS.gene57755.t1.exon1;Parent=MS.gene57755.t1 |
32402 | CDS | 12513 | 12651 | 12513 | ID=cds.MS.gene57755.t1;Parent=MS.gene57755.t1 |
32402 | exon | 10702 | 10798 | 10702 | ID=MS.gene57755.t1.exon2;Parent=MS.gene57755.t1 |
32402 | CDS | 10702 | 10798 | 10702 | ID=cds.MS.gene57755.t1;Parent=MS.gene57755.t1 |
32402 | exon | 10375 | 10567 | 10375 | ID=MS.gene57755.t1.exon3;Parent=MS.gene57755.t1 |
32402 | CDS | 10375 | 10567 | 10375 | ID=cds.MS.gene57755.t1;Parent=MS.gene57755.t1 |
32402 | exon | 9243 | 9403 | 9243 | ID=MS.gene57755.t1.exon4;Parent=MS.gene57755.t1 |
32402 | CDS | 9243 | 9403 | 9243 | ID=cds.MS.gene57755.t1;Parent=MS.gene57755.t1 |
32402 | exon | 8955 | 9161 | 8955 | ID=MS.gene57755.t1.exon5;Parent=MS.gene57755.t1 |
32402 | CDS | 8955 | 9161 | 8955 | ID=cds.MS.gene57755.t1;Parent=MS.gene57755.t1 |
32402 | exon | 8573 | 8835 | 8573 | ID=MS.gene57755.t1.exon6;Parent=MS.gene57755.t1 |
32402 | CDS | 8573 | 8835 | 8573 | ID=cds.MS.gene57755.t1;Parent=MS.gene57755.t1 |
32402 | exon | 7757 | 8028 | 7757 | ID=MS.gene57755.t1.exon7;Parent=MS.gene57755.t1 |
32402 | CDS | 7757 | 8028 | 7757 | ID=cds.MS.gene57755.t1;Parent=MS.gene57755.t1 |
32402 | exon | 7252 | 7682 | 7252 | ID=MS.gene57755.t1.exon8;Parent=MS.gene57755.t1 |
32402 | CDS | 7252 | 7682 | 7252 | ID=cds.MS.gene57755.t1;Parent=MS.gene57755.t1 |
32402 | exon | 6917 | 7020 | 6917 | ID=MS.gene57755.t1.exon9;Parent=MS.gene57755.t1 |
32402 | CDS | 6917 | 7020 | 6917 | ID=cds.MS.gene57755.t1;Parent=MS.gene57755.t1 |
32402 | exon | 6031 | 6236 | 6031 | ID=MS.gene57755.t1.exon10;Parent=MS.gene57755.t1 |
32402 | CDS | 6031 | 6236 | 6031 | ID=cds.MS.gene57755.t1;Parent=MS.gene57755.t1 |
32402 | exon | 5706 | 5882 | 5706 | ID=MS.gene57755.t1.exon11;Parent=MS.gene57755.t1 |
32402 | CDS | 5706 | 5882 | 5706 | ID=cds.MS.gene57755.t1;Parent=MS.gene57755.t1 |
32402 | exon | 5095 | 5556 | 5095 | ID=MS.gene57755.t1.exon12;Parent=MS.gene57755.t1 |
32402 | CDS | 5095 | 5556 | 5095 | ID=cds.MS.gene57755.t1;Parent=MS.gene57755.t1 |
32402 | exon | 4690 | 4962 | 4690 | ID=MS.gene57755.t1.exon13;Parent=MS.gene57755.t1 |
32402 | CDS | 4690 | 4962 | 4690 | ID=cds.MS.gene57755.t1;Parent=MS.gene57755.t1 |
32402 | exon | 4504 | 4539 | 4504 | ID=MS.gene57755.t1.exon14;Parent=MS.gene57755.t1 |
32402 | CDS | 4504 | 4539 | 4504 | ID=cds.MS.gene57755.t1;Parent=MS.gene57755.t1 |
32402 | exon | 4218 | 4462 | 4218 | ID=MS.gene57755.t1.exon15;Parent=MS.gene57755.t1 |
32402 | CDS | 4218 | 4462 | 4218 | ID=cds.MS.gene57755.t1;Parent=MS.gene57755.t1 |
32402 | exon | 3833 | 4074 | 3833 | ID=MS.gene57755.t1.exon16;Parent=MS.gene57755.t1 |
32402 | CDS | 3833 | 4074 | 3833 | ID=cds.MS.gene57755.t1;Parent=MS.gene57755.t1 |
32402 | exon | 3587 | 3680 | 3587 | ID=MS.gene57755.t1.exon17;Parent=MS.gene57755.t1 |
32402 | CDS | 3587 | 3680 | 3587 | ID=cds.MS.gene57755.t1;Parent=MS.gene57755.t1 |
32402 | exon | 3028 | 3193 | 3028 | ID=MS.gene57755.t1.exon18;Parent=MS.gene57755.t1 |
32402 | CDS | 3028 | 3193 | 3028 | ID=cds.MS.gene57755.t1;Parent=MS.gene57755.t1 |
Gene Sequence |
Protein sequence |