AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene40936

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40936.t1 MTR_3g096930 97.539 447 9 1 1 447 1 445 0.0 892
MS.gene40936.t1 MTR_8g094590 72.390 431 101 4 18 447 22 435 0.0 650
MS.gene40936.t1 MTR_8g094590 71.392 395 95 4 18 411 22 399 0.0 588
MS.gene40936.t1 MTR_8g094590 69.935 306 74 4 18 322 22 310 1.42e-155 443
MS.gene40936.t1 MTR_1g029810 55.556 378 162 5 68 441 39 414 5.07e-143 415
MS.gene40936.t1 MTR_1g029810 55.438 377 162 5 68 440 39 413 2.08e-141 412
MS.gene40936.t1 MTR_4g023650 48.303 383 184 8 71 442 46 425 2.47e-120 357
MS.gene40936.t1 MTR_4g023630 48.294 381 183 9 71 440 46 423 9.38e-116 346
MS.gene40936.t1 MTR_6g084710 44.855 379 192 11 71 436 176 550 1.07e-95 299
MS.gene40936.t1 MTR_6g084710 44.545 330 166 11 71 387 176 501 1.84e-79 255
MS.gene40936.t1 MTR_3g006820 37.250 400 222 15 55 440 32 416 1.48e-74 239
MS.gene40936.t1 MTR_1g061940 25.783 415 256 13 66 444 59 457 1.87e-34 134
MS.gene40936.t1 MTR_1g078240 26.984 441 267 17 40 446 20 439 1.93e-33 131
MS.gene40936.t1 MTR_1g078240 26.923 442 267 18 40 446 20 440 1.30e-32 129
MS.gene40936.t1 MTR_7g080230 26.585 410 250 17 66 444 49 438 8.32e-32 127
MS.gene40936.t1 MTR_7g102750 26.214 412 238 17 75 444 68 455 5.96e-31 124
MS.gene40936.t1 MTR_4g095270 27.540 374 236 14 77 436 71 423 1.69e-29 121
MS.gene40936.t1 MTR_2g084550 26.866 402 248 16 66 437 53 438 1.72e-29 120
MS.gene40936.t1 MTR_4g095270 27.228 404 252 16 52 436 43 423 2.80e-29 121
MS.gene40936.t1 MTR_7g021510 27.419 434 256 19 47 444 31 441 7.33e-29 118
MS.gene40936.t1 MTR_4g056420 25.063 395 247 16 73 437 62 437 7.91e-29 118
MS.gene40936.t1 MTR_5g016260 26.431 367 239 13 85 439 87 434 3.40e-27 114
MS.gene40936.t1 MTR_5g016260 26.431 367 239 13 85 439 87 434 7.16e-27 114
MS.gene40936.t1 MTR_5g061690 27.568 370 218 15 91 436 106 449 6.08e-26 110
MS.gene40936.t1 MTR_8g038280 25.000 400 247 14 65 439 65 436 9.11e-26 109
MS.gene40936.t1 MTR_5g080890 25.500 400 243 16 65 439 65 434 1.71e-25 108
MS.gene40936.t1 MTR_5g022880 27.174 368 223 12 91 436 117 461 4.36e-25 108
MS.gene40936.t1 MTR_8g096990 25.000 396 248 14 65 439 65 432 5.23e-25 107
MS.gene40936.t1 MTR_5g080960 25.500 400 243 16 65 439 65 434 9.90e-25 106
MS.gene40936.t1 MTR_8g075090 29.288 379 217 19 91 443 117 470 1.21e-24 106
MS.gene40936.t1 MTR_8g075090 29.380 371 215 18 91 439 117 462 1.32e-24 106
MS.gene40936.t1 MTR_1g078240 27.778 306 191 11 40 318 20 322 1.57e-24 104
MS.gene40936.t1 MTR_5g044770 25.661 378 227 17 85 439 85 431 8.72e-24 103
MS.gene40936.t1 MTR_0036s0110 25.445 393 243 16 66 438 80 442 1.01e-23 103
MS.gene40936.t1 MTR_3g097150 25.564 399 228 22 71 439 90 449 4.59e-23 101
MS.gene40936.t1 MTR_7g102750 25.000 356 215 14 75 402 68 399 2.23e-22 99.4
MS.gene40936.t1 MTR_3g087780 25.831 391 223 15 91 447 104 461 5.10e-22 99.0
MS.gene40936.t1 MTR_5g008110 26.735 389 220 17 80 438 62 415 7.55e-22 97.4
MS.gene40936.t1 MTR_2g067830 25.260 384 242 15 76 438 47 406 1.38e-21 96.7
MS.gene40936.t1 MTR_7g080230 26.176 340 208 14 129 444 48 368 5.51e-21 95.1
MS.gene40936.t1 MTR_0036s0050 24.485 388 246 15 68 438 78 435 8.32e-21 94.7
MS.gene40936.t1 MTR_5g061690 27.419 310 191 12 137 436 25 310 3.05e-20 92.4
MS.gene40936.t1 MTR_2g070430 27.363 402 210 22 87 438 88 457 2.72e-19 90.5
MS.gene40936.t1 MTR_8g075010 26.455 378 228 16 84 436 97 449 2.97e-19 90.5
MS.gene40936.t1 MTR_8g075090 29.446 343 195 18 91 411 117 434 3.68e-19 90.1
MS.gene40936.t1 MTR_2g105300 24.737 380 241 15 77 435 26 381 1.29e-18 87.8
MS.gene40936.t1 MTR_3g070980 28.862 246 117 7 84 325 15 206 1.59e-18 84.3
MS.gene40936.t1 MTR_7g117430 28.117 377 216 19 85 437 140 485 1.83e-18 87.8
MS.gene40936.t1 MTR_0036s0070 23.117 385 248 15 68 439 78 427 1.69e-17 84.7
MS.gene40936.t1 MTR_4g007740 26.005 373 231 19 88 439 132 480 1.02e-16 82.8
MS.gene40936.t1 MTR_8g038250 23.785 391 223 15 72 439 78 416 2.24e-16 81.3
MS.gene40936.t1 MTR_3g087780 25.439 342 200 13 130 447 45 355 2.43e-16 81.3
MS.gene40936.t1 MTR_3g087780 25.740 338 204 12 130 447 9 319 2.61e-16 80.9
MS.gene40936.t1 MTR_5g091130 26.018 442 262 16 34 439 144 556 4.19e-16 80.9
MS.gene40936.t1 MTR_5g077850 23.136 389 233 12 89 441 84 442 1.93e-15 78.6
MS.gene40936.t1 MTR_8g103880 30.357 168 98 6 89 252 119 271 4.45e-15 77.4
MS.gene40936.t1 MTR_5g008070 25.000 376 227 18 85 436 80 424 4.84e-15 77.0
MS.gene40936.t1 MTR_1g115210 31.757 148 85 6 85 228 145 280 1.59e-14 75.9
MS.gene40936.t1 MTR_5g044570 25.405 370 210 20 87 438 90 411 2.02e-14 75.1
MS.gene40936.t1 MTR_8g038310 26.523 279 157 13 85 343 86 336 4.54e-14 73.9
MS.gene40936.t1 MTR_6g085010 24.242 363 226 16 91 436 161 491 4.84e-14 74.3
MS.gene40936.t1 MTR_2g028190 23.936 376 239 15 85 437 101 452 5.51e-14 73.9
MS.gene40936.t1 MTR_0024s0040 25.581 301 183 14 86 360 63 348 8.45e-14 73.2
MS.gene40936.t1 MTR_3g053980 24.267 375 245 14 79 437 135 486 1.48e-13 72.8
MS.gene40936.t1 MTR_3g046300 23.620 453 266 20 31 439 45 461 3.60e-13 71.6
MS.gene40936.t1 MTR_3g053710 25.130 386 236 20 77 436 108 466 6.15e-12 67.8
MS.gene40936.t1 MTR_5g077920 23.316 386 238 12 89 441 71 431 2.54e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40936.t1 AT4G33490 65.464 388 131 3 63 447 35 422 0.0 540
MS.gene40936.t1 AT4G33490 67.614 352 111 3 63 411 32 383 7.38e-177 501
MS.gene40936.t1 AT1G44130 51.989 377 176 5 69 442 31 405 1.05e-143 416
MS.gene40936.t1 AT1G77480 47.118 399 206 5 49 443 29 426 2.33e-131 386
MS.gene40936.t1 AT1G77480 46.970 396 205 5 49 440 29 423 1.27e-129 383
MS.gene40936.t1 AT1G49050 44.836 397 194 14 71 447 187 578 3.67e-94 295
MS.gene40936.t1 AT1G49050 43.570 381 192 13 86 447 29 405 7.23e-88 274
MS.gene40936.t1 AT1G49050 43.911 271 134 9 71 325 187 455 9.33e-59 200
MS.gene40936.t1 AT1G65240 28.960 404 238 14 68 444 53 434 3.51e-38 144
MS.gene40936.t1 AT2G36670 26.521 411 243 15 70 447 81 465 6.18e-34 133
MS.gene40936.t1 AT5G22850 26.316 399 244 15 70 437 62 441 9.69e-34 132
MS.gene40936.t1 AT3G02740 29.250 400 238 16 71 444 67 447 8.40e-33 130
MS.gene40936.t1 AT5G43100 28.841 371 224 15 85 439 74 420 1.61e-32 129
MS.gene40936.t1 AT5G36260 27.273 385 238 12 84 444 75 441 2.67e-32 128
MS.gene40936.t1 AT2G36670 26.202 416 243 16 70 447 81 470 9.43e-32 127
MS.gene40936.t1 AT5G43100 28.841 371 224 15 85 439 74 420 1.02e-31 128
MS.gene40936.t1 AT3G02740 29.124 388 232 15 81 444 4 372 1.96e-31 125
MS.gene40936.t1 AT2G36670 25.700 393 235 14 86 447 33 399 1.60e-30 122
MS.gene40936.t1 AT2G36670 25.700 393 235 14 86 447 33 399 1.60e-30 122
MS.gene40936.t1 AT1G05840 26.904 394 229 13 85 444 78 446 2.42e-30 123
MS.gene40936.t1 AT1G08210 26.931 479 280 18 7 445 9 457 9.72e-29 118
MS.gene40936.t1 AT1G08210 26.931 479 280 18 7 445 43 491 1.56e-28 118
MS.gene40936.t1 AT1G08210 26.931 479 280 18 7 445 57 505 1.82e-28 118
MS.gene40936.t1 AT3G50050 26.781 407 260 14 51 439 53 439 5.72e-28 117
MS.gene40936.t1 AT2G17760 29.973 377 219 19 81 436 97 449 2.35e-27 114
MS.gene40936.t1 AT1G08210 25.845 503 282 19 7 445 9 484 4.22e-24 105
MS.gene40936.t1 AT5G10080 26.984 378 220 14 91 438 104 455 7.84e-23 101
MS.gene40936.t1 AT3G25700 26.702 382 236 17 85 436 82 449 3.32e-22 99.0
MS.gene40936.t1 AT4G35880 26.702 382 230 15 84 442 103 457 1.25e-21 97.8
MS.gene40936.t1 AT5G10770 26.203 374 238 15 79 437 124 474 9.48e-21 94.7
MS.gene40936.t1 AT3G51330 26.415 371 242 15 84 437 98 454 1.28e-20 94.4
MS.gene40936.t1 AT3G51330 26.486 370 241 15 84 436 98 453 1.60e-20 94.4
MS.gene40936.t1 AT3G51350 27.224 371 231 15 86 436 101 452 8.53e-20 92.4
MS.gene40936.t1 AT3G51360 24.462 372 242 12 84 437 2 352 6.33e-19 89.0
MS.gene40936.t1 AT2G28010 32.000 200 113 7 58 256 39 216 6.59e-19 88.6
MS.gene40936.t1 AT3G51360 24.932 365 235 12 91 437 93 436 1.04e-18 89.0
MS.gene40936.t1 AT3G51360 24.932 365 235 12 91 437 103 446 1.12e-18 88.6
MS.gene40936.t1 AT1G66180 22.697 445 262 17 27 439 35 429 5.43e-17 83.2
MS.gene40936.t1 AT1G64830 28.333 300 177 16 85 360 84 369 3.95e-16 80.5
MS.gene40936.t1 AT4G35880 26.163 344 209 14 84 404 103 424 4.51e-16 80.5
MS.gene40936.t1 AT3G51340 26.216 370 235 14 84 436 99 447 6.85e-16 80.1
MS.gene40936.t1 AT1G01300 26.260 377 221 18 85 436 140 484 1.58e-15 79.0
MS.gene40936.t1 AT4G12920 25.490 255 172 10 87 334 58 301 1.63e-15 78.6
MS.gene40936.t1 AT3G18490 24.675 385 229 21 77 436 152 500 8.02e-15 77.0
MS.gene40936.t1 AT3G51360 28.689 244 151 8 91 319 103 338 9.57e-15 75.9
MS.gene40936.t1 AT3G51360 28.279 244 152 7 91 319 103 338 1.29e-14 75.9
MS.gene40936.t1 AT3G51360 28.689 244 151 8 91 319 103 338 1.46e-14 75.9
MS.gene40936.t1 AT3G51360 28.689 244 151 8 91 319 93 328 2.08e-14 75.1
MS.gene40936.t1 AT3G51340 25.526 380 237 15 84 436 99 459 2.31e-14 75.5
MS.gene40936.t1 AT3G51360 28.689 244 151 8 91 319 93 328 2.53e-14 75.1
MS.gene40936.t1 AT2G28040 24.645 422 249 20 34 437 12 382 2.89e-14 74.7
MS.gene40936.t1 AT5G37540 23.404 423 266 15 52 440 44 442 6.38e-14 73.9
MS.gene40936.t1 AT2G28040 24.495 396 237 20 66 439 38 393 1.10e-13 72.8
MS.gene40936.t1 AT4G30030 24.668 377 235 18 83 439 75 422 2.12e-13 72.0
MS.gene40936.t1 AT2G23945 27.046 281 171 11 86 346 95 361 7.24e-13 70.9
MS.gene40936.t1 AT5G10760 27.132 258 155 10 85 326 130 370 2.03e-12 69.3
MS.gene40936.t1 AT1G25510 23.360 381 236 16 77 436 138 483 4.33e-12 68.2
MS.gene40936.t1 AT3G20015 29.924 264 152 11 85 329 129 378 5.38e-12 68.2
MS.gene40936.t1 AT5G02190 23.980 392 218 23 96 437 82 443 1.49e-11 66.6
MS.gene40936.t1 AT2G35615 22.622 389 238 14 85 437 83 444 2.82e-11 65.9
MS.gene40936.t1 AT1G31450 24.548 387 231 16 85 437 83 442 7.00e-11 64.3
MS.gene40936.t1 AT3G25700 32.812 128 75 6 85 202 82 208 7.83e-11 63.9

Find 115 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCTGACATCTTTGGATTT+TGG 0.149011 3.2:+80872159 None:intergenic
TAATCAAATGCTGACATCTT+TGG 0.242452 3.2:+80872152 None:intergenic
CTTATCAAGCACTAATTTCT+TGG 0.254030 3.2:-80873024 MS.gene40936:CDS
TGGTTCATCGGTTGTGTTCC+CGG 0.283511 3.2:-80875352 MS.gene40936:CDS
AATCATGAAGTCAGGGAAAT+TGG 0.293581 3.2:-80875562 None:intergenic
GCTTTCGATCTTCCACTTCC+TGG 0.304667 3.2:+80872656 None:intergenic
GGCGGAGGATACATCTTCTT+TGG 0.305148 3.2:-80873299 MS.gene40936:CDS
AGAGGGAGAGTTTGGTCTTC+AGG 0.323198 3.2:+80872755 None:intergenic
AGACACCACATCCGCTTTAC+CGG 0.336790 3.2:-80874306 MS.gene40936:CDS
GTGTCAATATCAAGAAAATA+TGG 0.341260 3.2:+80874567 None:intergenic
GACAATGAAAAGCAGTTGAT+AGG 0.341276 3.2:-80872210 MS.gene40936:CDS
CTTCAGGAGGGATTTCGAAT+TGG 0.346518 3.2:+80872633 None:intergenic
TCGGTTGTGTTCCCGGTTCA+TGG 0.346643 3.2:-80875345 MS.gene40936:CDS
TTCTTGGAGGGAAGAGGACT+GGG 0.346941 3.2:-80873108 MS.gene40936:CDS
CGCCATTCCTACCTCCGATT+AGG 0.353194 3.2:+80872411 None:intergenic
GGAGGGAAGAGGACTGGGTT+TGG 0.363106 3.2:-80873103 MS.gene40936:CDS
ACCAACATAGAGGGAGAGTT+TGG 0.364966 3.2:+80872747 None:intergenic
TCTACTTGTTTAGCTTGGTT+TGG 0.365632 3.2:-80875507 MS.gene40936:CDS
TCTTCCTACCACCCCGTAGA+TGG 0.373727 3.2:-80873419 MS.gene40936:CDS
ACTTCATATACACTTCTAAA+AGG 0.375337 3.2:+80872713 None:intergenic
TTCAGGAGGGATTTCGAATT+GGG 0.375689 3.2:+80872634 None:intergenic
GGATAAACATTTCCATGAAC+CGG 0.391556 3.2:+80875333 None:intergenic
CCTGGGAAGCTAAGTGCAAT+AGG 0.403734 3.2:+80872674 None:intergenic
GCCTTGTTCGCGTTGCTCTC+AGG 0.405030 3.2:-80874511 MS.gene40936:intron
TTATCAAGCACTAATTTCTT+GGG 0.408330 3.2:-80873023 MS.gene40936:intron
GATATAATCAGATATGCTTC+AGG 0.410114 3.2:+80872617 None:intergenic
ATGGAATGCTTGGCCTTGGC+AGG 0.412501 3.2:-80873400 MS.gene40936:CDS
CTCAGCAAACATTACTCAGC+AGG 0.412530 3.2:-80873145 MS.gene40936:intron
CATGGAAATGTTTATCCTGT+TGG 0.413700 3.2:-80875327 MS.gene40936:CDS
ATGGAAATGTTTATCCTGTT+GGG 0.418408 3.2:-80875326 MS.gene40936:intron
GTTCCTCTACTTGTTTAGCT+TGG 0.418515 3.2:-80875512 MS.gene40936:CDS
CATCACATTGAAGCCATGTT+AGG 0.420882 3.2:+80874535 None:intergenic
CTTAAAGTTCGTATGGCACT+TGG 0.422527 3.2:-80874103 MS.gene40936:CDS
AATAGAGAAATCATGAAGTC+AGG 0.426807 3.2:-80875570 None:intergenic
ATTTCAAGTTCAAGTGCAAA+TGG 0.428003 3.2:-80875456 MS.gene40936:CDS
CTTTCGATCTTCCACTTCCT+GGG 0.434979 3.2:+80872657 None:intergenic
TATGTTCTCAACTTTACAAA+TGG 0.435278 3.2:-80874133 MS.gene40936:CDS
ACGGGGTGGTAGGAAGAATC+TGG 0.438753 3.2:+80873425 None:intergenic
TGTTTATGATTCTTCTCGAT+TGG 0.447111 3.2:-80873273 MS.gene40936:CDS
GTTCTTGGAGGGAAGAGGAC+TGG 0.447212 3.2:-80873109 MS.gene40936:CDS
GATATCACAGCTGAATGGTC+AGG 0.452709 3.2:-80873363 MS.gene40936:CDS
ATGATTCTTCTCGATTGGCT+TGG 0.455289 3.2:-80873268 MS.gene40936:CDS
CCTATTGCACTTAGCTTCCC+AGG 0.459180 3.2:-80872674 MS.gene40936:CDS
ATAATGTGACTATCAACATT+GGG 0.460427 3.2:-80874602 MS.gene40936:CDS
AACATGGGAAATGTTTGCTT+GGG 0.462552 3.2:-80872473 MS.gene40936:CDS
ATATCAAGAAAATATGGCCT+TGG 0.468926 3.2:+80874573 None:intergenic
GCACTTAGCTTCCCAGGAAG+TGG 0.475231 3.2:-80872668 MS.gene40936:CDS
GCACAGAGGGGATGCCTGCA+TGG 0.478162 3.2:+80874265 None:intergenic
GTAGATGGAATGCTTGGCCT+TGG 0.479671 3.2:-80873404 MS.gene40936:CDS
GAACATGGGAAATGTTTGCT+TGG 0.481022 3.2:-80872474 MS.gene40936:CDS
GTGGAAGATGTAAACCTAAT+CGG 0.481109 3.2:-80872425 MS.gene40936:CDS
ACTCTCCCTCTATGTTGGTA+TGG 0.486306 3.2:-80872743 MS.gene40936:CDS
ATTCTAGACGGCTCTGAAGT+AGG 0.488461 3.2:-80872449 MS.gene40936:CDS
AAGGCCAAGCATTCCATCTA+CGG 0.491428 3.2:+80873406 None:intergenic
TCAAGAAAATATGGCCTTGG+TGG 0.495645 3.2:+80874576 None:intergenic
CACCCCGTAGATGGAATGCT+TGG 0.499828 3.2:-80873410 MS.gene40936:CDS
TACCATCACTTTGTCTAGCA+TGG 0.505530 3.2:+80872236 None:intergenic
CGAAAACGATTCAAGAATGA+AGG 0.508091 3.2:+80875378 None:intergenic
AGGCCAAGCATTCCATCTAC+GGG 0.508129 3.2:+80873407 None:intergenic
GTGCCATACGAACTTTAAGT+TGG 0.511112 3.2:+80874107 None:intergenic
GCAGATCATTACTCATCTCT+TGG 0.518717 3.2:-80874175 MS.gene40936:CDS
TATAATGTGACTATCAACAT+TGG 0.520628 3.2:-80874603 MS.gene40936:CDS
CTAGGCCGGTAAAGCGGATG+TGG 0.520658 3.2:+80874301 None:intergenic
ACAATGAAAAGCAGTTGATA+GGG 0.527865 3.2:-80872209 MS.gene40936:CDS
GTGATGCACGGATGCACAGA+GGG 0.529685 3.2:+80874252 None:intergenic
GGAGCTGAACTTGTTCTTGG+AGG 0.531520 3.2:-80873121 MS.gene40936:CDS
GATGACGACGACGACGATGA+AGG 0.535925 3.2:+80875405 None:intergenic
CATGGGACTAAGTCATTGCT+AGG 0.535975 3.2:+80874283 None:intergenic
AACTTGTTCTTGGAGGGAAG+AGG 0.539126 3.2:-80873114 MS.gene40936:CDS
TGGAATGCTTGGCCTTGGCA+GGG 0.541186 3.2:-80873399 MS.gene40936:CDS
GGAATGCTTGGCCTTGGCAG+GGG 0.545359 3.2:-80873398 MS.gene40936:CDS
GAGCTGAACTTGTTCTTGGA+GGG 0.545394 3.2:-80873120 MS.gene40936:CDS
TACTAATCTCTCGACGACAT+TGG 0.546672 3.2:+80873242 None:intergenic
CATTCCATCTACGGGGTGGT+AGG 0.549212 3.2:+80873415 None:intergenic
ATATCACAGCTGAATGGTCA+GGG 0.557396 3.2:-80873362 MS.gene40936:CDS
CTGTGCATCCGTGCATCACA+CGG 0.557548 3.2:-80874248 MS.gene40936:CDS
TCAGCAAACATTACTCAGCA+GGG 0.557841 3.2:-80873144 MS.gene40936:intron
ATAGAGAAATCATGAAGTCA+GGG 0.558907 3.2:-80875569 None:intergenic
AGGTTGTTCATATGAAAGAA+TGG 0.559496 3.2:+80875425 None:intergenic
CACAGAGGGGATGCCTGCAT+GGG 0.564456 3.2:+80874266 None:intergenic
GGACTAAGTCATTGCTAGGC+CGG 0.569566 3.2:+80874287 None:intergenic
GTTTGCTTGGGCATTCTAGA+CGG 0.569919 3.2:-80872461 MS.gene40936:CDS
GTAGTTATCCGTGTGATGCA+CGG 0.570573 3.2:+80874240 None:intergenic
ACCAAACTCTCCCTCTATGT+TGG 0.574564 3.2:-80872748 MS.gene40936:CDS
TTAAAGTTCGTATGGCACTT+GGG 0.575859 3.2:-80874102 MS.gene40936:intron
ACACGGGTAGCGACCTAACA+TGG 0.578697 3.2:-80874548 MS.gene40936:CDS
ACCTGAGAGCAACGCGAACA+AGG 0.580548 3.2:+80874510 None:intergenic
GGTTTAGTGAGAAATGTCGT+TGG 0.585900 3.2:-80873341 MS.gene40936:CDS
GCAATGACTTAGTCCCATGC+AGG 0.592637 3.2:-80874279 MS.gene40936:CDS
CAAGAAAATATGGCCTTGGT+GGG 0.593840 3.2:+80874577 None:intergenic
TTTCCATATGTAGTTGACGA+AGG 0.600659 3.2:-80872807 MS.gene40936:intron
AGCTTGATATCACAGCTGAA+TGG 0.601370 3.2:-80873368 MS.gene40936:CDS
TGTTTGAGTGCACAAGGCGG+AGG 0.601478 3.2:-80873314 MS.gene40936:CDS
AGTCCAACTTAAAGTTCGTA+TGG 0.601835 3.2:-80874110 MS.gene40936:CDS
ATTCAGCTGTGATATCAAGC+TGG 0.604358 3.2:+80873370 None:intergenic
AGACGGCTCTGAAGTAGGAG+TGG 0.605898 3.2:-80872444 MS.gene40936:CDS
AAACCAAGCTAAACAAGTAG+AGG 0.606468 3.2:+80875509 None:intergenic
TAGTTGACGAAGGAATTAGC+TGG 0.606843 3.2:-80872797 MS.gene40936:CDS
AAATTGTTCTTCCAGAACAT+GGG 0.610504 3.2:-80872488 MS.gene40936:intron
ATAATCAGATATGCTTCAGG+AGG 0.624631 3.2:+80872620 None:intergenic
GGACACTGTTTGAGTGCACA+AGG 0.625207 3.2:-80873320 MS.gene40936:CDS
ATGAAAAGCAGTTGATAGGG+TGG 0.632654 3.2:-80872206 MS.gene40936:CDS
ATCCATGCTAGACAAAGTGA+TGG 0.638414 3.2:-80872238 MS.gene40936:CDS
TCAACATTGGGTACCCACCA+AGG 0.642379 3.2:-80874590 MS.gene40936:CDS
GATAAACATTTCCATGAACC+GGG 0.645327 3.2:+80875334 None:intergenic
AGCAAACATTACTCAGCAGG+GGG 0.654958 3.2:-80873142 MS.gene40936:CDS
CAGCAAACATTACTCAGCAG+GGG 0.656453 3.2:-80873143 MS.gene40936:CDS
TCATTGCTAGGCCGGTAAAG+CGG 0.656612 3.2:+80874295 None:intergenic
TAATCAGATATGCTTCAGGA+GGG 0.677945 3.2:+80872621 None:intergenic
GAAGATGTAAACCTAATCGG+AGG 0.690670 3.2:-80872422 MS.gene40936:intron
CAAGCATTCCATCTACGGGG+TGG 0.700753 3.2:+80873411 None:intergenic
TGTGATGCACGGATGCACAG+AGG 0.715403 3.2:+80874251 None:intergenic
CACTGTTTGAGTGCACAAGG+CGG 0.732542 3.2:-80873317 MS.gene40936:CDS
GGCCAAGCATTCCATCTACG+GGG 0.749113 3.2:+80873408 None:intergenic
TGATGCACGGATGCACAGAG+GGG 0.795188 3.2:+80874253 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATACTATTATTAGTTAA+TGG + chr3.2:80873970-80873989 None:intergenic 10.0%
!!! CTTTTTTTTTAATATATAGA+TGG - chr3.2:80872637-80872656 MS.gene40936:CDS 10.0%
!! AAAAAAAAAGCTTTCAATTT+GGG + chr3.2:80872627-80872646 None:intergenic 15.0%
!! AAAGTTTCCAATTTATATAT+GGG - chr3.2:80873917-80873936 MS.gene40936:intron 15.0%
!! ATTATTAGTTAATGGTATTA+TGG + chr3.2:80873962-80873981 None:intergenic 15.0%
!! CTAATAATAGTATTTACTAA+TGG - chr3.2:80873974-80873993 MS.gene40936:intron 15.0%
!! TAAAAAAAAAGCTTTCAATT+TGG + chr3.2:80872628-80872647 None:intergenic 15.0%
!! TAAGTATAATTTATTCTGTT+TGG - chr3.2:80872796-80872815 MS.gene40936:CDS 15.0%
!! TTTATTAAGAAGTAAAAATC+AGG - chr3.2:80874208-80874227 MS.gene40936:CDS 15.0%
!!! TATTGAAGATTAATTTTGAT+AGG + chr3.2:80873376-80873395 None:intergenic 15.0%
!!! TGATTTTTACTTCTTAATAA+AGG + chr3.2:80874209-80874228 None:intergenic 15.0%
!! AAAAGATAAAGCAAAAAAAG+TGG + chr3.2:80875393-80875412 None:intergenic 20.0%
!! AACAAAGAGAATGTAAAAAA+AGG + chr3.2:80872429-80872448 None:intergenic 20.0%
!! AACTACATATGGAAATAAAA+CGG + chr3.2:80874901-80874920 None:intergenic 20.0%
!! AAGTTTCCAATTTATATATG+GGG - chr3.2:80873918-80873937 MS.gene40936:intron 20.0%
!! AATCAATTGTAAAAACCAAT+TGG + chr3.2:80872960-80872979 None:intergenic 20.0%
!! ACAAAGAAAAACATGATTAT+GGG + chr3.2:80872594-80872613 None:intergenic 20.0%
!! GAAAGTTTCCAATTTATATA+TGG - chr3.2:80873916-80873935 MS.gene40936:intron 20.0%
!! GTGATTGAACAATAAATTTA+AGG + chr3.2:80872988-80873007 None:intergenic 20.0%
!! TAAAATAACAGAACAAAACA+TGG + chr3.2:80872538-80872557 None:intergenic 20.0%
!! TAAACCTTATAAAGATGTTT+AGG + chr3.2:80872563-80872582 None:intergenic 20.0%
!! TAAACTACTATTCTAAGTTT+GGG - chr3.2:80874016-80874035 MS.gene40936:intron 20.0%
!! TATTCCTAAACATCTTTATA+AGG - chr3.2:80872556-80872575 MS.gene40936:intron 20.0%
!! TTAATAAAGGATTAAGTGTA+TGG + chr3.2:80874196-80874215 None:intergenic 20.0%
!!! AAAATTGATTTTGACATGTT+TGG - chr3.2:80872766-80872785 MS.gene40936:CDS 20.0%
!!! AATTTTGTCACCTTAAAAAA+TGG + chr3.2:80872732-80872751 None:intergenic 20.0%
!!! ATATTTTCTTGATATTGACA+CGG - chr3.2:80873148-80873167 MS.gene40936:intron 20.0%
!!! TTCATTTTTTTTGTTTCCTT+CGG - chr3.2:80872450-80872469 MS.gene40936:CDS 20.0%
! AACATACACATAAATTGGAA+CGG + chr3.2:80872702-80872721 None:intergenic 25.0%
! ACTTCATATACACTTCTAAA+AGG + chr3.2:80875003-80875022 None:intergenic 25.0%
! ATAATGTGACTATCAACATT+GGG - chr3.2:80873111-80873130 MS.gene40936:CDS 25.0%
! CCAATTTATGTGTATGTTAT+AGG - chr3.2:80872704-80872723 MS.gene40936:CDS 25.0%
! CCTATAACATACACATAAAT+TGG + chr3.2:80872707-80872726 None:intergenic 25.0%
! CTAAACTACTATTCTAAGTT+TGG - chr3.2:80874015-80874034 MS.gene40936:intron 25.0%
! CTAATCTCATTTCAAGAAAA+AGG + chr3.2:80873299-80873318 None:intergenic 25.0%
! GACAAAGAAAAACATGATTA+TGG + chr3.2:80872595-80872614 None:intergenic 25.0%
! GTGTCAATATCAAGAAAATA+TGG + chr3.2:80873149-80873168 None:intergenic 25.0%
! GTTTAGAAATAAGAACTTGA+TGG + chr3.2:80874001-80874020 None:intergenic 25.0%
! TATAACATAAAGCTAGAAGT+TGG - chr3.2:80872833-80872852 MS.gene40936:intron 25.0%
! TATAATGTGACTATCAACAT+TGG - chr3.2:80873110-80873129 MS.gene40936:CDS 25.0%
! TATGTTCTCAACTTTACAAA+TGG - chr3.2:80873580-80873599 MS.gene40936:intron 25.0%
! TCACTAATACGAGAAAATAT+TGG - chr3.2:80874853-80874872 MS.gene40936:intron 25.0%
! TTATCAAGCACTAATTTCTT+GGG - chr3.2:80874690-80874709 MS.gene40936:intron 25.0%
!! AATCATATCAAGTGATTTTG+TGG - chr3.2:80872674-80872693 MS.gene40936:CDS 25.0%
!! AATTGATAATATCCGTTAAC+AGG + chr3.2:80875357-80875376 None:intergenic 25.0%
!! TATTTTCTTGATATTGACAC+GGG - chr3.2:80873149-80873168 MS.gene40936:intron 25.0%
!! TTTAAAATGCTTGAAATTCG+AGG + chr3.2:80874742-80874761 None:intergenic 25.0%
!!! AACTTTCACTTTAAAATCTC+CGG + chr3.2:80873903-80873922 None:intergenic 25.0%
!!! AAGGTGACAAAATTGATTTT+AGG - chr3.2:80872738-80872757 MS.gene40936:CDS 25.0%
!!! AGGTGACAAAATTGATTTTA+GGG - chr3.2:80872739-80872758 MS.gene40936:CDS 25.0%
!!! CATTCAAAATCATTTTTTGC+TGG - chr3.2:80873024-80873043 MS.gene40936:CDS 25.0%
!!! GTTATAGGTTCCATTTTTTA+AGG - chr3.2:80872719-80872738 MS.gene40936:CDS 25.0%
!!! TTCAAAGTTGTTAATTTGCT+AGG + chr3.2:80873268-80873287 None:intergenic 25.0%
!!! TTTGTTTTCATAAACTATCC+CGG - chr3.2:80873821-80873840 MS.gene40936:intron 25.0%
AAATATCTCTGTGTATGTTC+TGG - chr3.2:80874109-80874128 MS.gene40936:CDS 30.0%
AAATTGTTCTTCCAGAACAT+GGG - chr3.2:80875225-80875244 MS.gene40936:intron 30.0%
AATAACAGAACAAAACATGG+AGG + chr3.2:80872535-80872554 None:intergenic 30.0%
ACATACACATAAATTGGAAC+GGG + chr3.2:80872701-80872720 None:intergenic 30.0%
ACCTGCATATGTTAAAAGTA+AGG + chr3.2:80873088-80873107 None:intergenic 30.0%
AGAAAAACATGATTATGGGA+AGG + chr3.2:80872590-80872609 None:intergenic 30.0%
AGAACATACACAGAGATATT+TGG + chr3.2:80874110-80874129 None:intergenic 30.0%
AGGTTGTTCATATGAAAGAA+TGG + chr3.2:80872291-80872310 None:intergenic 30.0%
ATAACAGAACAAAACATGGA+GGG + chr3.2:80872534-80872553 None:intergenic 30.0%
ATATCAAGAAAATATGGCCT+TGG + chr3.2:80873143-80873162 None:intergenic 30.0%
ATGGAAATGTTTATCCTGTT+GGG - chr3.2:80872387-80872406 MS.gene40936:intron 30.0%
CAGACATACATATATCTATC+TGG + chr3.2:80873330-80873349 None:intergenic 30.0%
CCTGCATATGTTAAAAGTAA+GGG + chr3.2:80873087-80873106 None:intergenic 30.0%
CTTATCAAGCACTAATTTCT+TGG - chr3.2:80874689-80874708 MS.gene40936:intron 30.0%
GATATAATCAGATATGCTTC+AGG + chr3.2:80875099-80875118 None:intergenic 30.0%
TGTAAGCCCCATATATAAAT+TGG + chr3.2:80873927-80873946 None:intergenic 30.0%
TGTTTATGATTCTTCTCGAT+TGG - chr3.2:80874440-80874459 MS.gene40936:intron 30.0%
TTGAATCTATCTACTGACAT+AGG + chr3.2:80874077-80874096 None:intergenic 30.0%
! ACAATGAAAAGCAGTTGATA+GGG - chr3.2:80875504-80875523 MS.gene40936:CDS 30.0%
! CCTTATTTCCATTATTTCTC+CGG + chr3.2:80873843-80873862 None:intergenic 30.0%
! CTTATTTCCATTATTTCTCC+GGG + chr3.2:80873842-80873861 None:intergenic 30.0%
! CTTGAAGAAAGTGATTAGTT+AGG + chr3.2:80875134-80875153 None:intergenic 30.0%
! TGCTAGGTAATTTTGAATGT+TGG + chr3.2:80873252-80873271 None:intergenic 30.0%
! TTTTTCCATACCAACATAGA+GGG + chr3.2:80874978-80874997 None:intergenic 30.0%
!! ATTTCAAGTTCAAGTGCAAA+TGG - chr3.2:80872257-80872276 MS.gene40936:intron 30.0%
!! GGTGACAAAATTGATTTTAG+GGG - chr3.2:80872740-80872759 MS.gene40936:CDS 30.0%
!! TTGGTGCATGTTTTAAATTG+CGG - chr3.2:80872852-80872871 MS.gene40936:intron 30.0%
!! TTGGTTATTTTATGCAGATG+CGG - chr3.2:80874249-80874268 MS.gene40936:CDS 30.0%
!!! GCTATCTAGTACAACTTTTT+TGG - chr3.2:80874230-80874249 MS.gene40936:CDS 30.0%
!!! TCAAAATCATTTTTTGCTGG+CGG - chr3.2:80873027-80873046 MS.gene40936:CDS 30.0%
!!! TTTAGGTTTTTAGTCCTAGT+TGG - chr3.2:80873701-80873720 MS.gene40936:intron 30.0%
AAAACCTAAAGAAGTGAGAG+TGG + chr3.2:80873691-80873710 None:intergenic 35.0%
AAACCAAGCTAAACAAGTAG+AGG + chr3.2:80872207-80872226 None:intergenic 35.0%
AAACTATCCCGGAGAAATAA+TGG - chr3.2:80873832-80873851 MS.gene40936:intron 35.0%
AACATGGGAAATGTTTGCTT+GGG - chr3.2:80875240-80875259 MS.gene40936:intron 35.0%
ACTACTATTCTAAGTTTGGG+TGG - chr3.2:80874019-80874038 MS.gene40936:intron 35.0%
AGTCCAACTTAAAGTTCGTA+TGG - chr3.2:80873603-80873622 MS.gene40936:intron 35.0%
ATAATCAGATATGCTTCAGG+AGG + chr3.2:80875096-80875115 None:intergenic 35.0%
ATTCCTTCGTCAACTACATA+TGG + chr3.2:80874912-80874931 None:intergenic 35.0%
CAAATTGTTCTTCCAGAACA+TGG - chr3.2:80875224-80875243 MS.gene40936:intron 35.0%
CATGGAAATGTTTATCCTGT+TGG - chr3.2:80872386-80872405 MS.gene40936:intron 35.0%
CATTGAGTTTCTCGAAATCA+TGG + chr3.2:80872921-80872940 None:intergenic 35.0%
CGAAAACGATTCAAGAATGA+AGG + chr3.2:80872338-80872357 None:intergenic 35.0%
CTACTATTCTAAGTTTGGGT+GGG - chr3.2:80874020-80874039 MS.gene40936:intron 35.0%
GACAATGAAAAGCAGTTGAT+AGG - chr3.2:80875503-80875522 MS.gene40936:CDS 35.0%
GATAAACATTTCCATGAACC+GGG + chr3.2:80872382-80872401 None:intergenic 35.0%
GGATAAACATTTCCATGAAC+CGG + chr3.2:80872383-80872402 None:intergenic 35.0%
GGGTATGTAAAGCCTATTTA+AGG + chr3.2:80873665-80873684 None:intergenic 35.0%
GTGGAAGATGTAAACCTAAT+CGG - chr3.2:80875288-80875307 MS.gene40936:intron 35.0%
TAAAGAAGTGAGAGTGGTAT+GGG + chr3.2:80873685-80873704 None:intergenic 35.0%
TAATCAGATATGCTTCAGGA+GGG + chr3.2:80875095-80875114 None:intergenic 35.0%
TTAAAGTTCGTATGGCACTT+GGG - chr3.2:80873611-80873630 MS.gene40936:intron 35.0%
TTTATGCCTTTCTTTCTCCT+AGG - chr3.2:80872479-80872498 MS.gene40936:intron 35.0%
TTTCCATATGTAGTTGACGA+AGG - chr3.2:80874906-80874925 MS.gene40936:intron 35.0%
! ATGCTGACATCTTTGGATTT+TGG + chr3.2:80875557-80875576 None:intergenic 35.0%
! CCGGAGAAATAATGGAAATA+AGG - chr3.2:80873840-80873859 MS.gene40936:intron 35.0%
! CTTTTTCCATACCAACATAG+AGG + chr3.2:80874979-80874998 None:intergenic 35.0%
! GCATAGTTCATCAAGAGTTT+TGG + chr3.2:80875418-80875437 None:intergenic 35.0%
! TCTTCAGGTGCTTCTTTTAT+GGG + chr3.2:80874946-80874965 None:intergenic 35.0%
! TCTTCATGCCTTTTCCTATT+TGG - chr3.2:80872508-80872527 MS.gene40936:intron 35.0%
! TTCTTGAATCGTTTTCGTTC+TGG - chr3.2:80872341-80872360 MS.gene40936:intron 35.0%
!! CCCTTACTTTTAACATATGC+AGG - chr3.2:80873084-80873103 MS.gene40936:CDS 35.0%
!! TATTGGCTCATTGCTTAACA+CGG - chr3.2:80874870-80874889 MS.gene40936:intron 35.0%
!! TCTACTTGTTTAGCTTGGTT+TGG - chr3.2:80872206-80872225 MS.gene40936:CDS 35.0%
!!! CATCTTTGGATTTTGGAACT+CGG + chr3.2:80875550-80875569 None:intergenic 35.0%
AACGCTTATGCTATCCAACT+AGG + chr3.2:80873718-80873737 None:intergenic 40.0%
AAGCAACCTAGGAGAAAGAA+AGG + chr3.2:80872488-80872507 None:intergenic 40.0%
AAGGCATAAAGTGAAACCGA+AGG + chr3.2:80872469-80872488 None:intergenic 40.0%
AGCAAACATTTCCCATGTTC+TGG + chr3.2:80875239-80875258 None:intergenic 40.0%
AGCTTGATATCACAGCTGAA+TGG - chr3.2:80874345-80874364 MS.gene40936:intron 40.0%
ATATCACAGCTGAATGGTCA+GGG - chr3.2:80874351-80874370 MS.gene40936:intron 40.0%
ATCCATGCTAGACAAAGTGA+TGG - chr3.2:80875475-80875494 MS.gene40936:CDS 40.0%
ATGGATATGTCTGCATACAC+AGG + chr3.2:80875461-80875480 None:intergenic 40.0%
ATGTAAACCTAATCGGAGGT+AGG - chr3.2:80875295-80875314 MS.gene40936:intron 40.0%
ATTCAGCTGTGATATCAAGC+TGG + chr3.2:80874346-80874365 None:intergenic 40.0%
CATACCACTCTCACTTCTTT+AGG - chr3.2:80873684-80873703 MS.gene40936:intron 40.0%
CATCACATTGAAGCCATGTT+AGG + chr3.2:80873181-80873200 None:intergenic 40.0%
CTAAAGAAGTGAGAGTGGTA+TGG + chr3.2:80873686-80873705 None:intergenic 40.0%
CTGATGCTTGTTCCTGTTAA+CGG - chr3.2:80875342-80875361 MS.gene40936:CDS 40.0%
CTTAAAGTTCGTATGGCACT+TGG - chr3.2:80873610-80873629 MS.gene40936:intron 40.0%
GAACATGGGAAATGTTTGCT+TGG - chr3.2:80875239-80875258 MS.gene40936:intron 40.0%
GAAGATGTAAACCTAATCGG+AGG - chr3.2:80875291-80875310 MS.gene40936:intron 40.0%
GAGTTCGAATATGCACCAAT+TGG - chr3.2:80872942-80872961 MS.gene40936:intron 40.0%
GCAGATCATTACTCATCTCT+TGG - chr3.2:80873538-80873557 MS.gene40936:intron 40.0%
GGTTTAGTGAGAAATGTCGT+TGG - chr3.2:80874372-80874391 MS.gene40936:intron 40.0%
GTGCCATACGAACTTTAAGT+TGG + chr3.2:80873609-80873628 None:intergenic 40.0%
GTGTCAGAAGTTGTAACAAC+CGG - chr3.2:80873881-80873900 MS.gene40936:intron 40.0%
GTTCCTCTACTTGTTTAGCT+TGG - chr3.2:80872201-80872220 MS.gene40936:CDS 40.0%
TACCATCACTTTGTCTAGCA+TGG + chr3.2:80875480-80875499 None:intergenic 40.0%
TACTAATCTCTCGACGACAT+TGG + chr3.2:80874474-80874493 None:intergenic 40.0%
TACTGACATAGGCATTTGTG+AGG + chr3.2:80874066-80874085 None:intergenic 40.0%
TAGTTGACGAAGGAATTAGC+TGG - chr3.2:80874916-80874935 MS.gene40936:intron 40.0%
TCAGCAAACATTACTCAGCA+GGG - chr3.2:80874569-80874588 MS.gene40936:CDS 40.0%
TTCAGGAGGGATTTCGAATT+GGG + chr3.2:80875082-80875101 None:intergenic 40.0%
TTGTCAGCATGACACATGTA+AGG + chr3.2:80875207-80875226 None:intergenic 40.0%
! AGCCTATTTAAGGCTAGCAA+AGG + chr3.2:80873655-80873674 None:intergenic 40.0%
! ATGATTCTTCTCGATTGGCT+TGG - chr3.2:80874445-80874464 MS.gene40936:intron 40.0%
! CAAGAAAATATGGCCTTGGT+GGG + chr3.2:80873139-80873158 None:intergenic 40.0%
! CTGAAACACTTGTTGCAGAA+AGG + chr3.2:80874145-80874164 None:intergenic 40.0%
! GCCTATTTAAGGCTAGCAAA+GGG + chr3.2:80873654-80873673 None:intergenic 40.0%
! GTCTTCAGGTGCTTCTTTTA+TGG + chr3.2:80874947-80874966 None:intergenic 40.0%
! GTTCTTTTTACGTACCCAAC+AGG + chr3.2:80872404-80872423 None:intergenic 40.0%
! TCAAGAAAATATGGCCTTGG+TGG + chr3.2:80873140-80873159 None:intergenic 40.0%
!! ACCCTTTGCTAGCCTTAAAT+AGG - chr3.2:80873650-80873669 MS.gene40936:intron 40.0%
!! ATGAAAAGCAGTTGATAGGG+TGG - chr3.2:80875507-80875526 MS.gene40936:CDS 40.0%
!! CGTTGACATAGTCTTGTTTG+TGG + chr3.2:80874780-80874799 None:intergenic 40.0%
!!! TCGTTTTCGTTCTGGTTCAT+CGG - chr3.2:80872349-80872368 MS.gene40936:intron 40.0%
!!! TTCTTGCTGTTTTTGACGCT+GGG - chr3.2:80874638-80874657 MS.gene40936:intron 40.0%
AACCTAATCGGAGGTAGGAA+TGG - chr3.2:80875300-80875319 MS.gene40936:intron 45.0%
AAGGCCAAGCATTCCATCTA+CGG + chr3.2:80874310-80874329 None:intergenic 45.0%
ACCAAACTCTCCCTCTATGT+TGG - chr3.2:80874965-80874984 MS.gene40936:intron 45.0%
ACCAACATAGAGGGAGAGTT+TGG + chr3.2:80874969-80874988 None:intergenic 45.0%
ACTCTCCCTCTATGTTGGTA+TGG - chr3.2:80874970-80874989 MS.gene40936:intron 45.0%
AGCAAACATTACTCAGCAGG+GGG - chr3.2:80874571-80874590 MS.gene40936:CDS 45.0%
AGGCATGAAGAAAGCAACCT+AGG + chr3.2:80872499-80872518 None:intergenic 45.0%
ATGGAGGGCCAAATAGGAAA+AGG + chr3.2:80872519-80872538 None:intergenic 45.0%
CAAAACATGGAGGGCCAAAT+AGG + chr3.2:80872525-80872544 None:intergenic 45.0%
CAGCAAACATTACTCAGCAG+GGG - chr3.2:80874570-80874589 MS.gene40936:CDS 45.0%
CATGGGACTAAGTCATTGCT+AGG + chr3.2:80873433-80873452 None:intergenic 45.0%
CTCAGCAAACATTACTCAGC+AGG - chr3.2:80874568-80874587 MS.gene40936:CDS 45.0%
CTTCAGGAGGGATTTCGAAT+TGG + chr3.2:80875083-80875102 None:intergenic 45.0%
CTTTCGATCTTCCACTTCCT+GGG + chr3.2:80875059-80875078 None:intergenic 45.0%
GATATCACAGCTGAATGGTC+AGG - chr3.2:80874350-80874369 MS.gene40936:intron 45.0%
GTAGTTATCCGTGTGATGCA+CGG + chr3.2:80873476-80873495 None:intergenic 45.0%
GTTTGCTTGGGCATTCTAGA+CGG - chr3.2:80875252-80875271 MS.gene40936:intron 45.0%
! AACTTGTTCTTGGAGGGAAG+AGG - chr3.2:80874599-80874618 MS.gene40936:CDS 45.0%
! GAGCTGAACTTGTTCTTGGA+GGG - chr3.2:80874593-80874612 MS.gene40936:CDS 45.0%
!! ATTCTAGACGGCTCTGAAGT+AGG - chr3.2:80875264-80875283 MS.gene40936:intron 45.0%
!!! CTTCTTGCTGTTTTTGACGC+TGG - chr3.2:80874637-80874656 MS.gene40936:intron 45.0%
AGACACCACATCCGCTTTAC+CGG - chr3.2:80873407-80873426 MS.gene40936:CDS 50.0%
AGGCCAAGCATTCCATCTAC+GGG + chr3.2:80874309-80874328 None:intergenic 50.0%
ATGTCTGCATACACAGGACG+AGG + chr3.2:80875455-80875474 None:intergenic 50.0%
CACTGTTTGAGTGCACAAGG+CGG - chr3.2:80874396-80874415 MS.gene40936:intron 50.0%
CCTATTGCACTTAGCTTCCC+AGG - chr3.2:80875039-80875058 MS.gene40936:intron 50.0%
CCTGGGAAGCTAAGTGCAAT+AGG + chr3.2:80875042-80875061 None:intergenic 50.0%
GCAATGACTTAGTCCCATGC+AGG - chr3.2:80873434-80873453 MS.gene40936:CDS 50.0%
GCTTTCGATCTTCCACTTCC+TGG + chr3.2:80875060-80875079 None:intergenic 50.0%
GGACACTGTTTGAGTGCACA+AGG - chr3.2:80874393-80874412 MS.gene40936:intron 50.0%
GGACTAAGTCATTGCTAGGC+CGG + chr3.2:80873429-80873448 None:intergenic 50.0%
GGCGGAGGATACATCTTCTT+TGG - chr3.2:80874414-80874433 MS.gene40936:intron 50.0%
GTAGATGGAATGCTTGGCCT+TGG - chr3.2:80874309-80874328 MS.gene40936:intron 50.0%
TCAACATTGGGTACCCACCA+AGG - chr3.2:80873123-80873142 MS.gene40936:CDS 50.0%
TCATTGCTAGGCCGGTAAAG+CGG + chr3.2:80873421-80873440 None:intergenic 50.0%
TGTCTGCATACACAGGACGA+GGG + chr3.2:80875454-80875473 None:intergenic 50.0%
TTCTTGGAGGGAAGAGGACT+GGG - chr3.2:80874605-80874624 MS.gene40936:CDS 50.0%
! AGAGGGAGAGTTTGGTCTTC+AGG + chr3.2:80874961-80874980 None:intergenic 50.0%
! GGAGCTGAACTTGTTCTTGG+AGG - chr3.2:80874592-80874611 MS.gene40936:CDS 50.0%
! TGGTTCATCGGTTGTGTTCC+CGG - chr3.2:80872361-80872380 MS.gene40936:intron 50.0%
ACACGGGTAGCGACCTAACA+TGG - chr3.2:80873165-80873184 MS.gene40936:intron 55.0%
ACCTGAGAGCAACGCGAACA+AGG + chr3.2:80873206-80873225 None:intergenic 55.0%
ACGGGGTGGTAGGAAGAATC+TGG + chr3.2:80874291-80874310 None:intergenic 55.0%
CAAGCATTCCATCTACGGGG+TGG + chr3.2:80874305-80874324 None:intergenic 55.0%
CACCCCGTAGATGGAATGCT+TGG - chr3.2:80874303-80874322 MS.gene40936:CDS 55.0%
CATTCCATCTACGGGGTGGT+AGG + chr3.2:80874301-80874320 None:intergenic 55.0%
CGCCATTCCTACCTCCGATT+AGG + chr3.2:80875305-80875324 None:intergenic 55.0%
CTGTGCATCCGTGCATCACA+CGG - chr3.2:80873465-80873484 MS.gene40936:intron 55.0%
GATGACGACGACGACGATGA+AGG + chr3.2:80872311-80872330 None:intergenic 55.0%
GCACTTAGCTTCCCAGGAAG+TGG - chr3.2:80875045-80875064 MS.gene40936:intron 55.0%
GGCCAAGCATTCCATCTACG+GGG + chr3.2:80874308-80874327 None:intergenic 55.0%
GTGATGCACGGATGCACAGA+GGG + chr3.2:80873464-80873483 None:intergenic 55.0%
GTTCTTGGAGGGAAGAGGAC+TGG - chr3.2:80874604-80874623 MS.gene40936:CDS 55.0%
TCGGTTGTGTTCCCGGTTCA+TGG - chr3.2:80872368-80872387 MS.gene40936:intron 55.0%
TCTTCCTACCACCCCGTAGA+TGG - chr3.2:80874294-80874313 MS.gene40936:CDS 55.0%
TGATGCACGGATGCACAGAG+GGG + chr3.2:80873463-80873482 None:intergenic 55.0%
TGTGATGCACGGATGCACAG+AGG + chr3.2:80873465-80873484 None:intergenic 55.0%
TGTTTGAGTGCACAAGGCGG+AGG - chr3.2:80874399-80874418 MS.gene40936:intron 55.0%
! AGCTGGATTTTCCCCTGCCA+AGG + chr3.2:80874329-80874348 None:intergenic 55.0%
! GGGGGAGCTGAACTTGTTCT+TGG - chr3.2:80874589-80874608 MS.gene40936:CDS 55.0%
!! AGACGGCTCTGAAGTAGGAG+TGG - chr3.2:80875269-80875288 MS.gene40936:intron 55.0%
!! ATGGAATGCTTGGCCTTGGC+AGG - chr3.2:80874313-80874332 MS.gene40936:intron 55.0%
!! TGGAATGCTTGGCCTTGGCA+GGG - chr3.2:80874314-80874333 MS.gene40936:intron 55.0%
CACAGAGGGGATGCCTGCAT+GGG + chr3.2:80873450-80873469 None:intergenic 60.0%
CTAGGCCGGTAAAGCGGATG+TGG + chr3.2:80873415-80873434 None:intergenic 60.0%
GGAGGGAAGAGGACTGGGTT+TGG - chr3.2:80874610-80874629 MS.gene40936:CDS 60.0%
! GCCTTGTTCGCGTTGCTCTC+AGG - chr3.2:80873202-80873221 MS.gene40936:intron 60.0%
!! GGAATGCTTGGCCTTGGCAG+GGG - chr3.2:80874315-80874334 MS.gene40936:intron 60.0%
GCACAGAGGGGATGCCTGCA+TGG + chr3.2:80873451-80873470 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 80872155 80875580 80872155 ID=MS.gene40936
chr3.2 mRNA 80872155 80875580 80872155 ID=MS.gene40936.t1;Parent=MS.gene40936
chr3.2 exon 80875327 80875580 80875327 ID=MS.gene40936.t1.exon1;Parent=MS.gene40936.t1
chr3.2 CDS 80875327 80875580 80875327 ID=cds.MS.gene40936.t1;Parent=MS.gene40936.t1
chr3.2 exon 80874512 80874629 80874512 ID=MS.gene40936.t1.exon2;Parent=MS.gene40936.t1
chr3.2 CDS 80874512 80874629 80874512 ID=cds.MS.gene40936.t1;Parent=MS.gene40936.t1
chr3.2 exon 80874103 80874326 80874103 ID=MS.gene40936.t1.exon3;Parent=MS.gene40936.t1
chr3.2 CDS 80874103 80874326 80874103 ID=cds.MS.gene40936.t1;Parent=MS.gene40936.t1
chr3.2 exon 80873245 80873469 80873245 ID=MS.gene40936.t1.exon4;Parent=MS.gene40936.t1
chr3.2 CDS 80873245 80873469 80873245 ID=cds.MS.gene40936.t1;Parent=MS.gene40936.t1
chr3.2 exon 80873024 80873162 80873024 ID=MS.gene40936.t1.exon5;Parent=MS.gene40936.t1
chr3.2 CDS 80873024 80873162 80873024 ID=cds.MS.gene40936.t1;Parent=MS.gene40936.t1
chr3.2 exon 80872616 80872816 80872616 ID=MS.gene40936.t1.exon6;Parent=MS.gene40936.t1
chr3.2 CDS 80872616 80872816 80872616 ID=cds.MS.gene40936.t1;Parent=MS.gene40936.t1
chr3.2 exon 80872423 80872495 80872423 ID=MS.gene40936.t1.exon7;Parent=MS.gene40936.t1
chr3.2 CDS 80872423 80872495 80872423 ID=cds.MS.gene40936.t1;Parent=MS.gene40936.t1
chr3.2 exon 80872155 80872264 80872155 ID=MS.gene40936.t1.exon8;Parent=MS.gene40936.t1
chr3.2 CDS 80872155 80872264 80872155 ID=cds.MS.gene40936.t1;Parent=MS.gene40936.t1
Gene Sequence

>MS.gene40936

ATGAAGTCAGGGAAATTGGTATTCTTTGTTGTTCTACTCTTGTTGAGTTCCTCTACTTGTTTAGCTTGGTTTGGTAGTAGTAGTAGTAGTAGCAAACACAAAATTTCAAGTTCAAGTGCAAATGGAAGAAACTCCATTCTTTCATATGAACAACCTTCATCGTCGTCGTCGTCATCATCGCCTTCATTCTTGAATCGTTTTCGTTCTGGTTCATCGGTTGTGTTCCCGGTTCATGGAAATGTTTATCCTGTTGGGTACGTAAAAAGAACTTCCTTTTTTTACATTCTCTTTGTTTTTCATTTTTTTTGTTTCCTTCGGTTTCACTTTATGCCTTTCTTTCTCCTAGGTTGCTTTCTTCATGCCTTTTCCTATTTGGCCCTCCATGTTTTGTTCTGTTATTTTATTCCTAAACATCTTTATAAGGTTTATTCACCTTCCCATAATCATGTTTTTCTTTGTCTCATTCATACCCAAATTGAAAGCTTTTTTTTTAATATATAGATGGATCTATGCATATAAAATCATATCAAGTGATTTTGTGGTCCCGTTCCAATTTATGTGTATGTTATAGGTTCCATTTTTTAAGGTGACAAAATTGATTTTAGGGGTATAAAATTGATTTTGACATGTTTGGATGTTCTTAAGTATAATTTATTCTGTTTGGAGAATTTATTCTACTATAACATAAAGCTAGAAGTTGGTGCATGTTTTAAATTGCGGTAAATTTAGCGAAATTAAGCTTTTGCAAAATCACGATGACTCGCCATGATTTCGAGAAACTCAATGCGAGTTCGAATATGCACCAATTGGTTTTTACAATTGATTTCTAACCTTAAATTTATTGTTCAATCACTTTTACATAATTAATTCATTCAAAATCATTTTTTGCTGGCGGAGAAACAAAAAGTCAAAAACAATAATGCAAGTCACCCTTACTTTTAACATATGCAGGTTTTATAATGTGACTATCAACATTGGGTACCCACCAAGGCCATATTTTCTTGATATTGACACGGGTAGCGACCTAACATGGCTTCAATGTGATGCGCCTTGTTCGCGTTGCTCTCAGGTATTCTCACTCACTTTACTCATTGCCAACATTCAAAATTACCTAGCAAATTAACAACTTTGAATTGCAAAGCCTTTTTCTTGAAATGAGATTAGATTTTAGACCAGATAGATATATGTATGTCTGTAGAATCTGTTTGATTAAAATTTCCTATCAAAATTAATCTTCAATAACTGTTTTTTCAGACACCACATCCGCTTTACCGGCCTAGCAATGACTTAGTCCCATGCAGGCATCCCCTCTGTGCATCCGTGCATCACACGGATAACTACGACTGTGAAGTCGAGCATCAGTGTGACTATGAAGTTGAGTATGCAGATCATTACTCATCTCTTGGTGTACTTGTCAATGATGTTTATGTTCTCAACTTTACAAATGGAGTCCAACTTAAAGTTCGTATGGCACTTGGGTTAGTGACTCTTTCTCACCCTTTGCTAGCCTTAAATAGGCTTTACATACCCATACCACTCTCACTTCTTTAGGTTTTTAGTCCTAGTTGGATAGCATAAGCGTTTGCTAATCATATAAGTGCTTATGTATAAGCTATATCTATAACAAAAAATAAATGAAGTCAAATTGTTTTCATATAATCTAAAATTTGTTTTCATAAACTATCCCGGAGAAATAATGGAAATAAGGTGAAAACAACGTATGTACGTGTCAGAAGTTGTAACAACCGGAGATTTTAAAGTGAAAGTTTCCAATTTATATATGGGGCTTACAATGCAAAAGTTACCATAATACCATTAACTAATAATAGTATTTACTAATGGACCATCAAGTTCTTATTTCTAAACTACTATTCTAAGTTTGGGTGGGATGTTACAGAAGTTAAACAGCCTCACAAATGCCTATGTCAGTAGATAGATTCAAATAAGTCAATCCAAATATCTCTGTGTATGTTCTGGCTAAATTTAGCCTTTCTGCAACAAGTGTTTCAGAAAAACACAATTGTTGCATGATGATTATCCATACACTTAATCCTTTATTAAGAAGTAAAAATCAGGCTATCTAGTACAACTTTTTTGGTTATTTTATGCAGATGCGGCTATGATCAGATTTTTCCAGATTCTTCCTACCACCCCGTAGATGGAATGCTTGGCCTTGGCAGGGGAAAATCCAGCTTGATATCACAGCTGAATGGTCAGGGTTTAGTGAGAAATGTCGTTGGACACTGTTTGAGTGCACAAGGCGGAGGATACATCTTCTTTGGAGATGTTTATGATTCTTCTCGATTGGCTTGGACTCCAATGTCGTCGAGAGATTAGTAAGTAGATCTTCACAAGTCAAATACACATTAATTGTAATGATATTAATATTTCTATCTACTAATTTACGATTTTTCTCAGCAAACATTACTCAGCAGGGGGAGCTGAACTTGTTCTTGGAGGGAAGAGGACTGGGTTTGGAAATCTTCTTGCTGTTTTTGACGCTGGGAGTTCTTATACTTACTTCAACTCTAATGCTTATCAAGCACTAATTTCTTGGGTCAGTTGAAAGCAATTTTCGCAATATCCTCGAATTTCAAGCATTTTAAAATGCATATGCTATTACCACAAACAAGACTATGTCAACGTCATCATACAATCTCTAAATTGTTCGAAAAAAATATATAAATTATTTATTTCTTCACTAATACGAGAAAATATTGGCTCATTGCTTAACACGGTTATTCCGTTTTATTTCCATATGTAGTTGACGAAGGAATTAGCTGGAAAGCCCATAAAAGAAGCACCTGAAGACCAAACTCTCCCTCTATGTTGGTATGGAAAAAGACCTTTTAGAAGTGTATATGAAGTCAGAAAATACTTCAAGCCTATTGCACTTAGCTTCCCAGGAAGTGGAAGATCGAAAGCCCAATTCGAAATCCCTCCTGAAGCATATCTGATTATATCAGTGAGTCAAGTCCTAACTAATCACTTTCTTCAAGAATCAAGATTTACTTTTTTATTGCTATCAAAAACTCACAAGTAACTGATACCTTACATGTGTCATGCTGACAAATTGTTCTTCCAGAACATGGGAAATGTTTGCTTGGGCATTCTAGACGGCTCTGAAGTAGGAGTGGAAGATGTAAACCTAATCGGAGGTAGGAATGGCGTTAATCTCTATTTTCTTCTGATGCTTGTTCCTGTTAACGGATATTATCAATTGTGCTGCTTTTGTCCACTTTTTTTGCTTTATCTTTTCACCAAAACTCTTGATGAACTATGCATAATTAAGAAAGCCCTCGTCCTGTGTATGCAGACATATCCATGCTAGACAAAGTGATGGTATTTGACAATGAAAAGCAGTTGATAGGGTGGACAGCAGCAGATTGTAACCGAGTTCCAAAATCCAAAGATGTCAGCATTTGA
Protein sequence

>MS.gene40936.t1

MKSGKLVFFVVLLLLSSSTCLAWFGSSSSSSKHKISSSSANGRNSILSYEQPSSSSSSSSPSFLNRFRSGSSVVFPVHGNVYPVGFYNVTINIGYPPRPYFLDIDTGSDLTWLQCDAPCSRCSQTPHPLYRPSNDLVPCRHPLCASVHHTDNYDCEVEHQCDYEVEYADHYSSLGVLVNDVYVLNFTNGVQLKVRMALGCGYDQIFPDSSYHPVDGMLGLGRGKSSLISQLNGQGLVRNVVGHCLSAQGGGYIFFGDVYDSSRLAWTPMSSRDYKHYSAGGAELVLGGKRTGFGNLLAVFDAGSSYTYFNSNAYQALISWLTKELAGKPIKEAPEDQTLPLCWYGKRPFRSVYEVRKYFKPIALSFPGSGRSKAQFEIPPEAYLIISNMGNVCLGILDGSEVGVEDVNLIGDISMLDKVMVFDNEKQLIGWTAADCNRVPKSKDVSI